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USGS2000

U.S. Geological Survey Activities Related to American Indians and Alaska Natives Fiscal Year 2000

The U.S. Geological Survey (USGS) is an impartial scientific organization that strives to produce scientific results that are relevant to the people of the United States and their land and resource managers. USGS does not improve the quality of its customers' lives; it provides the informational tools for American Indians, Alaska Natives, and other customers to understand and improve their own lives. In cooperation with American Indian and Alaska Native governments, the USGS conducts research on water and mineral resources, animals and plants of environmental, economic, or subsistence importance, natural hazards, and geologic resources. Digital data on cartography, mineral resources, stream flows, biota, and other data sets are available to American Indian and Alaska Native institutions. The USGS recognizes the need to learn from and share knowledge with Native peoples. This report describes most of the activities that the USGS conducted with American Indian and Alaska Native governments, educational institutions, and individuals during Federal Fiscal Year 2000. Some of these USGS activities were conducted in concert with the Bureau of Indian Affairs. Others were conducted by Tribes and the USGS. In the year 2000, the USGS began examining its activities related to American Indians and Native Alaskans to determine how it can better serve these customers within its mandates. More Tribal governments, educational institutions, and other Tribal organizations are using geographic information systems and other digital technologies in recent years. As Tribes become more interested and more adept at managing digital information, they are seeking such data from the USGS with greater frequency. The increasing use of such technologies allows Tribal governments additional means of managing lands and resources for the benefit of current and future generations. The USGS recognizes the need to make its information available to Tribal governments, and to work with those governments and other institutions to advance data management capabilities. The USGS is responding to this need by increasing the transfer of scientific information to American Indian and Alaska Native governments and by training employees of these governments to conduct and improve scientific studies. The USGS is also encouraging American Indians and Alaska Natives to pursue careers in science, and seeking ways to hire Indian and Native students. By identifying, improving, and disseminating information about available hiring mechanisms, the USGS is working to make hiring such students easier, and therefore more likely, for USGS managers. The U.S. Geological Survey is the Federal science bureau within the Department of the Interior (DoI). The USGS is non-regulatory and is not a significant manager of Federal or Trust lands or assets. However, there are two types of USGS activities that do involve American Indians, Alaska Natives, and their lands. The first type of activity is the course of formal studies, conducted through existing USGS programs, that involve collection of specific types of data as well as investigative and research projects. These projects have a duration of two or three years, although a few are parts of longer-term activities. Some are funded through cooperative agreements or reimbursable accounts, from monies provided to the USGS by individual Tribal governments or by the Bureau of Indian Affairs (BIA). The USGS provides matching funds for cooperative projects. These formal projects may also receive funding from the U.S. Environmental Protection Agency, the Indian Health Service (part of the Department of Health and Human Services), or other Federal agencies. The USGS routinely works with its sister bureaus in the Department of the Interior to provide the scientific information and expertise needed to meet the Department's science priorities. Within this context, the USGS and the Bureau of Indian Affairs are cooperating to use USGS knowledge for the benefit of American Indian and Native peoples and their lands. The second type of USGS activity is less formal, based on initiatives designed and conducted by USGS employees. Frequently involving educational activities, these endeavors are prompted by employee interests, often as collateral issues, that result from an individual or group of USGS employees identifying and responding to an observed need. In these activities, USGS employees help us fulfill a mission of the USGS, to make science relevant, while helping their fellow citizens. USGS employees have also taken the initiative to assist American Indians and Alaska Natives through participation in several organizations that were created to foster knowledge of science among Native peoples and to help build support and communication networks. One such group is the American Indian Science and Engineering Society (AISES). This group sponsors an annual national meeting in which USGS employees participate. USGS employees join this organization on a voluntary basis, paying the costs themselves, yet bringing the benefits of this expanded network to the USGS, as many employees do with other professional organizations. Each part of the USGS has identified an American Indian/Alaska Native liaison. As USGS moves to a more regional organizational structure, it will establish contacts in the Western, Central, and Eastern Regions. Within the USGS, this report will help in developing outreach, educational, and program documents for use in future years. It is hoped that USGS employees, American Indians, and Alaska Natives will adapt these activities in new areas and will use the USGS contacts to expand the relevance of the USGS to more Americans.

Report↗
USGS2019

Water-quality and geochemical variability in the Little Arkansas River and Equus aquifer, south-central Kansas, 2001–16

The city of Wichita’s water supply currently (2019) comes from two primary sources: Cheney Reservoir and the Equus Beds aquifer. The Equus Beds aquifer storage and recovery project was developed to help the city of Wichita meet increasing future water demands. Source water for artificial recharge comes from the Little Arkansas River during above-base-flow conditions, is treated using National Primary Drinking Water Regulations as a guideline, and is injected into the Equus Beds aquifer through recharge wells or surface spreading basins for later use. The Equus Beds aquifer storage and recovery project currently (2019) consists of two coexisting phases. Phase I began in 2007 and captures Little Arkansas River water and indirect streambank diversion well water for aquifer recharge using 4 wells and 2 recharge basins. Phase II began in 2013 and currently (2019) includes a surface-water treatment facility, a river intake facility, eight recharge injection wells, and a third recharge basin. The U.S. Geological Survey, in cooperation with the City of Wichita, completed this study to summarize water-quality and geochemical variability of the Equus Beds aquifer. Data in this report can be used to establish baseline conditions before implementing artificial aquifer recharge further, document groundwater quality, evaluate changing conditions, identify environmental factors affecting groundwater, provide science-based information for decision making, and help meet regulatory monitoring requirements. Physicochemical properties were measured and water-quality data were collected from 2 Little Arkansas River surface-water sites and 63 Equus Beds aquifer groundwater sites, including 38 areal assessment index wells (IWs) during 2001 through 2016. Data collection included discrete samples and additional continuous measurements at selected sites. Discretely collected samples were analyzed for physicochemical properties, dissolved solids, primary ions, nutrients (nitrogen and phosphorus species), organic carbon, indicator bacteria, trace elements, arsenic species, organic compounds, and radioactivity. This report focuses discussion on aquifer water quality. Federal drinking-water criteria were used to evaluate aquifer water quality. Primary drinking-water criteria are those that are enforceable for public drinking water. Secondary criteria are those that can cause aesthetics or tastes that are unpleasant. Continuously collected data at a subset of sites included streamflow, groundwater levels, water temperature, specific conductance, pH, oxidation-reduction potential (ORP), dissolved oxygen, turbidity, nitrate plus nitrite, and fluorescent dissolved organic matter. Continuous measurement of physicochemical properties in near-real time allowed characterization of Little Arkansas River surface water and Equus Beds aquifer groundwater during conditions and time scales that would not have been possible otherwise and served as a complement to discrete water-quality sampling. During 2001 through 2016, less than 1 percent of chloride and nitrate plus nitrite, 7 percent of dissolved iron, 48 percent of dissolved manganese, 12 percent of dissolved arsenic, and 39 percent of atrazine detections in surface-water samples exceeded their respective Federal primary or secondary drinking-water criteria. None of the surface-water samples collected exceeded the Federal sulfate criterion, and every sample had detections of total coliform bacteria during the study. Constituents of concern in the Equus Beds aquifer exceeded their respective Federal criteria throughout the study period and included chloride, sulfate, nitrate plus nitrite, Escherichia coli ( E. coli ), total coliforms, and dissolved iron and arsenic species. About 5 percent of shallow (less than 80 feet) and 7 percent of deep (greater than 80 feet) IW chloride sample concentrations exceeded the secondary Federal criterion of 250 milligrams per liter (mg/L). Chloride tended to exceed its criterion in shallow and deep wells along the Arkansas River and near Burrton, Kansas, an area with past oil and gas activities. Chloride concentrations near Burrton were larger in the deep parts of the aquifer. About 18 percent of shallow and 13 percent of deep IW sulfate sample concentrations exceeded the secondary Federal criterion of 250 mg/L. Mean sulfate concentrations tended to exceed the criterion in the central part of the study area. Shallow IW mean nitrate plus nitrite (hereafter referred to as “nitrate”) was substantially larger than mean deep IW nitrate. Geochemical conditions in the deeper aquifer reduced forms of nitrogen to species such as ammonia. About 15 percent of shallow and less than 1 percent of deep IW nitrate sample concentrations exceeded the Federal criterion of 10 mg/L. Mean shallow IW nitrate concentrations exceeded the criterion in the northeastern and southeastern parts of the study area; on average, deep IW nitrate concentrations did not exceed the criterion. E. coli and fecal coliform bacteria detections were usually at or near the detection limit. E. coli was detected in 3 percent of shallow and deep IWs, and fecal coliform bacteria were detected in 8 percent of shallow and 6 percent of deep IWs. Total coliforms were detected in 24 percent of shallow and 12 percent of deep IWs. E. coli coliphage was detected in two shallow IW samples (1 percent of samples) at the detection limit and was not detected in deep IW samples. Dissolved iron was detected in 51 percent of shallow and 62 percent of deep IW samples. Dissolved iron concentrations exceeded the secondary Federal criterion of 0.3 mg/L in 38 percent of shallow and 46 percent of deep IW samples. Mean dissolved iron concentrations were largest mostly in the central and northwest part of the study area corresponding to an area of the aquifer where aquifer material is more clay-rich. The distribution of large dissolved iron concentrations was similar to that of large sulfate concentrations. About 55 percent of shallow and 92 percent of deep IW dissolved manganese samples exceeded the secondary Federal criterion of 0.05 mg/L. Almost all samples from the central and northern parts of the study area had mean dissolved manganese concentrations that exceeded the Federal criterion in the shallow part of the aquifer. Mean dissolved manganese concentrations in the shallow part of the aquifer were substantially large (greater than 1,000 micrograms per liter [μg/L]) in wells near the Little Arkansas River and in the central part of the study area because of chemically reducing conditions in the aquifer that likely related to larger percentages of clay in the aquifer material. Concentrations of dissolved arsenic species generally were larger in the deep parts of the aquifer. Arsenite was the dominant form of arsenic on average in shallow (52 percent) and deep (55 percent) IWs. About 12 percent of shallow and 34 percent of deep IW dissolved arsenic sample concentrations exceeded the Federal primary drinking criterion of 10 μg/L. Shallow IW dissolved arsenic concentrations were larger near the Little Arkansas River and the center of the study area; large shallow IW dissolved arsenic concentrations (10–50 μg/L) in the center of the study area correspond to areas that have had the most water-level recovery since the historical low in 1993. Mean ORP in shallow IWs generally decreased with increasing water-level depths and were inversely related to mean dissolved arsenic concentrations because of more reducing conditions (smaller ORP) at larger depths below the land surface. Larger dissolved arsenic concentrations in the shallow parts of the aquifer were associated with decreases in water levels and a subsequent decrease in ORP and thus more reducing conditions. Atrazine was detected in about 58 percent of shallow and 28 percent of deep IWs and did not exceed the primary Federal criterion of 3 μg/L in any groundwater samples. Atrazine concentrations in shallow IWs generally were largest in the northwest part of the study area near the North Branch Kisiwa Creek, and atrazine concentrations in deep IWs generally were largest most often in the southern part of the study area. Gross α radioactivity concentrations exceeded the primary Federal criterion of 15 picocuries per liter in 4 percent of shallow IW samples. Gross α and gross β radioactivity concentrations generally were larger in the southern third of the aquifer. Most groundwater-sample-simulated minerals saturation indices (SIs) were consistently negative (undersaturated). Minerals that had SI values that were consistently or typically positive (oversaturated) included iron oxide, hydroxide, and quartz-group minerals. Several SI values for arsenic- and manganese-bearing minerals were consistently negative. Some manganese-bearing mineral SI values ranged from undersaturated to oversaturated in shallow and deep IWs during the study. Several carbonate minerals in shallow and deep IWs varied across their equilibrium state. Calcite SI values were larger more often in the deep parts of the aquifer and did not show a clear distributional pattern. Mean and median calcite SI values for shallow and deep IWs were negative (undersaturated) indicating the potential for calcite dissolution if calcite is present for a substantial part of the study period. However, some individual calcite SI values in this study indicated saturation and subsequent calcite precipitation may occur in the study area, potentially resulting in formation of calcite mineral deposits that may reduce efficiency of injection wells. SI values with respect to iron hydroxide varied across their equilibrium states. Mean and median SI values with respect to iron hydroxide were undersaturated in shallow and deep IWs; however, some samples had positive SI values indicating there is potential for iron hydroxide precipitation, possibly caused by leaching and oxidation of iron-containing minerals, like pyrite, in the aquifer material.

Kansas↗
USGS2012

Changing climate, changing forests: the impacts of climate change on forests of the northeastern United States and eastern Canada

Decades of study on climatic change and its direct and indirect effects on forest ecosystems provide important insights for forest science, management, and policy. A synthesis of recent research from the northeastern United States and eastern Canada shows that the climate of the region has become warmer and wetter over the past 100 years and that there are more extreme precipitation events. Greater change is projected in the future. The amount of projected future change depends on the emissions scenarios used. Tree species composition of northeast forests has shifted slowly in response to climate for thousands of years. However, current human-accelerated climate change is much more rapid and it is unclear how forests will respond to large changes in suitable habitat. Projections indicate significant declines in suitable habitat for spruce-fir forests and expansion of suitable habitat for oak-dominated forests. Productivity gains that might result from extended growing seasons and carbon dioxide and nitrogen fertilization may be offset by productivity losses associated with the disruption of species assemblages and concurrent stresses associated with potential increases in atmospheric deposition of pollutants, forest fragmentation, and nuisance species. Investigations of links to water and nutrient cycling suggest that changes in evapotranspiration, soil respiration, and mineralization rates could result in significant alterations of key ecosystem processes. Climate change affects the distribution and abundance of many wildlife species in the region through changes in habitat, food availability, thermal tolerances, species interactions such as competition, and susceptibility to parasites and disease. Birds are the most studied northeastern taxa. Twenty-seven of the 38 bird species for which we have adequate long-term records have expanded their ranges predominantly in a northward direction. There is some evidence to suggest that novel species, including pests and pathogens, may be more adept at adjusting to changing climatic conditions, enhancing their competitive ability relative to native species. With the accumulating evidence of climate change and its potential effects, forest stewardship efforts would benefit from integrating climate mitigation and adaptation options in conservation and management plans.

Connecticut;Labrador;Maine;Massachusetts;New Bruns↗
USGS1985

Harmonic analysis of tides and tidal currents in South San Francisco Bay, California

Water level observations from tide stations and current observations from current-meter moorings in South San Francisco Bay (South Bay), California have been harmonically analysed. At each tide station, 13 harmonic constituents have been computed by a least-squares regression without inference. Tides in South Bay are typically mixed; there is a phase lag of approximately 1 h and an amplification of 1·5 from north to south for a mean semi-diurnal tide. Because most of the current-meter records are between 14 and 29 days, only the five most important harmonics have been solved for east-west and north-south velocity components. The eccentricity of tidal-current ellipse is generally very small, which indicates that the tidal current in South Bay is strongly bidirectional. The analyses further show that the principal direction and the magnitude of tidal current are well correlated with the basin bathymetry. Patterns of Eulerian residual circulation deduced from the current-meter data show an anticlockwise gyre to the west and a clockwise gyre to the east of the main channel in the summer months due to the prevailing westerly wind. Opposite trends have been observed during winter when the wind was variable.

California↗
USGS1975

Location of the non-tidal current null zone in northern San Francisco Bay

Variations in Sacramento-San Joaquin River discharge into northern San Francisco Bay causes shifts in location of the bottom density current null zone. At a river flow of 2000 m 3 /s this null zone is approximately 20 km from the seaward end of the estuary, whereas at a river flow of 100 m 3 /s it is 80 km from the seaward end; the corresponding distances of salinity penetration are approximately 40 and 90 km from the seaward end. Seaward of the null zone, during low (summer) river discharge conditions, the inward-flowing bottom density current appears typically strong (5–15 cm/s) relative to the outward-flowing river current (river discharge per unit cross-channel area) of <2 cm/s. Landward from this null zone the average river current increases with decreasing cross-channel area. This circulation implies that during the summer water within the null zone has the longest average advective replacement time relative to water seaward or landward of the null zone.

California↗
USGS2022

Long-term impacts of impervious surface cover change and roadway deicing agent application on chloride concentrations in exurban and suburban watersheds

Roadway deicing agents, including rock salt and brine containing NaCl, have had a profound impact on the water quality and aquatic health of rivers and streams in urbanized areas with temperate climates. Yet, few studies evaluate impacts to watersheds characterized by relatively low impervious surface cover (ISC; < 15 %). Here, we use long-term (1997-2019), monthly streamwater quality data combined with daily streamflow for six exurban and suburban watersheds in southeastern Pennsylvania to examine the relations among chloride (Cl − ) concentrations and ISC. Both flow-normalized Cl − concentrations and ISC increased over time in each of the six watersheds, consistent with changes in watershed management (e.g., ISC, road salt application, etc.). The watersheds that experienced the greatest changes in percent ISC (e.g., agriculture replaced by residential and commercial development) experienced the greatest changes in flow-normalized Cl − concentrations. We also utilized a comprehensive mass-balance model (2011–2018) that indicated Cl − inputs exceeded the outputs for the study watersheds. Road salt applied to state roads, non-state roads, and other impervious surfaces accounted for the majority of Cl − inputs to the six watersheds. Furthermore, increasing Cl − concentrations during baseflow conditions confirm impacts to shallow groundwater. Although flow-normalized Cl − concentrations are below the U.S. Environmental Protection Agency's chronic threshold value for impacts to aquatic organisms, year-round exceedances may result before the end of this century based on current trends. Though reduced Cl − loading to streams may be achieved by limiting the expansion of impervious surfaces in exurban and suburban watersheds, changes in baseflow concentrations are likely to be gradual because of the accumulated Cl − in groundwater.

Pennsylvania↗
USGS2018

Exposure to human-associated chemical markers of fecal contamination and self-reported illness among swimmers at recreational beaches

Anthropogenic chemicals have been proposed as potential markers of human fecal contamination in recreational water. However, to date, there are no published studies describing their relationships with illness risks. Using a cohort of swimmers at seven U.S. beaches, we examined potential associations between the presence of chemical markers of human fecal pollution and self-reported gastrointestinal (GI) illness, diarrhea, and respiratory illness. Swimmers were surveyed about their beach activities, water exposure, and baseline symptoms on the day of their beach visit, and about any illness experienced 10–12 days later. Risk differences were estimated using model-based standardization and adjusted for the swimmer’s age, beach site, sand contact, rainfall, and water temperature. Sixty-two chemical markers were analyzed from daily water samples at freshwater and marine beaches. Of those, 20 were found consistently. With the possible exception of bisphenol A and cholesterol, no chemicals were consistently associated with increased risks of illness. These two chemicals were suggestively associated with 2% and 1% increased risks of GI illness and diarrhea in both freshwater and marine beaches. Additional research using the more sensitive analytic methods currently available for a wider suite of analytes is needed to support the use of chemical biomarkers to quantify illness risk and identify fecal pollution sources.

Alabama, Indiana, Michigan, Mississippi, Ohio, Rho↗
USGS2023

Striped bass exploitation in tailwater habitats of east-central Oklahoma

Striped Bass (Morone saxatilis) is naturally anadromous, but a few land-locked populations have been documented that are self-sustaining, including fish in the Arkansas River, Oklahoma. This rare population is the source of brood stock for the Oklahoma Department of Wildlife Conservation hatcheries and is an important sportfish stock. Striped Bass often congregate in tailwater habitats, where anecdotal observations indicate anglers can harvest numerous fish daily. This suggests the need to evaluate the sustainability of harvest in these locations. It is unknown what portion of fish from the Arkansas River population use tailwater habitats or the timing and duration of use. The objectives of this study were to: 1) determine size structure , abundance, and total mortality rate of Striped Bass in the tailwaters of Tenkiller Lake and Lake Eufaula; 2) determine the extent and timing of immigration and emigration of Striped Bass in tailwater habitats to determine the potential for overharvest when they congregate in tailwater areas; 3) estimate delayed hooking mortality of Striped Bass in spring and summer; and 4) using the above data and modeling simulations, determine the potential for growth overfishing of Striped Bass in the tailwater reaches. We sampled 2,730 Striped Bass using boat electrofishing and tagged with passive integrated transponder (PIT) tags to estimate demographic data using a capture-recapture model. A subset of these Striped Bass was tagged with angler reward tags (internal anchor tags, n = 681) and dual technology acoustic-radio telemetry tags (n = 111) to estimate exploitation and track movements, respectively. Anglers returned 116 tags from 2020 to 2022; and our angler reporting rate was estimated to be 14.3%. Annual harvest mortality is minimally 7% (unadjusted for reporting rate) but could be as high as 42% (i.e., adjusting for compliance; but this exceeds the measured total mortality rate (34.3%) so true exploitation is probably 7–34.3%). Our abundance estimates for Striped Bass varied seasonally (ranging from 782 to 38,597 seasonally) and had a high level of uncertainty likely due to relatively low recapture rates. Additionally, our results indicated that Striped Bass exhibited a strong fidelity to their respective habitats within seasons, with fidelity probabilities ranging from 0.98 to 1.00. Movement among segments was common among seasons, indicating these localized populations mix with a larger population annually. Striped Bass were primarily in tailwater habitats during summer. Delayed hooking mortality data were collected in summer 2022. Due to habitat conditions that year, angling catch rates were low. Twenty-nine Striped Bass were tagged, and only eight Striped Bass remained tagged long enough to be tracked at least one day. The total time tracked for these eight fish was between one and three days. There were no confirmed mortalities, treatment, or control. Because of the low sample size, literature values for delayed hooking mortality were also used to supplement field data in the models. The yield-per-recruit model indicated exploitation at 30% or higher leads to recruitment overfishing. A 600 mm minimum TL regulation and 25–30% exploitation rate achieve maximum yield (954 kg/1,000 recruits). Maximum yield related to an average size at harvest of 718-mm TL; thus, growth overfishing occurs for any regulation where average size of harvest is smaller than 718 mm (which the model predicted would occur for any minimum length < 600, and for minimum length = 600 if exploitation was > 30%, it never occurred with minimum length requirements > 650). Increasing the minimum length regulation improves size structure, but a maximum length regulation had minimal effect unless it was implemented at a sufficiently small size (i.e., < 700 mm). Although catch-and-release mortality can be relatively high at times in the literature, according to our model, it appears to have a small effect on size structure, except when exploitation rates are > 50% and a restrictive maximum size regulation (< 800 mm) is used. The current population appears sustainable, especially considering the annual mixing dynamics and apparently large population (though we see a lot of uncertainty in the population estimates). However, modeling indicates that if enhancing size structure is an agency priority, then implementing more restrictive regulations could be advantageous.

Oklahoma↗
USGS2000

From safe yield to sustainable development of water resources - The Kansas experience

This paper presents a synthesis of water sustainability issues from the hydrologic perspective. It shows that safe yield is a flawed concept and that sustainability is an idea that is broadly used but perhaps not well understood. In general, the sustainable yield of an aquifer must be considerably less than recharge if adequate amounts of water are to be available to sustain both the quantity and quality of streams, springs, wetlands, and ground-water-dependent ecosystems. To ensure sustainability, it is imperative that water limits be established based on hydrologic principles of mass balance. To establish water-use policies and planning horizons, the transition curves of aquifer systems from ground-water storage depletion to induced recharge of surface water need to be developed. Present-day numerical models are capable of generating such transition curves. Several idealized examples of aquifer systems show how this could be done. Because of the complexity of natural systems and the uncertainties in characterizing them, the current philosophy underlying sustainable management of water resources is based on the interconnected systems approach and on adaptive management. Examples of water-resources management from Kansas illustrate some of these concepts in a real-world setting. Some of the hallmarks of Kansas water management are the formation of local ground-water management districts, the adoption of minimum streamflow standards, the use of modified safe-yield policies in some districts, the implementation of integrated resource planning by the City of Wichita, and the subbasin water-resources management program in potential problem areas. These are all appropriate steps toward sustainable development. The Kansas examples show that local decision-making is the best way to fully account for local variability in water management. However, it is imperative that public education and involvement be encouraged, so that system complexities and constraints are better understood and overly simplistic solutions avoided. (C) 2000 Elsevier Science B.V.This paper presents a synthesis of water sustainability issues from the hydrologic perspective. It shows that safe yield is a flawed concept and that sustainability is an idea that is broadly used but perhaps not well understood. In general, the sustainable yield of an aquifer must be considerably less than recharge if adequate amounts of water are to be available to sustain both the quantity and quality of streams, springs, wetlands, and ground-water-dependent ecosystems. To ensure sustainability, it is imperative that water limits be established based on hydrologic principles of mass balance. To establish water-use policies and planning horizons, the transition curves of aquifer systems from ground-water storage depletion to induced recharge of surface water need to be developed. Present-day numerical models are capable of generating such transition curves. Several idealized examples of aquifer systems show how this could be done. Because of the complexity of natural systems and the uncertainties in characterizing them, the current philosophy underlying sustainable management of water resources is based on the interconnected systems approach and on adaptive management. Examples of water-resources management from Kansas illustrate some of these concepts in a real-world setting. Some of the hallmarks of Kansas water management are the formation of local ground-water management districts, the adoption of minimum streamflow standards, the use of modified safe-yield policies in some districts, the implementation of integrated resource planning by the City of Wichita, and the subbasin water-resources management program in potential problem areas. These are all appropriate steps toward sustainable development. The Kansas examples show that local decision-making is the best way to fully account for local variability in water management. However, it is imperative that public education and involv

Journal of Hydrology↗
USGS2021

Mid-latitude ice on Mars: A science target for planetary climate histories and an exploration target for in situ resources

In the last decade, aided by the high-resolution data and long-term monitoring by NASA’s Mars Reconnaissance Orbiter (MRO) and other spacecraft, extensive evidence has emerged supporting the presence of abundant H2O ground ice throughout much of the mid-latitudes of Mars. Growing evidence indicates that much of this ice is relatively pure, exists within a few meters of the surface, and reaches lower latitudes than previously thought, potentially providing an accessible record of the recent climate and a large in situ resource for future human exploration of Mars. We are reaching the limits of currently available datasets, however, just as we are starting to unlock the climate record and determine the water resources contained within the Martian mid-latitudes. A comprehensive understanding of the nature of this ice would significantly enhance our understanding of Mars’ climate history and total water budget, as well as the effects of orbital/axial forcing on volatiles. In this regard, Mars is a testbed for comparative planetary climate studies, including for exoplanets; these studies are particularly valuable because Mars has many similarities to Earth but lacks the complicating effects of oceans and a biosphere, such that orbital/axial forcing dominates climate variability. Quantifying the volumes, distribution, and properties of the water ice are crucial for addressing two overarching questions in the next decade: 1. What climate record is preserved in mid-latitude ice deposits on Mars? 2. How accessible is the ice as a resource for future exploration? New missions will enable us to capitalize on the major discoveries of the last decade and take the next giant leap in the upcoming decade to address these questions.

Bulletin of the AAS↗
USGS2025

U.S. Geological Survey science strategy to address highly pathogenic avian influenza and its effects on wildlife health 2025–29

Executive Summary Highly pathogenic avian influenza (HPAI) is an ecologically and economically important animal disease that can also directly affect humans (a “zoonotic” disease). HPAI was once limited almost exclusively to domestic poultry but has rapidly adapted to diverse animal hosts. Viruses causing HPAI now appear to be maintained and dispersed by wild birds largely independent of poultry, though HPAI continues to cause considerable economic losses and supply chain disruptions in the domestic poultry trade. Coincident with the adaptation of HPAI viruses to wild birds, particularly waterfowl and gulls, increasingly diverse wild bird hosts are becoming exposed to HPAI, often resulting in disease and death. More sporadically, HPAI has caused mass mortality events, particularly among seabirds. Furthermore, viral spillover to wild and domestic mammals has become more common. Spillover to wild mammals has resulted in mortality among diverse terrestrial and marine taxa, including episodic losses of such scale as to represent potential conservation challenges. Since approximately March 2024, HPAI has also affected dairy cows, which represents a new threat to the agricultural economy. Lastly, HPAI has increasingly affected humans through domestic animal exposures, exemplifying the considerable implications of this disease beyond animal health. Rapid changes in the ecology of HPAI are currently outpacing research efforts. For example, it is not entirely clear which newly established hosts may become reservoirs for HPAI viruses (in other words, capable of maintaining HPAI viruses within a broad population indefinitely) and how this may influence viral evolution and dissemination. As a result, there are considerable information gaps regarding HPAI in wildlife that, if filled, would improve the ability of scientists, managers, agricultural industry representatives, and healthcare professionals to understand and to anticipate the effects of HPAI on wild animal, domestic animal, environmental, and human health (“One Health”). The U.S. Geological Survey (USGS) is the lead Federal agency providing scientific research on avian influenza viruses (AIVs), including HPAI viruses, that affect wildlife for which the Department of the Interior (DOI) has management authority. States have jurisdiction over wildlife on Federal lands within their borders (43 CFR § 24.3), so the USGS Ecosystems Mission Area (EMA) coordinates with State natural resource management agencies. The EMA focuses its research on HPAI through priorities identified by the USGS Avian Influenza Science Team ( app. 1 ). Priorities identified by the USGS Avian Influenza Science Team are based on Administration priorities, Congressional direction, and discussions with State, Federal, and Tribal natural resource management agencies that identify specific scientific gaps that need to be filled to inform sound wildlife management decisions. Notable non-DOI Federal partners include the U.S. Department of Agriculture, the lead for the HPAI regulatory response in poultry and livestock, and the Centers for Disease Control and Prevention (CDC), the lead agency for the HPAI response pertaining to human health. The USGS offers unique expertise and capacity pertaining to research on diseases affecting free-ranging wildlife populations. This expertise has been critical to interjurisdictional surveillance and capacity-building efforts, including programs administered by the U.S. Department of Agriculture and the CDC. The USGS also provides resources, guidance, and tools to inform surveillance and interventions conducted by natural resource management agencies. More specifically, the USGS EMA provides objective and rigorous scientific data for inferring (1) the utility of new methods to detect and characterize AIVs, including those maintained in wildlife and the environment; (2) effects of HPAI on wildlife; (3) spatiotemporal patterns of wildlife host and AIV dispersal; (4) the presence and persistence of AIVs in the environment; (5) how HPAI in wildlife influences consumptive and nonconsumptive utilization of wildlife; (6) how new tools and scientific methods may promote sound management decisions for HPAI-affected wildlife, particularly species of conservation concern; and (7) the combined effects of HPAI and other stressors on ecosystem health and resiliency. This science strategy builds upon research outlined in a previous USGS science strategy for HPAI (2016–20) by Harris and others (2016) . This strategy also details research priorities identified by the Administration (for example, U.S. Department of Agriculture, 2025 ) and others based on USGS Avian Influenza Science Team discussions with natural resource management agencies to address HPAI and wildlife health over the next 5 years (2025–29). This strategy presents 7 goals and 26 objectives that focus USGS and partner efforts on priorities that will fill data gaps regarding the effects of HPAI on wildlife managed by or co-managed with the U.S. Department of the Interior such that agencies and partners might anticipate or limit adverse effects on public resources. This strategy also identifies research priorities intended to address HPAI in wildlife and wildlife habitat that are anticipated to support interjurisdictional One Health efforts.

Circular↗
USGS2025

Principles of riverscape health

Riverscapes are the integration of terrestrial and aquatic systems from headwaters to estuaries that provide habitat and ecosystem benefits when in good health. However, current riverscape degradation is pervasive, impairing the function and resulting benefits of these systems. Healthy riverscapes are adaptive and some can ‘heal’ after disturbance with minimal to no human assistance. As riverscape health is threatened, a need exists to address current degradation and understand the potential for riverscape restoration—concisely communicating what comprises healthy riverscapes is essential to direct limited resources and increase efficacy of restoration and conservation efforts. Healthy riverscapes have (i) space to interact within their valley bottom; (ii) natural flow, sediment, and vegetation regimes appropriate to the biophysical setting and river type; and (iii) structural forcing to support diversity and that creates varied residence times for water, sediment, and vegetation. These three principles are grounded in interdisciplinary science and lessons from riverscape scientists and restoration practitioners across the world. Understanding the context, anthropogenic influences, boundary conditions, and legacy effects influencing riverscapes is essential for the appropriate application of these principles in pursuit of achieving riverscape health. Emphasizing a holistic, biogeomorphic view of riverscapes through these principles can guide policies, restoration actions, and monitoring frameworks that ensure that riverscapes remain capable of accommodating and adjusting to disturbances while continuing to support biodiversity and human benefits.

WIREsWATER (Wiley Interdisciplinary Reviews Primer↗
USGS2026

Semantic segmentation of light-toned veins in multimodal ChemCam data

Since the Mars Science Laboratory landed in 2012, the ChemCam instrument aboard the rover has collected in-situ laser-induced breakdown spectroscopy (LIBS) data and context images along more than 35 km of the Gale Crater traverse, providing valuable observations including diagenetic features such as light-toned veins. These veins are of particular scientific interest because they are interpreted as indicators of past fluid circulation on Mars and provide insights into the evolution of habitability on Mars. Their identification, however, currently relies on manual visual inspection of Remote Micro Imager (RMI) images, a process that is time-consuming and sensitive to differences in human interpretation. To address this issue, in this paper we introduce a novel pixel-level labeled, multimodal dataset of ChemCam observations specifically tailored for vein detection, along with customized U-Net models to integrate both textural (RMI) and chemical (LIBS) modalities. To further ensure trustworthy scientific use, we incorporate the Learn-Then-Test (LTT) framework to provide statistical control of the false discovery rate without requiring model retraining. The experimental results demonstrate that the proposed customized U-Net models trained on the developed dataset, combined with risk-controlled prediction, increases the efficiency of pixel-level vein identification through automation and produces statistically reliable predictions for multimodal ChemCam data.

Scientific Reports↗
USGS2007

Consistency of L4 TM absolute calibration with respect to the L5 TM sensor based on near-simultaneous image acquisition

The Landsat archive provides more than 35 years of uninterrupted multispectral remotely sensed data of Earth observations. Since 1972, Landsat missions have carried different types of sensors, from the Return Beam Vidicon (RBV) camera to the Enhanced Thematic Mapper Plus (ETM+). However, the Thematic Mapper (TM) sensors on Landsat 4 (L4) and Landsat 5 (L5), launched in 1982 and 1984 respectively, are the backbone of an extensive archive. Effective April 2, 2007, the radiometric calibration of L5 TM data processed and distributed by the U.S. Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) was updated to use an improved lifetime gain model, based on the instrument's detector response to pseudo-invariant desert site data and cross-calibration with the L7 ETM+. However, no modifications were ever made to the radiometric calibration procedure of the Landsat 4 (L4) TM data. The L4 TM radiometric calibration procedure has continued to use the Internal Calibrator (IC) based calibration algorithms and the post calibration dynamic ranges, as previously defined. To evaluate the "current" absolute accuracy of these two sensors, image pairs from the L5 TM and L4 TM sensors were compared. The number of coincident image pairs in the USGS EROS archive is limited, so the scene selection for the cross-calibration studies proved to be a challenge. Additionally, because of the lack of near-simultaneous images available over well-characterized and traditionally used calibration sites, alternate sites that have high reflectance, large dynamic range, high spatial uniformity, high sun elevation, and minimal cloud cover were investigated. The alternate sites were identified in Yuma, Iraq, Egypt, Libya, and Algeria. The cross-calibration approach involved comparing image statistics derived from large common areas observed eight days apart by the two sensors. This paper summarizes the average percent differences in reflectance estimates obtained between the two sensors. The work presented in this paper is a first step in understanding the current performance of L4 TM absolute calibration and potentially serves as a platform to revise and improve the radiometric calibration procedures implemented for the processing of L4 TM data.

Conference Paper↗
USGS2017

Sharing our data—An overview of current (2016) USGS policies and practices for publishing data on ScienceBase and an example interactive mapping application

This report provides an overview of current (2016) U.S. Geological Survey policies and practices related to publishing data on ScienceBase, and an example interactive mapping application to display those data. ScienceBase is an integrated data sharing platform managed by the U.S. Geological Survey. This report describes resources that U.S. Geological Survey Scientists can use for writing data management plans, formatting data, and creating metadata, as well as for data and metadata review, uploading data and metadata to ScienceBase, and sharing metadata through the U.S. Geological Survey Science Data Catalog. Because data publishing policies and practices are evolving, scientists should consult the resources cited in this paper for definitive policy information. An example is provided where, using the content of a published ScienceBase data release that is associated with an interpretive product, a simple user interface is constructed to demonstrate how the open source capabilities of the R programming language and environment can interact with the properties and objects of the ScienceBase item and be used to generate interactive maps.

Open-File Report↗
USGS2023

Status and trends of the Lake Huron prey fish community, 1976-2022

The United States Geological Survey-Great Lakes Science Center has monitored annual changes in the offshore prey fish community of Lake Huron since 1973. Monitoring of prey fish populations in Lake Huron is based on a bottom trawl survey that targets demersal (benthic) species and an acoustic-midwater trawl survey that targets pelagic species and life stages. Status of the main basin prey fish community in 2022 was considered ‘Fair’ due to sustained improvements in native species status but species diversity that remains below desired levels. Current lake conditions, characterized by ongoing oligotrophication, seem to favor native coregonines like Bloater ( Coregonus artedi ), which in the main basin has exhibited signs of population growth and strong recruitment in recent years, and Cisco ( Coregonus artedi ), whose biomass in the North Channel increased for the second consecutive year in 2022. In contrast, conditions in the main basin are less favorable for exotic prey fish such as Alewife ( Alosa pseudoharengus ), whose population collapsed in 2014 and has not recovered, and Rainbow Smelt ( Osmerus mordax ), which remains the second-most abundant prey species in the main basin but has produced multiple weak year classes over the past decade including in 2022. Status of benthic prey fish in the main basin in 2022 depended on species. As in prior years, the native sculpin community in 2022 consisted primarily of Deepwater Sculpin ( Myoxocephalus thompsoni ) because Slimy Sculpin ( Cottus cognatus ) has become exceedingly rare. In contrast, biomass of the ecologically similar Round Goby ( Neogobius melanostomus ), an exotic species, reached an all-time high in 2022. Use of complementary surveys (bottom trawl, acoustics) remains important for evaluating prey fish status in Lake Huron, where prey fish community dynamics vary by basin and prey fish responses to changing environmental conditions depend on species and/or habitat.

Lake Huron↗
USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗
USGS2022

Comparison of radium analytical methods for municipal drinking water well operation

Radium (Ra) is a geogenic contaminant that occurs at high levels in the Midwestern Cambrian-Ordovician aquifer system (MCOAS), a regionally important sandstone and carbonate drinking water aquifer. Water utilities using the MCOAS often must adopt treatment methods or use alternative water sources to maintain high-quality drinking water. Here, we show that Ra in water obtained from a municipal well in Wisconsin remains consistent despite variation in pumping conditions. However, widely used analytical methods (e.g., scintillation counting) for measuring Ra are less precise for quantifying Ra variability given the site conditions. Although not currently used for EPA compliance, mass spectrometry improves the precision of Ra measurements by an order of magnitude over the currently used counting method (e.g., 95 ± 3 mBq/L vs. 110 ± 30 mBq/L) at the concentrations observed in this study. The use of more precise analytical methods will increase understanding of trends in Ra levels important for operating public water systems.

Water Science and Engineering↗