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USGS2020

A global parasite conservation plan

Found throughout the tree of life and in every ecosystem, parasites are some of the most diverse, ecologically important animals on Earth—but in almost all cases, the least protected by wildlife or ecosystem conservation efforts. For decades, ecologists have been calling for research to understand parasites' important ecological role, and increasingly, to protect as many species from extinction as possible. However, most conservationists still work within priority systems for funding and effort that exclude or ignore parasites, or treat parasites as an obstacle to be overcome. Our working group identified 12 goals for the next decade that could advance parasite biodiversity conservation through an ambitious mix of research, advocacy, and management.

Biological Conservation↗

USGS2020

Moving from decision to action in conservation science

Biodiversity loss is a major threat to the integrity of ecosystems and is projected to worsen, yet the path to successful conservation remains elusive. Decision support frameworks (DSFs) are increasingly applied by resource managers to navigate the complexity, uncertainty, and differing socio-ecological objectives inherent to conservation problems. Most published conservation research that uses DSFs focuses on analytical stages (e.g., identifying an optimal decision), making it difficult to assess and learn from previous examples in a conservation practice context. Here, we (1) evaluate the relationship between the application of decision science and the resulting conservation outcomes, and (2) identify and address existing barriers to the application of DSFs to conservation practice. To do this, we develop a framework for evaluating conservation initiatives using decision science that emphasizes setting attainable goals, building momentum, and obtaining partner buy-in. We apply this framework to a systematic review of amphibian conservation decision support projects, including a follow-up survey of the pertinent conservation practitioners, stakeholders, and scientists. We found that all projects identified optimal solutions to reach stated objectives, but positive conservation outcomes were limited when implementation challenges arose. Further, we identified multiple barriers (e.g., dynamic and hierarchical leadership, scale complexity, limited resource availability) that can inhibit the progression from decision identification to action implementation (i.e., ‘decision-implementation gap’), and to successful conservation outcomes. Based on these results, we provide potential actionable steps and avenues for future development of DSFs to facilitate the transition from decision to action and the realization of conservation successes.

Biological Conservation↗

USGS2020

Agricultural land-use change alters the structure and diversity of Amazon riparian forests

Riparian forests play key roles in protecting biodiversity and water resources , making them priorities for conservation in human-dominated landscapes, but fragmentation associated with expanding tropical croplands threatens their ecological integrity. We compared the structure of tropical riparian forests within intact and cropland catchments in a region of intensive soybean production in the southeastern Brazilian Amazon. We studied forest plots (varying from 120 to 210 m long) that bisected riparian zone forests and headwater streams in ten catchments. Four plots were within large areas of intact primary forest and six were in bands of protected riparian forest along streams within croplands as required by the Brazilian Forest Code. We found that riparian forests in croplands harbored fewer species of trees and seedlings/saplings, and had higher proportions of opportunistic, pioneer tree species. We also found greater variation in tree species composition, and higher internal dissimilarity in croplands compared with forests. The observed patterns in tree species composition were driven mainly by differences between riparian forest-cropland edges and those bordering intact upland forests. Forests nearest to streams in cropland and forested catchments were more similar to one another. Results suggest that wider buffers are needed at the edges of croplands to maintain riparian forest structure. The minimum 30-m riparian buffers now required by the Brazilian Forest Code may thus be insufficient to prevent long-term shifts in riparian forest species composition and structure.

Biological Conservation↗

USGS2021

Effective population size remains a suitable, pragmatic indicator of genetic diversity for all species, including forest trees

Fady & Bozzano highlight some challenges to a proposed Convention on Biological Diversity (CBD) indicator of genetic diversity based on effective population size, Ne ( Fady and Bozzano, 2020 ; Hoban et al., 2020 ). We appreciate the thoughtful debate and concur that genetic diversity indicators must be reliable and scalable. We fully agree that “genetic diversity should be better considered in the CBD post-2020 framework to prevent the irreplaceable loss of biodiversity… existing indicators are far from satisfactory.” As Fady & Bozzano state, Ne is essential for monitoring vital aspects of genetic diversity: loss of genetic diversity due to drift (genetic erosion), inbreeding rate (genetic health), and potential for adaptation and long term survival (resilience) ( Fady and Bozzano, 2020 ).

Biological Conservation↗

USGS2024

Vaccination of endangered wildlife as a conservation tool: Hindsights and new horizons in the pandemic era

Vaccines are an established conservation tool that can reduce the threat of infectious disease in endangered wildlife populations. Vaccines exist for many infectious pathogens, and at a time of rapid technological advances in vaccinology, developing vaccines and vaccination programs for free-living endangered wildlife could help efforts to prevent extinctions from disease threats. Vaccination efforts could focus on protecting members of the target species or could be directed at reservoir populations to prevent pathogen spillover. Vaccination strategies need to be substantiated by research on safety and effectiveness, include risk and feasibility assessments, account for differences in host biology and disease epidemiology, and align with relevant regulatory frameworks. Engagement with stakeholders and the public is important to ensure the success of endangered species vaccination programs. Challenges such as funding, regulation, and societal acceptance are barriers to progress in vaccination programs for some species and geographic regions. We recommend the development of scientifically based international guidelines and a transdisciplinary forum with a specific emphasis on endangered wildlife vaccination. New technologies could be used collaboratively to prevent transmission of diseases for which vaccines are not currently available. Careful approaches and enhanced collaborations could help ensure the successful development of wildlife vaccination programs and promote resilience of endangered wildlife populations to increasing anthropogenic and environmental stressors on biodiversity.

Biological Conservation↗

USGS2025

Coexistence beyond disciplinary silos: Five dimensions of analysis for more convivial human-predator interactions

Understanding human-predator interactions has been a central goal of conservation for decades, yet many previous efforts have approached this challenge from disciplinary perspectives focused on single case studies. There is a need for more transdisciplinary and multi-sited research to enrich our understandings of the complexity of human-nonhuman interactions and to design ways to make them more convivial. The multi-year CONVIVA “convivial conservation” research project addressed this gap, involving scholars from natural sciences, social sciences and humanities to promote coexistence, biodiversity and justice in conservation across four diverse case studies of apex predators: jaguars in Brazil, wolves in Finland, lions in Tanzania, and brown bears in California, United States. In this article, we set out two key contributions. First, we highlight how our project created iterative, dialogue-based reflections amongst different disciplines and perspectives to inform research questions, methods and units of analysis, fulfilling what we see as a key need in the literature. Second, we operationalise our collaboration beyond disciplinary silos into a novel framework of five interconnected dimensions of analysis, that characterise human-predator interactions, drawing on a range of lenses and including a series of guiding questions. We also showcase empirical material from our cases across wildlife, environment, interactions, institutions and justice dimensions. We present our approach, framework and findings with collective reflections and an invitation for adaptation and further research on their suitability to other contexts and species.

Biological Conservation↗

USGS2026

Wildfire smoke reduces the vocal activity of imperiled grassland birds in New York State

Smoke from new fire regimes driven by climate change may affect biodiversity in new regions of the world. Wildfires that occurred in eastern Canada in 2023 burned nearly 7.8 million hectares of forest, sending smoke throughout the northeastern United States. We leveraged passive acoustic monitoring to investigate real-time effects of wildfire smoke on vocalization behavior of globally imperiled grassland birds during the breeding season in open land covers across New York State. We determined an overall negative effect of elevated smoke levels on breeding grassland bird vocal activity. We observed the strongest vocalization responses in Bobolink ( Dolichonyx oryzivorus ) – a colonial breeding, grassland-obligate species; Bobolink vocal activity sharply dropped during intense smoke early in the breeding season, yet increased during a milder smoke event later in the breeding season. Our results indicate that wildfire smoke can present an additive stressor to already imperiled grassland bird species via potential fitness reductions from decreased communication. While some aspects of smoke exposure may be uncontrollable, our results suggest that increased attention to conservation practices that promote grassland birds in the Northeast could be prioritized to offset negative effects of increased smoke associated with global change.

New York↗

USGS2018

New global high-resolution centerlines dataset of selected river systems

We present the first high resolution (1:20,000) river centerlines shapefiles from 50 large rivers across the world. Rivers were selected based on the criteria of having more than 1000 km length and which have been reported to have a significant contribution to global fishery production. Since large rivers often span multiple countries, the degree of changes (i.e., anthropogenic or climate derived) varies from region to region. These high-resolution layers were developed to enable researchers to delineate accurate river length, from headwaters regions to their delta and assess or visualize the ongoing changes more accurately in these river systems. Further, these polylines could be used in coordination with satellite derived environmental or landscape variables for ecological research (e.g. predicting biodiversity, estimating biomass).

Data in Brief↗

USGS2022

Shifting precipitation regimes alter the phenology and population dynamics of low latitude ectotherms

Predicting how species respond to changes in climate is critical to conserving biodiversity. Modeling efforts to date have largely centered on predicting the effects of warming temperatures on temperate species phenology. In and near the tropics, the effects of a warming planet on species phenology are more likely to be driven by changes in the seasonal precipitation cycle rather than temperature. To demonstrate the importance of considering precipitation-driven phenology in ecological studies, we present a case study wherein we construct a mechanistic population model for a rare subtropical butterfly (Miami blue butterfly, Cyclargus thomasi bethunebakeri ) and use a suite of global climate models to project butterfly populations into the future. Across all iterations of the model, the trajectory of Miami blue populations is uncertain. We identify both biological uncertainty (unknown diapause survival rate) and climate uncertainty (ambiguity in the sign of precipitation change across climate models), and their interaction as key factors that determine persistence vs. extinction. Despite uncertainty, the most optimistic iteration of the model predicts that Miami blue butterfly populations will decline under the higher emissions scenario (RCP 8.5). The lack of climate model agreement across the projection ensemble suggests that investigations into the effect of climate change on precipitation-driven phenology require a higher level of rigor in the uncertainty analysis compared to analogous studies of temperature. For tropical species, a mechanistic approach that incorporates both biological and climate uncertainty is the best path forward to understand the effect shifting precipitation regimes have on phenology and population dynamics.

Florida↗

USGS2017

The practice of prediction: What can ecologists learn from applied, ecology-related fields?

The pervasive influence of human induced global environmental change affects biodiversity across the globe, and there is great uncertainty as to how the biosphere will react on short and longer time scales. To adapt to what the future holds and to manage the impacts of global change, scientists need to predict the expected effects with some confidence and communicate these predictions to policy makers. However, recent reviews found that we currently lack a clear understanding of how predictable ecology is, with views seeing it as mostly unpredictable to potentially predictable, at least over short time frames. However, in applied, ecology-related fields predictions are more commonly formulated and reported, as well as evaluated in hindsight, potentially allowing one to define baselines of predictive proficiency in these fields. We searched the literature for representative case studies in these fields and collected information about modeling approaches, target variables of prediction, predictive proficiency achieved, as well as the availability of data to parameterize predictive models. We find that some fields such as epidemiology achieve high predictive proficiency, but even in the more predictive fields proficiency is evaluated in different ways. Both phenomenological and mechanistic approaches are used in most fields, but differences are often small, with no clear superiority of one approach over the other. Data availability is limiting in most fields, with long-term studies being rare and detailed data for parameterizing mechanistic models being in short supply. We suggest that ecologists adopt a more rigorous approach to report and assess predictive proficiency, and embrace the challenges of real world decision making to strengthen the practice of prediction in ecology.

Ecological Complexity↗

USGS2026

Toxicity of anticoagulant rodenticides on Pacific salmon: Assessing lethal and sublethal effects

To restore native biodiversity on island ecosystems containing invasive rodents, partial- and whole-island eradications generally rely on broadcast baiting with anticoagulant rodenticides (ARs). This approach can result in bait pellets entering aquatic environments, raising concerns about effects to non-target fish. Salmonids are a dominant group of fishes on many temperate islands targeted for rodent eradication, and AR toxicity data for salmonids are limited. Our goal was to determine if coho salmon ( Oncorhynchus kisutch ) are susceptible to coagulopathy and death via exposure to commonly used ARs. We assessed risk of ARs to coho using dose-response curves generated through intraperitoneal injections after determining that coho would not directly ingest the AR baits. Median lethal doses (96-h LD 50 ) estimated using 100 % corn oil carrier were 85.7 µg/g for brodifacoum and 54.0 µg/g for diphacinone. Acetone (30–41 %), used to dissolve ARs in corn oil, reduced the toxicity of diphacinone (LD 50 = 102.3 µg/g, p < 0.001) but not brodifacoum (LD 50 = 73.3 µg/g, p = 0.126) indicating that solvent choice can influence toxicity outcomes. Behavioral changes and onset of mortality differed between the two ARs, with diphacinone acting more rapidly. Tissue analysis supported a difference in toxicokinetics between the two ARs, with significant decreases in liver and muscle residues for diphacinone but not brodifacoum. Sublethal brodifacoum exposure (53.9 µg/g; LD 13 ) impaired blood clotting at 72- and 96- h but returned to baseline by 120 h. No clotting impairment was observed up to 144 h after diphacinone exposure (45.5 µg/g; LD 4 ), suggesting a non-coagulopathy mode of action. These findings will inform risk assessments when considering use of these ARs for rodent management near streams and shorelines and clearly demonstrate that brodifacoum causes coagulopathy in coho.

Ecotoxciology and Environmental Safety↗

USGS2023

Invaders at the doorstep: Using species distribution modeling to enhance invasive plant watch lists

Watch lists of invasive species that threaten a particular land management unit are useful tools because they can draw attention to invasive species at the very early stages of invasion when early detection and rapid response efforts are often most successful. However, watch lists typically rely on the subjective selection of invasive species by experts or on the use of spotty occurrence records. Further, incomplete records of invasive plant occurrences bias these watch lists towards the inclusion of invasive plant species that may already be present in a land management unit, because the occurrences have not been formally integrated into publicly accessible biodiversity databases. However, these problems may be overcome by an iterative approach that guides more complete detection and compilation of invasive plant species records within land management units. To address issues from unobserved or unrecorded occurrences, we combined predicted suitable habitat from species distribution models and aggregated invasive plant occurrence records to develop ranked watch lists of 146 priority invasive plant species on >4000 land management units from five different administrative types within the United States. Based on this analysis, we determined that on average 84% of priority invasive plants with suitable habitat within a given land management unit were as yet unobserved, and that 41% of those were ‘doorstep species’ – found within 50 miles of the unit boundary yet not detected within the unit. Two case studies, developed in collaboration with staff at U.S. Fish and Wildlife Service Refuges, showed that by combining both habitat suitability models and invasive plant occurrence records, we could identify additional problematic invasive plants that had been previously overlooked. Model-based watch lists of ‘doorstep species’ are useful tools because they can objectively alert land managers to threats from invasive plants with high likelihood of establishment.

contiguous United States↗

USGS2024

A spatiotemporal optimization engine for prescribed burning in the Southeast US

Many ecosystems in the Southeast US are dependent upon frequent low-intensity surface fires to sustain native biodiversity, ecosystem services, and endangered species populations. Today, landscape-scale prescribed fire is required to manage these systems for conservation objectives and to mitigate wildland fire risk. Successful application of prescribed fire in this region requires careful planning and assessment of the risks and tradeoffs involved when deciding whether or not to conduct a burn. Many of these risks are closely tied to ambient environmental conditions and are reflected in sets of ‘prescription’ parameters that define safe and effective operating conditions to meet objectives or regulatory requirements. To facilitate effective decision making and acknowledge growing uncertainties related to climate change effects on wildland fire operations, we developed a spatiotemporal optimization engine to identify near-term optimal burning opportunities for prescribed fire implementation. By mining historical 3-day numerical weather forecasts and observation-based weather data for 2015–2021, we have developed a Bayesian hierarchical model for forecast verification that provides calibrated daily weather forecasts and joint uncertainty estimates on meteorological variables of interest, with the latter serving as a measure of risk associated with prescribed fire activities. Burn allocation decisions are then optimized by considering this risk jointly with the utility of burning a particular habitat parcel. The initial iteration of the optimization engine is demonstrated through a case study of short-term meteorological conditions for the Eglin Air Force Base, located in Florida, USA. Results indicate agreement between the optimization engine and the observed past decision-making, with the largest divergences likely arising primarily from differences between utility functions presumed important and used to develop the optimization engine versus the true utility functions driving management behavior in practice.

Florida↗

USGS2022

Grassland conservation supports migratory birds and produces economic benefits for the commercial beekeeping industry in the U.S. Great Plains

Although declines in grassland birds have been documented, national initiatives to conserve grasslands and their biota have fallen short in part because the non-market values of natural ecosystems and species are often not recognized in political decision making. Identifying shared, anthropogenic threats faced by market-valued and non-market-valued species may generate additional support for grassland conservation. We quantify the relationship between the market value of grasslands to commercial beekeepers and the importance of grasslands for birds of conservation concern in North and South Dakota. Our models estimated beekeeping annual revenue increased by $7525 USD and grassland bird abundances increased 2 to 7% per 10-km 2 increase in grassland area. We estimated grassland conversion from 2006 to 2012 resulted in a $2.0 to $2.8 M USD decrease in annual revenue for beekeepers in the Dakotas. Through this study we demonstrate both the market value of grasslands to commercial beekeepers and the non-market benefits of grasslands in supporting migratory birds and discuss the implications of future land-use change. As grassland conversion and subsequent biodiversity loss continue, understanding the co-benefits of grassland conservation may be necessary to illuminate their contributions to society.

North Dakota, South Dakota↗

USGS2014

Remote sensing analysis of riparian vegetation response to desert marsh restoration in the Mexican Highlands

Desert marshes, or cienegas, are extremely biodiverse habitats imperiled by anthropogenic demands for water and changing climates. Given their widespread loss and increased recognition, remarkably little is known about restoration techniques. In this study, we examine the effects of gabions (wire baskets filled with rocks used as dams) on vegetation in the Cienega San Bernardino, in the Arizona, Sonora portion of the US-Mexico border, using a remote-sensing analysis coupled with field data. The Normalized Difference Vegetation Index (NDVI), used here as a proxy for plant biomass, is compared at gabion and control sites over a 27-year period during the driest months (May/June). Over this period, green-up occurred at most sites where there were gabions and at a few of the control sites where gabions had not been constructed. When we statistically controlled for differences among sites in source area, stream order, elevation, and interannual winter rainfall, as well as comparisons of before and after the initiation of gabion construction, vegetation increased around gabions yet did not change (or decreased) where there were no gabions. We found that NDVI does not vary with precipitation inputs prior to construction of gabions but demonstrates a strong response to precipitation after the gabions are built. Field data describing plant cover, species richness, and species composition document increases from 2000 to 2012 and corroborate reestablished biomass at gabions. Our findings validate that gabions can be used to restore riparian vegetation and potentially ameliorate drought conditions in a desert cienega.

Ecological Engineering↗

USGS2017

Evapotranspiration by remote sensing: An analysis of the Colorado River Delta before and after the Minute 319 pulse flow to Mexico

The unique hydrologic conditions characterizing riparian ecosystems in dryland (arid and semi-arid) areas help maintain high biodiversity and support high levels of primary productivity compared to associated uplands. In western North America, many riparian ecosystems have been damaged by altered flow regimes (e.g., impoundments and diversions) and over utilization of water resources (e.g., groundwater pumping for agriculture and human consumption). This has led some state and national governments to provide occasional environmental flows to address the declining condition of such riparian systems. In a historic agreement between the United States and Mexico, 130 million cubic meters (mcm) of water was released to the lower Colorado River Delta in Mexico, with the intent to evaluate the hydrological and biological response of the ecosystem. We used the Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) to estimate long term (2000–2014) and short term (pre- and post-pulse; 2013 and 2014) evapotranspiration (ET; used herein as an indicator of plant health) of the delta’s riparian corridor. We found the pulse flow helped reverse a decline in ET from 2011 to 2013, with a small, but statistically significant increase in 2014 (P < 0.05). ET was greater than 100 mcm in all years analyzed (even in years without surface flows) and exceeded surface flows in all years except 2000 (result of excess flows following an El Niño cycle in 1997) and 2014 (year of the pulse flow). Based on groundwater salinities and MODIS ET estimates, we estimated groundwater flow into the delta to be ∼103 mcm. Shallow groundwater salinities in the riparian zone increased from 1.30 g L −1 in the most upstream reach to 2.77 g L −1 in the most downstream reach we measured, partly due to uptake of water by riparian vegetation and partly to intrusion of saline agricultural return flows. The disparity between surface flows and ET can likely be explained by the predominantly phreatophytic plants characterizing the area, which draw water from the aquifer. These results also suggest that the deteriorated condition of vegetation within the riparian zone might not be reversed by a single pulse event and could instead require subsequent pulse flows as a long term strategy to restore vegetation in this riparian ecosystem.

Ecological Engineering↗

USGS2015

Phenology and climate relationships in aspen (Populus tremuloides Michx.) forest and woodland communities of southwestern Colorado

Trembling aspen ( Populus tremuloides Michx.) occurs over wide geographical, latitudinal, elevational, and environmental gradients, making it a favorable candidate for a study of phenology and climate relationships. Aspen forests and woodlands provide numerous ecosystem services, such as high primary productivity and biodiversity, retention and storage of environmental variables (precipitation, temperature, snow–water equivalent) that affect the spring and fall phenology of the aspen woodland communities of southwestern Colorado. We assessed the land surface phenology of aspen woodlands using two phenology indices, start of season time (SOST) and end of season time (EOST), from the U.S. Geological Survey (USGS) database of conterminous U.S. phenological indicators over an 11-year time period (2001–2011). These indicators were developed with 250 m resolution remotely sensed data from the Moderate Resolution Imaging Spectroradiometer processed to highlight vegetation response. We compiled data on SOST, EOST, elevation, precipitation, air temperature, and snow water equivalent (SWE) for selected sites having more than 80% cover by aspen woodland communities. In the 11-year time frame of our study, EOST had significant positive correlation with minimum fall temperature and significant negative correlation with fall precipitation. SOST had a significant positive correlation with spring SWE and spring maximum temperature.

Colorado↗

USGS2016

Development and assessment of indices to determine stream fish vulnerability to climate change and habitat alteration

Understanding the future impacts of climate and land use change are critical for long-term biodiversity conservation. We developed and compared two indices to assess the vulnerability of stream fish in Missouri, USA based on species environmental tolerances, rarity, range size, dispersal ability and on the average connectivity of the streams occupied by each species. These two indices differed in how environmental tolerance was classified (i.e., vulnerability to habitat alteration, changes in stream temperature, and changes to flow regimes). Environmental tolerance was classified based on measured species responses to habitat alteration, and extremes in stream temperatures and flow conditions for one index, while environmental tolerance for the second index was based on species’ traits. The indices were compared to determine if vulnerability scores differed by index or state listing status. We also evaluated the spatial distribution of species classified as vulnerable to habitat alteration, changes in stream temperature, and change in flow regimes. Vulnerability scores were calculated for all 133 species with the trait association index, while only 101 species were evaluated using the species response index, because 32 species lacked data to analyze for a response. Scores from the trait association index were greater than the species response index. This is likely due to the species response index's inability to evaluate many rare species, which generally had high vulnerability scores for the trait association index. The indices were consistent in classifying vulnerability to habitat alteration, but varied in their classification of vulnerability due to increases in stream temperature and alterations to flow regimes, likely because extremes in current climate may not fully capture future conditions and their influence on stream fish communities. Both indices showed higher mean vulnerability scores for listed species than unlisted species, which provided a coarse measure of validation. Our indices classified species identified as being in need of conservation by the state of Missouri as highly vulnerable. The distribution of vulnerable species in Missouri showed consistent patterns between indices, with the more forest-dominated, groundwater fed streams in the Ozark subregion generally having higher numbers and proportions of vulnerable species per site than subregions that were agriculturally dominated with more overland flow. These results suggest that both indices will identify similar habitats as conservation action targets despite discrepancies in the classification of vulnerable species. Our vulnerability assessment provides a framework that can be refined and used in other regions.

Ecological Indicators↗