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USGS2011

A conduit dilation model of methane venting from lake sediments

Methane is a potent greenhouse gas, but its effects on Earth's climate remain poorly constrained, in part due to uncertainties in global methane fluxes to the atmosphere. An important source of atmospheric methane is the methane generated in organic-rich sediments underlying surface water bodies, including lakes, wetlands, and the ocean. The fraction of the methane that reaches the atmosphere depends critically on the mode and spatiotemporal characteristics of free-gas venting from the underlying sediments. Here we propose that methane transport in lake sediments is controlled by dynamic conduits, which dilate and release gas as the falling hydrostatic pressure reduces the effective stress below the tensile strength of the sediments. We test our model against a four-month record of hydrostatic load and methane flux in Upper Mystic Lake, Mass., USA, and show that it captures the complex episodicity of methane ebullition. Our quantitative conceptualization opens the door to integrated modeling of methane transport to constrain global methane release from lakes and other shallow-water, organic-rich sediment systems, and to assess its climate feedbacks.

Geophysical Research Letters↗
USGS2012

Impact of reduced near-field entrainment of overpressured volcanic jets on plume development

Volcanic plumes are often studied using one-dimensional analytical models, which use an empirical entrainment ratio to close the equations. Although this ratio is typically treated as constant, its value near the vent is significantly reduced due to flow development and overpressured conditions. To improve the accuracy of these models, a series of experiments was performed using particle image velocimetry, a high-accuracy, full-field velocity measurement technique. Experiments considered a high-speed jet with Reynolds numbers up to 467,000 and exit pressures up to 2.93 times atmospheric. Exit gas densities were also varied from 0.18 to 1.4 times that of air. The measured velocity was integrated to determine entrainment directly. For jets with exit pressures near atmospheric, entrainment was approximately 30% less than the fully developed level at 20 diameters from the exit. At pressures nearly three times that of the atmosphere, entrainment was 60% less. These results were introduced into Plumeria, a one-dimensional plume model, to examine the impact of reduced entrainment. The maximum column height was only slightly modified, but the critical radius for collapse was significantly reduced, decreasing by nearly a factor of two at moderate eruptive pressures.

Journal of Geophysical Research↗
USGS2012

Looking skyward to study ecosystem carbon dynamics

Between May and October 2011 the U.S. Geological Survey (USGS), in cooperation with the U.S. Department of Energy's Atmospheric Radiation Measurement (ARM) program, conducted a field campaign at the ARM Southern Great Plains site in north central Oklahoma to evaluate a new instrument for quantitative image-based monitoring of sky conditions and solar radiation. The High Dynamic Range All-Sky Imaging System (HDR-ASIS) was developed by USGS to support studies of cloud- and aerosol-induced variability in the geometric properties of solar radiation (the sky radiance distribution) and its effects on photosynthesis and uptake of carbon dioxide (CO 2 ) by terrestrial ecosystems. Under a clean, cloudless atmosphere when the Sun is above the horizon, most of the solar radiation reaching an area of the Earth's surface is concentrated in a beam coming directly from the Sun; a relatively small proportion arrives as diffuse radiation from the rest of the sky. Clouds and atmospheric aerosols cause increased scattering of the beam radiation, which increases the proportion of diffuse radiation at the surface.

Eos, Transactions, American Geophysical Union↗
USGS2018

Spatial distribution of halogen oxides in the plume of Mount Pagan volcano, Mariana Islands

Halogens are emitted from volcanoes primarily as hydrogen halides (HCl, HF, HBr, and HI). Upon mixing with the atmosphere, chlorine and bromine species are partially converted to the halogen oxides OClO and BrO. Here we report on the spatial distribution of BrO and OClO in the gas plume emitted from Mount Pagan volcano, Northern Mariana Islands. We found enhanced BrO/SO 2 ratios near the plume edges and a lack of OClO in the plume's core. Our results highlight the importance of in‐mixing of atmospheric oxidants for halogen oxide formation. They indicate that OClO can only be formed after most bromide dissolved in plume aerosols has been released to the gas phase. We conclude that Mount Pagan's gas emissions originated from a shallow magma body and were transported to the surface along dry degassing pathways and that the volcano's halogen emissions likely had significant impact on the oxidation capacity of the downwind atmosphere.

Geophysical Research Letters↗
USGS2020

Hydrologic export is a major component of coastal wetland carbon budgets

Coastal wetlands are among the most productive habitats on Earth and sequester globally significant amounts of atmospheric carbon (C). Extreme rates of soil C accumulation are widely assumed to reflect efficient C storage. Yet the fraction of wetland C lost via hydrologic export has not been directly quantified, since comprehensive budgets including direct estimates of lateral C loss are lacking. We present a complete net ecosystem C budget (NECB), demonstrating that lateral losses of C are a major component of the NECB for the largest stable brackish tidal marsh on the U.S. Pacific coast. Mean annual net ecosystem exchange of CO 2 with the atmosphere (NEE = −185 g C m 2 year −1 , negative NEE denoting ecosystem uptake) was compared to long-term soil C burial (87–110 g C m 2 year −1 ), suggesting only 47–59% of fixed atmospheric C accumulates in soils. Consistently, direct monitoring in 2017–2018 showed NEE of −255 g C m −2 year −1 , and hydrologic export of 105 g C m −2 year −1 (59% of NEE remaining on site). Despite their high C sequestration capacity, lateral losses from coastal wetlands are typically a larger fraction of the NECB when compared to other terrestrial ecosystems. Loss of inorganic C (the least measured NECB term) was 91% of hydrologic export and may be the most important term limiting C sequestration. The high productivity of coastal wetlands thus serves a dual function of C burial and estuarine export, and the multiple fates of fixed C must be considered when evaluating wetland capacity for C sequestration.

Global Biogeochemical Cycles↗
USGS2020

SPEAR: The next generation GFDL modeling system for seasonal to multidecadal prediction and projection

We document the development and simulation characteristics of the next generation modeling system for seasonal to decadal prediction and projection at the Geophysical Fluid Dynamics Laboratory (GFDL). SPEAR ( S eamless System for P rediction and EA rth System R esearch) is built from component models recently developed at GFDL—the AM4 atmosphere model, MOM6 ocean code, LM4 land model, and SIS2 sea ice model. The SPEAR models are specifically designed with attributes needed for a prediction model for seasonal to decadal time scales, including the ability to run large ensembles of simulations with available computational resources. For computational speed SPEAR uses a coarse ocean resolution of approximately 1.0° (with tropical refinement). SPEAR can use differing atmospheric horizontal resolutions ranging from 1° to 0.25°. The higher atmospheric resolution facilitates improved simulation of regional climate and extremes. SPEAR is built from the same components as the GFDL CM4 and ESM4 models but with design choices geared toward seasonal to multidecadal physical climate prediction and projection. We document simulation characteristics for the time mean climate, aspects of internal variability, and the response to both idealized and realistic radiative forcing change. We describe in greater detail one focus of the model development process that was motivated by the importance of the Southern Ocean to the global climate system. We present sensitivity tests that document the influence of the Antarctic surface heat budget on Southern Ocean ventilation and deep global ocean circulation. These findings were also useful in the development processes for the GFDL CM4 and ESM4 models.

Journal of Advances in Modeling Earth Systems↗
USGS2020

The GFDL Earth System Model Version 4.1 (GFDL-ESM 4.1): Overall coupled model description and simulation characteristics

We describe the baseline coupled model configuration and simulation characteristics of GFDL's Earth System Model Version 4.1 (ESM4.1), which builds on component and coupled model developments at GFDL over 2013–2018 for coupled carbon-chemistry-climate simulation contributing to the sixth phase of the Coupled Model Intercomparison Project. In contrast with GFDL's CM4.0 development effort that focuses on ocean resolution for physical climate, ESM4.1 focuses on comprehensiveness of Earth system interactions. ESM4.1 features doubled horizontal resolution of both atmosphere (2° to 1°) and ocean (1° to 0.5°) relative to GFDL's previous-generation coupled ESM2-carbon and CM3-chemistry models. ESM4.1 brings together key representational advances in CM4.0 dynamics and physics along with those in aerosols and their precursor emissions, land ecosystem vegetation and canopy competition, and multiday fire; ocean ecological and biogeochemical interactions, comprehensive land-atmosphere-ocean cycling of CO 2 , dust and iron, and interactive ocean-atmosphere nitrogen cycling are described in detail across this volume of JAMES and presented here in terms of the overall coupling and resulting fidelity. ESM4.1 provides much improved fidelity in CO 2 and chemistry over ESM2 and CM3, captures most of CM4.0's baseline simulations characteristics, and notably improves on CM4.0 in (1) Southern Ocean mode and intermediate water ventilation, (2) Southern Ocean aerosols, and (3) reduced spurious ocean heat uptake. ESM4.1 has reduced transient and equilibrium climate sensitivity compared to CM4.0. Fidelity concerns include (1) moderate degradation in sea surface temperature biases, (2) degradation in aerosols in some regions, and (3) strong centennial scale climate modulation by Southern Ocean convection.

Journal of Advances in Modeling Earth Systems (JAM↗
USGS2022

New craters on Mars: An updated catalog

We present a catalog of new impacts on Mars. These craters formed in the last few decades, constrained with repeat orbital imaging. Crater diameters range from 58 m down to <1 m. For each impact, we report whether it formed a single crater or a cluster (58% clusters); albedo features of the blast zone (88% halos; 64% linear rays; 10% arcuate rays; majority dark-toned; 4% light-toned; 14% dual-toned); and exposures of ice (4% definite; 2% possible). We find no trends in the occurrences of clusters with latitude, elevation, or impact size. Albedo features do not depend on atmospheric fragmentation. Halos are more prevalent at lower elevations, indicating an atmospheric pressure dependence; and around smaller impacts, which could be an observational bias. Linear rays are more likely to form from larger impacts into more consolidated material and may be enhanced by lower atmospheric pressure at higher elevations. Light- and dual-toned blast zones occur in specific regions and more commonly around larger impacts, indicating excavation of compositionally distinct material. Surfaces covered with bright dust lacking cohesion are favored to form detectable surface features. The slope of the cumulative size frequency distribution for this data set is 2.2 for diameters >8 m (differential slope 2.9), significantly shallower than the slope of new lunar craters. We believe that no systematic biases exist in the Martian data set sufficient to explain the discrepancy. This catalog is complete at the time of writing, although observational biases exist, and new discoveries continue.

Journal of Geophysical Research E: Planets↗
USGS2024

Controls on stable methane isotope signatures in northern peatlands and potential shifts in signatures under permafrost thaw scenarios

Northern peatlands are a globally significant source of methane (CH 4 ), and emissions are projected to increase due to warming and permafrost loss. Understanding the microbial mechanisms behind patterns in CH 4 production in these systems will be key to predicting annual emissions changes, with stable carbon isotopes (δ 13 C-CH 4 ) being a powerful tool for characterizing these drivers. Given that δ 13 C signatures of CH 4 are used in top-down atmospheric inversion models to partition sources, our ability to model CH 4 production pathways and associated δ 13 C-CH 4 signatures in peatland types impacted by a changing climate is critical. We sought to characterize the role of environmental conditions, including both hydrologic and vegetation patterns associated with permafrost thaw, on δ 13 C-CH 4 signatures from a diverse set of high-latitude peatlands. We measured porewater and emitted CH 4 stable isotopes, pH, and vegetation composition from five boreal-Arctic peatlands. Porewater δ 13 C-CH 4 was strongly associated with peatland type, with δ 13 C enriched values obtained from more minerotrophic fens (-61.2 ± 9.1‰) compared to permafrost-free bogs (-74.1 ± 9.4‰) and raised permafrost bogs (-81.6 ± 11.5‰). Variation in porewater δ 13 C-CH 4 was best explained by sedge cover, CH 4 concentration, and the interactive effect of peatland type and pH ( r 2 = 0.50, p < 0.001). Emitted δ 13 C-CH 4 varied greatly but was positively correlated with porewater δ 13 C-CH 4 , suggesting that porewater data can be used to predict changing emissions signatures from these systems. We calculated a weighted mean mixed atmospheric CH 4 signature for northern peatlands of -65.3 ± 7‰ and show that this signature is more sensitive to landscape drying (4 to 10 % depletion in δ 13 C) than wetting (1.5 to 5% enrichment in δ 13 C) under permafrost thaw scenarios. Our results suggest northern peatland δ 13 C-CH 4 signatures are likely to shift in the future which has important implications for source partitioning in atmospheric inversion models.

Journal of Geophysical Research: Biogeosciences↗
USGS2026

Mercury cycling across a U.S. semi-arid mountain ecosystem elevation gradient

Mountains comprise ∼30% of the Earth's surface, but mercury (Hg) cycling in these regions remains understudied, particularly in the semi-arid western U.S. where strong climatic and ecological gradients in mountainous landscapes influence Hg deposition, retention, and bioaccumulation. In this study, we quantified growing season inputs, storage, and bioaccumulation of Hg along a ∼2,000 m elevation gradient in the Colorado Rocky Mountains, spanning the plains to the alpine. We measured Hg in atmospheric deposition, vegetation, soil, and 12-day-old chickadees. Accounting for percent canopy cover, open precipitation was the largest component of atmospheric deposition at all elevations, followed by throughfall and litterfall fluxes. Atmospheric Hg fluxes peaked at mid-elevations, likely due to cloud-cap dynamics and denser canopy cover. Total gaseous Hg and precipitation fluxes were highest at low elevations, likely reflecting local emissions and meteorological pooling. Surface soil Hg storage was more strongly predicted by organic matter content ( R 2 = 0.49; p < 0.01) and water retention ( R 2 = 0.45; p < 0.01) than by elevation ( R 2 = 0.21; p < 0.05). Alpine soils (66.3 ± 25.3 ng g −1 ) had significantly higher total Hg concentrations than lower elevations (<41.0 ± 12.7 ng g −1 ; p < 0.01), likely reflecting slower organic matter turnover. Soils on north-facing slopes also retained significantly higher pools of Hg in surface soils compared with south- and east-facing slopes. Vegetation Hg pools were greatest in the alpine region, likely due to long-lived plant species. Methylmercury (MeHg) concentrations in chickadee feathers peaked at mid-elevations (205 ± 155 ng g −1 ), corresponding to higher ecosystem Hg inputs via throughfall. Our results show that deposition, canopy cover, and meteorological conditions—not elevation alone—predict Hg retention and bioaccumulation.

Colorado↗
USGS2012

Is the extent of glaciation limited by marine gas-hydrates?

Methane may have been released to the atmosphere during the Quaternary from Arctic shelf gas-hydrates as a result of thermal decomposition caused by climatic warming and rising sea-level; this release of methane (a greenhouse gas) may represent a positive feedback on global warming [Revelle, 1983; Kvenvolden, 1988a; Nisbet, 1990]. We consider the response to sea-level changes by the immense amount of gas-hydrate that exists in continental rise sediments, and suggest that the reverse situation may apply&mdash;that release of methane trapped in the deep-sea sediments as gas-hydrates may provide a negative feedback to advancing glaciation. Methane is likely to be released from deep-sea gas-hydrates as sea-level falls because methane gas-hydrates decompose with pressure decrease. Methane would be released to sediment pore space at shallow sub-bottom depths (100's of meters beneath the seafloor, commonly at water depths of 500 to 4,000 m) producing zones of markedly decreased sediment strength, leading to slumping [Carpenter, 1981; Kayen, 1988] and abrupt release of the gas. Methane is likely to be released to the atmosphere in spikes that become larger and more frequent as glaciation progresses. Because addition of methane to the atmosphere warms the planet, this process provides a negative feedback to glaciation, and could trigger deglaciation.

Geophysical Research Letters↗
USGS1996

A scan-angle correction for thermal infrared multispectral data using side lapping images

Thermal infrared multispectral scanner (TIMS) images, acquired with side lapping flight lines, provide dual angle observations of the same area on the ground and can thus be used to estimate variations in the atmospheric transmission with scan angle. The method was tested using TIMS aircraft data for six flight lines with about 30% sidelap for an area within Joshua Tree National Park, California. Generally the results correspond to predictions for the transmission scan-angle coefficient based on a standard atmospheric model although some differences were observed at the longer wavelength channels. A change was detected for the last pair of lines that may indicate either spatial or temporal atmospheric variation. The results demonstrate that the method provides information for correcting regional survey data (requiring multiple adjacent flight lines) that can be important in detecting subtle changes in lithology.

Geophysical Research Letters↗
USGS1984

Stable isotope compositions of gases and vegetation near naturally burning coal

Our measurements of stable isotope compositions of CO2 issuing from vents produced by naturally burning coal indicate that the coal is oxidized through a kinetic process in which groundwater is the oxidizing agent. The CO2 produced by the oxidation of the coal is extremely depleted in 13C relative to normal atmospheric CO2. The change in the ??13C value of atmospheric CO2 near the vents resulting from the burning coal was not recorded in tree rings from red cedars, but the ??13C values of some C3 and C4 type plants collected from within the area were greatly affected. Our results indicate that the ??13C values of some species of plants may be sensitive indicators of changes in the carbon isotopic composition of atmospheric CO2. ?? 1984 Nature Publishing Group.

Nature↗
USGS1984

Stylites, a vascular land plant without stomata absorbs CO2 via its roots

Photosynthetic organs of most higher plants normally have access to atmospheric CO 2 through stomatal pores which also serve as variable valves to control the loss of H 2 O vapour which accompanies CO 2 uptake 1 . The acquisition of stomata is commonly thought to have been a crucial development permitting ‘conquest’ of land and direct access of plants to atmospheric CO 2 . Only in desert stem succulents during drought do stomata remain so tightly closed in the light that the photosynthetic tissues are dependent on internal CO 2 generated through the photosynthetic pathway known as crassulacean acid metabolism 2 . Functional stomata are absent in submerged aquatic plants and in non-vascular land plants (for example, mosses) which are normally covered by a water film. Although it is now clearly established that some aquatic plants assimilate large amounts of CO 2 from the sediment via roots 3–5 , terrestrial plants are thought to assimilate only insignificant amounts of CO 2 via this path 6 . Here we report on a terrestrial plant, Stylites andicola , which lacks stomata and is unable to exchange gas with the aerial atmosphere. Rather, it derives nearly all of its photosynthetic carbon through its roots. In addition, this species possesses characteristics of crassulacean acid metabolism.

Nature↗
USGS2000

Simulated influences of Lake Agassiz on the climate of central North America 11,000 years ago

Eleven thousand years ago, large lakes existed in central and eastern North America along the margin of the Laurentide Ice Sheet. The large-scale North American climate at this time has been simulated with atmospheric general circulation models, but these relatively coarse global models do not resolve potentially important features of the mesoscale circulation that arise from interactions among the atmosphere, ice sheet, and proglacial lakes. Here we present simulations of the climate of central and eastern North America 11,000 years ago with a high-resolution, regional climate model nested within a general circulation model. The simulated climate is in general agreement with that inferred from palaeoecological evidence. Our experiments indicate that through mesoscale atmospheric feedbacks, the annual delivery of moisture to the Laurentide Ice Sheet was diminished at times of a large, cold Lake Agassiz relative to periods of lower lake stands. The resulting changes in the mass balance of the ice sheet may have contributed to fluctuations of the ice margin, thus affecting the routing of fresh water to the North Atlantic Ocean. A retreating ice margin during periods of high lake level may have opened an outlet for discharge of Lake Agassiz into the North Atlantic. A subsequent advance of the ice margin due to greater moisture delivery associated with a low lake level could have dammed the outlet, thereby reducing discharge to the North Atlantic. These variations may have been decisive in causing the Younger Dryas cold even.

Nature↗
USGS1992

Importance of methane-oxidizing bacteria in the methane budget as revealed by the use of a specific inhibitor

METHANE is a greenhouse gas whose concentration in the atmosphere is increasing . Much of this methane is derived from the metabolism of methane-generating (methanogenic) bacteria and over the past two decades much has been learned about the ecology of methanogens; specific inhibitors of methanogenesis, such as 2-bromoethanesulphonic acid, have proved useful in this regard . In contrast, although much is known about the biochemistry of methane-oxidizing (methanotrophic) bacteria , ecological investigations have been hampered by the lack of an analogous specific inhibitor . Methanotrophs limit the flux of methane to the atmosphere from sediments and consume atmospheric methane , but the quantitative importance of methanotrophy in the global methane budget is not well known . Methylfluoride (CH 3 F) is known to inhibit oxygen consumption by Methylococcus capsu-latus , and to inhibit the oxidation of 14 CH 4 to 14 CO 2 by endosymbionts in mussel gill tissues . Here we report that methylfluoride (MF) inhibits the oxidation of methane by methane monooxy-genase, and by using methylfluoride in field investigations, we find that methanotrophic bacteria can consume more than 90% of the methane potentially available.

Nature↗
USGS2007

Decreased abundance of crustose coralline algae due to ocean acidification

Owing to anthropogenic emissions, atmospheric concentrations of carbon dioxide could almost double between 2006 and 2100 according to business-as-usual carbon dioxide emission scenarios 1 . Because the ocean absorbs carbon dioxide from the atmosphere 2, 3, 4 , increasing atmospheric carbon dioxide concentrations will lead to increasing dissolved inorganic carbon and carbon dioxide in surface ocean waters, and hence acidification and lower carbonate saturation states 2, 5 . As a consequence, it has been suggested that marine calcifying organisms, for example corals, coralline algae, molluscs and foraminifera, will have difficulties producing their skeletons and shells at current rates 6, 7 , with potentially severe implications for marine ecosystems, including coral reefs 6, 8, 9, 10, 11 . Here we report a seven-week experiment exploring the effects of ocean acidification on crustose coralline algae, a cosmopolitan group of calcifying algae that is ecologically important in most shallow-water habitats 12, 13, 14 . Six outdoor mesocosms were continuously supplied with sea water from the adjacent reef and manipulated to simulate conditions of either ambient or elevated seawater carbon dioxide concentrations. The recruitment rate and growth of crustose coralline algae were severely inhibited in the elevated carbon dioxide mesocosms. Our findings suggest that ocean acidification due to human activities could cause significant change to benthic community structure in shallow-warm-water carbonate ecosystems.

Nature Geoscience↗
USGS2010

Methane hydrate-bearing seeps as a source of aged dissolved organic carbon to the oceans

Marine sediments contain about 500–10,000 Gt of methane carbon1, 2, 3, primarily in gas hydrate. This reservoir is comparable in size to the amount of organic carbon in land biota, terrestrial soils, the atmosphere and sea water combined1, 4, but it releases relatively little methane to the ocean and atmosphere5. Sedimentary microbes convert most of the dissolved methane to carbon dioxide6, 7. Here we show that a significant additional product associated with microbial methane consumption is methane-derived dissolved organic carbon. We use Δ14C and δ13C measurements and isotopic mass-balance calculations to evaluate the contribution of methane-derived carbon to seawater dissolved organic carbon overlying gas hydrate-bearing seeps in the northeastern Pacific Ocean. We show that carbon derived from fossil methane accounts for up to 28% of the dissolved organic carbon. This methane-derived material is much older, and more depleted in 13C, than background dissolved organic carbon. We suggest that fossil methane-derived carbon may contribute significantly to the estimated 4,000–6,000 year age of dissolved organic carbon in the deep ocean8, and provide reduced organic matter and energy to deep-ocean microbial communities.

Nature Geoscience↗