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Water Quality, Physical Habitat, and Biology of the Kijik River Basin, Lake Clark National Park and Preserve, Alaska, 2004-2005

The U.S. Geological Survey and the National Park Service conducted a water-quality investigation of the Kijik River Basin in Lake Clark National Park and Preserve from June 2004 to March 2005. The Kijik River Basin was studied because it has a productive sockeye salmon run that is important to the larger Kvichak River watershed. Water-quality, physical habitat, and biological characteristics were assessed. Water type throughout the Kijik River Basin is calcium bicarbonate although Little Kijik River above Kijik Lake does have slightly higher concentrations of sulfate and chloride. Alkalinity concentrations are generally less than 28 milligrams per liter, indicating a low buffering capacity of these waters. Lachbuna Lake traps much of the suspended sediment from the glacier streams in the headwaters of the basin as evidenced by low secchi-disc transparency of 1 to 2 meters and low suspended sediment concentrations in the Kijik River downstream from the lake. Kijik Lake is a fed by clearwater streams and has secchi-disc readings ranging from 11 to 15 meters. Streambed sediments collected from four surface sites analyzed for trace elements indicated that arsenic concentrations at all sites were above proposed guidelines. However, arsenic concentrations are due to the local geology, not anthropogenic factors. Benthic macroinvertebrate qualitative multi-habitat samples collected from two sites on the Little Kijik River and two sites on the main stem of the Kijik River indicated a total of 69 taxa present among the four sites. The class Insecta, made up the largest percentage of macroinvertebrates, totaling 70 percent of the families found. The insects were comprised of four orders; Diptera (flies and midges), Ephemeroptera (mayflies), Plecoptera (stoneflies), and Trichoptera (caddisflies). One-hundred twenty-two species of periphytic algae were identified in qualitative multi-habitat samples collected at the four stream sites. Eight species of non-motile, diatoms were collected from all four stream sites suggesting that the areas from which they were collected are relatively stable and unaffected by sedimentation.

Scientific Investigations Report↗

The surface elevation table and marker horizon technique: A protocol for monitoring wetland elevation dynamics

The National Park Service, in response to the growing evidence and awareness of the effects of climate change on federal lands, determined that monitoring wetland elevation change is a top priority in North Atlantic Coastal parks (Stevens et al, 2010). As a result, the NPS Northeast Coastal and Barrier Network (NCBN) in collaboration with colleagues from the U.S. Geological Survey (USGS) and The National Oceanic and Atmospheric Administration (NOAA) have developed a protocol for monitoring wetland elevation change and other processes important for determining the viability of wetland communities. Although focused on North Atlantic Coastal parks, this document is applicable to all coastal and inland wetland regions. Wetlands exist within a narrow range of elevation which is influenced by local hydrologic conditions. For coastal wetlands in particular, local hydrologic conditions may be changing as sea levels continue to rise. As sea level rises, coastal wetland systems may respond by building elevation to maintain favorable hydrologic conditions for their survival. This protocol provides the reader with instructions and guidelines on designing a monitoring plan or study to: A) Quantify elevation change in wetlands with the Surface Elevation Table (SET). B) Understand the processes that influence elevation change, including vertical accretion (SET and Marker Horizon methods). C) Survey the wetland surface and SET mark to a common reference datum to allow for comparing sample stations to each other and to local tidal datums. D) Survey the SET mark to monitor its relative stability. This document is divided into two parts; the main body that presents an overview of all aspects of monitoring wetland elevation dynamics, and a collection of Standard Operating Procedures (SOP) that describes in detail how to perform or execute each step of the methodology. Detailed instruction on the installation, data collection, data management and analysis are provided in this report and associated SOP’s. A better understanding of these processes will help to determine the present and future viability of coastal wetlands managed by NPS and can help address measures that will ensure these communities exist into the future.

Natural Resource Report↗

Geology, Geochemistry and Geophysics of Sedimentary Rock-Hosted Au Deposits in P.R. China

This is the second report concerning results of a joint project between the U.S. Geological Survey and the Tianjin Geological Academy to study sedimentary rock-hosted Au deposits in P.R. China. Since the 1980s, Chinese geologists have devoted a large-scale exploration and research effort to the deposits. As a result, there are more than 20 million oz of proven Au reserves in sedimentary rock-hosted Au deposits in P.R. China. Additional estimated and inferred resources are present in over 160 deposits and occurrences, which are undergoing exploration. This makes China second to Nevada in contained ounces of Au in Carlin-type deposits. It is likely that many of the Carlin-type Au ore districts in China, when fully developed, could have resource potential comparable to the multi-1,000-tonne Au resource in northern Nevada. The six chapters of this report describe sedimentary rock-hosted Au deposits that were visited during the project. Chapters 1 and 2 provide an overview of sedimentary rock-hosted Au deposits and Carlin-type Au deposits and also provide a working classification for the sedimentary rock-hosted Au deposits. Chapters 3, 4, and 5 provide descriptions that were compiled from the literature in China in three main areas: the Dian-Qian-Gui, the Qinling fold belt, and Middle-Lower Yangtze River areas. Chapter 6 contains a weights-of-evidence (WofE), GIS-based mineral assessment of sedimentary rock-hosted Au deposits in the Qinling fold belt and Dian-Qian-Gui areas. Appendices contain scanned aeromagnetic (Appendix I) and gravity (Appendix II) geophysical maps of south and central China. Data tables of the deposits (Appendix III) also are available in the first report as an interactive database at http://geopubs.wr.usgs.gov/open-file/of98-466/. Geochemical analysis of ore samples from the deposits visited are contained in Appendix IV.

Open-File Report↗

Effects of 2010 Hurricane Earl amidst geologic evidence for greater overwash at Anegada, British Virgin Islands

A post-hurricane survey of a Caribbean island affords comparisons with geologic evidence for greater overwash at the same place. This comparison, though of limited application to other places, helps calibrate coastal geology for assessment of earthquake and tsunami potential along the Antilles Subduction Zone. The surveyed island, Anegada, is 120 km south of the Puerto Rico Trench and is near the paths of hurricanes Donna (1960) and Earl (2010), which were at or near category 4 when at closest approach. The survey focused on Earl's geologic effects, related them to the surge from Hurricane Donna, and compared them further with erosional and depositional signs of southward overwash from the Atlantic Ocean that dates to 1200–1450 AD and to 1650–1800 AD. The main finding is that the geologic effects of these earlier events dwarf those of the recent hurricanes. Hurricane Earl's geologic effects at Anegada, observed mainly in 2011, were limited to wrack deposition along many of the island's shores and salt ponds, accretion of small washover (spillover) fans on the south shore, and the suspension and deposition of microbial material from interior salt ponds. Earl's most widespread deposit at Anegada, the microbial detritus, was abundantly juxtaposed with evidence for catastrophic overwash in prior centuries. The microbial detritus formed an extensive coating up to 2 cm thick that extended into breaches in beach-ridge plains of the island's north shore, onto playas that are underlain by a sand-and-shell sheet that extends as much as 1.5 km southward from the north shore, and among southward-strewn limestone boulders pendant to outcrops as much as 1 km inland. Earl's spillover fans also contrast with a sand-and-shell sheet, which was dated previously to 1650–1800, by being limited to the island's south shore and by extending inland a few tens of meters at most. These findings complement those reported in this issue by Michaela Spiske and Robert Halley (Spiske and Halley, 2014), who studied a coral-rubble ridge that lines part of Anegada's north shore. Spiske and Halley attribute the ridge to storms that were larger than Earl. But they contrast the ridge with coral boulders that were scattered hundreds of meters inland by overwash in 1200–1450.

Anegada↗

Gold deposits and occurrences of the Greater Caucasus, Georgia Republic: Their genesis and prospecting criteria

The south-central part of the Greater Caucasus region, Georgia Republic, represents an extremely prospective region for significant orogenic gold deposits. Gold-bearing quartz veins are concentrated in two extensive WNW-trending belts, the Mestia-Racha and Svaneti districts, within the northern margin of the Southern Slope Zone of the Great Caucasus orogen. This metalliferous region is dominated by Early to Middle Jurassic slates, which are part of a terrane that likely accreted to the continental margin from late Paleozoic to Jurassic. The slates were subsequently intruded by both Middle to Late Jurassic and Neogene granitoids. Quartz veins in the more carbonaceous slate units are most consistently enriched in As, Au, Hg, Sb, and W, and show mineralization styles most consistent with typical orogenic gold deposits. Quartz veins in the Mestia-Racha district were mined in Soviet times for As, Sb, and W, but many of these are now being recognized as gold resource targets. The veins occur in the footwall of a thrust fault between the Southern Slope zone and an earlier accreted terrane, the Main Zone, to the north. Many veins in the district continue along strike for > 1??km and some cut Neogene intrusions, constraining ore formation to the most recent 4 to 5??million years. Gold deposition thus correlates with final collision of the Arabian plate to the south and uplift of the ore-hosting Greater Caucasus. The Zopkhito deposit, previously mined for antimony, contains an estimated 55??t Au at a cutoff grade of 0.5??g/t. The veins are localized in an area where smaller-order structures show a major change in strike from N-S to more E-W trends. A pyrite-arsenopyrite ore stage includes gold concentrated in both sulfide phases; it is overprinted by a later stibnite-dominant stage. Fluid-inclusion studies of ore samples from the Zopkhito deposit indicate minimum trapping temperatures of 300 to 350????C and 200 to 300????C for the two stages, respectively, and minimum trapping pressures of 0.2 to 0.5??kbar. Ore-forming fluids, with approximately 5 to 20??mol% non-aqueous gas, evolved from N2-dominant to CO2-dominant during evolution of the hydrothermal system. ??34S values of + 1 to + 4??? for ore-related sulfides at Zopkhito are consistent with a sedimentary rock source for the sulfur, and ??18O quartz measurements of 16 to 21??? are consistent with either a magmatic or metamorphic fluid. More than 60 gold-bearing lodes and placers in the Svaneti district occur along the thrust between the Southern Slope and Main Zones. Lode gold potential was first recognized in the historic placer district in the 1980s, with many auriferous quartz veins cutting Middle Jurassic igneous rocks. Brecciated veins in the 18??t Au Lukhra deposit cut a small granodioritic to dioritic stock; the latter intrudes Devonian schist immediately north of the thrust. Presently, there are three recognized ore zones in the deposit, with the most significant occurring over an area 140??m in length and 12??m-wide, with typical grades of 7 to 9??g/t Au. Reconnaissance fluid-inclusion studies of ore samples from the Lukhra deposit indicate minimum trapping temperatures of 220????C. Measurements of ??18Oquartz of about 10??? suggest buffering of isotopic composition by the igneous host rocks.

Ore Geology Reviews↗

Pesticide concentrations of surface water and suspended sediment in Yolo By-Pass and Cache Slough Complex, California, 2019–2021

Managed flow pulses in the north Sacramento-San Joaquin Delta are an adaptive management tool used in efforts to enhance food availability in delta smelt ( Hypomesus transpacificus ) habitat as part of the North Delta Food Subsidies Action. The California Department of Water Resources (DWR) monitors non-managed seasonal and local flow pulses and managed flow pulses from agricultural drainage or main stem Sacramento River water redirected through Yolo By-Pass. Augmented flow pulses are hypothesized to improve net positive flow during summer and fall in Yolo By-Pass and enhance plankton availability in delta smelt habitat in Cache Slough complex. However, flow pulses may also result in unintended negative effects of increased pesticides that are transported through Yolo By-Pass. Here, we evaluate pesticides in surface water and suspended sediment correlated with flow pulses in Yolo By-Pass during the 2019–21 calendar years. Surface-water and suspended-sediment samples were collected by DWR personnel. Water samples were analyzed at the U.S. Geological Survey Organic Chemistry Research Laboratory in Sacramento, California, for a suite of as many as 178 current-use pesticides and pesticide degradates using gas chromatography with mass spectrometry (GC/MS), gas chromatography with tandem mass spectrometry, and liquid chromatography with tandem mass spectrometry. Suspended sediments filtered from water samples were analyzed for a suite of as many as 173 current-use pesticides and pesticide degradates. There were 52 different current-use pesticides and pesticide degradates detected in water samples collected throughout the study. Concentrations ranged from below method detection limits to 4,070 nanograms per liter. Five different compounds in water samples were detected with concentrations above U.S. Environmental Protection Agency aquatic life benchmarks. In suspended-sediment samples collected throughout the study, eight different current-use pesticides and pesticide degradates were detected. Total pesticide concentrations were highest at surface-water sites in the northern end of Yolo By-Pass and decreased farther downstream during the same sampling events. Total pesticide concentrations generally were higher for most surface-water sites immediately before or during the managed flow pulse in 2019 versus after the flow pulse. Finally, mean total pesticide concentrations for each surface-water site generally were higher during all of 2019 than 2021, regardless of sampling period.

California↗

Areal distribution and concentration of contaminants of concern in surficial streambed and lakebed sediments, Lake St. Clair and tributaries, Michigan, 1990-2003

As part of the Lake St. Clair Regional Monitoring Project, the U.S. Geological Survey evaluated data collected from surficial streambed and lakebed sediments in the Lake Erie-Lake St. Clair drainages. This study incorporates data collected from 1990 through 2003 and focuses primarily on the U.S. part of the Lake St. Clair Basin, including Lake St. Clair, the St. Clair River, and tributaries to Lake St. Clair. Comparable data from the Canadian part of the study area are included where available. The data are compiled into 4 chemical classes and consist of 21 compounds. The data are compared to effects-based sediment-quality guidelines, where the Threshold Effect Level and Lowest Effect Level represent concentrations below which adverse effects on biota are not expected and the Probable Effect Level and Severe Effect Level represent concentrations above which adverse effects on biota are expected to be frequent. Maps in the report show the spatial distribution of the sampling locations and illustrate the concentrations relative to the selected sediment-quality guidelines. These maps indicate that sediment samples from certain areas routinely had contaminant concentrations greater than the Threshold Effect Concentration or Lowest Effect Level. These locations are the upper reach of the St. Clair River, the main stem and mouth of the Clinton River, Big Beaver Creek, Red Run, and Paint Creek. Maps also indicated areas that routinely contained sediment contaminant concentrations that were greater than the Probable Effect Concentration or Severe Effect Level. These locations include the upper reach of the St. Clair River, the main stem and mouth of the Clinton River, Red Run, within direct tributaries along Lake St. Clair and in marinas within the lake, and within the Clinton River headwaters in Oakland County. Although most samples collected within Lake St. Clair were from sites adjacent to the mouths of its tributaries, samples analyzed for trace-element concentrations were collected throughout the lake. The distribution of trace-element concentrations corresponded well with the results of a two-dimensional hydrodynamic model of flow patterns from the Clinton River into Lake St. Clair. The model was developed independent from the bed sediment analysis described in this report; yet it showed a zone of deposition for outflow from the Clinton River into Lake St. Clair that corresponded well with the spatial distribution of trace-element concentrations. This zone runs along the western shoreline of Lake St. Clair from L'Anse Creuse Bay to St. Clair Shores, Michigan and is reflected in the samples analyzed for mercury and cadmium. Statistical summaries of the concentration data are presented for most contaminants, and selected statistics are compared to effects-based sediment-quality guidelines. Summaries were not computed for dieldrin, chlordane, hexachlorocyclohexane, lindane, and mirex because insufficient data are available for these contaminants. A statistical comparison showed that the median concentration for hexachlorobenzene, anthracene, benz[ a ]anthracene, chrysene, and pyrene are greater than the Threshold Effect Concentration or Lowest Effect Level. Probable Effect Concentration Quotients provide a mechanism for comparing the concentrations of contaminant mixtures against effects-based biota data. Probable Effect Concentration Quotients were calculated for individual samples and compared to effects-based toxicity ranges. The toxicity-range categories used in this study were nontoxic (quotients < 0.5) and toxic (quotients > 0.5). Of the 546 individual samples for which Probable Effect Concentration Quotients were calculated, 469 (86 percent) were categorized as being nontoxic and 77 (14 percent) were categorized as being toxic. Bed-sediment samples with toxic Probable Effect Concentration Quotients were collected from Paint Creek, Galloway Creek, the main stem of the Clinton River, Big Beaver Creek, Red Run, Clinton River towards the mouth, Lake St. Clair along the western shore, and the St. Clair River near Sarnia.

Michigan↗

Simulation of daily streamflows at gaged and ungaged locations within the Cedar River Basin, Iowa, using a Precipitation-Runoff Modeling System model

The U.S. Geological Survey, in cooperation with the Iowa Department of Natural Resources, conducted a study to examine techniques for estimation of daily streamflows using hydrological models and statistical methods. This report focuses on the use of a hydrologic model, the U.S. Geological Survey's Precipitation-Runoff Modeling System, to estimate daily streamflows at gaged and ungaged locations. The Precipitation-Runoff Modeling System is a modular, physically based, distributed-parameter modeling system developed to evaluate the impacts of various combinations of precipitation, climate, and land use on surface-water runoff and general basin hydrology. The Cedar River Basin was selected to construct a Precipitation-Runoff Modeling System model that simulates the period from January 1, 2000, to December 31, 2010. The calibration period was from January 1, 2000, to December 31, 2004, and the validation periods were from January 1, 2005, to December 31, 2010 and January 1, 2000 to December 31, 2010. A Geographic Information System tool was used to delineate the Cedar River Basin and subbasins for the Precipitation-Runoff Modeling System model and to derive parameters based on the physical geographical features. Calibration of the Precipitation-Runoff Modeling System model was completed using a U.S. Geological Survey calibration software tool. The main objective of the calibration was to match the daily streamflow simulated by the Precipitation-Runoff Modeling System model with streamflow measured at U.S. Geological Survey streamflow gages. The Cedar River Basin daily streamflow model performed with a Nash-Sutcliffe efficiency ranged from 0.82 to 0.33 during the calibration period, and a Nash-Sutcliffe efficiency ranged from 0.77 to -0.04 during the validation period. The Cedar River Basin model is meeting the criteria of greater than 0.50 Nash-Sutcliffe and is a good fit for streamflow conditions for the calibration period at all but one location, Austin, Minnesota. The Precipitation-Runoff Modeling System model accurately simulated streamflow at four of six uncalibrated sites within the basin. Overall, there was good agreement between simulated and measured seasonal and annual volumes throughout the basin for calibration and validation sites. The calibration period ranged from 0.2 to 20.8 percent difference, and the validation period ranged from 0.0 to 19.5 percent difference across all seasons and total annual runoff. The Precipitation-Runoff Modeling System model tended to underestimate lower streamflows compared to the observed streamflow values. This is an indication that the Precipitation-Runoff Modeling model needs more detailed groundwater and storage information to properly model the low-flow conditions in the Cedar River Basin.

Iowa↗

Sediment loads and transport at constructed chutes along the Missouri River - Upper Hamburg Chute near Nebraska City, Nebraska, and Kansas Chute near Peru, Nebraska

The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, monitored suspended sediment within constructed Missouri River chutes during March through October 2012. Chutes were constructed at selected river bends by the U.S. Army Corps of Engineers to help mitigate aquatic habitat lost through the creation and maintenance of the navigation channel on the Missouri River. The restoration and development of chutes is one method for creating shallow-water habitat within the Missouri River to meet requirements established by the amended 2000 Biological Opinion. Understanding geomorphic channel-evolution processes and sediment transport is important for the design of chutes, monitoring and maintenance of existing chutes, and characterizing the habitat that the chutes provide. This report describes the methods used to monitor suspended sediment at two Missouri River chutes and presents the results of the data analysis to help understand the suspended-sediment characteristics of each chute and the effect the chutes have on the Missouri River. Upper Hamburg chute, near Nebraska City, Nebraska, and Kansas chute, near Peru, Nebraska, were selected for monitoring. At each study site, monthly discrete samples were collected from April through October in the Missouri River main-channel transects upstream from the chute inlet, downstream from the chute outlet, at the outlet (downstream transect) of both chutes, and at the inlet (upstream transect) of Kansas chute. In addition, grab samples from all chute sampling locations were collected using autosamplers. Suspended-sediment concentration (SSC) and grain-size metrics were determined for all samples (discrete and grab). Continuous water-quality monitors recorded turbidity and water temperature at 15-minute intervals at the three chute sampling locations. Two acoustic Doppler velocimeters, one within each chute, measured water depth and current velocities continuously. The depth and velocity data were used to estimate streamflow within each chute. The sampling design was developed to understand the suspended-sediment differences within each chute and between the chute and the Missouri River main channel during discrete sampling. The sampling design also allowed for site-specific surrogate relations between SSC and turbidity to be developed, which could be used to compute real-time estimates of SSC and sediment loads within the chutes. Real-time estimates of SSC and sediment loads enable a better understanding of sediment transport within the chutes during times when physical samples are not collected, including periods of high flow. High flows during the summer of 2011 resulted in substantial alterations to both studied chutes; therefore, the U.S. Army Corps of Engineers repaired and modified both chutes during 2012. These unforeseen repairs and modifications within the chutes added uncertainty to the analysis because concentrations were altered by construction equipment and flow alteration. Daily suspended-sediment and suspended-silt loads were estimated based on surrogate relations with turbidity. A linear regression was used to estimate equal-width increment (EWI)-equivalent SSC from autosampler SSC before using the model-calibration dataset to determine the best-fit model for prediction of SSC from the turbidity and, in some cases, discharge. Correlation between suspended-sand concentration ( SSandC ) in EWI samples and concurrent samples collected by an autosampler was low; therefore, SSandC was excluded from development of surrogate relations because a large part of the calibration dataset was from autosamples. Instead, SSandC was estimated as SSC minus suspended-silt-clay concentration ( SSiltC ). At all sites, the best-fit models included the base-10 logarithm of concentration and turbidity, and at Kansas chute upstream, the base-10 logarithm of streamflow was also included in the best-fit models. These surrogate models were used to estimate continuous time series of SSC and SSiltC . Estimated concentrations of suspended sediment were used to estimate instantaneous and daily loads for total suspended sediment, suspended silt-clay, and suspended sand. Estimated daily suspended-sediment loads were not significantly different between upstream and downstream transects within the Kansas chute, and most individual daily loads within the chute were not significantly different between upstream and downstream transects when evaluated using overlap in daily 95-percent confidence intervals. The comparison of daily load values for upstream and downstream chute transects, as estimated from turbidity-based surrogate models for Kansas chute, documents the daily dynamic nature of sediment transport within the chute with a temporal resolution that is not practical with discrete suspended-sediment sampling alone. Comparisons of concentrations and loads from EWI samples collected from different transects within a study site resulted in few significant differences, but comparisons are limited by small sample sizes and large within-transect variability. When comparing the Missouri River upstream transect to the chute inlet transect, similar results were determined in 2012 as were determined in 2008&mdash;the chute inlet affected the amount of sediment entering the chute from the main channel. In addition, the Kansas chute is potentially affecting the sediment concentration within the Missouri River main channel, but small sample size and construction activities within the chute limit the ability to fully understand either the effect of the chute in 2012 or the effect of the chute on the main channel during a year without construction. Finally, some differences in SSC were detected between the Missouri River upstream transects and the chute downstream transects; however, the effect of the chutes on the Missouri River main-channel sediment transport was difficult to isolate because of construction activities and sampling variability.

Nebraska↗

Bathymetric and velocimetric surveys at highway bridges crossing the Missouri River near Kansas City, Missouri, August 2019, August 2020, and October 2020

Bathymetric and velocimetric data were collected by the U.S. Geological Survey, in cooperation with the Missouri Department of Transportation, near 9 bridges at 8 highway crossings of the Missouri River near Kansas City, Missouri, on August 13–14, 2019. A multibeam echosounder mapping system was used to obtain channel-bed elevations for river reaches about 1,550 to 1,660 feet longitudinally and generally extending laterally across the active channel from bank to bank during moderate flood-flow conditions. These surveys indicated the channel conditions at the time of the surveys and provided characteristics of scour holes that may be useful in developing predictive guidelines or equations for scour holes. These data also may be useful to the Missouri Department of Transportation as a low to moderate flood-flow assessment of the bridges for stability and integrity issues with respect to bridge scour during floods. Bathymetric data were collected around every pier that was in water, except around the nose of one pier that was surrounded by a persistent debris raft. Scour holes were present at most piers for which bathymetry could be obtained, except those on banks or surrounded by riprap. The observed scour holes at the surveyed bridges generally were examined with respect to shape and depth. Comparisons between bathymetric surfaces from previous surveys and this study do not indicate any consistent correlation in channel-bed elevations with streamflow conditions at the times of the surveys. The predominant overall scour observed between the various surveys implies the channel bed in the 2019 surveys might have been rebounding from more substantial scour caused by the high streamflow earlier in March and June 2019, which was the highest streamflow since 1993. Pier size and nose shape had a substantial effect on the size of the scour hole observed at a given pier. Many of the piers at the Kansas City area bridges have wide or blunt noses caused by exposed footings, seal courses, or caissons, which resulted in large, deep scour holes at most piers. Several of the structures had piers that were skewed to primary approach flow; and, at most of the structures, the scour hole was deeper and longer on the side of the pier with impinging flow than the leeward side, with some amount of deposition on the leeward side, as typically has been observed at piers skewed to approach flow. Limited additional bathymetric data were collected by the U.S. Geological Survey, in cooperation with Clarkson Construction, near the main channel piers of the U.S. Highway 169 (Broadway) and the Interstate 435 (Randolph) bridges on August 17 and October 23, 2020, to determine the channel-bed conditions before and after installation of scour countermeasures near those piers. Survey results from before and after installation of these countermeasures show these features had a substantial effect on mitigating the observed scour at these piers, particularly when compared to piers at other sites without such features.

Missouri↗

Geologic map of the upper Parashant Canyon and vicinity Mohave County, northwestern Arizona

The geologic map of the upper Parashant Canyon area covers part of the Colorado Plateau and several large tributary canyons that make up the western part of Arizona's Grand Canyon. The map is part of a cooperative U.S. Geological Survey and National Park Service project to provide geologic information for areas within the newly established Grand Canyon/Parashant Canyon National Monument. Most of the Grand Canyon and parts of the adjacent plateaus have been geologically mapped; this map fills in one of the remaining areas where uniform quality geologic mapping was needed. The geologic information presented may be useful in future related studies as to land use management, range management, and flood control programs for federal and state agencies, and private concerns. The map area is in a remote region of the Arizona Strip, northwestern Arizona about 88 km south of the nearest settlement of St. George, Utah. Elevations range from about 1,097 m (3,600 ft) in Parashant Canyon (south edge of map area) to 2,145 m (7,037 ft) near the east-central edge of the map area. Primary vehicle access is by dirt road locally known as the Mount Trumbull road; unimproved dirt roads and jeep trails traverse various parts of the map area. Travel on the Mount Trumbull road is possible with 2-wheel-drive vehicles except during wet conditions. Extra fuel, two spare tires and extra food and water are highly recommended when traveling in this remote area. The map area includes about 26 sections of land belonging to the State of Arizona, about 40 sections of private land, and a small strip of the Lake Mead National Recreation Area (southeast edge of the map area). The private land is mainly clustered around the abandoned settlement of Mt. Trumbull, locally known as Bundyville, and a few sections are scattered in the upper Whitmore Canyon area just south of Bundyville. Lower elevations within the canyons support a sparse growth of sagebrush, cactus, grass, creosote bush, and a variety of desert shrubs. Sagebrush, grass, cactus, cliffrose bush, pinyon pine trees, juniper trees, and some ponderosa pines thrive at higher elevations. Surface runoff in the north half of the map area drains northward towards the Virgin River in Utah via Hurricane Wash. In the south half of the area, it drains towards the Colorado River in Grand Canyon via Parashant and Whitmore Canyons. Upper Parashant and Whitmore Canyons are part of the physiography of the western Grand Canyon, but are not included within Grand Canyon National Park. The entire map area is now within the newly established Grand Canyon/Parashant Canyon National Monument (as of January, 2000), and is jointly managed by the Lake Mead National Recreational Area, Boulder City, Nevada, and the Bureau of Land Management, Arizona Strip District, St. George, Utah. Surface runoff in the north half of the map area drains northward towards the Virgin River in Utah via Hurricane Wash. In the south half of the area, it drains towards the Colorado River in Grand Canyon via Parashant and Whitmore Canyons. Upper Parashant and Whitmore Canyons are part of the physiography of the western Grand Canyon, but are not included within Grand Canyon National Park. The entire map area is now within the newly established Grand Canyon/Parashant Canyon National Monument (January, 2000), and is jointly managed by the Lake Mead National Recreational Area, Boulder City, Nevada, and the Bureau of Land Management, Arizona Strip District, St. George, Utah.

Arizona↗

Seasonal and spatial distribution patterns of finfish and selected invertebrates in coastal lagoons of northeastern Florida, 2002-2004

The U.S. Geological Survey conducted a survey of juvenile fisheries resources, in cooperation with the St. Johns River Water Management District and Volusia County, to establish baseline data on spatial and temporal distribution patterns of estuarine fish. The survey was conducted from November 2001 to March 2005 and the baseline data established for the survey in the Northern Coastal Basins were collected from January 2002 to December 2004. The study area included the bar-built estuaries ranging from just north of St. Augustine, Florida, south to Ponce de Leon Inlet. Sampling protocols developed by the Florida Fish and Wildlife Research Institute for their statewide Fisheries Independent Monitoring (FIM) program were replicated to allow for comparability with FIM program results. Samples were collected monthly from randomly selected stations based on a geographically stratified design. Finfish and selected invertebrates were collected using a 21.3-meter center-bag seine with a 3-millimeter mesh, and a 6.1-meter otter trawl with a 3-millimeter mesh liner. Total estimated fish and selected invertebrate densities were similar to estimates from FIM projects in adjacent areas and were characterized by similar dominant species. Preliminary analysis indicates that observed species distribution patterns were mainly a function of proximity to the three inlets within the study area. The two regions encompassing the northern Tolomato River and the Tomoka River and Basin are farthest from inlets and appear to function as oligohaline nursery areas. Those two areas had the greatest estimated densities of shellfish and juvenile sciaenid (drum) species associated with oligohaline waters (for example, Micropogonias undulatus, Sciaenops ocellatus and Cynoscion nebulosus). Samples near inlets, and between the two northern inlets, had greater estimated densities of species limited to euhaline waters, including juvenile clupeids collected at relatively high abundance and species of marine strays collected in low abundance. Based on correspondence analysis, seasonal variation dominated the ordination of seine samples and spatial variation dominated the ordination of trawl samples; this was due to differences in the number and timing of taxa found near inlets versus oligohaline regions. The absence of seagrass habitat in the Northern Coastal Basins is reflected by the absence of a seagrass-fish assemblage.

Scientific Investigations Report↗

California State Waters Map Series: Offshore of Refugio Beach, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within California&rsquo;s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of Refugio Beach map lies within the western Santa Barbara Channel region of the Southern California Bight. This geologically complex region forms a major biogeographic transition zone, separating the cold-temperate Oregonian province north of Point Conception from the warm-temperate California province to the south. The map area is in the southern part of the Western Transverse Ranges geologic province, which is north of the California Continental Borderland. Significant clockwise rotation&mdash;at least 90&deg;&mdash;since the early Miocene has been proposed for the Western Transverse Ranges province, and geodetic studies indicate that the region is presently undergoing north-south shortening. Uplift rates (as much as 0.5 mm/yr) that are based on studies of onland marine terraces provide further evidence of significant shortening. The coastal zone of this map area lies at the steep flank of the Santa Ynez Mountains. The crest of the range, which lies about 8 km from the shoreline (north of the map area), has a maximum elevation of about 780 m. This area is largely open space, partly used for livestock grazing, with no significant towns or population centers. Highway 101 crosses the map area, adjacent to and within a few hundred meters of the shoreline. The most significant developments are the recreational state beaches at El Capitan Beach and Refugio Beach. The beaches are subject to erosion each winter during storm-wave attack, and then they undergo gradual recovery or accretion during the more gentle wave climate of the late spring, summer, and fall months. The Offshore of Refugio Beach map area lies in the west-central part of the Santa Barbara littoral cell, which is characterized by west-to-east transport of sediment from Point Arguello on the northwest to Hueneme and Mugu Canyons on the southeast. Longshore drift rates have been reported to range from about 160,000 to 800,000 tons/yr, averaging 400,000 tons/yr. Sediment supply to the western and central part of the littoral cell, including the map area, is mainly from relatively small coastal watersheds. Within the map area, these coastal watersheds include (from east to west) Ca&ntilde;ada del Capitan, Tajiquas Creek, Arroyo Hondo, Ca&ntilde;ada del Molino, and several unnamed canyons and creeks. The Santa Ynez and Santa Maria Rivers, the mouths of which are 80 to 120 km northwest of the map area, are not considered significant sediment sources because Point Conception and Point Arguello provide obstacles to downcoast sediment transport and also because much of their sediment load is trapped in dams. The Ventura and Santa Clara Rivers, the mouths of which are about 70 km to the southeast of the map area, are not sediment sources for the map area. The offshore part of the map area consists of relatively flat and shallow continental shelf, which dips gently seaward (about 0.8&deg; to 1.0&deg;) so that water depths at the shelf break, roughly coincident with the California&rsquo;s State Waters limit, are about 80 to 100 m. This part of the Santa Barbara Channel is relatively well protected from large Pacific swells from the north and northwest by Point Conception and from the south and southwest by offshore islands and banks. The shelf is underlain by variable amounts of upper Quaternary marine and fluvial sediments deposited as sea level fluctuated in the late Pleistocene. In the map area, the shelf break is at depths of about 90 m and lies about 5.6 to 6.4 km offshore. Beyond the shelf break, the slope is steep (as much as about 7&deg;) and unstable. Several submarine landslides, including the large (130 km 2 ) Goleta landslide complex, have been documented offshore of Goleta, a few kilometers east of the map area. This compound slump complex may have been initiated more than 200,000 year ago, but it also includes three recent failures that may have been generated 8,000 to 10,000 years ago. A local, 10-m-high tsunami may have been generated from these failure events. Small folds related to local faulting are superimposed on the homocline that makes up the south flank of the Santa Ynez Mountains. One of these superimposed anticlines hosts the Molino gas field, which was discovered in 1962 and subsequently developed through directional drilling from onshore wells. The Oligocene Sespe and Vaqueros Formations are the reservoirs in the Molino gas field, and the map area includes numerous seafloor hydrocarbon seeps. Seafloor habitats in the broad Santa Barbara Channel region consist of significant amounts of soft, unconsolidated sediment interspersed with isolated areas of rocky habitat that support kelp-forest communities nearshore and rocky-reef communities in deep water. The potential marine benthic habitat types mapped in the Offshore of Refugio Beach map area are directly related to its Quaternary geologic history, geomorphology, and active sedimentary processes. These potential habitats, which lie primarily within the Shelf (continental shelf) but also partly within the Flank (basin flank or continental slope) megahabitats, primarily are composed of soft sediment interrupted by a few carbonate mounds. This homogeneous seafloor of sediment and low-relief bedrock provides promising habitat for groundfish, crabs, shrimp, and other marine benthic organisms.

California↗

Late Wisconsinan-Holocene paleogeography of Delaware Bay; a large coastal plain estuary

Analyses of an extensive grid of seismic reflection profiles along with previously published core data and modern sedimentary environment information from surrounding coastal areas permit an outline of the paleogeography of the large Delaware Bay estuary during the last transgression of sea level. During late Wisconsinan times, the Delaware River system eroded a dendritic drainage pattern into the gravelly and muddy sands of Tertiary and younger age beneath the southern half of the lower bay area. This system included the trunk valley of the ancestral river and a large tributary valley formed by the convergence of secondary streams along the Delaware coast. The evolution of the estuary from this drainage system proceeded as follows: (1) When local relative sea level was at -50 m, the head of the tide reached the present bay-mouth area. (2) At -40 m (possibly 15,000-12,000 yrs ago), the trunk valley of the drainage system was a tidal river that extended more than 30 km up the bay, and a small contiguous inlet existed at the bay mouth. (3) At -30 m (approximately 11,000-10,000 yrs ago), the estuary comprised two narrow passages formed by the drowning of the main and tributary river valleys, and the bay-mouth inlet was 5-6 km wide. (4) At -20 m (between 8000 and 7000 yrs ago), the two passages of the estuary were joined, except for a series of small islands on top of a low intervening ridge, and the inlet channel was 11 km wide. (5) At -10 m (between 6000 and 5000 yrs ago), the estuary was nearly continuous and encompassed about 60% of the present lower bay area. Thin, coarse-grained fluvial deposits accumulated initially within the main channels of the former drainage system as base level was elevated by rising sea level. During the subsequent development of the estuary, clayey silts were deposited rapidly beneath the nontidal estuarine depocenter (turbidity maximum) as it migrated through the bay area, and organic muds accumulated in tidal wetlands that occupied the mouths of tributaries and small marginal embayments. As the fetch and tidal prism of the estuary increased, narrow barrier and headland beaches, composed of fine to coarse sands, were formed locally along the bay shorelines. In the later stages of development, sediment scour, reworking and transport became the dominant processes within the open estuary. Data from this study demonstrate the great temporal and spatial variability of sedimentary deposits within large drowned river-valley estuaries and outline a model that can be used to interpret ancient estuarine strata. ?? 1988.

Delaware, New Jersey↗

Digital topographic data based on lidar survey of Mount Shasta Volcano, California, July-September 2010

The most voluminous of the Cascade volcanoes, northern California’s Mount Shasta, is a massive compound stratovolcano composed of at least four main edifices constructed over a period of at least 590,000 years. An ancestral Shasta volcano was destroyed by Earth’s largest known Quaternary subaerial debris avalanche, which filled Shasta Valley, northwest of the volcano. The Hotlum cone, forming the present summit, the Shastina lava dome complex, and the Black Butte lava dome on the southwest flank, were constructed during the early Holocene. As part of the American Recovery and Reinvestment Act (ARRA) of 2009, the U.S. Geological Survey was awarded funding for high-precision airborne lidar (light detection and ranging) data collection at several volcanoes in the Cascade Range. Data collection was arranged by the Oregon Lidar Consortium, administered by the Oregon Department of Geology and Mineral Industries (DOGAMI). The Oregon Lidar Consortium contracted with Watershed Sciences, Inc., to collect 1,220 square km of high-precision airborne lidar data. These data provide a digital map of the ground surface beneath forest cover with horizontal resolution of 1 m (average of 1.82 ground laser returns per square meter) and estimated vertical accuracy of ±4 centimeters (1 sigma), and horizontal accuracies of ±1.5 centimeters. These data will contribute to monitoring and description of natural hazards, the study of regional geology and volcanic landforms, and analysis of landscape modification during and after the next volcanic eruption at Mount Shasta. Survey Bounding Coordinates: West Bounding Coordinate: −122.438774 East Bounding Coordinate: −121.888382 North Bounding Coordinate: 41.564495 South Bounding Coordinate: 41.126339

California↗

Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008-May 2012) with a progress report for activities from March 2011 to November 2011

Introduction The U.S. Geological Survey (USGS) received a request from the Bureau of Reclamation (Reclamation) to provide monitoring and an evaluation of the effectiveness of habitat actions that Reclamation plans to implement in the Upper Columbia River basin, which includes the Methow River. This monitoring and evaluation program is to partially fulfill Reclamations part of the 2008 Biological Opinion for the Federal Columbia River Power System that includes a Reasonable and Prudent Alternative (RPA) to protect listed salmon and steelhead across their life cycle. The target species in the Methow River for this monitoring and restoration effort include Upper Columbia River (UCR) spring Chinook salmon ( Oncorhynchus tshawytscha ), UCR steelhead ( O. mykiss ), and bull trout ( Salvelinus confluentus ), which are listed as threatened or endangered under the Endangered Species Act. This report covers UCR activities performed by USGS personnel from March 2011 to November 2011. It involves collecting and analyzing data collected during pre-implementation (2008&ndash;2012) there will be a follow-up after actions are completed (2012&ndash;2014). The goal of Reclamation is to maximize the potential of habitat and improve proposed limiting factors affecting the middle Methow River subwatershed (Reclamation, 2010). The Middle Methow (M2) reach (river kilometer mile [rkm] 843.065 to 843.080) of the Methow River was selected as the treatment reach for this study based on possible stream restoration plans by Reclamation (fig. 1). The upper Methow River (rkm 843.094 and 843.080), Chewuch River, and the Methow River downstream of the Twisp River (rkm 843.065) are being sampled as reference and control reaches in this study (fig. 2). This report covers the third year in the pre-evaluation of the M2 reach and its side channels. Restoration of the M2 reach is scheduled for 2012, which is planned to be followed by a multi-year intensive post-evaluation period. The intent of the summary of information provided in this report is to fulfill the objectives and tasks submitted in a statement of work to Reclamation in November 2010 (Connolly and Martens, 2011). The study design provides data by which to assess potential fish response to a Reclamation habitat restoration effort focused to improve juvenile salmonid rearing habitat in the M2, which runs between the towns of Winthrop and Twisp, Washington (fig. 1). The pre-treatment phase of the study is designed so that specific questions about the response of target fish species (spring Chinook salmon, steelhead, and bull trout) to the restoration actions can be addressed. Effectiveness is being determined by measuring fish productivity and habitat connectivity of the restoration reach and adjoining reaches, and their tributaries. The study includes sampling efforts directed to understand the relationships between stream habitat and the abundance of various fish species and to assess the response of the fish community. To complement these measurements, we will use models to predict response to treatment, and we will update the model with empirically derived data as these data become available. This modeling effort is expected to inform us of data gaps, sensitivity of key variables, and ability to detect response based on variability of the data. The approach and actions taken or planned by Reclamation to modify off-channel habitat are largely untested as to their effectiveness to improve target fish species&rsquo; productivity and survival needs. Those documented strategies that identify both physical parameters and biological relationships and benefits have been identified (Reclamation, 2008). To assess biological performance, we plan to compare age structure, growth, and age at smolting between those fish that stay in natal areas versus those fish that move. To assess retention in, and movement from or into, the restoration reach, we have used a combination of within-reach and out-of-reach sampling. We are using passive integrated transponder (PIT) tags, a network of instream PIT tag interrogation systems, and smolt traps to assess differences in biological performance and the magnitude of retention in, and movement from and into, the restoration reach.

Washington↗

Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2020

The U.S. Army Corps of Engineers, Jacksonville District, is deepening the St. Johns River channel in Jacksonville, Florida, from 40 to 47 feet along 13 miles of the river channel beginning at the mouth of the river at the Atlantic Ocean, in order to accommodate larger, fully loaded cargo vessels. The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, monitored stage, discharge, and (or) water temperature and salinity at 26 continuous data collection stations in the St. Johns River and its tributaries. This is the fifth annual report by the U.S. Geological Survey on data collection for the Jacksonville Harbor deepening project. The report contains information pertinent to data collection during the 2020 water year, from October 2019 to September 2020. The addition of water-quality data collection at St. Johns River at Buffalo Bluff near Satsuma was the only modification to the previously installed network. Discharge and salinity varied widely during the data collection period, which included above-average rainfall for 3 of the 5 counties in the study area. Total annual rainfall for all counties ranked third among the annual totals computed for the 5 years considered for this study. Annual mean discharge at Clapboard Creek was highest among the tributaries, followed by Ortega River, Durbin Creek, Pottsburg Creek at U.S. 90, Cedar River, Trout River, Julington Creek, Pottsburg Creek near South Jacksonville, Dunn Creek, and Broward River, whose annual mean was lowest. Annual mean discharge at 8 of the 10 tributary monitoring sites was higher for the 2020 water year than for the 2019 water year, and the computed annual mean flow at Clapboard Creek was the highest over the 5 years considered for this study. The annual mean discharge for each of the main-stem sites was higher for the 2020 water year than for the 2019 water year except for Buffalo Bluff, which remained the same. Among the tributary sites, annual mean salinity was highest at Clapboard Creek, the site closest to the Atlantic Ocean, and was lowest at Durbin Creek, the site farthest from the ocean. Annual mean salinity data from the main-stem sites on the St. Johns River indicate that salinity decreased with distance upstream from the ocean, which was expected. Relative to annual mean salinity calculated for the 2019 water year, annual mean salinity at all monitoring locations was higher for the 2020 water year except at the tributary sites of Trout River, Dunn Creek, and Clapboard Creek, which were lower, and Durbin Creek, which remained the same. The 2020 annual mean salinity on the main-stem of the St. Johns River was the highest since the beginning of the study in 2016 at Dancy Point, Racy Point, Shands Bridge, below Shands Bridge, above Buckman Bridge, and Jacksonville (Acosta Bridge). Among the tributary sites, annual mean salinity rankings for 2020 were highest for Julington Creek and Ortega River, which were the second-highest on record for those sites.

Florida↗

Spatial and temporal variability of nutrients and algae in the Republican River and Milford Lake, Kansas, June through November 2017 and May through November 2018

Milford Lake has been listed as impaired and designated hypereutrophic because of excessive nutrient loading, specifically biologically available orthophosphate. It is the largest lake by surface area in Kansas and is a reservoir built for purposes including water supply and recreation. In 2015, the Kansas Department of Health and Environment (KDHE) divided the lake into three zones (Zones A, B, and C) for recreational monitoring of harmful algal blooms (HABs). Upstream Zone C has historically been more affected by HABs than Zones B and A, and Zone C has historically had the highest phosphorus concentrations. The U.S. Geological Survey, in cooperation with the KDHE, completed a study in 2017–18 to assess the spatial and temporal variability of nutrients and algae in the Republican River (the primary inflow to Milford Lake) and Milford Lake using spatially and temporally dense data. During the study period, discrete water-quality samples were collected at 36 lake sites, 21 river sites, and 1 pond. All samples were analyzed for nutrients; some samples were also analyzed for chlorophyll, phycocyanin, microcystin, and (or) phytoplankton community composition and abundance. Results from this study provide perspective for understanding the potential role nutrient and algal conditions have in facilitating the formation of HABs and may inform future actions to prevent and mitigate HABs and their potential effects on human and environmental health. In 2017, one low-flow floating synoptic on the Republican River into Zone C of Milford Lake and one 24-hour synoptic in Zone C of Milford Lake were completed. Results from the low-flow floating synoptic on July 17, 2017, at 21 river sites, 8 lake sites, and 1 pond site indicated that the Republican River was not contributing dissolved orthophosphate or total phosphorus concentrations higher than those in the main body of Milford Lake. No patterns in nutrient or total microcystin concentrations were evident from the 24-hour synoptic at two sites on August 24–25, 2017. Total nitrogen was dominated by total Kjeldahl nitrogen (TKN) at both sites. Different oscillation activity in algal biomass and chlorophyll at the two sites demonstrated the variable nature of algal accumulations and their effects on nutrient and dissolved oxygen concentrations. Different patterns in chlorophyll and microcystin concentrations indicate that the relation between algal biomass and cyanotoxin concentrations were different at the two sites, possibly because of differences among algal communities present at each site. Three whole-lake synoptics through Zones A, B, and C in Milford Lake were completed on July 10, August 9, and October 16–17, 2018, at 30 lake sites. Orthophosphate was consistently at least 77 percent of total phosphorus at all sites except the two most uplake sites. At the two most uplake sites, orthophosphate was between 52 and 72 percent of the total phosphorus present at the site. Concentrations of TKN were not consistently increasing or decreasing during 2018. Total nitrogen was dominated by TKN in July and August. Very low concentrations of dissolved nitrate plus nitrite indicate that the nutrient was likely tied up in algal biomass. By October, total nitrogen was approximately one-half TKN and one-half dissolved nitrate plus nitrite. Higher concentrations of dissolved orthophosphate and dissolved nitrate plus nitrite in October than in July and August were likely caused by reduced biological activity (less uptake of nutrients) and lower air and water temperatures. Multiple inflow events (streamflow greater than median daily value) between August and October also may have moved nutrients through the lake. Chlorophyll, phycocyanin, microcystin, and phytoplankton samples were collected at eight sites in 2018. Most sites had their highest chlorophyll concentrations in August. The three most uplake sites had their highest phycocyanin concentrations in July, whereas the other five sites had their highest phycocyanin concentrations in August. Two of 23 samples had detections of total microcystin (0.11 and 0.12 microgram per liter). Phytoplankton community composition mainly consisted of Bacillariophyta, Chlorophyta, Cryptophyta, and Cyanobacteria. Phytoplankton community composition and abundance data described broad seasonal patterns and did not capture the full range of possible conditions at each site.

Kansas↗