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Geology of the Arabian Peninsula: Sedimentary geology of Saudi Arabia

Systematic mapping of the sedimentary geology of Saudi Arabia by Arabian-American Oil Co. (Aramco) began in 1933. By 1959, exploration parties of one type or another had surveyed more than 1,300,000 square kilometers (500,000 square miles) of sedimentary outcrop. The foundation for sedimentary deposition is the Arabian Shield a vast Precambrian complex of igneous and metamorphic rocks that occupies roughly one-third of the Arabian Peninsula in the west and crops out sporadically along the southern coast. Since the outset of the Paleozoic Era the shield has been amazingly stable, subject only to gentle, epeirogenic movement. On this rigid land mass was deposited an aggregate total of nearly 5,500 meters (18,000 feet) of sedimentary rocks ranging in age from presumed Cambrian to Pliocene(?). Paleozoic, Mesozoic, and lower Tertiary strata are magnificently exposed in central Arabia where they crop out in a great curved belt bordering the shield. Here the landscape is dominated by a series of essentially parallel west-facing escarpments, each supported by a resistant limestone cap. Exposures are unusually good, and many rock units can be traced without significant interruption for 500 to nearly 1,000 km. Beds reflecting buried basement configuration dip gently and uniformly away from the escarpment region into the Persian Gulf and Rub' al Khali basins. East of the escarpment belt is a broad expanse of relatively low-relief terrain in which Tertiary and younger deposits effectively mask older units. Clues to the character of pre-Tertiary rocks in this large area, which includes the Rub' al Khali desert and most of northeastern Arabia, are afforded only by widely scattered bore holes and oil wells. In extreme northwestern Arabia, largely lower Paleozoic sedimentary rocks are exposed, although a basinal area bordering the Paleozoic rocks on the north is characterized by thick Upper Cretaceous to Tertiary strata. Tertiary to Recent volcanic rocks cover substantial parts of the area. In general the older sedimentary rocks are exposed in north-central and northwestern Arabia near the Precambrian basement where as much as 2,000 m of lower Paleozoic rocks are present. Although unfossiliferous, the lower 600 m can be equated, at least in part, to rocks of certain Cambrian age in Jordan. Higher beds contain intervals confidently dated as Lower Ordovician, Silurian, and Lower Devonian. Lower Paleozoic rocks are chiefly coarse-grained sandstone of terrestrial origin, although marine shale occurs at several levels and the upper 300 m is mainly shale with thin beds of limestone. Lower Paleozoic strata are succeeded in the central escarpment region by a thick sequence (about 1,000 m) of Upper Permian and Triassic sedimentary rocks. The initial deposit, the Khuff Formation, is mostly shallow-water limestone; overlying beds are nonmarine elastics except for thick carbonate units in the middle part of the section. Above the Triassic System is some 200 to 500 m of Lower and Middle Jurassic rocks which, near the middle of the escarpment region, are interbedded marine shale and shelf limestone. These grade to sandstone, in part continental, in the northern and southern areas of outcrop. The Middle Jurassic is overlain by a great sequence-of nearly pure carbonate rocks, highly fossiliferous and accurately dated as Upper Jurassic and early Lower Cretaceous. The Jurassic System is spectacularly displayed in central Arabia where it forms the backbone of the escarpment region the Tuwayq Mountains. Carbonate sedimentation was interrupted several times in the closing stages of the Jurassic b^ the onset of evaporite conditions which gave rise to cyclic deposits of anhydrite and calcarenite. The resulting sequence the Arab Formation is of prime importance for its porous carbonate members contain billions of barrels of proved oil reserves The carbonate sequence is succeeded by a thick body of late Lower and Middle Cretaceous sandstone. (The Middle Cretaceous Series and Epoch, as defined by European geologist-, are used in this report.) Late Lower Cretaceous rocks are nonmarine and appear only in the middle and southern parts of the escarpment region. Middle Cretaceous rocks, nonmarine in the south, become progressively more marine in the north where they follow a transgressive path northwest across older beds as far as Jordan. Upper Cretaceous and Eocene rocks, almost exclusively in limestone and dolomite facies, are extensively exposed alorc the eastern edge of the escarpment belt and continue northwest into Iraq. The sequence, with an average thickness of about 5^0 m, includes rocks of Upper Cretaceous, Paleocene, lower Eocene, and middle Eocene ages. The stratigraphic sequence above the Eocene consists of 200 to 600 m of Miocene and Pliocene rocks, mostly of nonmarine origin. These deposits a heterogeneous assemblage of marly sandstone, sandy marl, and sandy limestone blanket the Rub' al Khali and northeastern Arabia. Above the Miocene and Pliocene rocks are unconsolidated Quaternary deposits which comprise great sand deserts and widespread gravel sheets. Sand of the Rub' al Khali Desert alone covers about 600,000 sq km (230,000 sq mi) or most of southern Arabia. Two major structural provinces are recognized within the Arabian Peninsula and adjacent areas. One is the comparatively stable interior region whose rigidity is controlled by the Precambrian basement. The other is the great mobile belt of Taurus, Zagros, and Oman Mountains, bordering the stable region on the north and east. Saudi Arabia falls entirely within the stable region. The interior stable region contains the Arabian shield as well as the Arabian Shelf an extension of the basement thinly veneered with little-disturbed sedimentary rocks. Widespread structural events, presumably related to epeirogenic movement within the basement, have divided the Arabian Shelf into several distinct and significant structural elements the Interior Homocline, the Interior Platform, and several basinal areas. Bordering the shield is a great belt of sedimentary rocks whose dip basinward is so slight and uniform as to be impreceptible to the eye. This Interior Homocline has an average width of about 400 km and a persistent dip varying from slightly more than 1°00' in older units to less than 0°30' in the youngest. One structural feature of the homocline the central Arabian arch has greatly influenced the present surface distribution of sedimentary rocks in the interior escarpment region. The arch, which affects all rocks from the basement up, marks the area of maximum curvature of the homocline in central Arabia. Although the arch has a varied history, it is apparently a residual high between the periodically sinking Persian Gulf and Rub' al Khali basins rather than a true independent positive feature. Support for this concept conies from the presence of a great arc of tensional structures the central Arabian graben and trough system near the crest of the arch and along the hinge line between the Persian Gulf basin and the stable western block. Bordering the homocline is the Interior Platform, a remarkably flat area of varying width in which systematic dip off the crystalline core no longer prevails. Superimposed on the platform are several major north-south anticlinal trends which include the great oil fields of Arabia Adjacent to the platform are several basinal areas that have from time to time received thick sedimentary deposits. Such basinal sags have developed on the shelf in the northeastern Rub' al Khali, northern Persian Gulf, Dibdibah and Sirhan-Turayf areas.

Professional Paper↗

Wilcox group (Paleocene to Eocene) coals of the Sabine Uplift area, Texas and Louisiana

The Wilcox Group (Paleocene to Eocene) of the Sabine uplift, a structural arch in northeastern Texas and northwestern Louisiana (Figure 1), has lignite zones that approach subbituminous rank (see Chapter 4, this publication). These coals are among the highest quality resources known within the Gulf Coastal Plain because of their low ash yield and sulfur content. The surface expression of the Sabine uplift is defined by the contact between coal-bearing rocks of the Wilcox Group and overlying fluvial rocks of the Carrizo Sand, which is the basal unit of the Claiborne Group (Figures 2, 3). The Sabine uplift study area includes parts of Harrison, Marion, Nacogdoches, Panola, Rusk, Sabine, San Augustine, and Shelby Counties in Texas and Bossier, Caddo, De Soto, Natchitoches, Red River, and Sabine Parishes in Louisiana (Figure 1). Adjacent counties and parishes that include the subsurface Wilcox Group extend the regional Sabine uplift area. The Wilcox in the subsurface is underlain by the Midway Group (Figure 3), a mudstone-dominated marine sequence of Paleocene age. Quaternary alluvium and terrace deposits overlying the Wilcox Group at the surface are limited to areas of modern drainage. The total thickness of the Wilcox Group within the Sabine uplift area ranges from approximately 400 ft on outcrop to 2500 ft in subsurface (Kaiser, 1990). In a few places, the contact between the overlying Carrizo Sand and Wilcox Group is erosional, but in other places, the contact is gradational.

Louisiana, Texas↗

Translocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutris

Sea otters, Enhydra lutris , were once abundant along the nearshore areas of the North Pacific. The international maritime fur trade that ended in 1911 left 13 small remnant populations with low genetic diversity. Subsequent translocations into previously occupied habitat resulted in several reintroduced populations along the coast of North America. We sampled sea otters between 2008 and 2011 throughout much of their current range and used 19 nuclear microsatellite markers to evaluate genetic diversity, population structure, and connectivity between remnant and reintroduced populations. Average genetic diversity within populations was similar: observed heterozygosity 0.55 and 0.53, expected heterozygosity 0.56 and 0.52, unbiased expected heterozygosity 0.57 and 0.52, for reintroduced and remnant populations, respectively. Sea otter population structure was greatest between the Northern and Southern sea otters with further structuring in Northern sea otters into Western, Central, and Southeast populations (including the reintroduced populations). Migrant analyses suggest the successful reintroductions and growth of remnant groups have enhanced connectivity and gene flow between populations throughout many of the sampled Northern populations. We recommend that future management actions for the Southern sea otter focus on future reintroductions to fill the gap between the California and Washington populations ultimately restoring gene flow to the isolated California population.

North Pacific↗

Geologic map of the Suquamish 7.5' quadrangle and part of the Seattle North 7.5' x 15' quadrangle, Kitsap County, Washington

The Suquamish 7.5' quadrangle is in the center of the Puget Lowland, Washington. The quadrangle contains the northern two-thirds of Bainbridge Island and adjacent parts of the Kitsap Peninsula. Puget Sound and contiguous waterways form 35 percent of the map area. Maximum elevation is 137 m in the northwest corner of the quadrangle, west of Suquamish; the modal elevation is 44 m. The center of the quadrangle is 20 km west-northwest of downtown Seattle. Winslow, in the southeast corner of the quadrangle, is a 35-minute ferry ride from Seattle. The Suquamish quadrangle lies within the Salish Lowland physiographic province (Haugerud, 2004), a broad region in the forearc of the Cascade Volcanic Arc that extends from south of Olympia, Washington, to north of Campbell River, British Columbia, and includes both the Puget Lowland of western Washington and the Georgia Depression of northwestern Washington and southwestern British Columbia. To the east are the Cascade Range and Coast Mountains; to the west is the outer-arc high of the Coast Ranges. The Salish Lowland is the locus of late Cenozoic subsidence: Jones (1996) indicates as much as 1 km of unconsolidated fill beneath some areas. The Lowland is crossed by east-west topographic highs formed by bedrock uplifts. A northern San Juan high divides the Lowland into Georgia Depression and Puget Lowland subprovinces. A southern high, which lies athwart the south end of Bainbridge Island immediately south of the map area, coincides with the Seattle Fault Zone along which uplift has brought Eocene rocks to elevations of 800-1,200 m, 8-10 km higher than equivalent strata in the floor of the Seattle structural basin that underlies central and northern Bainbridge Island and areas to the east (Brocher and others, 2001; Blakely and others, 2002). Deformation along the Seattle Fault appears to be driven by north-south shortening of the Cascade forearc (Wells and others, 1998). Pleistocene glacial deposits underlie most of the map area. Most extensive are the various members of the Vashon Drift, deposited in the Vashon stade of the Fraser Glaciation of Armstrong and others (1965) between about about 17,000 years ago. This study was undertaken in response to (1) awareness of the hazard posed by future earthquakes in the Seattle Fault Zone, at the south edge of the quadrangle, and the need to marshal geologic evidence for the rate and style of deformation; (2) increasing population on Bainbridge Island and consequent pressure on groundwater resources; (3) concern about landslide hazards; and (4) awareness of the role that the nearshore zone plays in supporting marine resources.

Washington↗

Genetic analysis of red lionfish Pterois volitans from Florida, USA, leads to alternative North Atlantic introduction scenarios

The red lionfish Pterois volitans is a successful invasive predator across the western North Atlantic, Caribbean, and Gulf of Mexico. The southeast coast of Florida (USA) has been identified as the original introduction location, but genetic analyses including Florida lionfish have yet to investigate introduction scenarios. Here, we assessed the potential lionfish invasion pathways using 1795 sequences from previously published mitochondrial D-loop sequences (n = 1558) and new samples (n = 237) from 6 locations: The Bahamas, Florida Keys, northwest Florida, North Carolina, Panamá, and southeast Florida. None of the assessed Florida lionfish (n = 394) contained the H05-H09 D-loop haplotypes found in The Bahamas, North Carolina, and Bermuda (the Northern Region), indicating that Florida was not the source for these haplotypes. Assessing the mitochondrial population structure, the Florida east coast lionfish grouped with the Caribbean/Gulf of Mexico, as opposed to the Northern Region. To further explore connectivity and invasion pathways, 14 nuclear microsatellite loci were multiplexed on lionfish collected from 15 locations (n = 394). As found in other nuclear lionfish studies, the analyses identified a lack of population structure likely due to founding effects and/or inbreeding in aquaculture brood stocks. Together, the significant haplotype differences and H01-H04 haplotypes refute Florida as the sole source of red lionfish introduction. The results of this study support alternative invasion scenarios, in which Florida was colonized as a secondary introduction site or by individuals from the Northern Region. Understanding invasive species’ population boundaries and dispersal patterns informs local control efforts and management planning for future invasive species introductions.

Florida↗

Effect of straying, reproductive strategies, and ocean distribution on the structure of American shad populations

The use of species distribution models has proliferated, providing insights for sustainable management of migratory species in a globally changing environment. However, many of these models are based on statistical relationships developed from historical conditions that may not perform well under changing or even analogous conditions caused by climate change. In this paper, we used a mechanistic species distribution model called GR3D (Global Repositioning Dynamics for Diadromous Fish Distribution) to examine the integrated dynamics of American shad ( Alosa sapidissima ) populations across their native range along the Eastern U.S. coast, where the species demonstrates latitudinal variations in life histories and reproductive strategies. The initial design of the model was adapted to incorporate region-specific parameterization to fit the species ecology. Then, a sensitivity analysis was performed to test the influences of uncertain processes regarding American shad distribution at sea, straying and reproduction on key characteristics of the species distribution. The sensitivity analysis showed the influence of the Allee effect (i.e., “depensatory” process) and the homing rate (i.e., fidelity to the breeding sites) on the probability of presence and abundances among catchments and metapopulations estimated by the model. Contrary to the homing rate, the distance of straying did not change the estimated number of metapopulations or abundances. Homing strength, however, was quite influential. The integration of complex migration patterns during the marine phase (i.e., wintering and summering offshore areas) provided more likely estimates of the species' overall distribution. Overall, our study illustrated the utility of incorporating factors governing the large-scale distribution of migratory species to improve local management.

Ecosphere↗

Passage probabilities of juvenile Chinook salmon through the powerhouse and regulating outlet at Cougar Dam, Oregon, 2011

Cougar Dam near Springfield, Oregon, is one of several federally owned and operated flood-control projects within the Willamette Valley of western Oregon that were determined by the National Oceanic and Atmospheric Administration’s National Marine Fisheries Service in 2008 to impact the long-term viability of several salmonid stocks. In response to this ruling, the U.S. Army Corps of Engineers is looking for means to reduce impacts to salmonids, including improving downstream passage of juvenile salmonids at Cougar Dam. This study of juvenile Chinook salmon ( Oncorhynchus tshawytscha ) passage at Cougar Dam was conducted to inform decisions about potential improvements for downstream fish passage. The primary objective of the study was to estimate route-specific passage probabilities of yearling Chinook salmon at Cougar Dam. The study was conducted using fish from a nearby hatchery surgically implanted with radio transmitters and passive integrated transponder (PIT) tags and released near the entrance of a temperature control tower through which all water going through the dam must pass. Water passing through the temperature control tower may be routed through a penstock to a powerhouse with two Francis turbines, or to a spillway-like structure called the regulating outlet. Secondary objectives of the study were to estimate the probability that fish enter a bypass at a non-federal facility downstream, and to estimate dam-passage and in-river fish survival. Dam operating conditions during the study included an average forebay elevation of 1,580 feet (National Geodetic Vertical Datum of 1929) and an average of 48.2 percent of the total dam discharge of 1,106 cubic feet per second passing through a regulating outlet opening of 1.25 feet. Dam passage probability was greatest at night (0.8741 standard error [SE] 0.0265) and primarily through the regulating outlet (0.8896 SE 0.0617 day; 0.9417 SE 0.0175 night). The joint probability of entering the bypass at Leaburg Dam and being detected at the PIT system within the bypass was 0.0755 (SE 0.0363), but some fish were known to pass the PIT system undetected, indicating that the true probability of entering the bypass was underestimated. The estimated survival of fish passing through the temperature control tower, through the dam, and to a site at a bridge over the South Fork of the McKenzie River 3.9 kilometers downstream was 0.3680 (SE 0.1322) for fish passing through the powerhouse, and 0.4247 (SE 0.0440) for fish passing through the regulating outlet. The estimated in-river survival through the 37.3 kilometers from the bridge to a site at Leaburg Hatchery on the McKenzie River was 0.5857 (SE 0.2227) for fish that had passed through the powerhouse, and 0.4537 (SE 0.0551) for fish that had passed through the regulating outlet.

Oregon↗

Preliminary report on the geology of the continental slope adjacent to OCS Lease Sale 55, eastern Gulf of Alaska: Petroleum resource implications

Forty samples of Tertiary and Cretaceous outcrop or suspected outcrop were dredged along the 250-km-long northwest-trending continental slope between long 138°00' W. and 142°30' W. These samples, from water depths of 3,150 m to 200 m, combined with seismic reflection data, identify seven rock units in apparently normal stratigraphic position. From oldest to youngest they are: Unit A: Hard graywacke, argillite, and possible intrusive rocks of inferred Late Cretaceous age that crop out in the eastern part of the slope and probably underlie much of the Fairweather Ground. Unit B: At least 900 m of sandstone, conglomerate, shale, and subordinate basaltic volcanic rocks west of Yakutat Seavalley between 142° W. and 143° W. that is not dated but is probably of late Paleocene to early Eocene age. Unit C: 1,300 m of basaltic flow and pyroclastic rocks with associated clastic marine sedimentary rocks that makes up much of the rugged lower slope throughout the area. This sequence is largely, or entirely, of early Eocene age. Unit D: Up to 2,100 m of early and middle Eocene sandstone, conglomerate, siltstone, and tuffaceous organic-rich shale that partly overlies, and partly intertongues with, the volcanic unit. Unit E: 800 m of early to late Eocene and early Oligocene(?) organic-rich shale, tuffaceous shale, siltstone, and sandstone that partly intertongues with, and partly overlies units C and D. Unit F: 300+ m of siltstone, at least in part of late Oligocene age, that crops out locally along the upper slope where it unconformably overlies Unit E. Unit G: Up to 2,000 m of late Cenozoic (middle Miocene? and younger) clastic sedimentary rocks including abundant glaciomarine deposits that unconformably overlie all the older units. The early Tertiary sequence sampled on the continental slope differs strikingly in lithology and structure from coeval rocks exposed onshore or penetrated in unsuccessful exploratory wells on the adjacent mainland. Units B, D, and E include abundant source rocks that have undergone a thermal history resulting in local generation of hydrocarbons. Sandstones from Units D and E locally have secondary porosities up to 31 percent and permeabilities to 36 md. Seismic reflection data indicate that the sequence with the most favorable source and reservoir potential (Units B, D, E) dips northeastward beneath OCS Lease Sale 55 where it could be a favorable exploratory target if involved in suitable traps. Young anticlinal folds are not present, but other important traps are likely to include drape structures, horsts, and faults within the early Tertiary sequence and pinchouts, fault traps, or combination structural/stratigraphic traps along the northeastern margin of the early Tertiary basin.

Alaska↗

Coastal circulation and sediment dynamics in Maunalua Bay, Oahu, Hawaii: Measurements of waves, currents, temperature, salinity, and turbidity: November 2008-February 2009

High-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity were made in Maunalua Bay, southern Oahu, Hawaii, during the 2008–2009 winter to better understand coastal circulation, water-column properties, and sediment dynamics during a range of conditions (trade winds, kona storms, relaxation of trade winds, and south swells). A series of bottom-mounted instrument packages were deployed in water depths of 20 m or less to collect long-term, high-resolution measurements of waves, currents, water levels, temperature, salinity, and turbidity. These data were supplemented with a series of profiles through the water column to characterize the vertical and spatial variability in water-column properties within the bay. These measurements support the ongoing process studies being done as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program’s Pacific Coral Reef Project; the ultimate goal of these studies is to better understand the transport mechanisms of sediment, larvae, pollutants, and other particles in coral reef settings. Project Objectives The objective of this study was to understand the temporal variations in currents, waves, tides, temperature, salinity and turbidity within a coral-lined embayment that receives periodic discharges of freshwater and sediment from multiple terrestrial sources in the Maunalua Bay. Instrument packages were deployed for a three-month period during the 2008–2009 winter and a series of vertical profiles were collected in November 2008, and again in February 2009, to characterize water-column properties within the bay. Measurements of flow and water-column properties in Maunalua Bay provided insight into the potential fate of terrestrial sediment, nutrient, or contaminant delivered to the marine environment and coral larval transport within the embayment. Such data are useful for providing baseline information for future watershed decisions and for establishing guidelines for the U.S. Coral Reef Task Force’s (USCRTF) Hawaiian Local Action Strategy to address Land-Based Pollution (LAS-LBP) threats to coral reefs adjacent to the urbanized watersheds of Manualua Bay. Study Area Maunalua Bay is on the south side of Oahu, Hawaii, and is approximately 10 km long and 3 km wide. The bay is flanked by two large, dormant craters: Koko Head to the east and Diamond Head to the west. Rainfall in the watersheds that drain into Maunalua Bay ranges from more than 200 cm/year at the top of the Ko‘olau Range that borders the northwestern part of the bay to less than 70 cm/year to the east at Koko Head. Seven major channels flow into the bay, and all but one have been altered by engineering structures.

Hawaii↗

Changing Arctic ecosystems--research to understand and project changes in marine and terrestrial ecosystems of the Arctic

Ecosystems and their wildlife communities are not static; they change and evolve over time due to numerous intrinsic and extrinsic factors. A period of rapid change is occurring in the Arctic for which our current understanding of potential ecosystem and wildlife responses is limited. Changes to the physical environment include warming temperatures, diminishing sea ice, increasing coastal erosion, deteriorating permafrost, and changing water regimes. These changes influence biological communities and the ways in which human communities interact with them. Through the new initiative Changing Arctic Ecosystems (CAE) the U.S. Geological Survey (USGS) strives to (1) understand the potential suite of wildlife population responses to these physical changes to inform key resource management decisions such as those related to the Endangered Species Act, and (2) provide unique insights into how Arctic ecosystems are responding under new stressors. Our studies examine how and why changes in the ice-dominated ecosystems of the Arctic are affecting wildlife and will provide a better foundation for understanding the degree and manner in which wildlife species respond and adapt to rapid environmental change. Changes to Arctic ecosystems will be felt broadly because the Arctic is a production zone for hundreds of species that migrate south for the winter. The CAE initiative includes three major research themes that span Arctic ice-dominated ecosystems and that are structured to identify and understand the linkages between physical processes, ecosystems, and wildlife populations. The USGS is applying knowledge-based modeling structures such as Bayesian Networks to integrate the work.

Arctic↗

Stratigraphic cross sections of the Niobrara Interval of the Upper Cretaceous Cody Shale in the Bighorn Basin, Wyoming and Montana

The Bighorn Basin is one of many structural and sedimentary basins that formed in the Rocky Mountain foreland during the Laramide orogeny. The basin is nearly 180 miles long, 100 miles wide, and encompasses about 10,400 square miles in northern Wyoming and southern Montana. The basin is bounded by major basement uplifts that include the Pryor uplift on the northeast, the Beartooth uplift on the northwest, the Bighorn uplift on the east, and the Owl Creek uplift on the south. The northern margin includes a zone of faulting and folding referred to as the Nye-Bowler lineament. The western margin is formed by volcanic rocks of the Absaroka Range. Many important conventional oil and gas fields producing from reservoirs ranging in age from Cambrian through Tertiary have been discovered in this basin. In addition, an extensive unconventional overpressured basin-centered gas accumulation may be present in Cretaceous strata in the deeper parts of the basin. It has long been suggested that various Upper Cretaceous marine shales, including the Cody Shale, are the principal hydrocarbon source rocks for many of these accumulations. With recent advances and success in horizontal drilling and multistage fracture stimulation, there has been an increase in exploration and completion of wells in these marine shales in other Rocky Mountain Laramide basins that were traditionally thought of only as hydrocarbon source rocks. The stratigraphic cross sections presented in this report were constructed as part of a project carried out by the U.S. Geological Survey to characterize and evaluate the undiscovered continuous (unconventional) oil and gas resources of the Niobrara interval in the lower part of the Upper Cretaceous Cody Shale in the Bighorn Basin. These cross sections were constructed using borehole geophysical logs from wells drilled for oil and gas exploration and production. The stratigraphic interval extends from the upper part of the Frontier Formation to the middle part of the Cody Shale. The datum is the base of the “chalk kick” marker bed, a distinctive resistivity peak or zone in the lower part of the Cody Shale. A gamma ray and (or) spontaneous potential log was used in combination with a resistivity log to identify and correlate units. Marine molluscan index fossils collected from nearby outcrop sections were projected into the subsurface to help determine the relative ages of the strata and aid in correlation.

Montana, Wyoming↗

A step decrease in sediment concentration in a highly modified tidal river delta following the 1983 El Niño floods

Anthropogenic activities in watersheds can have profound effects on sediment transport through river systems to estuaries. Disturbance in a watershed combined with alterations to the hydro-climatologic regime may result in changes to the sediment flux, and exacerbate the impacts of extreme events (such as large-magnitude floods) on sediment transport. In the San Francisco Estuary, suspended sediment has been declining over the past 30 years as a result of declining sediment supply, contributing to dramatic changes in the ecology and geomorphology of the estuary. However, the decline has not been gradual. Recent observations of an abrupt decrease in suspended sediments in the San Francisco Bay have been explained by a model that suggests that the step change has occurred due to exceedance of a sediment regulation threshold that triggered the change from a sediment transport regime to a supply-limited system. We investigated structural changes in the historical record of total suspended solids (TSS) concentration measured in the upper estuary to verify the model predictions. TSS in the upper estuary exhibited an abrupt step decrease in 1983 corresponding to the record-high winter and summer flows from the 1982 to 1983 El Niño event. After this step change, TSS concentrations had a significant declining trend despite subsequent near-record high flows. The abrupt change in TSS followed by the declining trend provides evidence for the hypothesis of sediment supply limitation in the San Francisco Estuary.

California↗

Phytoplankton responses to experimental nitrogen and phosphorus loading in the eutrophic and colored Caloosahatchee River, Florida

The Caloosahatchee River, located in southwest Florida, is a eutrophic and colored river that flows from Lake Okeechobee westward into its estuary and the Gulf of America. Cyanobacterial harmful algal blooms (HABs) are a documented problem along this freshwater-to-marine waterway where nutrient enrichment has been identified as a key factor in bloom occurrence but has not been experimentally tested in the river. This study is the first to test the effects of inorganic nutrient loading on phytoplankton assemblages in the Caloosahatchee River and the effects of different nutrient sources on phytoplankton dynamics at different times of the year. Three independent, in situ experiments were conducted to test the effects of daily, incrementally increased ammonium, nitrate, and phosphate loading on phytoplankton at different times of the year (summer, fall, winter). Over the 72-hour enclosure period, phytoplankton abundance metrics (cell concentration, chlorophyll- a , and phycocyanin), dissolved oxygen, and pH increased, and fluorescent dissolved organic matter and turbidity decreased in all treatments and controls. Increased phytoplankton abundance metrics relative to controls were observed after 72 hours of exposure to elevated ammonium and nitrate in summer and only ammonium in winter, suggesting periodic nitrogen limitation; however, no treatment effects on phytoplankton assemblage structure in terms of resemblance and diversity metrics were found. Increases in total cell concentrations were driven by elevated growth rates of already dominant taxa but not sufficiently to form a visible bloom. Cyanobacteria consistently dominated the phytoplankton, particularly Aphanocapsa and Merismopedia , whereas the common HAB-forming Microcystis maintained consistently low abundance. This study provides new information on the ecology of phytoplankton assemblages in the Caloosahatchee River and could be used by water resources managers to evaluate strategies for controlling cyanobacterial HABs in the river.

Florida↗

Tectonic setting of the Yukon-Koyukuk basin and its borderlands, western Alaska

The Yukon-Koyukuk basin of western Alaska is composed of an arcuate belt of Jurassic and Early Cretaceous subduction-related volcanic and plutonic rocks (Koyukuk terrane) flanked by deep subbasins filled with mid-Cretaceous terrigenous sedimentary rocks. The basin is bordered on three sides by metamorphosed Proterozoic and Paleozoic continental rocks (Seward, Arctic Alaska, and Ruby terranes) and is separated from the metamorphic borderlands by a narrow, highly tectonized belt of oceanic crust and mantle rocks (composite Angayucham-Tozitna terrane). The oceanic and mantle rocks, which dip inward beneath the basin and are thrust outward onto the borderlands, are divided into three separate thrust panels: (1) a structurally lowest panel (Slate Creek) composed of phyllite and metagraywacke of probable Devonian age, (2) a middle panel (Narvak) composed of imbricated basalt, chert, and gabbro of Devonian to Early Jurassic age, and (3) a structurally highest panel (Kanuti) composed of gabbro and peridotite of probable Middle and Late Jurassic age. The three thrust panels appear to represent a reversely stacked sequence that progresses from continental slope deposits in the lower panel to cumulus and mantle peridotites in the upper. Metamorphic mineral K-Ar ages from garnet amphibolite on the sole of the upper panel suggest that the upper panel was emplaced on the middle panel in the Middle to Late Jurassic. Subsequent accretion of all three panels to the continental rocks of the borderlands occurred in the latest Jurassic and Early Cretaceous, synchronous with arc volcanism within the basin. Arc volcanism waned and the accretionary phase ended in the middle of Early Cretaceous time. Uplift and erosion of the metamorphic borderlands and the obducted oceanic rocks began in late Early Cretaceous and was accompanied by the rapid filling of two flanking subbasins with turbiditic sediments. In the latest Early Cretaceous and early Late Cretaceous, shallow marine and nonmarine conglomerates were deposited around the margins of the basin, and a prograding delta was built out from the southeast margin of the basin across the turbiditic subbasins and the remnant volcanic arc. In the Late Cretaceous, western Alaska was subjected to strong east-west compression which severely deformed both the Yukon-Koyukuk basin and the borderlands. Several widespread magmatic episodes in the mid- and Late Cretaceous and in early Tertiary transgress the basin boundaries and stitch together the accreted arc and oceanic terranes and the continental borderlands.

Journal of Geophysical Research Solid Earth↗

GIS compilation of data collected from the Pulley Ridge Deep Coral Reef region

Pulley Ridge is a chain of drowned barrier islands that extends almost 200 km in 60-90 m water depths (Fig. 1). This drowned ridge is located on the Florida Platform in the southeastern Gulf of Mexico about 250 km west of Cape Sable, Florida (Jarrett and others, 2005). These islands formed during the early Holocene marine transgression approximately 12,000 - 14,000 years before present, and were then submerged by sea level rise and preserved near the outer edge of the Florida Platform. The southern portion of Pulley Ridge is the focus of this study. This area hosts zooxanthellate scleractinian corals, green, red and brown macro algae, and a mix of deep and typically shallow-water tropical fishes. This largely photosynthetic community is unique in that it thrives with less than 5% of the light typically associated with shallow-water reefs with similar fauna. Several factors help to account for the existence of this unique deep-water community. First, the underlying drowned barrier islands provide both elevated topography and lithified substrate for the establishment of the hardbottom community. Second, the region is commonly bathed by the Loop Current, which brings relatively clear and warm water to this area. Third, the ridge's position on the continental shelf places it within the thermocline which provides nutrients to the reef during upwelling (Halley and others, 2003). The USGS has made two proposals to resource managers for the designation of marine protected areas based on the geophysical and photographic data in this report. The proposals describe areas that may require some regulatory protection of marine life utilizing the sea floor (Fig. 1). The first proposal is that the area of greatest hermatypic coral cover (Fig. 1) is considered for future management actions and designated a Habitat Area of Particular Concern (HAPC) by the Gulf of Mexico Fishery Management Council. HAPCs are identified on the basis of habitat level considerations: The importance of the ecological function provided by the habitat. The extent to which the habitat is sensitive to human-induced environmental degradation. Whether and to what extent development activities are or will be stressing the habitat. The rarity of the habitat type. The second proposed area is for Coral Essential Fish Habitat (CEFH, Fig. 1). CEFHs are defined as "those waters and substrate necessary to corals for spawning, breeding, feeding, or growth to maturity." The following definitions are provided for clarification: waters is defined as "aquatic areas and their associated physical, chemical, and biological properties that are used by corals" substrate means "sediment, hard bottom, structures underlying the waters, and associated biological communities" necessary means "the habitat required to support a sustainable population and the managed species' contribution to a healthy ecosystem" spawning,breeding, feeding, or growth to maturity covers the full life cycle of a species. The CEFH shown in Figure 1 is the greatest coral cover in the region as determined by the bottom photo and video transects acquired during this study. This report presents the geophysical and photographic data that were collected to describe the surficial and shallow subsurface geologic framework of the area where these deep-water corals are known to occur. The data types include multibeam bathymetry, sidescan-sonar imagery, images of high-resolution seismic-reflection profiles, and bottom photographs. In addition, the tracklines for the seismic data, locations of bottom photographs and camera drifts, and tracklines along which submersible and remotely operated vehicle (ROV) observations were made are contained in the GIS files accompanying this report. Unfortunately, video footage from the camera drifts, submersible, and ROV cruises is not available on this DVD due to the quantity of data. The bottom photograph data set has been previously published (Cross and others, 2004), however it is included in this publication in an effort to integrate the varying data sets in one location. This integration is accomplished through the GIS data included on this DVD.

Florida↗

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2018 and Spring 2019, fifth annual report

Introduction Kelp forests and rocky reefs are among the most recognized marine ecosystems and provide the primary habitat for several species of fishes, invertebrates, and algal assemblages (Stephens and others, 2006). In addition, kelp forests have been shown to be important carbon dioxide sinks (Wilmers and others, 2012) and are an important source of nearshore marine primary production (Duggins and others, 1989). These highly dynamic ecosystems are extremely variable, and both top-down and bottom-up ecological controls drive this rich trophic environment. Giant kelp ( Macrocystis pyrifera ) forests and the species that inhabit these ecosystems are influenced by several environmental conditions, such as wave exposure, water temperature, water clarity, bottom depth and composition, species composition, and the density of kelp and other algal assemblages (Schiel and Foster, 2015). However, in addition to “normal” variability, kelp forests can undergo extreme regime shifts from kelp canopy forested areas to barrens characterized by high densities of urchins and encrusting coralline algae (Harrold and Reed, 1985). San Nicolas Island (SNI), outermost of the California Channel Islands, is home to a diverse group of terrestrial and marine organisms and includes kelp bed and rocky reef habitats ( fig. 1 ). The SNI kelp forests not only provide food and shelter for fishes and invertebrates within the habitat, but also they support higher trophic level consumers such as marine birds and several marine mammal species including the southern sea otter ( Enhydra lutris nereis) , a major predator on sea urchins and other marine invertebrates. Owing to concern about the vulnerability of the California population, the U.S. Fish and Wildlife Service (USFWS) translocated 140 southern sea otters from the central California coast to SNI between 1987 and 1990. Although only approximately 14 translocated otters are thought to have remained at SNI (U.S. Fish and Wildlife Service, 2012), their population at the island has increased and is currently greater than 120 individuals (Hatfield and others, 2019). Sea otters are a natural part of the kelp forest ecosystem, but their presence has implications for community dynamics as they repopulate a region from which they were extirpated in the 19th century. At SNI, sea otters have been concentrated mostly around the west end of the island, with some use of the south side and very little, but expanding, use of the northeast side. An ecosystem shift from urchin dominated to kelp dominated, that occurred at a site at the west end of the island in the early 2000s, though initiated by sea urchin disease, was likely facilitated to some degree by sea otter foraging (Kenner and Tinker, 2018). These ecosystems also are the target of many fisheries, including urchin and lobster. Urchin fisheries, which target the larger red sea urchin, may release the smaller but more mobile purple sea urchin from competitive control (Dayton and others, 1998). Lobster fisheries may release purple sea urchins from predatory control (Lafferty, 2004). Owing to the distance from the mainland, however, SNI kelp forests and reefs have been somewhat protected from the degree of harvest and other anthropogenic impacts experienced by the southern California mainland. Invasive species are another issue, and there are a few invasive subtidal macroalgae of concern in southern California waters. Although the brown alga Sargassum muticum has been established at the island for decades, S. horneri has only recently been seen at SNI and, so far, the invasive kelp Undaria pinnatifida and the green alga Caulerpa taxifolia have not been observed there. Sargassum horneri , in particular, has demonstrated a capability to outcompete native kelps at some of the other Channel Islands but it is unclear what indirect effects it may have on community structure (Marks and others, 2015). Because the surrounding kelp forests fall within the management boundary of the SNI Integrated Natural Resources Management Plan (INRMP; U.S. Navy, 2015), USGS works with the Navy to provide surveys of this ecologically important ecosystem that inform natural resource managers of trends in the population abundance of particular species. In addition, long-term surveys allow for an understanding of potential changes in species diversity and community composition as a result of trophic or other interactions. The U.S. Geological Survey (USGS) implemented a kelp forest monitoring program for the U.S. Navy at San Nicolas Island in 2014, building on sites and methods established by USFWS scientists in 1980 ( appendix 1 ). This report focuses on data collected during sampling expeditions to these sites in fall 2018 (October 2–5) and spring 2019 (April 3–6). Together they will be herein referred to as year 5 because, although the trips were made in different calendar years, they were approximately 6 months apart and were conducted under the fifth year of this contract. The previous sampling year (fall 2017 and spring 2018) is referred to as year 4. The year 5 data are compared with data collected during eight trips from fall 2014 through spring 2018. Differences in counts between these expeditions can result from seasonal factors, stochastic variation, or sampling error, but temporal comparison can reveal population trends. Where appropriate, long-term data collected during the 33 years prior to the implementation of these slightly revised protocols will be presented in order to lend some context to the observations reported here. Genus and species names used in this report are those currently recognized as valid in the Integrated Taxonomic Information System (ITIS.gov). Upon first use, the name recognized as valid by the World Register of Marine Species (WoRMS; marinespecies.org) is shown in brackets if different. The exception is Sargassum horneri which does not show up in any discernable form in ITIS.gov.

California↗

California State Waters Map Series — Offshore of Salt Point, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of Salt Point map area is located in northern California, about 110 km north of San Francisco and 50 km south of Point Arena. The map area includes three California Marine Protected Areas: the southern portion of the Stewarts Point State Marine Reserve, the Salt Point State Marine Conservation Area, and the Gerstle Cove State Marine Reserve. The coast and shoreline are rugged and scenic, characterized by rocky promontories, steep bluffs capped by bare to forested marine terraces, kelp-rich coves, and nearshore rocks and pinnacles. The largely undeveloped onshore part of the map area is used primarily for grazing and recreation. U.S. Highway 1 extends along the coast through the map area, passing through Salt Point State Park, Kruse Rhododendron State Natural Reserve, and Stillwater Cove Regional Park. Sandy beaches are uncommon, present only in relatively protected coves. The seafloor in the map area extends from the shoreline to water depths of about 90 to 100 m. The nearshore to inner shelf area (to water depths of about 50 to 60 m) typically dips seaward about 1.0° to 1.5° and is underlain by bedrock and sand-sized to coarser grained sediment. The midshelf, underlain predominantly by muddy sediments, slopes more gently (less than 0.5°). Surficial and shallow sediments were deposited in the last about 21,000 years during the approximately 125-m sea-level rise that followed the last major lowstand associated with the Last Glacial Maximum, at which time the entire Offshore of Salt Point map area was emergent and the shoreline was about 20 km west of the present-day shoreline. Tectonic influences that impact the shelf morphology and geology in the map area are related to local faulting, folding, uplift, and subsidence. The onshore part of the map area is cut by the northwest-striking San Andreas Fault—the right-lateral transform boundary between the North American and Pacific tectonic plates with an estimated slip rate of about 17 to 25 mm/yr in this area. The region between Fort Ross and Point Arena, west of the San Andreas Fault, is the known as the “Gualala Block” on the basis of its distinctive geology. The Gualala Block consists of a thick, discontinuous Upper Cretaceous to Miocene stratigraphic section, however, only the submarine fan deposits of the Paleocene and Eocene German Rancho Formation are exposed along the coast in the Offshore of Salt Point map area. The German Rancho Formation also forms all of the rugged seafloor bedrock outcrops in the map area. The western boundary of the Gualala Block lies 3 to 5 km offshore, perhaps at the shore-parallel Gualala Fault. High-resolution seismic-reflection data reveal shallow folding and faulting in inferred upper Pleistocene strata along the Gualala Fault trend, suggesting this structure is now or has been recently active. The last ground rupture in the map area occurred during the devastating great 1906 California earthquake (M7.8, 4/18/1906), thought to have nucleated on the San Andreas Fault about 100 kilometers to the south offshore of San Francisco. Circulation over the continental shelf in the map area is dominated by the southward-flowing California Current, the eastern limb of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. The current flow generally is southeastward during the spring and summer; however, during the fall and winter, the otherwise persistent northwest winds are sometimes weak or absent, causing the California Current to move farther offshore and the Davidson Current, a weaker, northward-flowing countercurrent, to become active. Throughout the year, this part of the central California coast is exposed to four wave climate regimes: the north Pacific swell, the southern swell, northwest wind waves, and local wind waves. The north Pacific swell dominates in winter months, with wave heights at offshore buoys ranging from 2 to 10 m and wave periods ranging from 10 to 25 s. During summer months, the largest waves come from the southern swell, generated by storms in the south Pacific and offshore Central America. Characteristically, these swells have smaller wave heights (0.3 to 3 m) and similarly long periods (range 10 to 25 s). Northwest wind waves affect the coast throughout the year, while local wind waves are most common from October to April. These two wind-wave regimes typically have wave heights of 1 to 4 m and short periods (3 to 10 s). Potential marine benthic habitats in the Offshore of Salt Point map area include unconsolidated continental shelf sediments, mixed continental shelf substrate, and hard continental shelf substrate. Rocky-shelf outcrops and rubble are considered to be promising potential habitats for rockfish and lingcod, both of which are recreationally and commercially important species.

California↗

Pathology of tissue loss in three key gorgonian species in the Mediterranean Sea

The Mediterranean is known for its marine biodiversity, especially gorgonian forests. Unfortunately, these are experiencing rapid declines due to climate change, manifested by repeated marine heat waves resulting in mass mortality events since the early 1990 s. To better understand why gorgonians are declining, more systematic approaches to investigate the exact causes are needed, and pathology may aid in this goal. We described gross and microscopic pathology of tissue loss in three key gorgonian species in the Mediterranean region, Paramuricea clavata , Eunicella cavolini , and Leptogorgia sarmentosa , that were all experiencing various degrees of acute to subacute tissue loss characterized by exposed axial skeleton sometimes partly colonized by epibionts and thinning of adjacent tissues. The most significant variety of lesions was seen in P. clavata followed by L. sarmentosa and E. cavolini. For all species, dissociation of gastrodermal cells was the dominant microscopic lesion followed by necrosis of the gastrodermis. Ciliates invading gastrodermis and associated with necrosis of polyps were seen only in E. cavolini. Epidermal tissue loss was seen only in L. sarmentosa , while P. clavata was distinguished by a prominent inflammatory response and unidentified dark round structures within the tentacle epidermis and gastrodermis with no host response. Further work to understand the cause of death in gorgonians is needed, particularly to elucidate the role of ciliates and environmental co-factors or infectious agents not visible on light microscopy, as well as applications of additional tools such as cytology.

Journal of Invertebrate Pathology↗