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USGS2018

Delindeite titanosilicates and lourenswalsite, two new from the Magnet Cove region, Arkansas

Delindeite and lourenswalsite are two new barium titanosilicate minerals found as microscopic crystals in miarolitic cavities in nepheline syenite in the Diamond Jo quarry, Hot Spring County, Arkansas. Delindeite is found as aggregates of flake-like crystallites in compact spherules, light pinkish grey in colour, with a resinous, pearly lustre. The flakes are biaxial positive with average n ∼ 1.813; the measured density is 3.3 g/cm 3 . Electron diffraction revealed a monoclinic unit cell in space group C 2 l m or subgroup, with a = 21.617(13), b = 6.816(5), c = 5.383(3) Å, β = 94.03(5)° (refined from X-ray powder data). The strongest X-ray lines are ( hkl , d obs , I rel ): (200, 10.80, 100); (311, 3.54, 24); (6̄01, 3.083, 28); (601, 2.888, 31); (2̄21, 2.806, 20); (910, 2.262,18). The crystals are submicroscopically twinned on (100) and also produce additional continuous diffraction streaks parallel to a *, which double the b and c axes. The formula derived from electron and ion probe analyses (H 2 O by difference), as constrained by density and molar volume data, is approximately (Na,K) 2.7 (Ba,Ca) 4 (Ti,Fe,Al) 6 Si 8 O 26 (OH) 14 , with Na > K, Ba ≫ Ca, Ti ≫ Fe,Al; Z = 1. Lourenswalsite occurs as very thin hexagonal plates in rosettes, silver grey to light brownish grey in colour. The crystals are biaxial negative with very low 2 V angle. Indices of refraction are n α = 1.815, n β ≈ n γ = 1.840; the measured density is 3.17 g/cm = 1.840; the measured density is 3.17 g/cm 3 . X-ray and electron diffraction show a sharp pseudohexagonal lattice with a = 5.244 Å, but extremely diffuse diffraction streaks normal to the hk 0 plane. In these streaks a period of 20.5 Å can be discerned. A hexagonal unit cell with a = 5.244(2) Å, c = 20.49(3) Å can be refined from the powder diffraction data but does not account for some lines, probably because of extreme layer disorder as shown by precession single-crystal patterns. The strong X-ray powder lines are (002, 10.22, 20); (-, 3.93, 20); (111, 2.608, 100); (300, 1.5145, 80); (220, 1.3111, 25). The formula given by microprobe analyses, constrained by density and molar volume data, is approximately (K,Ba) 2 (Ti,Mg,Ca,Fe) 4 (Si,Al,Fe) 6 O 14 (OH) 12 with K > Ba, Ti ≫ (Mg,Ca,Fe), Si > Al > Fe; Z = 1. These minerals are formed under oxidizing weathering conditions, and iron is assumed to be in the Fe 3+ state.

Arkansas↗

USGS2017

Isolation and characterization of the fall Chinook aquareovirus

Background Salmon are paramount to the economy, ecology, and history of the Pacific Northwest. Viruses constitute one of the major threats to salmon health and well-being, with more than twenty known virus species that infect salmon. Here, we describe the isolation and characterization of the fall Chinook aquareovirus, a divergent member of the species Aquareovirus B within the family Reoviridae . Methods The virus was first found in 2014 as part of a routine adult broodstock screening program in which kidney and spleen tissue samples from healthy-appearing, adult fall Chinook salmon ( Oncorhynchus tshawytscha ) returning to a hatchery in Washington State produced cytopathic effects when inoculated onto a Chinook salmon embryo cell line (CHSE-214). The virus was not able to be confirmed by an RT-PCR assay using existing aquareovirus pan-species primers, and instead was identified by metagenomic next-generation sequencing. Metagenomic next-generation sequencing was used to recover the full genome and completed using 3′ RACE. Results The genome of the fall Chinook aquareovirus contains 11 segments of double-stranded RNA totaling 23.3 kb, with each segment flanked by the canonical sequence termini found in the aquareoviruses. Sequence comparisons and a phylogenetic analysis revealed a nucleotide identity of 63.2% in the VP7 gene with the Green River Chinook virus, placing the new isolate in the species Aquareovirus B . A qRT-PCR assay was developed targeting the VP2, which showed rapid growth of the isolate during the initial 5 days in culture using CHSE-214 cells. Conclusions This sequence represents the first complete genome of an Aquareovirus B species. Future studies will be required to understand the potential pathogenicity and epidemiology of the fall Chinook aquareovirus.

Virology Journal↗

USGS2008

Evidence for an apical Na-Cl cotransporter involved in ion uptake in a teleost fish

Cation-chloride cotransporters, such as the Na+/K +/2Cl- cotransporter (NKCC) and Na+/Cl - cotransporter (NCC), are localized to the apical or basolateral plasma membranes of epithelial cells and are involved in active ion absorption or secretion. The objectives of this study were to clone and identify 'freshwater-type' and 'seawater-type' cation-chloride cotransporters of euryhaline Mozambique tilapia (Oreochromis mossambicus) and to determine their intracellular localization patterns within mitochondria-rich cells (MRCs). From tilapia gills, we cloned four full-length cDNAs homologous to human cation-chloride cotransporters and designated them as tilapia NKCC1a, NKCC1b, NKCC2 and NCC. Out of the four candidates, the mRNA encoding NKCC1a was highly expressed in the yolk-sac membrane and gills (sites of the MRC localization) of seawater-acclimatized fish, whereas the mRNA encoding NCC was exclusively expressed in the yolk-sac membrane and gills of freshwater-acclimatized fish. We then generated antibodies specific for tilapia NKCC1a and NCC and conducted whole-mount immunofluorescence staining for NKCC1a and NCC, together with Na+/K+-ATPase, cystic fibrosis transmembrane conductance regulator (CFTR) and Na+/H+ exchanger 3 (NHE3), on the yolk-sac membrane of tilapia embryos acclimatized to freshwater or seawater. The simultaneous quintuple-color immunofluorescence staining allowed us to classify MRCs clearly into four types: types I, II, III and IV. The NKCC1a immunoreactivity was localized to the basolateral membrane of seawater-specific type-IV MRCs, whereas the NCC immunoreactivity was restricted to the apical membrane of freshwater-specific type-II MRCs. Taking account of these data at the level of both mRNA and protein, we deduce that NKCC1a is the seawater-type cotransporter involved in ion secretion by type-IV MRCs and that NCC is the freshwater-type cotransporter involved in ion absorption by type-II MRCs. We propose a novel ion-uptake model by MRCs in freshwater that incorporates apically located NCC. We also reevaluate a traditional ion-uptake model incorporating NHE3; the mRNA was highly expressed in freshwater, and the immunoreactivity was found at the apical membrane of other freshwater-specific MRCs.

Journal of Experimental Biology↗

USGS2013

A thermogenic secondary sexual character in male sea lamprey

Secondary sexual characters in animals are exaggerated ornaments or weapons for intrasexual competition. Unexpectedly, we found that a male secondary sexual character in sea lamprey (Petromyzon marinus ) is a thermogenic adipose tissue that instantly increases its heat production during sexual encounters. This secondary sexual character, developed in front of the anterior dorsal fin of mature males, is a swollen dorsal ridge known as the ‘rope’ tissue. It contains nerve bundles, multivacuolar adipocytes and interstitial cells packed with small lipid droplets and mitochondria with dense and highly organized cristae. The fatty acid composition of the rope tissue is rich in unsaturated fatty acids. The cytochrome c oxidase activity is high but the ATP concentration is very low in the mitochondria of the rope tissue compared with those of the gill and muscle tissues. The rope tissue temperature immediately rose up to 0.3°C when the male encountered a conspecific. Mature males generated more heat in the rope and muscle tissues when presented with a mature female than when presented with a male (paired t-test, P<0.05). On average, the rope generated 0.027±0.013 W cm -3 more heat than the muscle in 10 min. Transcriptome analyses revealed that genes involved in fat cell differentiation are upregulated whereas those involved in oxidative-phosphorylation-coupled ATP synthesis are downregulated in the rope tissue compared with the gill and muscle tissues. Sexually mature male sea lamprey possess the only known thermogenic secondary sexual character that shows differential heat generation toward individual conspecifics.

Journal of Experimental Biology↗

USGS2024

Woolly erionite from the Reese River zeolite deposit, Lander County, Nevada, and its relationship to other erionites

Woolly erionite from the Reese River deposit, Nevada, is identical in appearance to that at the type locality, near Durkee, Oregon. Both of these erionites differ in appearance from all other erionite reported in the past 20 years from diverse rocks throughout the world which are described as prismatic or acicular in habit. The non-woolly erionites are especially common as microscopic crystals in diagenetically altered vitroclastic lacustrine deposits of Cenozoic age. The Reese River woolly erionite fills joints in gray to brownish-gray lacustrine mudstone of probably Pliocene age, in a zone about 1 m thick beneath a conspicuous gray vitric tuff. Compact masses of long, curly, woolly erionite fibers are in the plane of the joint and locally are associated with opal. Indices of refraction are ω = 1.468 and ε = 1.472; hexagonal unit-cell parameters are a = 13.186(2) Å, c = 15.055(1) Å, and V = 2267.1(0.9) Å 3 . A chemical analysis of woolly erionite yields a unit-cell composition of: Na 1.01 K 2.84 Mg 0.3 Ca 1.69 Al 8.18 Si 27.84 O 72 · 28.51H 2 O.

Clays and Clay Minerals↗

USGS2006

In situ study of mass transfer in aqueous solutions under high pressures via Raman spectroscopy: A new method for the determination of diffusion coefficients of methane in water near hydrate formation conditions

A new method was developed for in situ study of the diffusive transfer of methane in aqueous solution under high pressures near hydrate formation conditions within an optical capillary cell. Time-dependent Raman spectra of the solution at several different spots along the one-dimensional diffusion path were collected and thus the varying composition profile of the solution was monitored. Diffusion coefficients were estimated by the least squares method based on the variations in methane concentration data in space and time in the cell. The measured diffusion coefficients of methane in water at the liquid (L)-vapor (V) stable region and L-V metastable region are close to previously reported values determined at lower pressure and similar temperature. This in situ monitoring method was demonstrated to be suitable for the study of mass transfer in aqueous solution under high pressure and at various temperature conditions and will be applied to the study of nucleation and dissolution kinetics of methane hydrate in a hydrate-water system where the interaction of methane and water would be more complicated than that presented here for the L-V metastable condition. ?? 2006 Society for Applied Spectroscopy.

Applied Spectroscopy↗

USGS1965

Infectious pancreatic necrosis: its detection and identification

Ultimate control of infectious pancreatic necrosis (IPN) in hatcheries depends largely upon learning where the virus occurs. To detect the presence of virus either susceptible fish or susceptible fish cell cultures may be used as test systems. In modern virology, it is generally agreed that cell cultures are more convenient, are usually a much more sensitive test system, and allow more rapid determinations.

Progressive Fish-Culturist↗

USGS1986

Susceptibility of salmonids to furunculosis: Differences between serum and mucus responses against Aeromonas salmonicida

At the Reeds Creek (West Virginia) state hatchery, mortality from enzootic furunculosis is most severe among brown trout Salmo trutta, intermediate in brook trout Salvelinus fontinalis, and virtually nonexistent in rainbow trout Salmo gairdneri. In each species, survivors of epizootics had developed similar levels of protective antibodies in their sera as demonstrated by microtiter agglutination and passive immunization experiments. We concluded that serum antibodies were not related to graded differences in resistance to furunculosis. These same fishes, however, produced a mucus precipitin that reacted with cell‐free bacterial extracts in single‐radial immunodiffusion assays. The mucus precipitin activity correlated with the resistance of the three species to furunculosis. Breeding studies with brown trout also showed that fish selected for a high level of mucus precipitin activity against Aeromonas salmonicida, the cause of fish furunculosis, produced progeny that were more resistant to furunculosis than other progeny produced from random matings. The nonspecificity of the mucus precipitin reaction was also confirmed by reactions with cell‐free extracts from Vibrio anguillarum and Aeromonas hydrophila.

West Virginia↗

USGS1999

Dietary effects of metals-contaminated invertebrates from the Coeur d'Alene River, Idaho, on cutthroat trout

Benthic macroinvertebrates with elevated concentrations of metals were collected from the Coeur d'Alene (CDA) River, Idaho, pasteurized, and fed to cutthroat trout Oncorhynchus clarki in the laboratory from start of feeding until 90 d posthatch. Invertebrates were collected from two sites known to contain elevated concentrations of metals: near Pinehurst in the South Fork of the CDA River and at Cataldo, approximately 5 km below the confluence of the South Fork and the North Fork. Invertebrates collected from a relatively clean site in the North Fork were used as a reference diet. We performed measurements of fish health that indicate reduced fitness of fish fed the South Fork and Cataldo diets. Effects measured were reduced feeding activity, increased number of macrophage aggregates and hyperplasia of cells in the kidney, degeneration of mucosal epithelium in the pyloric caecae, and metallothionein induction. These effects would likely reduce growth and survival of fish in the wild. Vacuolization of glial cells were also observed in fish fed the Cataldo diet. Metals in the water often exacerbated the histological effects observed. Although the invertebrates collected near Cataldo had lower concentrations of arsenic (As), cadmium (Cd), copper (Cu), lead (Pb), and zinc (Zn) than the invertebrates from the South Fork, fish fed the Cataldo diet had equally high or higher concentrations of all metals except as by day 44. The Cataldo diet also caused the most deleterious effects on survival and growth. These findings are especially important for early life stage fish, whose diet consists wholly of benthic macroinvertebrates. Therefore, fish feeding on invertebrates in the CDA River below the Bunker Hill smelting complex are at risk of reduced fitness.

Transactions of the American Fisheries Society↗

USGS1998

Elicitation of macrophages from the peritoneal cavity of channel catfish

Four chemicals were evaluated for elicitation of macrophages in peritoneal cavities of 250–300‐g healthy channel catfish Ictalurus punctatus. Cellular exudates were collected at 3, 5, 7, 10, 14, and 20 d following intraperitoneal injections with squalene, Freund's incomplete adjuvant (FIA), goat serum, thioglycollate, or as a control, phosphate‐buffered saline. Injection with either squalene or FIA induced significantly greater ( P ⩽ 0.0001) macrophage recruitment than the other chemicals. The effectiveness of squalene and FIA was compared further by macrophage collection daily for 7 d. Squalene and FIA elicited similarly high macrophage responses ( P ⩽ 0.0450), the highest being 3.43 × 10 6 macrophages/mL (SE, 2.4 × 10 6 ) at 99% purity at day 2 and 2.1 × 10 6 macrophages/mL (SE, 0.7 × 10 6 ) at day 14 at 80% purity, respectively. In both experiments, the time after injection was not statistically significant, nor was there an interaction between time and chemicals. The occurrence of cells other than macrophages decreased with time to yield macrophage recoveries of 47–99% for squalene and 30–80% for FIA. Two subsets of macrophages were observed by means of flow cytometry. As demonstrated by chemiluminescence, the squalene‐elicited cells produced high‐energy oxygen compounds important to the phagocytic process.

Journal of Aquatic Animal Health↗

USGS2000

Correlation of transforming growth factor-β messenger RNA (TGF-β mRNA) expression with cellular immunoassays in Triamcinolone-treated captive hybrid striped bass

Assessing fish immune status with molecular markers has been hampered by a lack of specific reagents. A quantitative polymerase chain reaction (PCR) method (reverse transcription quantitative–competitive PCR, RT-qcPCR) for measuring transforming growth factor-β (TGF-β) transcription from a broad range of teleost fish has recently been developed. The quantitative PCR now permits monitoring production of this important immunosuppressive cytokine in response to immunomodulating agents and conditions. We examined anterior kidney and spleen mononuclear cells from hybrid striped bass (female striped bass Morone saxatilis × male white bass M. chrysops ) for production of TGF-β messenger RNA (mRNA) in response to administration of the synthetic glucocorticoid triamcinolone. We also compared TGF-β transcription with anterior kidney macrophage bactericidal activity and splenic lymphocyte blastogenesis. Anterior kidney mononuclear cell TGF-β mRNA levels decreased, whereas bactericidal activity increased. Spleen TGF-β mRNA levels did not change significantly, and splenic lymphocyte pokeweed mitogen stimulation index increased in triamcinolone-treated fish. Since triamcinolone is used therapeutically as a suppressive immunomodulator, the enhanced immune functions indicated by the cellular immunoassays were unexpected; however, the inverse response of TGF-β production and macrophage bactericidal activity was consistent with the known relationship between TGF-β and macrophage activation in mammals. Induced immunomodulation in hybrid striped bass was detectable by both traditional cellular immunoassays and the new RT-qcPCR for TGF-β.

Journal of Aquatic Animal Health↗

USGS2001

Evaluation of commercially prepared transport systems for nonlethal detection of Aeromonas salmonicida in salmonid fish

In vitro studies indicated that commercially prepared transport systems containing Amies, Stuart's, and Cary-Blair media worked equally well in sustaining the viability of the fish pathogen Aeromonas salmonicida, which causes furunculosis. The bacterium remained viable without significant increase or decrease in cell numbers for as long as 48 h of incubation at 18-20??C in Stuart's transport medium; consequently, obtaining mucus samples in such tubes were comparable to on-site detection of A. salmonicida by dilution plate counts on Coomassie Brilliant Blue agar. In three different assays of 100 samples of mucus from Atlantic salmon Salmo salar infected subclinically with A. salmonicida, dilution counts conducted on-site proved more reliable for detecting the pathogen than obtaining the samples in the transport system. In the on-site assays, dilution counts detected the pathogen in 34, 41, and 22 samples, whereas this was accomplished in only 15, 15, and 3 of the respective samples when the transport system was used. In an additional experiment, Arctic char Salvelinus alpinus sustaining a frank epizootic of furunculosis were sampled similarly. Here, too, dilution counts were more predictive of the prevalence of A. salmonicida and detected the pathogen in 46 mucus samples; in comparison, only 6 samples collected by using the transport system were positive. We also observed that the transport system supported the growth of the normal mucus bacterial flora. Particularly predominant among these were motile aeromonads and Pseudomonas fluorescens. In studies of mixed culture growth, two representatives of both of the latter genera of bacteria outgrew A. salmonicida - in some cases, to the total exclusion of the pathogen itself.

Journal of Aquatic Animal Health↗

USGS2003

Morphometric and histopathological parameters of gonadal development in adult common carp from contaminated and reference sites in Lake Mead, Nevada

This study examined the hypothesis that exposure to sublethal concentrations of contaminants alters the gonadal condition of feral common carp Cyprinus carpio . Adult common carp in Lake Mead, Nevada, were collected from a contaminated site (Las Vegas Bay) that receives municipal and industrial effluent and from a reference site (Overton Arm) with a relatively low level of contamination. Fish were sampled seven times over a 1-year period extending over two separate spawning seasons. Morphometric and histopathological parameters of gonadal and germ cell development were determined. In males, the pattern of seasonal changes in the gonadosomatic index (GSI) was similar between the sites and showed no clear association with site-specific seasonal temperature profiles. However, Las Vegas Bay males had consistently lower GSI values and, on one of the sampling dates, a lower proportion of sperm relative to other germ cell stages (determined histologically). Further, Las Vegas Bay males had a higher incidence of gonadal macrophage aggregates, which are putative tissue biomarkers of contaminant exposure in fishes. In females, seasonal GSI profiles, the frequency of fish with postovulatory follicles (an index of spawning activity), and the timing of new follicle recruitment all showed differences between sites, but these differences generally matched differences in water temperature profile. Also, the peak size-frequency of full-grown follicles did not differ between sites, and estimates of fecundity for the second spawning season indicated that females from the reference site unexpectedly produced a lower number of gametes. Overall, site differences in gonadal condition were observed in carp of both sexes but they seemed to be associated with site differences in contaminant levels only in males. The apparent lack of association between contaminant level and gonadal condition in female carp from mildly mesotrophic Lake Mead may indicate a lack of contaminant effects in females or a confounding effect of the higher nutrient loads in the Las Vegas Bay environment.

Nevada↗

USGS2011

Capture-related stressors impair immune system function in sablefish

The sablefish Anoplopoma fimbria is a valuable North Pacific Ocean species that, when not targeted in various commercial fisheries, is often a part of discarded bycatch. Predictions of the survival of discarded fish are dependent on understanding how a fish responds to stressful conditions. Our objective was to describe the immunological health of sablefish exposed to capture stressors. In laboratory experiments designed to simulate the capture process, we subjected sablefish to various stressors that might influence survival: towing in a net, hooking, elevated seawater and air temperatures, and air exposure time. After stress was imposed, the in vitro mitogen-stimulated proliferation of sablefish leukocytes was used to evaluate the function of the immune system in an assay we validated for this species. The results demonstrated that regardless of fishing gear type, exposure to elevated seawater temperature, or time in air, the leukocytes from stressed sablefish exhibited significantly diminished proliferative responses to the T-cell mitogen, concanavalin A, or the B-cell mitogen, lipopolysaccharide. There was no difference in the immunological responses associated with seawater or air temperature. The duration and severity of the capture stressors applied in our study were harsh enough to induce significantly elevated levels of plasma cortisol and glucose, but there was no difference in the magnitude of levels among stressor treatments. These data suggest that immunological suppression occurs in sablefish subjected to capture-related stressors. The functional impairment of the immune system after capture presents a potential reason why delayed mortality is possible in discarded sablefish. Further studies are needed to determine whether delayed mortality in discarded sablefish can be caused by increased susceptibility to infectious agents resulting from stressor-mediated immunosuppression.

Transactions of the American Fisheries Society↗

USGS2006

Comparison of methods used to diagnose generalized inflammatory disease in manatees (Trichechus manatus latirostris)

Manatees ( Trichechus manatus latirostris ) are afflicted with inflammatory and infectious disease secondary to human interaction, such as boat strike and entanglement, as well as “cold stress syndrome” and pneumonia. White-blood-cell count and fever, primary indicators of systemic inflammation in most species, are insensitive in diagnosing inflammatory disease in manatees. Acute phase-response proteins, such as haptoglobin and serum amyloid A, have proven to be sensitive measures of inflammation/infection in domestic large animal species. This study assessed diagnosis of generalized inflammatory disease by different methods including total white-blood-cell count, albumin: globulin ratio, gel electrophoresis analysis, C-reactive protein, alpha 1 acid glycoprotein, haptoglobin, fibrinogen, and serum amyloid A. Samples were collected from 71 apparently healthy and 27 diseased animals during diagnostic medical examination. Serum amyloid A, measured by ELISA, followed by albumin:globulin ratio, measured by plasma gel electrophoresis, were most sensitive in diagnosing inflammatory disease, with diagnostic sensitivity and specificity of approximately 90%. The reference interval for serum amyloid A is <10–50 μg/ml with an equivocal interval of 51–70 μg/ml. The reference interval for albumin:globulin ratio by plasma gel electrophoresis is 0.7–1.1. Albumin: globulin ratio, calculated using biochemical techniques, was not accurate due to overestimation of albumin by bromcresol green dye-binding methodology. Albumin:globulin ratio, measured by serum gel electrophoresis, has a low sensitivity of 15% due to the lack of fibrinogen in the sample. Haptoglobin, measured by hemoglobin titration, had a reference interval of 0.4–2.4 mg/ml, a diagnostic sensitivity of 60%, and a diagnostic specificity of 93%. The haptoglobin assay is significantly affected by hemolysis. Fibrinogen, measured by heat precipitation, has a reference interval of 100–400 mg/dl, a diagnostic sensitivity of 40%, and a diagnostic specificity of 95%.

Journal of Zoo and Wildlife Medicine↗

USGS2001

Geographic deaggregation of seismic hazard in the United States

The seismic hazard calculations for the 1996 national seismic hazard maps have been geographically deaggregated to assist in the understanding of the relative contributions of sources. These deaggregations are exhibited as maps with vertical bars whose heights are proportional to the contribution that each geographical cell makes to the ground-motion exceedance hazard. Bar colors correspond to average source magnitudes. We also extend the deaggregation analysis reported in Harmsen et al. (1999) to the western conterminous United States. In contrast to the central and eastern United States (CEUS); the influence of specific faults or characteristic events can be clearly identified. Geographic deaggregation for 0.2-sec and 1.0-sec pseudo spectral acceleration (SA) is performed for 10% probability of exceedance (PE) in 50 yr (475-yr mean return period) and 2% PE in 50 yr (2475-yr mean return period) for four western U.S. cities, Los Angeles, Salt Lake City, San Francisco, and Seattle, and for three central and eastern U.S. cities, Atlanta, Boston, and Saint Louis. In general, as the PE is lowered, the sources of hazard closer to the site dominate. Larger, more distant earthquakes contribute more significantly to hazard for 1.0-sec SA than for 0.2-sec SA. Additional maps of geographically deaggregated seismic hazard are available on the Internet for 120 cities in the conterminous United States (http://geohazards. cr.usgs.gov/eq/) for 1-sec SA and for 0.2-sec SA with a 2% PE in 50 yr. Examination of these maps of hazard contributions enables the investigator to determine the distance and azimuth to predominant sources, and their magnitudes. This information can be used to generate scenario earthquakes and corresponding time histories for seismic design and retrofit. Where fault density is lower than deaggregation cell dimensions, we can identify specific faults that contribute significantly to the seismic hazard at a given site. Detailed fault information enables investigators to include rupture information such as source directivity, radiation pattern, and basin-edge effects into their scenario earthquakes used in engineering analyses.

Bulletin of the Seismological Society of America↗

USGS2011

Fault displacement hazard for strike-slip faults

In this paper we present a methodology, data, and regression equations for calculating the fault rupture hazard at sites near steeply dipping, strike-slip faults. We collected and digitized on-fault and off-fault displacement data for 9 global strikeslip earthquakes ranging from moment magnitude M 6.5 to M 7.6 and supplemented these with displacements from 13 global earthquakes compiled byWesnousky (2008), who considers events up to M 7.9. Displacements on the primary fault fall off at the rupture ends and are often measured in meters, while displacements on secondary (offfault) or distributed faults may measure a few centimeters up to more than a meter and decay with distance from the rupture. Probability of earthquake rupture is less than 15% for cells 200 m??200 m and is less than 2% for 25 m??25 m cells at distances greater than 200mfrom the primary-fault rupture. Therefore, the hazard for off-fault ruptures is much lower than the hazard near the fault. Our data indicate that rupture displacements up to 35cm can be triggered on adjacent faults at distances out to 10kmor more from the primary-fault rupture. An example calculation shows that, for an active fault which has repeated large earthquakes every few hundred years, fault rupture hazard analysis should be an important consideration in the design of structures or lifelines that are located near the principal fault, within about 150 m of well-mapped active faults with a simple trace and within 300 m of faults with poorly defined or complex traces.

Bulletin of the Seismological Society of America↗

USGS2010

Multistate modeling of habitat dynamics: Factors affecting Florida scrub transition probabilities

Many ecosystems are influenced by disturbances that create specific successional states and habitat structures that species need to persist. Estimating transition probabilities between habitat states and modeling the factors that influence such transitions have many applications for investigating and managing disturbance-prone ecosystems. We identify the correspondence between multistate capture-recapture models and Markov models of habitat dynamics. We exploit this correspondence by fitting and comparing competing models of different ecological covariates affecting habitat transition probabilities in Florida scrub and flatwoods, a habitat important to many unique plants and animals. We subdivided a large scrub and flatwoods ecosystem along central Florida's Atlantic coast into 10-ha grid cells, which approximated average territory size of the threatened Florida Scrub-Jay (Aphelocoma coerulescens), a management indicator species. We used 1.0-m resolution aerial imagery for 1994, 1999, and 2004 to classify grid cells into four habitat quality states that were directly related to Florida Scrub-Jay source-sink dynamics and management decision making. Results showed that static site features related to fire propagation (vegetation type, edges) and temporally varying disturbances (fires, mechanical cutting) best explained transition probabilities. Results indicated that much of the scrub and flatwoods ecosystem was resistant to moving from a degraded state to a desired state without mechanical cutting, an expensive restoration tool. We used habitat models parameterized with the estimated transition probabilities to investigate the consequences of alternative management scenarios on future habitat dynamics. We recommend this multistate modeling approach as being broadly applicable for studying ecosystem, land cover, or habitat dynamics. The approach provides maximum-likelihood estimates of transition parameters, including precision measures, and can be used to assess evidence among competing ecological models that describe system dynamics. ?? 2010 by the Ecological Society of America.

Ecology↗