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At least 757 records · Page 42Linked to original sources
USGS1998

Lake Hickory, North Carolina: Analysis of ambient conditions and simulation of hydrodynamics, constituent transport, and water-quality characteristics, 1993-94

From January 1993 through March 1994, circulation patterns and water- quality characteristics in Lake Hickory varied seasonally and were strongly influenced by inflows from Rhodhiss Dam. The upper, riverine portion of Lake Hickory was unstratified during much of the study period. Downstream from the headwaters to Oxford Dam, Lake Hickory thermally stratified during the summer of 1993. During stratification, releases from Rhodhiss Dam plunged beneath the warmer surface waters of Lake Hickory and moved through the reservoir as interflow. During fall and winter, Lake Hickory was characterized by alternating periods of mixing and weak stratification. Water-quality conditions in the headwaters of Lake Hickory were largely driven by conditions in water being released from Rhodhiss Dam. In general, water clarity increased, and concentrations of suspended solids, phosphorus, and summertime chlorophyll a decreased in a downstream direction from the headwaters of Lake Hickory to Oxford Dam. Two chlorophyll a samples from the upper portion of Lake Hickory exceeded the North Carolina water-quality standard of 40 micrograms per liter during the investigation. Downstream from the headwaters, dissolved oxygen was rapidly depleted from Lake Hickory bottom waters beginning in May 1993, and anoxic conditions persisted in the hypolimnion throughout the summer. During summer stratification, concentrations of nitrite plus nitrate, ammonia, and orthophosphate were low in the epilimnion, but concentrations of ammonia near the bottom of the reservoir increased as the hypolimnion became anoxic. Concentrations of fecal coliform bacteria exceeded 200 colonies per 100 milliliters in only one of 60 samples collected from Lake Hickory. In contrast, concentrations of fecal coliform bacteria exceeded 200 colonies per 100 milliliters in 40 percent of samples collected from the Upper Little River, and in 60 percent of samples collected from the Middle Little River, two tributaries to Lake Hickory. Load estimates for the period April 1993 through March 1994 indicated that releases from Rhodhiss Dam accounted for most of the suspended solids, nitrogen, and phosphorus entering the headwaters of Lake Hickory. Loads of nitrogen and phosphorus from point-source discharges were potentially important, but loads of suspended solids from these discharges were insignificant relative to other sources. The CE-QUAL-W2 model was applied to Lake Hickory from the U.S. Highway 321 bridge to Oxford Dam?a distance of 22 kilometers?and was calibrated by using data collected from April 1993 through March 1994. During the simulation period, measured water levels varied a total of 1.14 meters, and water temperatures ranged from 4 to 31 degrees Celsius. The calibrated model provided good agreement between measured and simulated water levels at Oxford Dam. Likewise, simulated water temperatures were generally within 1 degree Celsius of measured values; however, water temperatures were oversimulated for the fall of 1993. Simulated dissolved oxygen concentrations generally agreed with measurements; however, the model tended to oversimulate dissolved oxygen concentrations during the late summer and early fall. There was good agreement between simulated and measured frequency of occurrence of dissolved oxygen concentrations less than 4 milligrams per liter. Simulations of tracer dye releases demonstrated the effects of stratification on dilution and rate of transport in Lake Hickory. Simulations were made of the effects of changes in nutrient loads from inflows and from bottom sediments. A simulated 30-percent reduction in inflow concentrations of orthophosphate, ammonia, and nitrate at the U.S. Highway 321 bridge delayed the initial springtime pulse of algal growth by about 2 weeks, but had little effect on dissolved oxygen concentrations. Likewise, a reduction in the release rate of orthophosphate and ammonia from bottom sediments had very little effect on simulated algae

North Carolina↗
USGS1999

Evaluation of water quality and bulk atmospheric deposition in the Guanella Pass area, Clear Creek and Park Counties, Colorado, water year 1995

A study of water quality and bulk atmospheric deposition in the Guanella Pass area during water year 1995 (October 1994 to September 1995) has provided information to characterize conditions in the South Clear Creek and Geneva Creek Basins about 40 miles west of Denver, Colorado, prior to a possible roadreconstruction project. Analytical results of water samples collected from streams, ground water, and lakes and reservoirs indicate that water in the study area generally contained small concentrations of dissolved solids (low-flow stream sample median, 43 milligrams per liter; ground-water median, 104 milligrams per liter) and suspended sediment (high-flow stream sample median, 115 milligrams per liter). Nutrient, trace-element, and organic-carbon concentrations also were small. Acidic pH and large trace-element concentrations were associated with areas affected by natural acid-sulfate weathering or mining. Increases in particulate nutrients, total recoverable trace elements, and suspended sediment were related to seasonal snowmelt and thunderstorms. Benthic macroinvertebrate and periphyton (algae) samples collected from selected sites in August 1995 indicated large variability in characteristics among sites. Macroinvertebrate density ranged from 6.5 to 1,300 organisms per square meter, and periphyton biovolume ranged from 0.023 to 4,700 x 10 6 cubic microns per square centimeter. The discharge of road runoff from any single drainage feature (ditch or culvert) was small compared to streamflows. Analytical results from samples of road runoff indicated a large range in specific conductance, pH in a neutral range, large values of turbidity, and calcium bicarbonate type water. Sodium or magnesium and chloride, however, were predominant in some samples and were probably related to applications of sodium and magnesium chloride to the roads. Although dissolved nutrients and trace elements were detected in samples of road runoff, particulate forms had the largest concentrations. Suspended-sediment concentrations in road runoff were large, and the sediment was primarily fine grained. Large concentrations of dissolved and total recoverable nutrients, total recoverable trace elements, total organic carbon, and suspended sediment in road runoff could cause increased concentrations in streams, lakes, and reservoirs. Ground-water concentrations of chloride, nitrite plus nitrate, and dissolved iron and manganese·could increase if the large concentrations present in road runoff infiltrate shallow aquifers. Bulk atmospheric deposition was collected at three sites with a paved road surface, five sites with a gravel or dirt surface, and five sites with collectors at least 500 feet away from a road. The median bulk -atmospheric-deposition rate for gravel (or dirt) roads was 106 times the median rate at a reference site (located at least 500 feet away from a road) and 39 times the median rate at a typical paved road site. If a stream, lake, or reservoir is located near the road, bulk-atmospheric- deposition products may settle directly onto open water or be washed in by surface runoff. Because the predominant road-runoff trace-element phase is particulate, potential toxic effects on receiving water may be minimal when compared to aquatic-life standards and regulations in the State of Colorado, which are primarily based on dissolved concentrations. U.S. Environmental Protection Agency primary maximum contaminant levels for drinking water were exceeded for dissolved uranium (proposed) in one ground-water sample.

Colorado↗
USGS1999

Processes affecting dissolved-oxygen concentrations in the lower reaches of Middle Fork and South Fork Beargrass Creek, Jefferson County, Kentucky

This report provides data on dissolved-oxygen (DO) concentrations and identifies the environmental processes that most affect DO concentrations during base-flow periods in the lower reaches of Middle Fork and South Fork Beargrass Creek in Jefferson County, Kentucky. These reaches are affected by inputs from combined-sewer overflows. Sections of the lower reaches of the two streams run through single-family residential areas and public parks that are used extensively by local residents during the summer. Recreational fishing and wading also are common in the Middle Fork reach. Continuous-record data collected during the summer and early fall (July-September 1996 on the Middle Fork and July-October 1995 on the South Fork) at three monitoring sites along each reach indicate generally decreasing DO concentrations in the downstream direction except for the South Fork Beargrass Creek at Winter Avenue site where channel modifications have resulted in higher velocities along with shallower depths during low-flow conditions. The channel modifications at this site increased the reaeration-rate coefficient (a measure of the capacity of the stream to absorb oxygen through the air-water interface), increased the potential for algae to attach to the rough concrete surface, and increased algal exposure to sunlight. Synoptic data available for selected constituent concentrations were used to calibrate and verify a computer model (U.S. Environmental Protection Agency QUAL2E model) capable of simulating processes that affect DO concentrations in streams. The results of the study indicate that streamflow, reaeration, and sediment-oxygen demand (SOD) are the factors that most affect net production and depletion of DO in the lower reaches of Middle Fork and South Fork Beargrass Creek. For the QUAL2E model, streamflow is used in the determination of depth, which in tum is used to estimate the consumption of oxygen by SOD. Streamflow also is used in the determination of the reaeration-rate coefficient. From the QUAL2E simulations, DO concentrations (in the mass balance) attributed to reaeration and SOD were at least an order of magnitude greater than any of the other factors that can affect DO concentrations. Large diurnal variability in DO concentrations resulted at the monitoring sites located at upstream and downstream ends of the Middle Fork and South Fork reaches, but as indicated in model simulation, the net effect of photosynthesis and respiration on DO concentration was small. Nitrogen, ammonia, and carbonaceous biochemical-oxygen demand were present at low concentrations in each of the study reaches; the model results indicate these constituents did not have a substantial effect on DO concentrations. Model simulations indicated that lowering the SOD rate by 50 percent would result in a substantial improvement in DO concentrations in the Middle Fork Beargrass Creek reach for extremely low base-flow conditions but would result in only limited improvement in DO concentrations in the South Fork Beargrass Creek reach. However, no simulations for extremely low base-flow conditions were conducted for the South Fork Beargrass Creek reach. More information on SOD is needed for stream reaches affected by periodic inputs of effluent. In such stream systems, the temporal and spatial variability of SOD needs to be better defined.

Kentucky↗
USGS1999

Ground-water discharge and nitrate loadings to the coastal bays of Maryland

Nitrate in ground water discharged to the Atlantic coastal bays of Maryland enhances the growth of phytoplankton and algae in the bays, which in turn contributes to the process of eutrophication (changes in a body of water as nutrients and sediments accumulate), which is one of the principal environmental problems in the bays. Information on nitrate loading to the bays has been identified as a major data gap by State and Federal resource managers. This report presents results of a study to estimate ground-water discharge and potential nitrate loads to the coastal bays of Maryland, which include Chincoteague, Newport, Sinepuxent, Isle of Wight, and Assawoman Bays. The nitrate load from the discharge of ground water to the coastal bays is dependent on the concentration of nitrate in the water and the volume of ground water being discharged. Data from 388 wells completed in the surficial aquifer that discharges to the bays were used to construct a map of the distribution of nitrate concentration in the ground water. On the basis of those data, and on several simplifying assumptions, the potential nitrate load to the coastal bays from direct discharge of ground water was estimated to be 272,000 pounds of nitrate per year, distributed throughout the 108-square-mile surface area of the bays. Nitrate from ground water can also enter the coastal bays by way of base flow to streams that discharge to the bays. The potential nitrate load to the bays from the base flow of streams was estimated to be 862,000 pounds per year, assuming that the concentration of nitrate in stream base flow is 3.2 milligrams per liter, which is the median concentration of nitrate in ground water in the study area.

Maryland↗
USGS1990

Hydrologic characteristics of the Great Salt Lake, Utah: 1847-1986

The Great Salt Lake in Utah is a large body of water bordered on the west by barren desert and on the east by a major metropolitan area. It is the fourth largest terminal lake in the world, covering about 2,300 square miles in 1986. Since its historic low elevation of 4,191.35 feet in 1963, the lake rose to a new historic high elevation of 4,211.85 feet in 1986. Most of this increase (12.2 feet) occurred after 1982. The rise has caused $285 million of damage to lakeside industries, transportation, farming, and wildlife. Accompanying the rapid rise in lake level has been a decrease in salinity-from 28 percent in 1963 to about 6 percent in 1986. This has resulted in changes in the biota of the lake from obligate halophiles to opportunistic forms, such as blue-green algae and, most recently, a brackish-water fish.

Utah↗
USGS1996

Aquatic biology of the San Joaquin-Tulare basins, California; analysis of available data through 1992

Available data through 1992 on aquatic biota in the San Joaquin-Tulare Basins study unit of the National Water-Quality Assessment Program were analyzed to provide a conceptual framework to guide study design. The analysis included information on the biology of fish, aquatic macroinvertebrates, aquatic algae, and concentrations of trace elements and organic pesticides in aquatic biota.

Water Supply Paper↗
USGS2019

Controls on organic matter distributions in Eocene Lake Uinta, Utah and Colorado

The Green River Formation deposited in Eocene Lake Uinta in the Uinta and Piceance Basins, Utah and Colorado, contains the largest oil shale resource in the world with an estimated 1.53 trillion barrels of oil in-place in the Piceance Basin and 1.32 trillion barrels in the Uinta Basin. The Douglas Creek arch, a slowly subsiding hinge-line between the two basins, created separate deep depocenters with shallow water conditions near the crest of the arch. Lake Uinta was a saline lake throughout its history with a lower saline to hypersaline layer (monimolimnion) and an upper less saline layer (mixolimnion). Most of the organic matter in the Green River Formation was derived primarily from algae that lived in the photic zone of the lake and is very hydrogen-rich and oil-prone. In many modern large and deep lakes, rates of organic matter production are highly variable due to differences in nutrient supply. However, cyclonic circulation often leads to winnowing out organic and mineral matter in the mixolimnion leading to organic and fine-grained mineral matter being deposited in increasing amounts toward hydro-dynamically dead zones in the center of the circulation producing concentric bands of increasing organic matter content. Organic matter transport through the dense, hypersaline monimolimnion may have been facilitated by low density organic matter attaching to more dense clay mineral particles. Most of the oil shale intervals deposited in Lake Uinta display similar patterns in their organic matter distributions, increasing in very regular fashion toward the central areas of the lake’s two depocenters. This concentric feature is particularly prominent in the most laminated oil shale zones. Here, we propose that cyclonic circulation was present in Lake Uinta. Each basin appears to have had its own circulation currents, separated by shallow water conditions near the Douglas Creek arch, as well as one hydro-dynamically dead zone. Sediment gravity flow processes were also very active in some strata of Lake Uinta, leading to the reworking and redepositing of sediments. Two general types of sediment gravity flows are recognized: (1) organic-rich sediment gravity flows that reworked and may have concentrated organic-rich material closer to the two deep depocenters, and (2) sandstone and siltstone-rich organic-poor mass movement deposits that originated on marginal shelves. Mass movements could have been triggered by various natural processes and/or possibly by the movement of dense brines that evolved on marginal shelves and moved along the bottom of the water column toward the deep part of the lake. The uppermost, poorly consolidated sediment layer was incorporated in sediment gravity flows as they moved, and in many cases sediment gravity flows scoured down significantly into the more consolidated underlying sediment producing large rip-up clasts of laminated sediments. Truncation of more than 100 ft occurs at the base of a sequence of sediment gravity flows in one well, indicating a significant incised channel. Coarser-grained sediment gravity flows terminated before reaching the lake’s deepest areas, forming thick concentric buildups of organically-lean sediment near the base of the marginal slopes. Intervals dominated by organic-rich fine-grained sediment gravity flows have tightly concentric bands of increasing organic matter toward the deepest parts of the lake and can be organically richer than the richest laminated intervals. There is some evidence that the hydro-dynamically quiet zones did not always correspond closely to the deepest areas of the lake, extending in some cases into shallower areas.

Colorado, Utah↗
USGS2016

Effects of Coralliophila violacea on tissue loss in the scleractinian corals Porites spp. depend on host response

We investigated interactions between the corallivorous gastropod Coralliophila violacea and its preferred hosts Porites spp. Our objectives were to experimentally determine whether tissue loss could progress in Porites during or after Coralliophila predation on corals with and without tissue loss and to histologically document snail predation. In 64% of feeding scars, tissue regenerated within 3 wk, leaving no trace of predation. However, in roughly 28% of scars, lesions progressed to subacute tissue loss resembling white syndrome. In feeding experiments, scars from snails previously fed diseased tissue developed progressive tissue loss twice as frequently as scars from snails previously fed healthy tissue. Scars from previously healthy-fed snails were 3 times as likely to heal as those from previously diseased-fed snails. Histology revealed marked differences in host responses to snails; P. cylindrica manifested a robust inflammatory response with fewer secondary colonizing organisms such as algae, sponges, and helminths, whereas P. rus showed no evident inflammation and more secondary colonization. We conclude that lesion progression associated with Coralliophila may be associated with secondary colonization of coral tissues damaged by predator-induced trauma and necrosis. Importantly, variation at the cellular level should be considered when explaining interspecific differences in host responses in corals impacted by phenomena such as predation.

Diseases of Aquatic Organisms↗
USGS2024

Stable isotopes reveal that foraging strategy dictates trophic response of salt marsh residents to black mangrove Avicennia germinans range expansion

Climate warming has facilitated the expansion of black mangrove Avicennia germinans (hereafter ‘ Avicennia ’) into smooth cordgrass Spartina alterniflora (hereafter ‘ Spartina ’) salt marshes in southeastern Louisiana (USA). As macrophytes contribute to soil organic matter (SOM) and primary production, this transition could alter the basal energy pathways supporting salt marsh food webs. We used bulk-tissue and compound-specific stable isotope analyses (SIA) to determine if changes in dominant macrophytes alter basal energy pathways for 2 salt marsh residents: grass shrimp ( Palaemonetes spp.) and marsh periwinkle snails Littoraria irrorata . Specifically, we used Bayesian stable isotope mixing models to quantify the relative contribution of basal energy sources to SOM and resident food webs across a Spartina - Avicennia gradient in southeastern Louisiana. We found that sources of SOM changed in Avicennia -dominated habitat and that foraging strategy dictated trophic responses of salt marsh residents to Avicennia expansion. Marsh periwinkle snail basal energy sources shifted from Spartina to algae (phytoplankton and epiphytic macroalgae) reliance, while grass shrimp basal energy sources remained reliant on algal production, regardless of macrophyte dominance. Compound-specific SIA improved basal energy source distinctions and provided more constrained estimates of their contributions to resident food webs than bulk-tissue SIA. The importance of algal energy across the landscape warrants future investigations into the ability of Avicennia to support the diversity and abundance of algal energy sources present in Louisiana salt marshes. Understanding coastal wetland food web dynamics could help with planning and evaluating the most effective coastal restoration techniques (e.g. prioritizing salt marsh or mangrove habitat) in southeastern Louisiana.

Marine Ecology Progress Series↗
USGS2025

Detection of the Diadema antillarum scuticociliatosis Philaster clade on sympatric metazoa, plankton, and abiotic surfaces and assessment for its potential reemergence

A ciliate belonging to the Diadema antillarum scuticociliatosis (DaSc)-associated Philaster clade (DaScPc) caused catastrophic long-spined urchin mass mortality in spring and summer of 2022. The ciliate can be grown in culture in both the presence and absence of D. antillarum tissues, suggesting that it may persist outside its host by consuming microorganisms or dissolved organic nutrients. We hypothesized that DaScPc was present outside its host during and after mass mortality and absent prior to 2022. We examined DaScPc in DNA extracted from 500 swabs of sym- patric metazoa and abiotic surfaces, and plankton samples, collected at 35 sites in the Caribbean in 2022 and 2023. DaScPc was detected on corals, turf algae, and a sponge, predominantly at sites with active or prior DaSc. We examined whether it was present prior to 2022 by surveying extracted DNA from Caribbean corals and water collected near corals by PCR and by mining publicly available transcriptomes and metagenomes for DaScPc rRNAs. These efforts yielded no DaScPc genes. We further hypothesized that DaScPc may recruit to the specific corals detected in field surveys, and that these may then infect naïve hosts. A mesocosm experiment to test DaScPc recruitment suggested that, while it recruited to corals, it did so inconsistently between coral species. Incubation of corals that recruited DaScPc with naïve urchins yielded inconclusive results since urchins died without characteristic DaSc signs. Overall, our results suggest that DaScPc may occur outside its urchin host, and that it may have been absent in the region prior to 2022.

Florida↗
USGS2000

Dynamics of nutrient cycling and related benthic nutrient and oxygen fluxes during a spring phytoplankton bloom in South San Francisco Bay (USA)

Benthic oxygen uptake and nutrient releases of N, P and Si were measured weekly at 2 sites in South San Francisco Bay around the 1996 spring bloom. Exchanges across the sediment-water interface were estimated from whole core incubations performed in the laboratory at in situ temperature and in dark. Fluxes changed significantly on a weekly time scale. Over a period of 15 wk the fluxes of dissolved inorganic N, P and Si ranged from -40 to +200, 0 to 13 and from 30 to 400 µmol m -2 h -1 respectively. Sediment oxygen demand increased from 10 before to 64 mg O 2 m -2 h -1 just after the bloom period. During the bloom, nutrient fluxes represented about 20, 16 and 9% of the Si, P and N requirements for primary production. Before and after the bloom period, Si fluxes contributed up to 30 and >100% of this requirement and P and N fluxes up to 15 and 50% respectively. Simple empirical models explain most of the spatial-temporal variability of benthic fluxes of Si, P and NH 4 (but not NO 3 ) from 3 predictor variables: sediment porosity, nutrient concentration in bottom waters and chlorophyll content of surficial sediments. These models show that algal blooms influence benthic-pelagic nutrient exchange through 2 processes: (1) depletion of nutrients from the water column (which enhances gradient-driven transports across the sediment-water interface) and (2) sedimentation of labile phytodetritus (which promotes remineralization in or on the surficial sediments). Rates and patterns of nutrient cycling were very different at the shallow and deep study sites, illustrating the challenge of extrapolating measurements of coupled algae-nutrient dynamics to whole ecosystems.

Marine Ecology Progress Series↗
USGS2004

Effects of marine reserves and urchin disease on southern Californian rocky reef communities

While the species level effects of marine reserves are widely recognized, community level shifts due to marine reserves have only recently been documented. Protection from fishing of top predators may lead to trophic cascades, which have community-wide implications. Disease may act in a similar manner, regulating population levels of dominant species within a community. Two decades of data from the Channel Islands National Park Service's Kelp Forest Monitoring database allowed us to compare the effects of fishing and urchin disease on rocky reef community patterns and dynamics. Different size-frequency distributions of urchins inside and outside of reserves indicated reduced predation on urchins at sites where fishing removes urchin predators. Rocky reefs inside reserves were more likely to support kelp forests than were fished areas. We suggest that this results from cascading effects of the fishery on urchin predators outside the reserves, which releases herbivores (urchins) from predation. After periods of prevalent urchin disease, the reef community shifted more towards kelp forest assemblages. Specific groups of algae and invertebrates were associated with kelp forest and barrens communities. The community dynamics leading to transitions between kelp forests and barrens are driven by both fishing and disease; however the fishery effect was of greater magnitude. This study further confirms the importance of marine reserves not only for fisheries conservation, but also for the conservation of historically dominant community types.

Marine Ecology Progress Series↗
USGS2006

Permanent 'phase shifts' or reversible declines in coral cover? Lack of recovery of two coral reefs in St. John, U.S. Virgin Islands

Caribbean coral reefs have changed dramatically in the last 3 to 4 decades, with significant loss of coral cover and increases in algae. Here we present trends in benthic cover from 1989 to 2003 at 2 reefs (Lameshur Reef and Newfound Reef) off St. John, US Virgin Islands (USVI). Coral cover has declined in the fore-reef zones at both sites, and no recovery is evident. At Lameshur Reef, Hurricane Hugo (1989) caused significant physical damage and loss of coral. We suggest that macroalgae rapidly colonized new substrate made available by this storm and have hindered or prevented growth of adult corals, as well as settlement and survival of new coral recruits. Overfishing of herbivorous fishes in the USVI and loss of shelter for these fishes because of major storms has presumably reduced the levels of herbivory that formerly controlled algal abundance. Coral cover declined at Newfound Reef from 1999 to 2000, most likely because of coral diseases. The trends that we have documented, loss of coral followed by no evidence of recovery, appear similar to findings from other studies in the Caribbean. We need to focus on functional shifts in the resilience of coral reefs that result in their inability to recover from natural and human-caused stressors.

U.S. Virgin Islands↗
USGS2006

Catastrophe, recovery and range limitation in NE Pacific kelp forests: a large-scale perspective

The 1997–98 El Niño was one of the strongest on record and resulted in widespread losses of the giant kelp Macrocystis pyrifera (Agardh) along the west coast of North America. Drawing on a rich history of studies that have shown abnormally large waves and warm nutrient-poor water associated with El Niños to negatively impact giant kelp populations at some locations in southern and Baja California, we examined (1) how these impacts scale up when considered across the species’ geographic range in the NE Pacific Ocean and (2) if these impacts are generalizable over broad spatial scales. Working at 56 sites in 14 study locations over a 3 yr period (1997 to 2000), we examined how giant kelp populations were impacted by and recovered following the 1997–98 El Niño over a ~1500 km span along the west coast of North America. Our results indicate that while nearly all giant kelp disappeared from the southern one-third of the species’ range along the coast of Baja California, Mexico, and heavy losses occurred throughout the central one-third of the species’ range in southern California, USA, only minor impacts were observed throughout the northern one-third of the species’ range in central California. Further, although highly variable among regions, these impacts were similar and generalizable among locations within each region. Our results also suggest that, as has been observed in local-scale studies, this large-scale variability in giant kelp mortality was driven by large-scale patterns in ocean temperature (nutrient concentration) and wave intensity. Recovery following El Niño, in contrast, was variable at multiple spatial scales and although not directly tested here, presumably influenced by numerous factors such as proximity to upwelling areas, competition with other algae, grazing, and propagule availability. Further, variability in the rates of recovery among locations resulted in a generally slow recovery of giant kelp throughout most of Baja California, and residual large-scale impacts of the El Niño were still evident 2 yr after the El Niño ended. As global climate change may lead to increases in the frequency and intensity of El Niños, our findings have broad implications for the ways in which ecosystems might be expected to respond to them and provide a measure by which their impacts to giant kelp ecosystems may be compared among events.

Pacific Ocean↗
USGS2019

Interactions of microhabitat and time control grassland bacterial and fungal composition

Dryland grasslands are vast and globally important and, as in all terrestrial ecosystems, soil microbial communities play fundamental roles in regulating dryland ecosystem function. A typical characteristic of drylands is the spatial mosaic of vascular plant cover surrounded by interspace soils, where biological soil crusts (biocrusts)—a complex community of organisms including bacteria, fungi, algae, mosses, and lichens—are common. The implications of this heterogeneity, where plants and biocrust cover co-occur, are often explored in the context of soil fertility and hydrology, but rarely has the impact of these multiple microhabitat types been simultaneously explored to determine the influence on bacterial and fungal communities, key biological players in these ecosystems. Further, our understanding of the temporal dynamics of bacterial and fungal communities in grasslands, and of how these dynamics depend on the microhabitat within the ecosystem, is notably poor. Here we used a temporally and spatially explicit approach to assess bacterial and fungal communities in a grassland on the Colorado Plateau, and to link variation in these communities to edaphic characteristics. We found that microhabitat (e.g., vascular plant rhizosphere, biocrust, and below biocrust) was the strongest driver of differences in bacterial and fungal community richness, diversity, and composition. Microhabitat type also significantly mediated the impact of temporal change in shaping community composition. Taken together, 29% of the variation in bacterial community composition could be explained by microhabitat, date, and microhabitat-by-date interactions, while only 11% of the variation in fungal community composition could be explained by the same factors, suggesting important differences in community assembly processes. Soil microbial communities dictate myriad critical ecosystem functions, thus understanding the factors that control their compostition is crucial to considering and forecasting how terrestrial ecosystems work. Overall, this case study provides insights for future studies on the spatial and temporal dynamics of bacterial and fungal communities in dryland grasslands.

Frontiers in Ecology and Evolution↗
USGS2023

A comprehensive multi-state conditional occupancy model for evaluating interactions of non-native and native species

A major challenge in ecology is disentangling interactions of non-native, potentially invasive species on native species. Conditional two-species occupancy models examine the effects of dominant species (e.g., non-native) on subordinate species (e.g., native) while considering the possibility that occupancy of one species may affect occupancy and/ or detection of the other. Although conditional two-species models are useful for evaluating the influence of one species on presence of another, it is possible that species interactions are density dependent. Therefore, we developed a novel two-species occupancy model that incorporates multiple abundance states (i.e., absent, present, abundant) of the native species. We showcase the utility of this model with a case study that incorporates random effects and covariates on both occupancy and detection to help disentangle species interactions given varying occupancy and detection in different abundance states. We use snorkel survey data from the Umpqua basin, Oregon, where it is hypothesized that smallmouth bass Micropterus dolomieu , a non-native piscivore, exclude Umpqua chub Oregonichthys kalawatseti , a small endemic minnow. From our two-species multi-state (2SMS) model, we concluded that average occupancy was low for both fishes, and that when non-native bass were present, overall native chub occupancy in the present (0.18 ± 0.05 SD) and abundant (0.19 ± 0.03) states was higher than when non-natives were absent (0.14 ± 0.02/ 0.08 ± 0.02), indicating the non-native was not excluding the native species. By incorporating a species interaction factor, we found a positive association (6.75 ± 5.54 SD) between native chub and non-native bass. The covariates strongly related to occupancy were elevation, algae, and land cover type (urban and shrub). Detection probability for both species (0.21–0.82) was most strongly related to the covariates day of year, water temperature, gravel substrate, and stream order/ magnitude. Incorporation of detection probability and covariates enabled interpretation of interactions between the two species that may have been missed without their inclusion in the modeling process. Our new 2SMS occupancy model can be used by scientists and managers with a broad range of survey and covariate data to disentangle species interactions problems to help them inform management decisions.

Frontiers in Ecology and Evolution↗
USGS2023

Nearshore subtidal community response during and after sediment disturbance associated with dam removal

Dam removal is used increasingly to restore aquatic ecosystems and remove unnecessary or high-risk infrastructure. As the number of removals increases, there is a growing understanding about the hydrologic, geomorphic, and ecological responses to these removals. Most dam removal studies, however, focus on river and watershed responses to dam removal. The removal of two dams on the Elwha River provided a unique opportunity to characterize the response of nearshore (coastal) ecosystems. We conducted SCUBA surveys between 2011 and 2022 to quantify trajectories of change in a nearshore ecosystem during and after dam removal. We focused on the degree to which the abundances of kelp, benthic invertebrates, and fish changed in response to patterns of sediment fluxes during and after dam removal. Our findings point to two pathways of response depending on the disturbance mechanism and species type. Sites with persistent sediment deposition were characterized by wholesale community changes that did not recover to a before dam removal condition. Instead, the sites were colonized by new species that were largely absent prior to dam removal. Sites that experienced high turbidity but lacked persistent seafloor deposition were primarily characterized by a reduction in the abundance of kelp and other algae during dam removal and a rapid recovery after sediment flux to the nearshore declined. Dam removal influences on invertebrates and fish at these sites were more variable, benefiting some species and disadvantaging others. In addition to dam removal, sea star wasting syndrome and a marine heatwave exerted distinct controls on subtidal communities during the same period. The loss of the predatory sea star Pycnopodia helianthoides was associated with gains in some of its prey species, and kelp community changes reflected regional trends in ocean temperature and kelp abundance. The results presented here have important implications for understanding the response of marine ecosystems to future dam removals and similar sediment perturbation events.

Washington↗
USGS2021

Changes in rocky intertidal community structure during a marine heatwave in the northern Gulf of Alaska

Marine heatwaves are global phenomena that can have major impacts on the structure and function of coastal ecosystems. By mid-2014, the Pacific Marine Heatwave (PMH) was evident in intertidal waters of the northern Gulf of Alaska and persisted for multiple years. While offshore marine ecosystems are known to respond to these warmer waters, the response of rocky intertidal ecosystems to this warming is unclear. Intertidal communities link terrestrial and marine ecosystems and their resources are important to marine and terrestrial predators and to human communities for food and recreation, while simultaneously supporting a growing coastal tourism industry. Given that current climate change projections suggest increased frequency and duration of marine heatwaves, monitoring and understanding the impacts of heatwaves on intertidal habitats is important. As part of the Gulf Watch Alaska Long-Term Monitoring program, we examined rocky intertidal community structure at 21 sites across four regions spanning 1,200 km of coastline: Western Prince William Sound, Kenai Fjords National Park, Kachemak Bay, and Katmai National Park and Preserve. Sites were monitored annually from 2012 to 2019 at mid and low tidal strata. Before-PMH (2012–2014), community structure differed among regions. We found macroalgal foundation species declined during this period mirroring patterns observed elsewhere for subtidal habitat formers during heatwave events. The region-wide shift from an autotroph-macroalgal dominated rocky intertidal to a heterotroph-filter-feeder dominated state concurrent with the changing environmental conditions associated with a marine heatwave event suggests the PMH had Gulf-wide impacts to the structure of rocky intertidal communities. During/after-PMH (2015–2019), similarities in community structure increased across regions, leading to a greater homogenization of these communities, due to declines in macroalgal cover, driven mostly by a decline in the rockweed, Fucus distichus , and other fleshy red algae in 2015, followed by an increase in barnacle cover in 2016, and an increase in mussel cover in 2017. Strong, large-scale oceanographic events, like the PMH, may override local drivers to similarly influence patterns of intertidal community structure.

Alaska↗