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At least 739 records · Page 41Linked to original sources

Agkistrodon piscivorus conanti (Florida cottonmouth) Diet

Agkistrodon piscivorus is a generalist predator that feeds on a variety of prey, including snakes (Gloyd and Conant 1990. Snakes of the Agkistrodon Complex: A Monographic Review. Society for the Study of Amphibians and Reptiles, Oxford, Ohio. 614 pp.; Lillywhite et al. 2002. Herpetol. Rev. 33:259–260; Hill and Beaupre 2008. Copeia 2008:105–114). Cemophora coccinea (Scarletsnake) is not known as one of the 26 species of snakes consumed by A. piscivorus (Ernst and Ernst 2011. Venomous Reptiles of the United States, Canada, and Northern Mexico: Volume 1. Johns Hopkins University Press, Baltimore, Maryland. 193 pp.). On 16 June 2015, at 2210 h, we found a dead-on-road A. piscivorus (total length [TL] = 51.0 cm) in Everglades National Park on Main Park Road, 1.88 km S Pa-hay-okee, Miami-Dade Co., Florida, USA (25.414085°N, 80.78183146°W, WGS84; elev. 3 m). The snake had been killed by a vehicle and some internal organs were exposed. Visible stomach contents included a small (TL ca. 15 cm) C. coccinea. Photographic vouchers of the A. piscivorus (UF-Herpetology 177194) and C. coccinea (UF-Herpetology 177195) were deposited in the Division of Herpetology, Florida Museum of Natural History, University of Florida. Despite the fact that these species are sympatric over large areas of the southeastern United States, this is the first known documented predation of C. coccinea by A. piscivorus.

Herpetological Review↗

Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated

During the winter of 2006-07, we radio and passive integrated transponder (PIT) tagged, and released 99 juvenile fall Chinook salmon to evaluate over-wintering behavior and dam passage in the lower Snake River, Washington. All fish were released 10 km upstream of Lower Granite Dam at Granite Point in early November, 2006. Fixed radio telemetry detection sites located in the forebay and tailrace areas of Lower Granite, Little Goose, Lower Monumental, Ice Harbor, Bonneville dams, and at Lyle, Washington were used to monitor fish movements and dam passage through early-May 2007. Of the 99 fish released during our study, 80 passed Lower Granite Dam and were detected at downstream detection sites, 37 passed Little Goose Dam, 41 passed Lower Monumental Dam, 31 passed Ice Harbor Dam, 18 passed Lyle, WA, and 13 passed Bonneville Dam. Of the fish that passed Lower Granite Dam in the fall, 63 fish did so during the extended bypass period from November 1 through December 16. Of these fish, 53 were also detected by the PIT-tag interrogation system. Fifteen of the fish that passed Lower Granite Dam in the fall continued to pass lower Snake River dams and exit the system by the end of January. The remaining fish either died, their tags failed, or they resided in Little Goose Reservoir until spring when relatively few continued their seaward migration. Passage of tagged fish past lower Snake River dams generally declined during the winter as temperatures decreased, but increased again in the spring as temperatures and flows increased. Fish residence times in reservoirs and forebays was lengthy during the winter (up to 160 d), and varied by reservoir and time of year. We observed no diel trends in fish passage. Very few fish were detected at PIT-tag interrogation sites in the spring compared to detection by radio telemetry detection sites indicating that fish may have passed via spill. We believe that passage of overwintering juvenile fall Chinook salmon during winter is due more to chance than directed downstream movement. Since the primary route of passage during the winter is through powerhouse turbines, the potential exists for increased mortality for over-wintering juvenile fall Chinook salmon in the Snake River. Our findings that some fish can pass undetected during the winter likely bias traditional smolt-to-adult return rate calculations that are typically used to measure the success of juvenile transportation studies.

Washington↗

Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated. 2006 Annual Report

During the winter of 2005-06, we radio and PIT tagged and released 48 juvenile fall Chinook salmon to evaluate over-wintering behavior and dam passage in the lower Snake River, Washington. Fish were released at the upstream end of the Lower Granite Dam forebay in November and December 2005. Fixed radio telemetry detection sites located in forebay and tailrace areas of Lower Granite, Little Goose, Lower Monumental and Ice Harbor dams were used to monitor fish movements and dam passage through early-May 2006. Of the 48 fish released during our study, 39 (81 %) passed Lower Granite Dam and were detected at downstream detection sites, 29 (60%) passed Little Goose Dam, 25 (52%) passed Lower Monumental Dam, and 15 (31%) passed Ice Harbor Dam. Thirty-seven (95%), 23 (79%), 16 (64%), and 9 (60%) of the fish that passed Lower Granite, Little Goose, Lower Monumental, and Ice Harbor dams respectively, did so when the fish bypass system was not operated. Passage of tagged fish past lower Snake River dams generally declined during the winter, but increased again after bypass began in April. Fish residence times in reservoirs and forebays was lengthy during the winter (up to 118 d), and varied by reservoir and time of year. We observed no diel passage trends. Only 15 of the 48 fish were subsequently detected at a PIT-tag interrogation site the following spring. We believe that passage of overwintering juvenile fall Chinook salmon during winter is due more to chance than directed downstream movement. Since the primary route of passage during the winter is through powerhouse turbines, the potential exists for increased mortality for over-wintering juvenile fall Chinook salmon in the Snake River. Our findings also have implications for transportation studies of subyearling fall Chinook salmon in the Snake River. Specifically, the finding that some fish can pass undetected during the winter may bias smolt-to-adult return rate calculations that are typically used to measure the success of the aforementioned management actions.

Washington↗

Assessment of smolt condition for travel time analysis. Annual report 1989

The Water Budget is a volume of water used to enhance environmental conditions (flows) in the Columbia and Snake rivers for juvenile salmonids during their seaward migration. To manage the Water Budget, the Fish Passage Center estimates travel times of juvenile salmonids in index reaches of the main-stem rivers, using information on river flows and the migrational characteristics of the juvenile salmonids. This study was initiated to provide physiological information on the juvenile salmonids used for these travel time estimates. The physiological ability to respond to stressors was evaluated by measuring concentrations of plasma cortisol, glucose, and chlorides before and after a 30-s handling-stress challenge test. As in 1988, most groups responded satisfactorily to the challenge. The scope for response was compromised among two groups of juvenile chinook salmon that were trucked to release sites and in steelhead from one hatchery after unusual marking and transportation protocols were used. The development of smoltification was assessed by measuring gill Na+-K+ ATPase activity and plasma thyroxine concentrations. Mean ATPase activities of marked hatchery groups of juvenile chinook salmon and steelhead changed little during the month before release and rose sharply for about the first 20 d of the migration after release. Mean plasma thyroxine was highest during the first 20 d after release. Mean gill ATPase activity of spring chinook salmon from the migration-at-large peaked at about the 90th percentile of passage at Rock Island and Lower Granite dams, and at about the 50th percentile of passage at McNary Dam. Mean gill ATPase activity of wild steelhead was higher than gill ATPase activity of hatchery steelhead at Rock Island Dam, the Snake River Trap, and Lower Granite Dam, but not at McNary Dam. This was attributed to a time-dependent relationship between increases in ATPase activity and the number of days fish migrated before recapture. Correlations of gill ATPase activity and/or plasma thyroxine concentrations with condition factor, morphology, or skin guanine concentration may be useful as non-lethal indicators of smoltification for inclusion in a smoltification index. Prevalence of bacterial kidney disease in spring chinook salmon was generally higher than in 1988, ranging from 81-100% using an enzyme-linked immunosorbent assay (ELISA) method. Fish from Snake River hatcheries had more severe infections than those from mid-Columbia hatcheries. The percentage of fish with severe infections was lower at two downstream dams than at the Snake River hatcheries of origin, suggesting a bias in dam collection facilities or that these fish ceased to migrate, either of which could lead to biases in travel time estimates.

Report↗

Coluber (= Masticophis) flagellum piceus (Red Racer). Arboreal/nocturnal behavior

Many species of snakes display arboreal behavior and are often found in vegetation many meters above ground. Mojave Desert snake species rarely get very far above the ground surface and are perhaps limited by predominantly low growing vegetation. Coluber flagellum piceus is considered strictly diurnal and although may ascend vegetation while active, is thought to retreat to subterranean refugia at night. Werler and Dixon (2000. Texas Snakes: Identification, Distribution, and Natural History. University of Texas Press, Austin. 437 pp.) stated “The western coachwhip is active above ground only during daylight hours. It almost invariably retires to depths of an animal burrow before sundown, where it spends the night.” The normal morning activity period for C. flagellum appears to be from approximately 0700–1000 h from June through September (Jones and Whitford 1989. Southwest. Nat. 34:460–467). Secor and Nagy (1994. Ecology 75:1600–1614), and Secor (1995. Herpetol. Monogr. 9:169–186) determined that the average body temperature for active above ground activity of C. flagellum was (33.1°C + 0.1°C, range of 24.0°C–40.8°C, N = 502), stating that coachwhip snakes were seldom active on the surface with body temperatures below 28°C. Here, I report a C. f. piceus that apparently spent the night draped in a Creosote Bush ( Larrea tridentata ).

Nevada↗

Factors influencing the use of water-filled tree cavities by eastern ratsnakes (Pantherophis alleghaniensis)

For some animals, specific microhabitats may be particularly important for certain behaviors and/or age or sex classes. Here we explore the use of previously unrecognized retreat sites (water-filled tree cavities) by Eastern Ratsnakes ( Pantherophis alleghaniensis ). During 4 y of radio telemetry, approximately half of the 45 ratsnakes monitored used water-filled cavities. Typically, water-filled cavities (phytotelmata) were in live Laurel Oaks ( Quercus laurifolia ) and Black Cherry ( Prunus serotina ) where limbs had broken off, internal wood had rotted, and water accumulated. Water-filled cavities were used by ratsnakes at about the same frequency as tree stumps but less frequently than snags, brushpiles, or downed logs. Snakes remained in water-filled cavities for an average of 10 d compared to only 2–4 d in other structures. Reproductive females (both pre- and post-egg laying) were four times more likely to use water-filled cavities than non-gravid or male ratsnakes, suggesting cavities are used to offset water loss associated with gestation. Ratsnakes used water-filled cavities far more in summer than spring even though thermal profiles of cavities were similar to those of other retreat structures, indicating their use was not for thermoregulation. Multiple snakes often used cavities simultaneously, suggesting that cavities are either limited or facilitate social interaction. Snakes did not use artificial water-filled cavities, suggesting that natural sites may provide snakes with some unknown benefit beyond hydration. Water-filled cavities appear to be important for ratsnakes, particularly reproductive females, and warrant further investigation.

South Carolina↗

Predation thresholds for reintroduction of native avifauna following suppression of invasive brown treesnakes on Guam

The brown treesnake (BTS) ( Boiga irregularis ) invasion on Guåhan (in English, Guam) led to the extirpation of nearly all native forest birds. In recent years, methods have been developed to reduce BTS abundance on a landscape scale. To help assess the prospects for the successful reintroduction of native birds to Guåhan following BTS suppression, we modeled bird population persistence based on their life history characteristics and relative sensitivity to BTS predation. We constructed individual-based models and simulated BTS predation in hypothetical founding populations for each of seven candidate bird species. We represented BTS predation risk in two steps: risk of being encountered and risk of mortality if encountered. We link encounter risk from the bird's perspective to snake contact rates at camera traps with live animal lures, the most direct practical means of estimating BTS predation risk. Our simulations support the well-documented fact that Guåhan's birds cannot persist with an uncontrolled population of BTS but do indicate that bird persistence in Guåhan's forests is possible with suppression short of total eradication. We estimate threshold BTS contact rates would need to be below 0.0002–0.0006 snake contacts per bird per night for these birds to persist on the landscape, which translates to an annual encounter probability of 0.07–0.20. We simulated the effects of snake-proof nest boxes for Sihek ( Todiramphus cinnamominus ) and Såli ( Aplonis opaca ), but the benefits were small relative to the overall variation in contact rate thresholds among species. This variation among focal bird species in sustainable predation levels can be used to prioritize species for reintroduction in a BTS-suppressed landscape, but variation among these species is narrow relative to the required reduction from current BTS levels, which may be four orders of magnitude higher (>0.18). Our modeling indicates that the required predation thresholds may need to be lower than have yet been demonstrated with current BTS management. Our predation threshold metric provides an important management tool to help estimate target BTS suppression levels that can be used to determine when bird reintroduction campaigns might begin and serves as a model for other systems to match predator control with reintroduction efforts.

Ecological Applications↗

Integrating growth and capture–mark–recapture models reveals size‐dependent survival in an elusive species

Survival is a key vital rate for projecting the viability of wild populations. Estimating survival is difficult for many rare or elusive species because recapture rates of marked individuals are low, and the ultimate fate of individuals is unknown. Low recapture rates for many species have made it difficult to accurately estimate survival, and to evaluate the importance of individual and environmental covariates for survival. Individual covariates such as size are particularly difficult to include in capture–mark–recapture models for elusive species because the state of the individual is unknown during periods when it is not captured. Here, we integrate a von Bertalanffy growth model with a multi‐state robust‐design Cormack‐Jolly‐Seber model to test for a relationship between body size and survival in the elusive, threatened giant gartersnake, Thamnophis gigas . We take a Bayesian approach to model the size of an individual during periods when it was not captured and measured, which fully propagates uncertainty in this unobserved covariate. We found strong support for a positive relationship between snake size and annual survival, with survival increasing with size up to a peak for adult snakes, after which survival either declines slightly or plateaus for the largest individuals. Few captures of very small and very large individuals led to high uncertainty in the survival rates of these sizes. Survival of giant gartersnakes was also positively related to the amount of precipitation and the cover of emergent and floating vegetation at a site. To our knowledge, our study is the first to estimate a size–survival relationship in a snake while fully accounting for uncertainty in the size of unobserved individuals. Our results have implications for the management of this threatened species and illustrate the utility of integrating hierarchical Bayesian models to the study of survival in elusive species.

California↗

Movement dynamics of Smallmouth Bass in a large western river system

The Snake River, Idaho, between Swan Falls and Brownlee dams supports a popular fishery for Smallmouth Bass Micropterus dolomieu . Recently, anglers have expressed concern about harvest of Smallmouth Bass associated with seasonal congregations in and near the lower reaches of several major tributaries. Little is known about Smallmouth Bass movement in the system, and a better understanding of movement dynamics will help to guide future management. From March to August 2016, Smallmouth Bass (≥260 mm; n = 1,131) were tagged with T-bar anchor tags to evaluate large-scale movement patterns. Movement was estimated from 63 angler-reported tags for which area descriptions provided sufficient detail to assign a recapture location. Extent of fish movement varied among segments and tributaries from 0 to 128 river kilometers (rkm). From March to May 2017, Smallmouth Bass (≥305 mm; n = 149) in the Snake, Boise, Payette, and Weiser rivers and in Brownlee Reservoir were implanted with radio transmitters. Of the 149 Smallmouth Bass that were released with radio transmitters, 107 were relocated at least once. Additionally, 79.6% of fish with radio transmitters had a maximum extent of movement of 5 rkm or greater and 42.6% had a maximum extent of 30 rkm or greater; one radio-tagged fish moved 167 rkm upstream. Average daily movement of Smallmouth Bass varied among river segments and was greatest in the spring and summer. Fish from the Snake River, tributaries (e.g., Boise River), and Brownlee Reservoir moved all around the study area, indicating an absence of clear population boundaries. As such, Smallmouth Bass in the study area appear to function as one large population as opposed to multiple subpopulations, thereby indicating that management as one population is likely appropriate.

Idaho↗

Modification of δ D values in eastern Nevada granitoid rocks spatially related to thrust faults

Stable isotope data have been determined for 13 Mesozoic and Tertiary plutons in eastern Nevada and nearby Utah. In the southern Snake Range of eastern Nevada, where relations are best exposed and have been most intensively studied, δ D, δ 18 O, and apparent K-Ar ages depend on proximity to the Snake Range decollement. Where stresses resulting from late movement on the decollement have caused cataclasis of Oligocene (37 Ma) granitoid rock, δ 18 O, δ D, and K-Ar age values as low as −2.5‰, −155‰, and 18 Ma, respectively, have been determined. Where there has been no cataclasis, δ 18 O values of Jurassic, Cretaceous, and Oligocene granitoid rocks are apparently unaffected, but both δ D values and K-Ar ages have been modified for distances of tens of meters below the decollement. Results similar to those in the southern Snake Range have been observed in other eastern Nevada granitoid rocks spatially related to regional thrust faults, as in the Kern Mountains, the Toana Range, and the northern Egan Range. In each of these areas cataclasis or deformation of granitoid rocks has resulted in lowered δ 18 O, δ D, and K-Ar age values. Where there has been no cataclasis or deformation, δ 18 O values are unaffected, but both δ D and K-Ar age values have been lowered by stresses resulting from postcrystallization movement along overlying thrust faults. Many of the plutons discussed have not been deeply eroded, and spatially related thrust faults crop out. Where thrust faults are not in evidence and the granitoid rocks give δ D values lower than about −130‰ along with spuriously low K-Ar age results, modification of the δ D and K-Ar age values may have been caused by stresses related to late movement along an overlying (now eroded) thrust fault.

Contributions to Mineralogy and Petrology↗

Influence of surrounding land-use on mussel growth and glycogen levels in the St. Croix and Minnesota River basins

Freshwater mussels face threats from climate change and changing land use that are dramatically altering their habitat. The health of mussel populations and the state of current and past environmental conditions can be monitored by measuring mussel growth and glycogen levels. In this study we measured growth and glycogen levels in mussels from two small river basins impacted by different land uses. The Snake River in the St. Croix Basin had low levels of suspended sediments and was surrounded mostly by forest and some developed land. The Chippewa, Cottonwood, and Le Sueur rivers in the Minnesota River Basin had significantly higher annual suspended sediment loads and highly agricultural basins. Mussel growth was highest in the Le Sueur and Cottonwood rivers followed by the Chippewa and the Snake rivers. Mussels in the Minnesota Basin rivers all had higher foot glycogen concentrations than the Snake River. These patterns were similar for two mussel species, suggesting that environmental conditions are likely determining levels of growth. Although agriculture had a negative effect on mussel population abundance and diversity, it had a positive effect on growth and glycogen levels.

Minnesota↗

The Missoula and Bonneville floods—A review of ice-age megafloods in the Columbia River basin

The Channeled Scabland of eastern Washington State, USA, brought megafloods to the scientific forefront. A 30,000-km2 landscape of coulees and cataracts carved into the region’s loess-covered basalt attests to overwhelming volumes of energetic water. The scarred landscape, garnished by huge boulder bars and far-travelled ice-rafted erratics, spurred J Harlen Bretz’s vigorously disputed flood hypothesis in the 1920s. First known as the Spokane flood, it was rebranded the Missoula flood once understood that the water came from glacial Lake Missoula, formed when the Purcell Trench lobe of the last-glacial Cordilleran ice sheet dammed the Clark Fork valley in northwestern Idaho with ice a kilometer thick. Bretz’s flood evidence in the once-remote Channeled Scabland, widely seen and elaborated by the 1950s, eventually swayed consensus for cataclysmic flooding. Missoula flood questions then turned to some that continue today: how many? when? how big? what routes? what processes? The Missoula floods passed through eastern Washington by a multitude of valleys, coulees and scabland tracts, some contemporaneously, some sequentially. Which routings and their timing depended on the positions of various lobes of the multi-pronged Cordilleran ice sheet and the erosional development of the channels themselves. The first floods mostly followed the big bend of Columbia valley looping through north-central Washington. But the south-advancing Okanogan ice lobe soon blocked that path, forming long-lasting glacial Lake Columbia in the impounded Columbia valley. Missoula floods into this lake were diverted south out of the Columbia valley and into eastern Washington coulees and scabland tracts. At least four floods entered Moses Coulee, but then as the Okanogan lobe advanced over and blocked the head of that coulee, more eastern paths took the water, including Grand Coulee and the Telford-Crab-Creek and Cheney-Palouse scabland tracts. Flood routing also depended on the erosion of the coulees. At some point, headward erosion of upper Grand Coulee lowered the divide saddle between the west-running Columbia valley and the deep and wide Grand Coulee heading southwest. Still uncertain is when this happened and the consequences with respect to the stage and extent of glacial Lake Columbia and to flood access to the other, higher, flood routes. Downstream, all flood routes converged onto Pasco Basin, flowed through Wallula Gap and the Columbia River Gorge into the Pacific Ocean, following submarine canyons and depositing sediment layers on abyssal plains. Stratigraphic studies indicate dozens—likely more than a hundred—separate Missoula floods during the last glacial period. Over the length of the flood route, backwater areas and depositional basins preserve multiple flood beds, many of which are separated by signs of time, including volcanic ash layers and soil development in subaerial environments; and varve-like beds and pelagic mud layers in lacustrine and marine settings. Evidence also comes from the glacial Lake Missoula basin, where stratigraphy indicates dozens of filling and emptying cycles. Varve counts in conjunction of radiocarbon dating and paleomagnetic secular variation show the repeated filling-and-release cycles of glacial Lake Missoula had intervals possibly as long as 100 years early in the lake’s history but diminished to just one or two years for the last few floods. This behavior accords with jökulhlaup-style floods released by subglacial drainage from a self-dumping ice-dammed lake. But not yet clear is whether such a mechanism applies to all the floods or if some emptied more cataclysmically as hypothesized by some. Radiocarbon dating of sparse organic materials remains key to defining flood chronology but has been lately bolstered by analyses of terrestrial cosmogenic nuclides and optically stimulated luminescence. Varve counts and paleomagnetic secular variation studies help to define durations and intervals represented by sequences of flood beds. The ~16 ka Mount St. Helens Set S tephra is commonly interbedded within flood deposits, enabling correlation of deposits among sites. Tephra from the 13.7–13.4 ka eruption of Glacier Peak overlies all glacial Lake Missoula and Missoula flood deposits, defining an end time. Overall conclusions are that glacial Lake Missoula was extant and producing floods for at least 3–4 ky during 20–14 ka. At least ~75 floods preceded Mount St Helens Set S, followed by 30 or more after the tephra fall. Most floods entered glacial Lake Columbia, impounded by the Okanogan lobe, for 2–5 ky between about 18.5 and 15 ka. Glacial Lake Columbia outlived Lake Missoula by >200–400 yr but may have been born later since at least one flood came down the Columbia valley before the Okanogan ice lobe blocked the Columbia valley at 18.5–18 ka. The maximum extent of the Okanogan and Purcell Trench lobes, many Missoula floods, substantial erosion of upper Grand Coulee, and the widespread tephra falls from Mount St. Helens eruptions all happened about 17–15 ka. People, in the area since 16.6–15.3 ka, almost certainly witnessed the last of the Missoula floods and later large floods from other ice-dammed lakes in the Columbia River basin. Quantitative flow analyses give peak discharge estimates and support understanding of erosional and depositional processes. The first flow assessments were simple cross-section calculations but recent assessments employ two-dimensional hydrodynamic models. The general finding is that emplacement of the maximum stage evidence requires about 20 million m3/s near the Lake Missoula outlet and about 5–15 million m3/s through Wallula Gap and downstream in the Columbia River Gorge. These hydraulic analyses raise still-unresolved questions regarding canyon erosion and possible additional water sources. The large Pleistocene Bonneville flood entered the Columbia River system from the southeast from pluvial Lake Bonneville, the Pleistocene predecessor to Great Salt Lake in the eastern Great Basin. During the last glacial, the lake basin filled, covering >50,000 km2 with 10,400 km3 of water before reaching its maximum possible stage governed by Red Rock Pass, the lowest divide separating the basin from the Snake River basin to the north. The overtopping lake rapidly incised 108–125 m into the Red Rock Pass outlet, spilling half of its total lake volume. G.K. Gilbert described the essential sequence in the 1870s, but the flood was mostly forgotten until the late 1950s when Harold Malde linked the spectacular scabland topography and bouldery “melon gravel” on the Snake River Plain to the Lake Bonneville overflow. The Bonneville flood appears to have been a singular event at about 18 ka. No evidence of multiple or pre-last-glacial spillovers has yet been found. Its total volume was about twice that of a maximum Lake Missoula flood yet its peak discharge was ~1 million m3/s, less than a tenth of the largest Missoula floods. Its comparatively simple flow path and much steadier flow make the Bonneville flood ideal for new studies of erosional and depositional processes. At least two floods seem to have passed down the Columbia valley after the last of the Missoula floods, including a large flood about ~14 ka likely from cataclysmic demise of the thinning Okanogan ice lobe dam impounding glacial Lake Columbia. Floods from earlier glacial ages left scant yet clear evidence in the Channeled Scabland and Columbia valley. But their source, timing, and magnitudes are little understood. Some deposits are paleomagnetically reversed, thus older than ~800 ka. Last-glacial floods and perhaps older ones affected the Snake River Plain, some likely sourced in lakes dammed by alpine glaciers in central Idaho.

Idaho, Oregon, Washington↗

Riparian methylmercury production increases riverine mercury flux and food web concentrations

The production and uptake of toxic methylmercury (MeHg) impacts aquatic ecosystems globally. Rivers can be dynamic and difficult systems to study for MeHg production and bioaccumulation, hence identifying sources of MeHg to these systems is both challenging and important for resource management within rivers and main-stem reservoirs. Riparian zones, which are known biogeochemical hotspots for MeHg production, are understudied as potential sources of MeHg to rivers. Here, we present a comprehensive quantification of the hydrologic and biogeochemical processes governing MeHg concentrations, loads, and bioaccumulation at 16 locations along 164 km of the agriculturally intensive Snake River (Idaho, Oregon USA) during summer baseflow conditions, with emphasis on riparian production of MeHg. Approximately one-third of the MeHg load of the Snake River could not be attributed to inflowing waters (upgradient, tributaries, or irrigation drains). Across the study reach, increases in MeHg loads in surface waters were significantly correlated with MeHg concentrations in riparian porewaters, suggesting riparian zones were likely an important source of MeHg to the Snake River. Across all locations, MeHg concentrations in surface waters positively correlated with MeHg concentrations in benthic snails and clams, supporting that riparian produced MeHg was assimilated into local aquatic food webs. This study contributes new insights into riparian MeHg production within rivers which can inform mitigation efforts to reduce MeHg bioaccumulation in fish.

Idaho, Oregon↗

Longitudinal and seasonal changes of organic matter sources through a semi-arid river-reservoir system

The quality and quantity of organic matter (OM) in a river system directly affects ecosystem health; thus, managers benefit from an in-depth understanding of the drivers and sources of OM. In the Snake River, a highly altered river-reservoir system in the semi-arid western United States, OM production and loading are key drivers of reservoir anoxia, which leads to several deleterious processes such as mercury methylation. However, sources and quantities of OM to the Snake River, and the effects of impoundment on OM moving through the river-reservoir system, are not well understood. Particulate organic carbon (POC), dissolved organic carbon (DOC), particulate nitrogen (PN), chlorophyll a (chl- a ), and δ 15 N–PN and δ 13 C–POC isotopic ratios were measured bi-weekly for over 2 years at four locations through the Snake River Hells Canyon Reservoir Complex to determine spatial and temporal patterns of OM quantities and sources. POC concentrations increased through the riverine zone upstream of the reservoirs, likely due to in situ primary production and/or inputs from tributaries and agricultural drains; then decreased through the most upstream reservoir likely due to particle settling. Isotopic ratios and other OM source indicators (δ 15 N–PN, δ 13 C–POC, POC:PN, chl- a :POC) show that the dominant source of particulate OM was phytoplankton with seasonal terrestrial/macrophytic inputs. Results highlight the effects of major tributary and agricultural drain inputs, primary production, and impoundment on OM composition and concentration through a large river-reservoir system and may inform water quality management efforts in this and similar systems.

Idaho, Oregon↗

Characterization of transport in an acidic and metal-rich mountain stream based on a lithium tracer injection and simulations of transient storage

Physical parameters characterizing solute transport in the Snake River (an acidic and metal-rich mountain stream near Montezuma, Colorado) were variable along a 5.2-km study reach. Stream cross-sectional area and volumetric inflow each varied by a factor of 3. Because of transient storage, the residence time of injected tracers in the Snake River was longer than would be calculated by consideration of convective travel time alone. Distributed inflows along the stream were a significant source of in-stream chemical variations. These transport characteristics of the Snake River were established on the basis of the assumption of lithium as an ideally conservative tracer and use of simulations of advection, dispersion, and transient storage. Evaluations of the validity of this combined tracer and simulation approach lend confidence to the estimation of the physical transport parameters, but further development is warranted for methods of onsite transport experimentation in hydrologically complex, chemically reactive environments.

Water Resources Research↗

Methods of measuring pumpage through closed-conduit irrigation systems

Methods of measuring volumes of water withdrawn from the Snake River and its tributaries and pumped through closed‐conduit irrigation systems were needed for equitable management of and resolution of conflicts over water use. On the basis of evaluations and field tests by researchers from the University of Idaho, Water Resources Research Institute, Moscow, Idaho, an impeller meter was selected to monitor pumpage through closed‐conduit systems. In 1988, impeller meters were installed at 20 pumping stations along the Snake River between the Upper Salmon Falls and C.J. Strike Dams. Impeller‐derived pumpage data were adjusted if they differed substantially from ultrasonic flow‐meter‐ or current‐meter‐derived values. Comparisons of pumpage data obtained by ultrasonic flow‐meter and current‐meter measurements indicated that the ultrasonic flow meter was a reliable means to check operation of impeller meters. The equipment generally performed satisfactorily, and reliable pumpage data could be obtained using impeller meters in closed‐conduit irrigation systems. Many pumping stations that divert water from the Snake River for irrigation remain unmeasured; however, regression analyses indicate that total pumpage can be reasonably estimated on the basis of electrical power consumption data, an approximation of total head at a pumping station, and a derived coefficient.

Journal of Irrigation and Drainage Engineering↗

Relationship of external fish condition to pathogen prevalence and out-migration survival in juvenile steelhead

Understanding how the external condition of juvenile salmonids is associated with internal measures of health and subsequent out‐migration survival can be valuable for population monitoring programs. This study investigated the use of a rapid, nonlethal, external examination to assess the condition of run‐of‐the‐river juvenile steelhead Oncorhynchus mykiss migrating from the Snake River to the Pacific Ocean. We compared the external condition (e.g., body injuries, descaling, external signs of disease, fin damage, and ectoparasite infestations) with (1) the internal condition of a steelhead as measured by the presence of selected pathogens detected by histopathology and polymerase chain reaction analysis and (2) out‐migration survival through the Snake and Columbia rivers as determined by passive integrated transponder (PIT) tag technology. The results from steelhead captured and euthanized ( n = 222) at Lower Monumental Dam on the lower Snake River in 2008 indicated that external condition was significantly correlated with selected measures of internal condition. The odds of testing positive for a pathogen were 39.2, 24.3, and 5.6 times greater for steelhead with severe or moderate external signs of disease or more than 20% descaling, respectively. Capture–recapture models of 22,451 PIT‐tagged steelhead released at Lower Monumental Dam in 2007–2009 indicated that external condition was significantly correlated with juvenile survival. The odds of out‐migration survival for steelhead with moderate or severe external signs of disease, more than 20% descaling, or severe fin damage were 5.7, 4.9, 1.6, and 1.3 times lower, respectively, than those for steelhead without these external conditions. This study effectively demonstrated that specific measures of external condition were associated with both the internal condition and out‐migration survival of juvenile steelhead.

Oregon, Washington↗

Modeling strategies and evaluating success during repatriations of elusive and endangered species

Wildlife repatriation is an important tool to decrease extinction risk for imperiled species, but successful repatriations require significant time, resources and planning. Because repatriations can be long and expensive processes, clear release strategies and monitoring programs are essential to efficiently use resources and evaluate success. However, monitoring can be challenging and surrounded by significant uncertainty, particularly for secretive species with extremely low detection probability. Here, we simulated how alternative repatriation strategies influence repatriation success for the eastern indigo snake Drymarchon couperi , a federally-Threatened species that is currently being repatriated in Alabama and Florida. Critically, we demonstrate how observed population growth can differ from true population growth when detection probabilities are low and mark-recapture analyses are not an option. Specifically, we built a stochastic stage-based population model to predict population growth and extinction risk under different release strategies and use information from ongoing repatriations to predict success and guide future releases. Because D. couperi is difficult to monitor, we modeled how detection probability influenced perceptions of abundance and population growth by monitoring programs. Simulated repatriation strategies releasing older, head-started snakes in greater abundance and frequency created wild populations with decreased extinction risk relative to scenarios releasing fewer and younger snakes less frequently. Ongoing repatriations currently have a 0.23 (Alabama) and 0.61 (Florida) probability of quasi-extinction, but extinction risk decreased to 0.07 and 0.10 at sites upon achieving the targeted number of releases. Abundances observed under realistic detection thresholds for D. couperi did not always predict true population growth; specifically, we demonstrate that monitoring programs during repatriations of secretive species may indicate that efforts have been unsuccessful when populations are actually growing. Overall, our modeling framework informs release strategies to maximize repatriation success while demonstrating the need to consider how detection processes influence assessment of success during conservation interventions.

Florida↗