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USGS2004

Isotopic views of food web structure in the Florida Everglades

Introduction Nearly one million acres of the Everglades are under a health advisory that discourages the human consumption of largemouth bass and several other fish because of high mercury contents. Food web structure (base of food web, number of trophic steps) plays a potentially critical role in determining the patterns of mercury contamination of the Everglades ecosystem. Methylmercury (MeHg) is present in low concentrations in water, yet after entering the base of the food web it biomagnifies to toxic concentrations in organisms that occupy higher trophic positions (like bass). One of the main research questions under investigation by a multi-agency task force in the Everglades is how MeHg bioaccumulates up the food chain in this complex aquatic ecosystem. Understanding variations in food web structure may help explain mercury patterns in the Everglades and ultimately lead to more effective restoration of Everglades ecosystems.

Florida↗

USGS2006

Water quality in the Blue River Basin, Kansas City metropolitan area, Missouri and Kansas, July 1998 to October 2004

Water-quality data were collected from sites in the Blue River Basin from July 1998 to October. Sites upstream from wastewater-treatment plants or the combined sewer system area had lower concentrations of total nitrogen, phosphorus, organic wastewater compounds, and pharmaceuticals, and more diverse aquatic communities. Sites downstream from wastewater-treatment plants had the largest concentrations and loads of nutrients, organic wastewater compounds, and pharmaceuticals. Approximately 60 percent of the total nitrogen and phosphorus in Blue River originated from the Indian Creek, smaller amounts from the upper Blue River (from 28 to 16 percent), and less than 5 percent from Brush Creek. Nutrient yields from the Indian Creek and the middle Blue River were significantly greater than yields from the upper Blue River, lower Brush Creek, the outside control site, and other U.S. urban sites. Large concentrations of nutrients led to eutrophication of impounded Brush Creek reaches. Bottom sediment samples collected from impoundments generally had concentrations of organic wastewater and pharmaceutical compounds equivalent to or greater than, concentrations observed in streambed sediments downstream from wastewater-treatment plants. Bacteria in streams largely was the result of nonpoint-source contributions during storms. Based on genetic source-tracking, average contributions of in-stream Esherichia coli bacteria in the basin from dogs ranged from 26-32 percent of the total concentration, and human sources ranged from 28-42 percent. Macro invertebrate diversity was highest at sites with the largest percentage of upstream land use devoted to forests and grasslands. Declines in macro invertebrate community metrics were correlated strongly with increases in several, inter-related urbanization factors.

Fact Sheet↗

USGS2006

Water quality in the Blue River basin, Kansas City metropolitan area, Missouri and Kansas, July 1998 to October 2004

Scientific Investigations Report↗

USGS2013

Prioritization of constituents for national- and regional-scale ambient monitoring of water and sediment in the United States

A total of 2,541 constituents were evaluated and prioritized for national- and regional-scale ambient monitoring of water and sediment in the United States. This prioritization was done by the U.S. Geological Survey (USGS) in preparation for the upcoming third decade (Cycle 3; 2013–23) of the National Water-Quality Assessment (NAWQA) Program. This report provides the methods used to prioritize the constituents and the results of that prioritization. Constituents were prioritized by the NAWQA National Target Analyte Strategy (NTAS) work group on the basis of available information on physical and chemical properties, observed or predicted environmental occurrence and fate, and observed or anticipated adverse effects on human health or aquatic life. Constituents were evaluated within constituent groups that were determined on the basis of physical or chemical properties or on uses or sources. Some constituents were evaluated within more than one constituent group. Although comparable objectives were used in the prioritization of constituents within the different constituent groups, differences in the availability of information accessed for each constituent group led to the development of separate prioritization approaches adapted to each constituent group to make best use of available resources. Constituents were assigned to one of three prioritization tiers: Tier 1, those having the highest priority for inclusion in ambient monitoring of water or sediment on a national or regional scale (including NAWQA Cycle 3 monitoring) on the basis of their likelihood of environmental occurrence in ambient water or sediment, or likelihood of effects on human health or aquatic life; Tier 2, those having intermediate priority for monitoring on the basis of their lower likelihood of environmental occurrence or lower likelihood of effects on human health or aquatic life; and Tier 3, those having low or no priority for monitoring on the basis of evidence of nonoccurrence or lack of effects on human health or aquatic life, or of having insufficient evidence of potential occurrence or effects to justify placement into Tier 2. Of the 1,081 constituents determined to be of highest priority for ambient monitoring (Tier 1), 602 were identified for water and 686 were identified for sediment (note that some constituents were evaluated for both water and sediment). These constituents included various types of organic compounds, trace elements and other inorganic constituents, and radionuclides. Some of these constituents are difficult to analyze, whereas others are mixtures, isomers, congeners, salts, and acids of other constituents; therefore, modifications to the list of high-priority constituents for ambient monitoring could be made on the basis of the availability of suitable methods for preparation, extraction, or analysis. An additional 1,460 constituents were placed into Tiers 2 or 3 for water or sediment, including some constituents that had been placed into Tier 1 for a different matrix; 436 constituents were placed into Tier 2 for water and 246 constituents into Tier 2 for sediment; 979 constituents were placed into Tier 3 for water and 779 constituents into Tier 3 for sediment.

Scientific Investigations Report↗

USGS2012

Effects of a drawdown on plant communities in a freshwater impoundment at Lacassine National Wildlife Refuge, Louisiana

Disturbance is an important natural process in the creation and maintenance of wetlands. Water depth manipulation and prescribed fire are two types of disturbance commonly used by humans to influence vegetation succession and composition in wetlands with the intention of improving wildlife habitat value. A 6,475-hectare (ha) impoundment was constructed in 1943 on Lacassine National Wildlife Refuge in southwest Louisiana to create freshwater wetlands as wintering waterfowl habitat. Ten years after construction of the impoundment, called Lacassine pool, was completed, refuge staff began expressing concerns about increasing emergent vegetation cover, organic matter accumulation, and decreasing area of open water within the pool. Because the presence of permanent standing water impedes actions that can address these concerns, a small impoundment within the pool where it was possible to manipulate water depth was created. The 283-ha subimpoundment called Unit D was constructed in 1989. Water was pumped from Unit D in 1990, and the unit was permanently reflooded about 3 years later. Four prescribed fires were applied during the drawdown. A study was initiated in 1990 to investigate the effect of the experimental drawdown on vegetation and soils in Unit D. Four plant community types were described, and cores were collected to measure the depth of the soil organic layer. A second study of Unit D was conducted in 1997, 4 years after the unit was reflooded, by using the same plots and similar sampling methods. This report presents an analysis and synthesis of the data from the two studies and provides an evaluation of the impact of the management techniques applied. We found that plant community characteristics often differed among the four communities and varied with time. Species richness increased in two of the communities, and total aboveground biomass increased in all four during the drawdown. These changes, however, did not persist when Unit D was reflooded; by 1997, species richness and aboveground biomass were equivalent to values before the drawdown. The change in waterfowl food value of the plant communities during the drawdown varied; it did not change in two communities, increased in one, and decreased in one. A consistent pattern noted was that waterfowl food value was higher in communities that contained open water than in those dominated by emergent plants, both soon after the drawdown was initiated in Unit D and 4 years after reflooding. A reduction in depth of the soil organic layer became apparent 20 months after drawdown was initiated, and this reduction persisted in 1997, 4 years after reflooding. A separate 2003 study on soil characteristics in Lacassine pool found that the depth to the clay layer was lower in Unit D than in the rest of the pool. We were not able to establish a cause-and-effect relation between any changes noted and the fact water levels in the unit were drawn down because the initial study in 1990 did not include control plots. Changes in vegetation and soil organic layer depth identified in Unit D may have occurred in the surrounding Lacassine pool habitat as well. Similarly, we were unable to form any conclusions about the effect of the prescribed fire treatments because there was no information on which plots were burned. Because of the known relation between anaerobic soil conditions and reduced decomposition of organic matter, however, it is likely that the drawdown in Unit D resulted in an increased decomposition rate and a reduction in the depth of the soil organic layer.

Louisiana↗

USGS2013

Status and understanding of groundwater quality in the San Francisco Bay groundwater basins, 2007—California GAMA Priority Basin Project

Groundwater quality in the approximately 620-square-mile (1,600-square-kilometer) San Francisco Bay study unit was investigated as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in the Southern Coast Ranges of California, in San Francisco, San Mateo, Santa Clara, Alameda, and Contra Costa Counties. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA San Francisco Bay study was designed to provide a spatially unbiased assessment of the quality of untreated groundwater within the primary aquifer system, as well as a statistically consistent basis for comparing water quality throughout the State. The assessment is based on water-quality and ancillary data collected by the USGS from 79 wells in 2007 and is supplemented with water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer system is defined by the depth interval of the wells listed in the CDPH database for the San Francisco Bay study unit. The quality of groundwater in shallower or deeper water-bearing zones may differ from that in the primary aquifer system; shallower groundwater may be more vulnerable to surficial contamination. The first component of this study, the status of the current quality of the groundwater resource, was assessed by using data from samples analyzed for volatile organic compounds (VOCs), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. Water- quality data from the CDPH database also were incorporated for this assessment. This status assessment is intended to characterize the quality of groundwater resources within the primary aquifer system of the San Francisco Bay study unit, not the treated drinking water delivered to consumers by water purveyors. Relative-concentrations (sample concentration divided by the benchmark concentration) were used for evaluating groundwater quality for those constituents that have Federal and (or) California benchmarks. A relative-concentration greater than (>) 1.0 indicates a concentration greater than a benchmark, and a relative-concentration less than or equal to (≤) 1.0 indicates a concentration equal to or less than a benchmark. Relative-concentrations of organic and special-interest constituents were classified as low (relative- concentration ≤ 0.1), moderate (0.1 < relative- concentration ≤ 1.0), or high (relative-concentration > 1.0). Inorganic constituent relative- concentrations were classified as low (relative-concentration ≤ 0.5), moderate (0.5 < relative-concentration ≤ 1.0), or high (relative- concentration > 1.0). A lower threshold value of relative-concentration was used to distinguish between low and moderate values of organic constituents because organic constituents are generally less prevalent and have smaller relative-concentrations than naturally occurring inorganic constituents. Aquifer-scale proportion was used as the metric for evaluating regional-scale groundwater quality. High aquifer-scale proportion is defined as the percentage of the primary aquifer system that has relative-concentration greater than 1.0 for a particular constituent or class of constituents; proportion is based on an areal rather than a volumetric basis. Moderate and low aquifer-scale proportions were defined as the percentages of the primary aquifer system that have moderate and low relative-concentrations, respectively. Two statistical approaches—grid-based and spatially weighted—were used to evaluate aquifer-scale proportion for individual constituents and classes of constituents. Grid-based and spatially weighted estimates were comparable in the San Francisco Bay study unit (90-percent confidence intervals). Inorganic constituents with health-based benchmarks were present at high relative-concentrations in 5.1 percent of the primary aquifer system, and at moderate relative-concentrations in 25 percent. The high aquifer-scale proportion of inorganic constituents primarily reflected high aquifer-scale proportions of barium (3.0 percent) and nitrate (2.1 percent). Inorganic constituents with secondary maximum contaminant levels were present at high relative-concentrations in 14 percent of the primary aquifer system and at moderate relative-concentrations in 33 percent. The constituents present at high relative-concentrations included total dissolved solids (7.0 percent), chloride (6.1 percent), manganese (12 percent), and iron (3.0 percent). Organic constituents with health-based benchmarks were present at high relative-concentrations in 0.6 percent and at moderate relative-concentrations in 12 percent of the primary aquifer system. Of the 202 organic constituents analyzed for, 32 were detected. Three organic constituents were frequently detected (in 10 percent or more of samples): the trihalomethane chloroform, the solvent 1,1,1-trichloroethane and the refrigerant 1,1,2-trichlorotrifluoroethane. One special-interest constituent, perchlorate, was detected at moderate relative-concentrations in 42 percent of the primary aquifer system. The second component of this work, the understanding assessment, identified some of the primary natural and human factors that may affect groundwater quality by evaluating land use, physical characteristics of the wells, and geochemical conditions of the aquifer. Results from these evaluations were used to explain the occurrence and distribution of constituents in the study unit.

California↗

USGS1990

Sago pondweed (Potamogeton pectinatus L.): A literature review

Sago pondweed ( Potamogeton pectinatus L.) is a submersed macrophyte of nearly cosmopolitan distribution. The plant is of worldwide importance as a waterfowl food but also can be a nuisance in irrigation canals and recreational areas. The plant reproduces by many different means, depending on habitat and environmental stress. Several genetic ecotypes have evolved. Most important as waterfowl food are the turions (tubers), vegetative propagules rich in carbohydrates that are mostly buried in bottom sediments. In temperate wetlands, most turions sprout in spring, making sago behave as an annual. Drupelets (seeds) are the sexual propagules of sago and provide a mechanism for sago to survive periods of drought and excessive water salinity. Drupelets can be washed ashore or carried by birds for long distances. Sago decomposes rapidly at senescence, annually in temperate wetlands. Sago is mostly found in semipermanently or permanently flooded mixosaline lacustrine, palustrine, and riverine wetlands < 2.5 m deep, where fetches are not large or currents are < 1 m/s. Sago seems to prefer stable water levels but can tolerate significant water level fluctuations. Among the Potamogetons, only sago tolerates high salinity, pH, and alkalinity, but it fares poorly among specialist taxa in acidic or nutrient-poor waters. Sago is highly tolerant of eutrophic waters, and it can be the only species of submersed macrophyte present in heavily polluted sites. Sago grows in nearly all bottom substrates. Turbidity is the factor that most frequently limits sago growth. Sago often occurs in monotypic stands but can grow with many other submersed and emergent macrophytes. Dominance by sago in certain wetlands sometimes alternates with dominance by other submersed macrophytes when salinities or other environmental factors change. Sago also can be associated with a large variety of unattached filamentous, planktonic, or epiphytic algae. Increased turbidity caused by planktonic algae often is responsible for lowered sago production. Less common biotic limiting factors are organic pollutants and consumption and uprooting by waterfowl and fish. Sago provides food or shelter for amphibians, reptiles, fish, and mammals. The greatest value of sago in North America is as food for migrant and staging waterfowl, primarily diving ducks and swans. Sago beds also provide habitat for a large complex of invertebrates (an important food source for young waterfowl), but direct consumption of living sago by invertebrates is negligible. Sago has been propagated for many years-indoors, as an experimental organism for work in plant physiology or herbicide testing, and outdoors, for purposes of attracting waterfowl. Much work has also been done developing methods to control excessive sago growth in fishponds and irrigation canals. Future research should concentrate on (1) determining, in a variety of wetland types, the causes of light-limiting turbidity that often suppresses sago growth, (2) understanding the ways in which human activities on and near wetlands affect sago production, and (3) developing reliable and predictable techniques to stimulate sago production for waterfowl by using water level manipulations and other means, in a variety of environmental settings.

Resource Publication↗

USGS2000

Summary of the major water-quality findings from the Eastern Iowa Basins study unit of the National Water-Quality Assessment Program

An integrated assessment of the water quality in streams and aquifers in the Wapsipinicon, Iowa, Cedar, and Skunk River basins was conducted in 1996 through 1998 as part of the Eastern Iowa Basins (EIWA) study unit of the U.S. Geological Survey's National Water-Quality Assessment Program (NAWQA). The EIWA study unit is one of 59 study units across the Nation designed to assess the status and trends in the quality of the Nation's ground- and surface-water resources and to link the status and trends with an understanding of the natural and human factors that affect the quality of water. Over 90 percent of the land in the EIWA study unit is used for agricultural purposes, while forested areas account for only 4 percent and urban areas about 2 percent of the land. Surface-water samples were collected monthly and during selected storm events from six sites in medium-sized basins (125 to about 400 mi2) and five sites in large river basins (2,300 to 12,500 mi2). The medium-sized basins were selected to be representative of various physical features, hydrogeology, and agricultural landuse (row crops and concentrated animal feeding operations) that may affect water quality. The large river sites were selected to determine the integrated effects of combinations of landuse and hydrogeology on river-water quality. Ground-water samples were collected primarily from the alluvial aquifers because of the aquifers' direct hydraulic connection with rivers and streams and because alluvial aquifers are one of the most important sources for domestic, municipal, and industrial water supplies in the study area. Monitoring wells were installed in agricultural and urban areas of the alluvial aquifers to assess the quality of the most recently recharged water in relation to land use. Existing domestic wells screened in alluvial aquifers and the Silurian/Devonian aquifer were sampled to assess deeper and older ground water. Surface- and ground-water samples were analyzed for a wide variety of chemical constituents (major ions, nutrients, and pesticides) commonly associated with agricultural and urban activities. Because they were not expected to occur in rivers and streams, volatile organic compounds (VOC's), commonly comprising fuels, solvents, and other industrial compounds were only analyzed in ground-water samples. The age of the ground water, important information needed to relate ground-water quality to land use, was determined using both tritium and chlorofluorocarbons (Freon?) age-dating methods. Results from the EIWA NAWQA study build on previous and ongoing research and water-quality monitoring programs in Iowa and provide new insights into the relation between the quality of the State's water resources and human activities. The major findings from the study are listed below.

Iowa↗

USGS2019

Nonlinearities in transmission dynamics and efficient management of vector-borne pathogens

Integrated Pest Management (IPM) is an approach to minimizing economic and environmental harm caused by pests, and Integrated Vector Management (IVM) uses similar methods to minimize pathogen transmission by vectors. The risk of acquiring a vector-borne infection is often quantified using the density of infected vectors. The relationship between vector numbers and risk of human infection is more or less linear when both vector numbers and pathogen prevalence in vectors are low, but the relationship is nonlinear when vector density and/or infection prevalence are high. Therefore, the density of infected vectors often does not accurately predict risk of human exposure to pathogens, and traditional estimates of % Control often overestimate the level of protection from infection resulting from management programs. We suggest a modified estimator, % Protection, which more accurately quantifies protection against human infection resulting from a management intervention. Cost-effectiveness of a management program is critical to protection of both public health and the environment, because the more efficiently available resources and funding are used, the fewer people get sick, and well-targeted efficient management programs minimize the need for poorly-targeted, expensive environmental interventions (e.g., broadscale pesticide applications) that tend to damage nontarget organisms and natural systems. Design of an efficient, cost-effective IVM program requires knowledge of the cost-effectiveness functions (the effectiveness of control methods at lowering vector bites and/or infection prevalence with different levels of application) of the various control methods to be applied. Alternative programs can be designed that optimize % Protection by integrating different control methods at different levels of investment, and environmental effects of these alternatives can be compared, allowing environmental considerations to be included explicitly in the decision process. IPM, IVM, and Adaptive Management share the characteristic that management decisions must be made with incomplete knowledge of the functioning of natural systems or the efficacies of interventions. IVM surveillance programs that assess the effects of individual control methods and of combinations of control methods on the numbers of vector bites and on infection prevalence in vectors, can increase knowledge of pathogen transmission dynamics and provide information to improve program effectiveness in subsequent applications.

Ecological Applications↗

USGS2011

U.S. Department of Energy's regional carbon sequestration partnership initiative: Update on validation and development phases

The U.S. Department of Energy (DOE) is the lead federal agency for the development and deployment of carbon sequestration technologies. The Regional Carbon Sequestration Partnerships (RCSPs) are the mechanism DOE utilizes to prove the technology and to develop human capital, stakeholder networks, information for regulatory policy, best practices documents and training to work toward the commercialization of carbon capture and storage (CCS). The RCSPs are tasked with determining the most suitable technologies, regulations, and infrastructure for carbon capture, transport, and storage in their respective geographic areas of responsibility. The seven partnerships include more than 400 state agencies, universities, national laboratories, private companies, and environmental organizations, spanning 43 states and four Canadian provinces. The Regional Partnerships Initiative is being implemented in three phases: Characterization, Validation, and Development. The initial Characterization Phase began in 2003 and was completed in 2005 and focused on characterization of CO2 storage potential within each region. It was followed by the Validation Phase, which began in 2005 and is nearing completion in 2011. The focus of the Validation Phase has been on small-scale field tests throughout the seven partnerships in various formation types such as saline, oil-bearing, and coal seams. The Validation Phase has characterized suitable CO2 storage reservoirs and identified the need for comprehensive legal and regulatory frameworks to enable commercial-scale CCS deployment. Finally, the Development Phase will consist of a series of large-scale, one-million-ton, injection tests throughout the United States and Canada. The objective of these large-scale tests is to identify the regulatory path or challenges in permitting CCS projects, to demonstrate the technology can inject CO2 safely, and to verify its permanence in geologic formations in preparation for the commercialization of geologic sequestration. ?? 2010 Elsevier Ltd. All rights reserved. ?? 2011 Published by Elsevier Ltd.

Conference Paper↗

USGS2013

Dynamics of fecal indicator bacteria, bacterial pathogen genes, and organic wastewater contaminants in the Little Calumet River: Portage Burns Waterway, Indiana

Little information exists on the co-occurrence of fecal indicator bacteria (FIB), bacterial pathogens, and organic wastewater-associated chemicals (OWCs) within Great Lakes tributaries. Fifteen watershed sites and one beach site adjacent to the Little Calumet River–Portage Burns Waterway (LCRPBW) on Lake Michigan were tested on four dates for pH, dissolved oxygen, specific conductance, chloride, color, ammonia- and nitrate-nitrogen, soluble phosphorus, sulfate, turbidity, and atrazine; for concentrations of FIB; and for genes indicating the presence of human-pathogenic enterococci (ENT) and of Shiga-toxin producing Escherichia coli (EC) from various animal sources. Nineteen samples were also tested for 60 OWCs. Half of the watershed samples met EC recreational water quality standards; none met ENT standards. Human-wastewater-associated OWC detections were correlated with human-influence indicators such as population/km 2 , chloride concentrations, and the presence of WWTP effluents, but EC and ENT concentrations were not. Bacterial pathogen genes indicated rural human and several potential animal sources. OWCs of human or ecosystem health concern (musk fragrances AHTN and HHCB, alkylphenols, carbamazepine) and 3 bacterial pathogen genes were detected at the mouth of the LCRPBW, but no such OWCs and only 1 pathogen gene were detected at the beach. The LCRPBW has significant potential to deliver FIB, potential bacterial pathogens, and OWCs of human or ecosystem health concern to the nearshore of Lake Michigan, under conditions enhancing nearshore transport of the river plume. Nearshore mixing of lake and river water, and the lack of relationship between OWCs and FIB or pathogen genes, pose numerous challenges for watershed and nearshore assessment and remediation.

Indiana↗

USGS2006

The genetic basis of hair whorl, handedness, and other phenotypes

Evidence is presented that RHD , RHCE , and other RH genes, may be interesting candidates to consider when searching for the genetic basis of hair whorl rotation (i.e., clockwise or counterclockwise), handedness (i.e., right handed, left handed or ambidextrous), speech laterality (i.e., right brained or left brained), speech dyslexia (e.g., stuttering), sexual orientation (i.e., heterosexual, homosexual, bisexual, or transsexual), schizophrenia, bipolar disorder, and autism spectrum disorder. Such evidence involves the need for a genetic model that includes maternal immunization to explain some of the empirical results reported in the literature. The complex polymorphisms present among the maternally immunizing RH genes can then be used to explain other empirical results. Easily tested hypotheses are suggested, based upon genotypic (but not phenotypic) frequencies of the RH genes. In particular, homozygous dominant individuals are expected to be less common or lacking entirely among the alternative phenotypes. If it is proven that RH genes are involved in brain architecture, it will have a profound effect upon our understanding of the development and organization of the asymmetrical vertebrate brain and may eventually lead to a better understanding of the developmental processes which occur to produce the various alternative phenotypes discussed here. In addition, if RH genes are shown to be involved in the production of these phenotypes, then the evolutionary studies can be performed to demonstrate the beneficial effect of the recessive alleles of RHD and RHCE , and why human evolution appears to be selecting for the recessive alleles even though an increase in the frequency of such alleles may imply lower average fecundity among some individuals possessing them.

Medical Hypotheses↗

USGS1996

Benthic invertebrates of benchmark streams in agricultural areas of eastern Wisconsin — Western Lake Michigan drainages

This study describes the benthic invertebrate communities of 20 benchmark streams in agricultural areas of eastern Wisconsin. Streams with minimal adverse effects from human activity were selected from four agricultural areas with differing surficial deposits and bedrock types (relatively homogeneous units, or RHU's). Most aquatic invertebrate orders were well represented in the 20 benchmark stream samples; 217 species and 151 genera within 56 families were identified. Diptera was the best represented order (96 species), followed by Trichoptera (42 species) and Ephemeroptera (26 species). Diptera were the most abundant organisms in terms of numbers of individuals in the sample (28 percent of the total) followed by Trichoptera (25 percent) and Ephemeroptera (13 percent). Nine species of freshwater mussels were found, but only in 5 of the 20 benchmark streams. Community measures were calculated for the following: total number of individuals; number of species; number of families; Margalef's diversity index; percent dominant family; percent Ephemeroptera-Plecoptera-Trichoptera (EPT); ratio of EPT to Chironomidae; percent shredders; ratio of scrapers to collectors-gatherers-filterers; Hilsenhoff's Biotic Index; Hilsenhoff's family level biotic index; and mean tolerance value. The S AS statistical software package was used for calculations of variance and correlations, normality checks, and principal components analysis of these measures and to find relations between benthic-invertebrate data and environmental-setting, habitat, and water-quality data. Coefficients of variation within the RHU's were as great or greater than those for all 20 streams for most measures and RHU's. The specific taxa assemblages present at the sites did not show distinct differences between RHU's or similarities within the RHU's. The covariance and the Kruskal-Wallis tests showed that the benthic invertebrate measures were not related to RHU. These results all indicate that the combined effect of the RHU variables (bedrock geology, texture of surficial deposits, and land use/land cover) were not elemental in describing invertebrate communities in the study-area streams. A principal components analysis (PCA) was done on the 20 benchmark streams which used the invertebrate population measures as variables. A three-dimensional ordination plot of these components revealed that 18 of the 20 streams could be divided into three groups relative to stream size, available habitat, and water quality. The three classifications of streams include large, warmer streams with slight pollution; deep, mixed-water streams with minimal pollution; and small, cold, pristine headwater streams. The two streams not defined by the three PCA groupings were not suitable to represent benchmark conditions. One site lacked suitable quality habitat or sufficient nutrients to support a healthy population of invertebrates, causing low measures of diversity. The other site appeared to be affected by sedimentation and low flows. The classification groupings did not show any significant relations to percentage agricultural land use. Percentage of agricultural land use varied greatly within each group and the means for each group were similar. All streams in this study had some level of protection from agricultural practices in their basins. Although the intensity of agriculture is known to be a factor causing deterioration of invertebrate populations in past studies, the finding in this study indicated that the level of protection the stream received and other factors such as environmental setting and habitat could be more important to benthic invertebrates than the percentage of agriculture in the basin. Information gathered from these benchmark streams can be used as a regional reference for comparison with other streams in agricultural areas, based on communities of aquatic biota, habitat, and water quality.

Wisconsin↗

USGS1999

Surface-water-quality assessment of the Yakima River basin, Washington. Distribution of pesticides and other organic compounds in water, sediment, and aquatic biota, 1987-91: With a section on dissolved organic carbon in the Yakima River basin

During 1987-91, chemical data were collected for pesticides and other organic compounds in surface water, streambed sediment, suspended sediment, agricultural soil, and aquatic biota to determine the occurrence, distribution, transport, and fate of organic compounds in the Yakima River basin in Washington. The report describes the chemical and physical properties of the compounds most frequently detected in the water column; organochlorine compounds including DDT, organophosphorus compounds, thiocarbamate and sulfite compounds, acetamide and triazine compounds, and chlorophenoxy-acetic acid and benzoic compounds. Concentrations are evaluated relative to chronic-toxicity water quality criteria and guidelines for the protection of human health and freshwater aquatic life.

Washington↗

USGS1997

Summary of information on aquatic biota and their habitats in the Willamette Basin, Oregon, through 1995

Available information on aquatic biota of the Willamette Basin was reviewed and summarized to describe current and historical conditions as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Biological parameters emphasized include the status, distribution, and trends of aquatic biota, particularly algae, macroinvertebrates, and fish; the condition of aquatic and riparian habitat in which these biota reside; and the response of these biota to natural and human-associated impacts, including the level, type, and effect of contaminants. Considerable data are available on aquatic biota in the Willamette Basin, although the information is highly uneven relative to taxa and spatial scope. Extensive information exists for high-profile taxa, such as salmonid fishes, but less information is available for macroinvertebrates, and relatively little data exist for algae. Additionally, some areas such as the H.J. Andrews Experimental Forest and the main stem Willamette River have been extensively studied, whereas data are limited for many other areas. The basin supports a diverse aquatic macroinvertebrate fauna. Available data indicate a relatively high diversity of taxa and a high richness of Ephemeroptera, Plecoptera, Trichoptera (EPT) taxa in the upper reaches of the basin. In the lower main stem reaches, macroinvertebrate assemblages are dominated by pollution tolerant organisms and those adapted to low dissolved oxygen levels. Most of the limited data on algae are from sampling in the main stem Willamette River. Diatoms and blue-green algae are the dominant algal forms. Approximately 61 fish species occur in the basin, although nearly half are introduced. Species richness and distribution are highly correlated with elevation, stream gradient, and water temperature. High elevation, cold water, mountain streams are characterized by a few species of salmonids, sculpins, suckers, and whitefish. Low elevation, main stem reaches of major rivers and streams are dominated by warm water species, such as bass, catfish, and several species in the pan fish group. The only species of fish listed as threatened or endangered is the Oregon chub (Oregonichthys crameri). The effect of an expanding human presence in the Willamette Basin has substantially altered aquatic and riparian habitats, and the biota that use or reside in these habitats. Construction of dams, channelization and bank stabilization of rivers, species introductions, supplementations of fisheries through aquaculture, timber harvesting, agricultural activities, and urbanization have contributed to changes in aquatic habitats and biota from historical conditions. Aquatic toxicological investigations in the basin have focused primarily on fish. These studies have addressed chlorinated pesticides, polychlorinated biphenyls (PCBs), dioxins and furans, polycyclic aromatic hydrocarbons (PAHs), and trace elements in aquatic tissue, as well as fish health assessments, skeletal abnormalities, and aquatic toxicological responses. Several pesticides exceeded U.S. Environmental Protection Agency and State water-quality criteria for the protection of aquatic life. Elevated PCB, dioxin, and furan concentrations were associated with point sources, such as pulp and paper mills. Elevated concentrations of mercury in aquatic tissue were associated with several reservoirs. Fish health assessments and skeletal abnormality studies detected high levels of abnormalities in fish from the main stem Willamette River. Few investigations have examined aquatic toxicological responses, such as enzyme induction assays, growth assays, and biomarker studies.

Oregon↗

USGS2012

Hydrogeology, water chemistry, and transport processes in the zone of contribution of a public-supply well in Albuquerque, New Mexico, 2007-9

The National Water-Quality Assessment Program (NAWQA) of the U.S. Geological Survey began a series of groundwater studies in 2001 in representative aquifers across the Nation in order to increase understanding of the factors that affect transport of anthropogenic and natural contaminants (TANC) to public-supply wells. One of 10 regional-scale TANC studies was conducted in the Middle Rio Grande Basin (MRGB) in New Mexico, where a more detailed local-scale study subsequently investigated the hydrogeology, water chemistry, and factors affecting the transport of contaminants in the zone of contribution of one 363-meter (m) deep public-supply well in Albuquerque. During 2007 through 2009, samples were collected for the local-scale study from 22 monitoring wells and 3 public-supply (supply) wells for analysis of major and trace elements, arsenic speciation, nutrients, dissolved organic carbon, volatile organic compounds (VOCs), dissolved gases, stable isotopes, and tracers of young and old water. To study groundwater chemistry and ages at various depths within the aquifer, the monitoring wells were divided into three categories: (1) each shallow well was screened across the water table or had a screen midpoint within 18.3 m of the water level in the well; (2) each intermediate well had a screen midpoint between about 27.1 and 79.6 m below the water level in the well; and (3) each deep well had a screen midpoint about 185 m or more below the water level in the well. The 24-square-kilometer study area surrounding the "studied supply well" (SSW), one of the three supply wells, consists of primarily urban land within the MRGB, a deep alluvial basin with an aquifer composed of unconsolidated to moderately consolidated deposits of sand, gravel, silt, and clay. Conditions generally are unconfined, but are semiconfined at depth. Groundwater withdrawals for public supply have substantially changed the primary direction of flow from northeast to southwest under predevelopment conditions, to west to east under modern conditions. Analysis of age tracers indicates that groundwater from most sampled wells is dominated by old (pre-1950) water, ranging in mean age from about 4,000 years to more than 22,000 years, but includes a fraction of young (post-1950) recharge. Patterns in chemical and isotopic data are consistent with the conclusions that shallow groundwater in the area typically includes a fraction that evaporated prior to recharge and (or) flushed accumulated solutes out of the unsaturated zone during recharge, and that shallow groundwater has mixed to deeper parts of the aquifer, which receives recharge mainly by seepage from the Rio Grande. Among shallow and intermediate wells that produced water with a fraction of young recharge, that fraction ranged between 1.5 and 46 percent. Samples from the two deep wells had groundwater ages exceeding 18,000 years, with no fraction of young recharge. Two supply wells (including the SSW) had a fraction of young recharge, which ranged between about 3 and 11 percent, despite mean groundwater ages exceeding 10,000 years. The fraction of young recharge to the SSW varied seasonally, probably because seasonal pumping patterns affected local hydraulic gradients and (or) because of flow through the well bore when the SSW is not pumping. Well-bore flow data collected during winter (low-pumping season) indicated that about 61 percent of the water pumped from the SSW entered the well from the intermediate part of the aquifer, and that the remaining 39 percent entered from the deep part of the aquifer. Volatile organic compounds (VOCs) were detected in samples from most shallow and intermediate monitoring wells and from two of three supply wells, including the SSW. Detected VOCs were primarily chlorinated solvents or their degradation products. Many of the wells in which most of these VOCs were detected are located near known sites of solvent contamination that were targeted for sampling because trichloroethylene (TCE) and cis-1,2-dichloroethylene had been detected in the SSW, and several of these wells may have become contaminated at least partly because of enhanced vertical migration associated with the pumping of and (or) direct migration down deep well bores. Except for TCE in the sample from a shallow monitoring well, all detections of VOCs were at concentrations below Maximum Contaminant Levels (MCLs) set by the U.S. Environmental Protection Agency. Concentrations of all VOCs detected in the supply wells were less than one-tenth of the corresponding MCLs. However, the presence of VOCs in all but deep groundwater, including the detection of chloroform (a chlorination byproduct) in several shallow wells, indicates that groundwater in the study area commonly is affected by human activities, even to substantial depths. The only natural contaminant detected at concentrations near or above its MCL was arsenic, which has been detected at elevated concentrations across broad areas of the MRGB. Concentrations of arsenic, present primarily as arsenate, exceeded the MCL of 10 micrograms per liter (μg/L) in water from the two deep wells (one of which had the highest concentration, 35 μg/L), from one intermediate well, and from two supply wells, including the SSW. Water-quality and solid-phase data from this study are consistent with elevated arsenic concentrations in groundwater being related to pH-dependent desorption of arsenic from ferric oxyhydroxides in sediments in deep parts of the aquifer. Concentrations of nitrate ranged between 1.3 and 5.4 milligrams per liter (mg/L) in water from shallow wells screened across the water table, but were less than 0.9 mg/L in water from all but one deeper well. Nitrogen isotopes and chloride/bromide ratios for shallow wells were consistent with natural soil nitrogen. Nitrate concentrations and nitrogen isotopes indicated that denitrification is occurring at intermediate aquifer depths, and that the progress of the denitrification reaction typically is greatest for wells that include a fraction of groundwater associated with particular recharge sources or with known sites of contamination contributing organic compounds that can provide a carbon source for microbial respiration. Overall, hydrologic and chemical data from the study area indicate that young recharge is reaching the aquifer across broad areas and is migrating from shallow to intermediate depths of the aquifer as a result of mixing that is associated with human development of groundwater. Consequently, groundwater that human activities in the urban study area have affected is present at depths that are within the screened intervals of public-supply wells, resulting in detections of VOCs and implying greater vulnerability to anthropogenic contamination than might be assumed based on the dominantly old age of the regional groundwater. However, the fractions of old groundwater that public-supply wells produce substantially dilute the anthropogenic contaminants, while contributing natural contaminants (primarily arsenic) to the wells. Based on data from the SSW, vulnerability of public-supply wells to natural and anthropogenic contaminants in the area changes through time, including with seasonal changes in pumping stresses that alter the fractions of young and old water being contributed to wells.

New Mexico↗

USGS2012

Methylation of Hg downstream from the Bonanza Hg mine, Oregon

Speciation of Hg and conversion to methyl-Hg were evaluated in stream sediment, stream water, and aquatic snails collected downstream from the Bonanza Hg mine, Oregon. Total production from the Bonanza mine was >1360t of Hg, during mining from the late 1800s to 1960, ranking it as an intermediate sized Hg mine on an international scale. The primary objective of this study was to evaluate the distribution, transport, and methylation of Hg downstream from a Hg mine in a coastal temperate climatic zone. Data shown here for methyl-Hg, a neurotoxin hazardous to humans, are the first reported for sediment and water from this area. Stream sediment collected from Foster Creek flowing downstream from the Bonanza mine contained elevated Hg concentrations that ranged from 590 to 71,000ng/g, all of which (except the most distal sample) exceeded the probable effect concentration (PEC) of 1060ng/g, the Hg concentration above which harmful effects are likely to be observed in sediment-dwelling organisms. Concentrations of methyl-Hg in stream sediment collected from Foster Creek varied from 11 to 62ng/g and were highly elevated compared to regional baseline concentrations (0.11-0.82ng/g) established in this study. Methyl-Hg concentrations in stream sediment collected in this study showed a significant correlation with total organic C (TOC, R 2 =0.62), generally indicating increased methyl-Hg formation with increasing TOC in sediment. Isotopic-tracer methods indicated that several samples of Foster Creek sediment exhibited high rates of Hg-methylation. Concentrations of Hg in water collected downstream from the mine varied from 17 to 270ng/L and were also elevated compared to baselines, but all were below the 770ng/L Hg standard recommended by the USEPA to protect against chronic effects to aquatic wildlife. Concentrations of methyl-Hg in the water collected from Foster Creek ranged from 0.17 to 1.8ng/L, which were elevated compared to regional baseline sites upstream and downstream from the mine that varied from <0.02 to 0.22ng/L. Aquatic snails collected downstream from the mine were elevated in Hg indicating significant bioavailability and uptake of Hg by these snails. Results for sediment and water indicated significant methyl-Hg formation in the ecosystem downstream from the Bonanza mine, which is enhanced by the temperate climate, high precipitation in the area, and high organic matter.

Oregon↗

USGS2012

February 2012 workshop jumpstarts the Mekong Fish Monitoring Network

The Mekong River in Southeast Asia travels through a basin rich in natural resources. The river originates on the northern slope of the world's tallest mountains, the Himalaya Range, and then drops elevation quickly through steep mountain gorges, tumbling out of China into Myanmar (Burma) and the Lao People's Democratic Republic (Lao PDR). The precipitous terrain of Lao PDR and Thailand generates interest in the river and its tributaries for hydropower development. The terrain, soils, water, and climate make it one of the world's most biologically rich regions. The Mekong's bounty is again on display in the Mekong River Delta, where rice production has successfully been increased to high levels making Vietnam second only to Thailand as the world's largest rice exporters. At least 800 fish species contribute to the natural resource bounty of the Mekong River and are the basis for one of the world's most productive fisheries that provide the primary protein source to more than 50 million people. Against this backdrop of rich natural resources, the U.S. Geological Survey (USGS) is working with the consulting firm FISHBIO, colleagues from the international Delta Research and Global Observation Network (DRAGON) Institute, and a broad contingent of Southeast Asian representatives and partners from abroad to increase knowledge of the Mekong River fisheries and to develop the capacity of permanent residents to investigate and understand these fisheries resources. With the Lower Mekong Basin (LMB) region facing the likelihood of significant environmental changes as a result of both human activities and global climate change, enhancing environmental understanding is critical. To encourage cooperation among the LMB scientists and managers in the study of the Mekong River's fisheries, FISHBIO and the USGS, with generous support from the U.S. State Department, hosted a workshop in Phnom Penh, Cambodia, in February 2012. Workshop participants were from Lao PDR, Thailand, Cambodia, and Vietnam. Representatives from the governments, universities, nongovernmental organizations, and the Mekong River Commission discussed current and potential methods and mechanisms of the Mekong Fish Monitoring Network. The goals of the workshop were to determine if the Network and associated databases were of interest and value to the LMB nations, to determine if future fisheries monitoring data would be comparable among the nations, and to establish methods and an organizational structure for collaborating on future monitoring and research. The participants in this international workshop agreed that the Network would be useful but would require additional funding to secure their full participation. The USGS and FISHBIO are collaboratively seeking additional funding to expand research participation and projects in all four LMB nations. If the Network can facilitate cooperation among many fisheries researchers in the LMB, the basin would become a model of cooperative international fishery studies and would increase the understanding of a river basin rich in natural resources.

Phnom Penh↗