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USGS2012

Formation of replicating saponite from a gel in the presence of oxalate: implications for the formation of clay minerals in carbonaceous chondrites and the origin of life

The potential role of clay minerals in the abiotic origin of life has been the subject of ongoing debate for the past several decades. At issue are the clay minerals found in a class of meteorites known as carbonaceous chondrites. These clay minerals are the product of aqueous alteration of anhydrous mineral phases, such as olivine and orthopyroxene, that are often present in the chondrules. Moreover, there is a strong correlation in the occurrence of clay minerals and the presence of polar organic molecules. It has been shown in laboratory experiments at low temperature and ambient pressure that polar organic molecules, such as the oxalate found in meteorites, can catalyze the crystallization of clay minerals. In this study, we show that oxalate is a robust catalyst in the crystallization of saponite, an Al- and Mg-rich, trioctahedral 2:1 layer silicate, from a silicate gel at 60°C and ambient pressure. High-resolution transmission electron microscopy analysis of the saponite treated with octadecylammonium (n(C)=18) cations revealed the presence of 2:1 layer structures that have variable interlayer charge. The crystallization of these differently charged 2:1 layer silicates most likely occurred independently. The fact that 2:1 layer silicates with variable charge formed in the same gel has implications for our understanding of the origin of life, as these 2:1 clay minerals most likely replicate by a mechanism of template-catalyzed polymerization and transmit the charge distribution from layer to layer. If polar organic molecules like oxalate can catalyze the formation of clay-mineral crystals, which in turn promote clay microenvironments and provide abundant adsorption sites for other organic molecules present in solution, the interaction among these adsorbed molecules could lead to the polymerization of more complex organic molecules like RNA from nucleotides on early Earth.

Astrobiology↗

USGS2018

KG²B, a collaborative benchmarking exercise for estimating the permeability of the Grimsel granodiorite - Part 2: modeling, microstructures and complementary data

Measuring and modelling the permeability of tight rocks remains a challenging task. In addition to the traditional sources of errors that affect more permeable formations (e.g. sample selection, non-representative specimens, disturbance introduced during sample acquisition and preparation), tight rocks can be particularly prone to solid–fluid interactions and thus more sensitive to the methods, procedures and techniques used to measure permeability. To address this problem, it is desirable to collect, for a single material, measurements obtained by different methods and pore fluids. For that purpose, a benchmarking exercise involving 24 laboratories was organized for measuring and modelling the permeability of a single low-permeability material, the Grimsel granodiorite. The objectives of the benchmark were: (i) to compare the results for a given method, (ii) to compare the results between different methods, (iii) to analyse the accuracy of each method, (iv) to study the influence of experimental conditions (especially the nature of pore fluid), (v) to discuss the relevance of indirect methods and models and finally (vi) to suggest good practice for low-permeability measurements. To complement the data set of permeability measurements presented in a companion paper, we focus here on (i) quantitative analysis of microstructures and pore size distribution, (ii) permeability modelling and (iii) complementary measurements of permeability anisotropy and poroelastic parameters. Broad ion beam—scanning electron microscopy, micro-computerized tomography, mercury injection capillary pressure (MICP) and nuclear magnetic resonance (NMR) methods were used to characterize the microstructures and provided the input parameters for permeability modelling. Several models were used: (i) basic statistical models, (ii) 3-D pore network and effective medium models, (iii) percolation model using MICP data and (iv) free-fluid model using NMR data. The models were generally successful in predicting the actual range of measured permeability. Statistical models overestimate the permeability because they do not adequately account for the heterogeneity of the crack network. Pore network and effective medium models provide additional constraints on crack parameters such as aspect ratio, aperture, density and connectivity. MICP and advanced microscopy techniques are very useful tools providing important input data for permeability estimation. Permeability measured—orthogonal to foliation is lower that—parallel to foliation. Combining the experimental and modelling results provide a unique and rich data set.

Geophysical Journal International↗

USGS2012

Variation in clinical phenotype of human infection among genetic groups of Blastomyces dermatitidis

Background. Blastomyces dermatitidis, the etiologic agent of blastomycosis, has 2 genetic groups and shows varied clinical presentation, ranging from silent infections to fulminant respiratory disease and dissemination. The objective of this study was to determine whether clinical phenotype and outcomes vary based on the infecting organism's genetic group. Methods. We used microsatellites to genotype 227 clinical isolates of B. dermatitidis from Wisconsin patients. For each isolate, corresponding clinical disease characteristics and patient demographic information were abstracted from electronic health records and Wisconsin Division of Health reportable disease forms and questionnaires. Results. In univariate analysis, group 1 isolates were more likely to be associated with pulmonary-only infections ( P < .0001) and constitutional symptoms such as fever ( P < .0001). In contrast, group 2 isolates were more likely to be associated with disseminated disease ( P < .0001), older patient age ( P < .0001), and comorbidities ( P = .0019). In multivariate analysis, disease onset to diagnosis of >1 month ( P < .0001), older age at diagnosis ( P < .0001), and current smoking status ( P = .0001) remained predictors for group 2 infections. Conclusions. This study identified previously unknown associations between clinical phenotype of human infection and genetic groups of B. dermatitidis and provides a framework for further investigations of the genetic basis for virulence in B. dermatitidis .

Journal of Infectious Diseases↗

USGS2020

Gas-liquid chromatographic determination of kepone in field-collected avian tissues and eggs

A procedure is described for determining Kepone (decachlorooctahydro-l,3,4-metheno-2H-cyclobuta [cd]pentalene-2-one) residues in avian egg, liver, and tissue. Samples were extracted with benzene-isopropanol, and the extract was cleaned up with fuming H 2 SO 4 -concentrated H 2 SO 4 . Kepone was separated from organochlorine pesticides and polychlorinated biphenyls on a Florisil column and analyzed by electron capture gas-liquid chromatography GLC). The average recovery from spiked tissues was 86%. The analyses performed on 14 bald eagle carcasses and livers, 3 bald eagle eggs, and 14 osprey eggs show measurable levels which indicate that Kepone accumulates in the tissues of fish-eating birds. Residues were confirmed by GLC-mass spectrometry.

Journal of the Association of Official Analytical ↗

USGS2020

Gas-liquid chromatographic and gas-liquid chromatographic-mass spectrometric determination of fenvalerate and permethrin residues in grasshoppers and duck tissue samples

A procedure is described for determining fenvalerate and permethrin residues in grasshoppers and duck tissues. Samples are Soxhlet-extracted with hexane and cleaned up by gel permeation chromatography with an in-line alumina column. Samples are analyzed by gas-liquid chromatography with electron capture detection, and confirmed by gas-liquid chromatography-mass spectrometry. The average recovery from fortified tissues was 97%.

Journal of the Association of Official Analytical ↗

USGS2020

Combined extraction-cleanup column chromatographic procedure for determination of dicofol in avian eggs

Dicofol in avian eggs was completely oxidized to dichlorobenzophenone (DCBP) when a hexane Soxhlet extraction procedure was used. This degradation did not occur with other avian tissues (muscle and liver). For this reason, a combined extraction-cleanup column chromatographic procedure, without added heat, was developed for the determination of dicofol in avian eggs. Homogenized subsamples of eggs were mixed with sodium sulfate, and the mixture was added as the top layer on a column prepacked with Florisil. The dicofol and other compounds of interest were then eluted with ethyl etherhexane. The extracts, relatively free from lipids, were quantitated on a gas chromatograph equipped with a 63Ni electron-capture detector and a methyl silicone capillary column. Recoveries from chicken eggs, fortified with dicofol and other DDT-related compounds, averaged 96%. Analysis of eggs of eastern screech-owls, fed a meat diet containing 10 ppm technical Kelthane, showed that both dicofol and DCBP were present. Results were confirmed by gas chromatography/ mass spectrometry. This method is rapid and reliable, involves a minimum of sample handling, and is well suited for high volume determination of dicofol in eggs and other avian tissues .

Journal of the Association of Official Analytical ↗

USGS2020

Rediscovery of the horseshoe shrimp Lightiella serendipita Jones, 1961 (Cephalocarida: Hutchinsoniellidae) in San Francisco Bay, California, USA, with a key to the worldwide species of Cephalocarida

Lightiella serendipita Jones, 1961 was first discovered in San Francisco Bay, California in 1953, but it had not been observed since 1988. In 2017, a total of 13 adult L. serendipita specimens were found as part of a study in central San Francisco Bay, nearly doubling the total number of specimens ever collected. We measured vertical distribution of macroinvertebrates and environmental variables, including grain size and chemical composition of sediment samples, to evaluate potential features associated with the habitat of the species. Specimens were generally found in sediments with low organic matter (1.7–3%), high sulfate concentrations (594.6–647 ppm SO 4 ), fine grain size (12.8–36.2% sand, 35.6–58% silt, 22.8–37.6% clay) and were mostly found in deep core sections (4–10 cm). Specimens were also consistently observed in cores containing tube-forming Polychaeta (i.e., Sabaco elongatus (Verrill, 1873) and Capitellidae), suggesting L. serendipita may have a commensal relationship with sedentary polychaetes, as do other cephalocaridans such as Lightiella incisa Gooding, 1963 . We provide a scanning electron micrograph of L. serendipita and the first complete key to the species in class Cephalocarida to help elucidate the taxonomy of this rare crustacean taxon. The perceived absence of L. serendipita in previous surveys of the Bay may be attributable to its rarity; however, additional research is needed to fully understand habitat requirements and population size of this unique endemic species.

California↗

USGS2023

The smaller, the better? First evaluation of growth and mortality in crayfish internally tagged with p-Chips

Small-bodied aquatic animals present a challenge to researchers seeking to uniquely mark individuals for scientific study. Microtransponder tags, such as p-Chips, represent the smallest electronic animal tags available to meet this need. The use of p-Chips to tag freshwater crayfishes, however, has not been explored. The goal of this study, therefore, was to determine the effects of p-Chip tagging on growth and survival of crayfishes in a controlled laboratory environment. We also investigated potential influences from variables such as sex, reproductive form, number of molt events, and crayfish size on mortality. We internally tagged individuals of the woodland crayfish Faxonius hylas (Faxon, 1890) (12.2–26.6 mm carapace length; CL) with either one p-Chip (single-tag) or one p-Chip and one visual implant elastomer tag (double-tagged) and observed the effects over a period of 90 days. Survival probability over time was not statistically different ( P > 0.05) among tagging groups, sex, and reproductive form. Survival rates were similar across all tagging groups, with 75% in the control group, 77% in the double-tagged group, and 78% in the single-tag group. A strong correlation, however, was observed between survival and the number of molt events. Additionally, there was a negative correlation between survival and crayfish size (CL), indicating a higher risk of mortality for larger individuals. There were no statistically significant differences in growth in CL ( P = 0.30) or mass ( P = 0.19) among the tagging groups. We conclude that p-Chips are a viable tagging option for the study of crayfishes given their size, readability, and retention through molting cycles. We recommend that future studies repeat this experiment using smaller individuals to determine the minimum crayfish size compatible with p-Chip tagging. It is also important to test p-Chips with other crayfish species and compare the growth and mortality of crayfish tagged with p-Chips in natural habitats.

Journal of Crustacean Biology↗

USGS2018

The extreme space weather event in September 1909

We evaluate worldwide low-latitude auroral activity associated with the great magnetic storm of September 1909 for which a minimum Dst value of −595 nT has recently been determined. From auroral observations, we calculate that the equatorward boundary of the auroral oval in the 1909 event was in the range from 31°–35° invariant latitude (assuming auroral height of 400 km) to 37°–38° (800 km). These locations compare with satellite-based observations of precipitating auroral electrons down to 40° magnetic latitude for the March 1989 storm with its comparable minimum Dst value of −589 nT. According to Japanese auroral records, bluish colour started to appear first, followed by reddish colour. The colour change can be attributed to the transition from sunlit aurora to the usual low-latitude reddish aurora. Telegraph communications were disrupted at mid/low latitudes, coincidently with the storm main phase and the early recovery phase. The telegraphic disturbances were caused by geomagnetically induced currents associated with the storm-time ring current and substorm current wedge. From the calculated CME energy ─ based on the 24.75 hr separation between the flare-associated magnetic crochet and the geomagnetic storm sudden commencement and interplanetary conditions inferred from geomagnetic data ─ and consideration of the ∼−40 nT crochet amplitude, we estimated that the soft X-ray class of the 24 September 1909 flare was ≥X10. As is the case for other extreme storms, strong/sharp excursions in the horizontal component of the magnetic field observed at low-latitude magnetic stations were coincident with the observation of low-latitude aurora.

Monthly Notices of the Royal Astronomical Society↗

USGS1998

Petrochemistry of late miocene peraluminous silicic volcanic rocks from the Morococala field, Bolivia

Late Miocene peraluminous volcanic rocks of the Morococala field, Bolivia, define a layered stratigraphy of basal andalusite-, biotite- (± muscovite)-bearing rhyolite tuffs (AR), overlain by cordierite-, biotite-bearing rhyolite tuffs (CR), and capped by biotite-bearing quartz latite tuffs, lavas, and late domal flows (QL). Mineral and whole-rock compositions become more evolved from top to bottom, with differentiation reflected by decreasing Ca, Ba, Mg, Fe, and rare earth elements (REE) versus increasing F, Na/K, and aluminosity from QL to AR. Mineral, whole-rock, and glass inclusion compositions are consistent with derivation of all three rock types from a single stratified magma reservoir, but age and spatial relations between the three units make this unlikely. Genesis of the QL involved biotite-dehydration melting of an aluminous source at T > 750°C and P ≥ = 4–6 kbar. If not co-magmatic with QL, the other units were generated primarily by muscovite-dehydration melting at T = 730–750°C and P ≥ = 3.5–4.5 kbar for CR, and T ≤ = 750°C for AR with pre-eruptive residence at low pressure (1.5–3.0 kbar). Low hematite contents (X Hem ≤ = 0.06) of ilmenite grains in AR, CR, and early grains (as inclusions in plagioclase and sanidine cores) in QL indicate reduced conditions imposed by a graphite-bearing source. Compositional variability among texturally later oxides (ilmenite with X Hem = 0.06–0.50, primary magnetite), however, apparently records progressive increases in pre-eruptive f(O 2 ) in QL. Plagioclase-melt equilibria and electron microprobe analysis difference for quartz-hosted glass inclusions suggest pre-eruptive melt H 2 O contents ≥ = 5–7 wt % for the AR, ∼4–6 wt % for the CR, and ∼3–5 wt % for the QL.

Journal of Petrology↗

USGS1969

Coexisting amphiboles from blueschist facies metamorphic rocks

Four pairs of associated calcic and sodic amphiboles from blueschist facies metamorphic rocks were analyzed with the electron microprobe and studied by single-crystal X-ray diffraction techniques. Except for ranges in the ratios Mg/(Mg+Fe) and Fe 3+ /(Fe 3+ +Al+Ti), the sodic amphiboles are similar in chemical composition. The amount of calcium in the M(4)-site ranges only from 0·18 to 0·21 ion per formula unit. The calcic amphiboles, in addition to a range in Mg/(Mg+Fe), vary in Na/(Na+Ca) ratio (0·29–0·48). Three of the calcic amphiboles contain less than 1·5 calcium ions per formula unit, indicating a significant solid solution of sodic amphibole components in the calcic amphibole phase. The a and b unit-cell parameters of the calcic amphiboles decrease with increased content of the sodic component.

Journal of Petrology↗

USGS1973

Oxidation during magmatic differentiation, Finnmarka Complex, Oslo area, Norway: Part 2, the mafic silicates

Electron-microprobe analyses are presented for pyroxene, amphibole, and biotite from monzonite, granodiorite, and granite at Finnmarka, Norway. Compositional trends measured in biotite, present in all three rock types, and in amphibole, present in the monzonite and granodiorite, are markedly atypical and are interpreted as reflecting crystallization under progressively more oxidizing conditions. The average Fe/Fe + Mg for biotites from successively more silicic rock types changes from 0.64 → 0.35 → 0.28, and for amphiboles changes from 0.58 in the monzonite to 0.29 in the granodiorite. Analyses of selected areas within amphibole grains in the granodiorite show marked chemical variations, although single-crystal X-ray photographs are sharp and do not reveal multiple phases. On the basis of 33 such analyses, four coupled substitutions are identified as operative; the most unusual finding is the relation of 1 Ti cation to 4 Al IV cations in the unit cell. Variations within individual amphibole grains of the granodiorite resemble changes noted in evolution of amphibole composition from monzonite to granodiorite and are interpreted as reflecting progressive oxidation. Consideration of these data for the mafic silicates, data for the opaque oxides, and the extensive formation of sphene in the granodiorite, has allowed development of schematic reactions and an overall picture of magmatic environment and evolution at Finnmarka. Crystallization apparently took place at PH 2 o of 1000 bars or less and a temperature of about 700 °C. The trend of oxidation during differentiation is more extreme than any heretofore reported. Amphiboles, as well as biotites, may participate in oxidation reactions and may reflect the oxidation-reduction processes that occurred during magmatic evolution.

Oslo↗

USGS2022

The geochemical and textural transition between the Reef Package and its hanging wall, Stillwater Complex, Montana, USA

The highest grade Pd-Pt deposit on Earth, the J-M Reef, is hosted in coarse-grained to pegmatoidal cumulates called the Reef Package. Decades of mine development of the J-M Reef have revealed that a distinct discontinuity in rock fabric marks the top of the rock unit that hosts economic-grade sulfide mineralization. Mine geologists refer to this discontinuity as the hanging wall contact. This contact is the top of the Reef Package and is always locatable—either by the change in rock fabric or by distinctive hanging wall textures of silicate minerals—even when the reef sulfide mineralization is absent. This rather subtle textural feature is used reliably by mine geologists to follow the Reef during exploration and mine development. Although some high tenor sulfides (>1000 ppm Pd in 100% sulfide) are found sporadically in the hanging wall cumulates, these accumulations are too small to be economically viable. We present quantitative rock fabric data for four Reef Package and hanging wall intersections collected by electron back-scattered diffraction (EBSD). Plagioclase fabrics in the hanging wall are characterized by low variance in grain sizes and a strong point maximum concentration of (010) and a perpendicular girdle distribution of [100] consistent with an axial B-type fabric. These fabrics are indicative of either compaction of the crystal mush or crystal settling of nucleated crystals, the bulk magma in a chamber. Conversely, the fabrics of the Reef Package show higher variance grain in size distributions and weak to undeveloped preferred orientation of plagioclase crystals that did not undergo significant alignment or textural equilibration of plagioclase grains. The absence of foliation in the Reef Package stands in contrast both to hanging wall fabrics and to other reported EBSD datasets of plagioclase crystals orientations from the Bushveld Complex, the Skaergaard Intrusion, and the Rum Intrusion. Furthermore, plagioclase crystal size distributions for the Reef Package show flatter slopes and convex profiles with fewer crystals at small size fractions indicating the dissolution of small crystals during partial melting and textural coarsening (i.e . Ostwald ripening) and crystal growth. Crystal growth was favored over the nucleation of new crystals during prolonged interaction with a hot infiltrating melt into the resident mush resulting in the coarse-grained textures of the Reef Package cumulates. The hanging wall contact represents a boundary between partially remelted crystal mush of the Reef Package, where sulfide mineralization formed and accumulated, and an overlying essentially barren cumulate pile. The hanging wall cumulates formed following the cessation of footwall erosion and the resumption of crystal accumulation by normal magma chamber processes.

Montana↗

USGS2022

The Shallow Magmatic Plumbing System of the Deccan Traps, Evidence from Plagioclase Megacrysts and Their Host Lavas

We investigate the shallow plumbing system of the Deccan Traps Large Igneous Province using rock and mineral data from Giant Plagioclase Basalt (GPB) lava flows from around the entire province, but with a focus on the Saurashtra Peninsula, the Malwa Plateau, and the base and top of the Western Ghats (WG) lava pile. GPB lavas in the WG typically occur at the transition between chemically distinct basalt formations. Most GPB samples are evolved basalts, with high Fe and Ti contents, and show major and trace elements and Sr-Nd-Pb isotopic compositions generally similar to those of previously studied Deccan basalts. Major element modeling suggests that high-Fe, evolved melts typical of GPB basalts may derive from less evolved Deccan basalts by low-pressure fractional crystallization in a generally dry magmatic plumbing system. The basalts are strongly porphyritic, with 6–25% of mm- to cm-sized plagioclase megacrysts, frequently occurring as crystal clots, plus relatively rare olivine and clinopyroxene. The plagioclase crystals are mostly labradoritic, but some show bytownitic cores (general range of anorthite mol%: 78–55). A common feature is a strong Fe enrichment at the plagioclase rims, indicating interaction with an Fe-rich melt similar to that represented by the matrix compositions (FeOt up to 16–17 wt%). Plagioclase minor and trace elements and Sr isotopic compositions analyzed by laser ablation inductively coupled plasma mass spectrometry show evidence of a hybrid and magma mixing origin. In particular, several plagioclase crystals show variable 87 Sr/ 86 Sr i , which only partially overlaps with the 87 Sr/ 86 Sr i of the surrounding matrix. Diffusion modeling suggests residence times of decades to centuries for most plagioclase megacrysts. Notably, some plagioclase crystal clots show textural evidence of deformation as recorded by electron back-scatter diffraction analyses and chemical maps, which suggest that the plagioclase megacrysts were deformed in a crystal-rich environment in the presence of melt. We interpret the plagioclase megacrysts as remnants of a crystal mush originally formed in the shallow plumbing system of the Deccan basalts. In this environment, plagioclase acquired a zoned composition due to the arrival of chemically distinct basaltic magmas. Prior to eruption, a rapidly rising but dense Fe-rich magma was capable of disrupting the shallow level crystal mush, remobilizing part of it and carrying a cargo of buoyant plagioclase megacrysts. Our findings suggest that basaltic magmas from the Deccan Traps, and possibly from LIPs in general, are produced within complex transcrustal magmatic plumbing systems with widespread crystal mushes developed in the shallow crust.

Journal of Petrology↗

USGS2022

Barometers behaving badly: Assessing the influence of analytical and experimental uncertainty on clinopyroxene thermobarometry calculations at crustal conditions

The composition of clinopyroxene and clinopyroxene-liquid (Cpx-Liq) pairs are frequently used to calculate crystallization/equilibration pressures in igneous systems. While canonical uncertainties are often assigned to calculated pressures based on fits to calibration or test datasets, the sources of these uncertainties (and thus ways to reduce them) have not been rigorously assessed. We show that considerable uncertainties in calculated pressures arise from analytical error associated with Electron Probe Microanalyser (EPMA) measurements of Cpx. Specifically, low X-ray counts during analysis of elements with concentrations <1 wt% resulting from insufficient count times and/or low beam currents yield highly imprecise measurements (1σ errors of 10–40% for Na 2 O).

Journal of Petrology↗

USGS2007

Observations of magnetite dissolution in poorly drained soils

Dissolution of strongly magnetic minerals is a common and relatively rapid phenomenon in poorly drained soils of the central United States, resulting in low magnetic susceptibility (MS). Low Eh reducing conditions are primarily responsible for magnetic mineral dissolution; a process likely mediated by iron-reducing bacteria in the presence of soil organic matter. Based on transects across drainage sequences from nine sites, natural magnetic minerals (>5 ??m) extracted from surface soil consist of 54% ?? 18% magnetite, 21% ?? 11% titanomagnetite, and 17% ?? 14% ilmenite. Magnetite and titanomagnetite dissolution, assessed by scanning electron microscopy on a 0-to-3 scale, inversely correlates with surface soil MS (r = 0.53), a proxy for soil drainage at studied transects. Altered magnetite typically displays etch pits <1-??m diameter, whereas titanomagnetite exhibits a latticework pattern of alteration along planes of crystallographic weakness (<1-??m spacing). Ilmenite, containing solely ferrous iron, is unaffected by reducing conditions, portraying mainly smooth-textured grains. Magnetic fractions (>5 ??m) include 26% ?? 18% anthropogenic fly ash that also exhibits greater dissolution in low MS soils (r = 0.38), indicating detectable alteration can occur within 150 years in low Eh soils. Laboratory induced reduction of magnetite, titanomagnetite, and magnetic fly ash, with a citrate-bicarbonate- dithionite solution, resulted in dissolution textures similar to those of in situ soil particles. Although experiments indicate that reductive dissolution of magnetite can occur abiotically under extreme conditions, bacteria likely play an important role in the natural environment. ?? 2007 Lippincott Williams & Wilkins, Inc.

Soil Science↗

USGS1997

Desulfuromonas thiophila sp. nov., a new obligately sulfur-reducing bacterium from anoxic freshwater sediment

A mesophilic, acetate-oxidizing, sulfur-reducing bacterium, strain NZ27(T), was isolated from anoxic mud from a freshwater sulfur spring. The cells were ovoid, motile, and gram negative. In addition to acetate, the strain oxidized pyruvate, succinate, and fumarate. Sulfur flower could be replaced by polysulfide as an electron acceptor. Ferric nitrilotriacetic acid was reduced in the presence of pyruvate; however, this reduction did not sustain growth. These phenotypic characteristics suggested that strain NZ27(T) is affiliated with the genus Desulfuromonas. A phylogenetic analysis based on the results of comparative 16S ribosomal DNA sequencing confirmed that strain NZ27(T) belongs to the Desulfuromonas cluster in the recently proposed family 'Geobacteraceae' in the delta subgroup of the Proteobacteria. In addition, the results of DNA-DNA hybridization studies confirmed that strain NZ27(T) represents a novel species. Desulfuromonas thiophila, a name tentatively used in previous publications, is the name proposed for strain NZ27(T) in this paper.

International Journal of Systematic Bacteriology↗

USGS2004

JuxtaView - A tool for interactive visualization of large imagery on scalable tiled displays

JuxtaView is a cluster-based application for viewing ultra-high-resolution images on scalable tiled displays. We present in JuxtaView, a new parallel computing and distributed memory approach for out-of-core montage visualization, using LambdaRAM, a software-based network-level cache system. The ultimate goal of JuxtaView is to enable a user to interactively roam through potentially terabytes of distributed, spatially referenced image data such as those from electron microscopes, satellites and aerial photographs. In working towards this goal, we describe our first prototype implemented over a local area network, where the image is distributed using LambdaRAM, on the memory of all nodes of a PC cluster driving a tiled display wall. Aggressive pre-fetching schemes employed by LambdaRAM help to reduce latency involved in remote memory access. We compare LambdaRAM with a more traditional memory-mapped file approach for out-of-core visualization. ?? 2004 IEEE.

Conference Paper↗