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Aquatic–terrestrial linkages provide novel opportunities for freshwater ecologists to engage stakeholders and inform riparian management

Studies of aquatic–terrestrial ecosystem linkages explore the mechanisms by which components of one ecosystem, such as the aquatic insect community in a stream, directly affect components of an adjacent ecosystem, such as the density and diversity of riparian predators. On a human level, research into these linkages allows freshwater ecologists to form novel collaborations with stakeholders and other interest groups by emphasizing shared interests. To highlight this point, we use 3 case studies as examples of how aquatic–terrestrial linkages research can be leveraged to achieve multifaceted goals of improving riparian and freshwater management, engaging stakeholders, and advancing ecological understanding. In the 1 st case study, we describe a project in which consideration of the complex life histories of aquatic insects could have led to more effective outcomes for riparian bird restoration. The 2 nd case study provides an example of how studying contaminant transport through ecological subsidies has been incorporated into programs for contaminant management. In the 3 rd case, we use a study of terrestrial vertebrates feeding on adult aquatic insects to show how research into aquatic–terrestrial subsidies connects freshwater ecologists, youth groups, and commercial river guides. By focusing on how in-stream processes propagate onto land through ecological subsidies, we argue that freshwater ecologists also gain a platform for communicating their science to riparian managers and the public, which can improve the potential for stream and riparian co-management and restoration success.

Freshwater Science↗

FORUM: Effective management of ecological resilience – are we there yet?

Ecological resilience is developing into a credible paradigm for policy development and environmental management for preserving natural capital in a rapidly changing world. However, resilience emerges from complex interactions, limiting the translation of theory into practice. Main limitations include the following: (i) difficulty in quantification and detection of changes in ecological resilience, (ii) a lack of empirical evidence to support preventative or proactive management and (iii) difficulties in managing processes operating across socio-ecological systems that vary in space and time. We highlight recent research with the potential to address these limitations including new and/or improved indicators of resilience and tools to assess scale as a driver of resilience. Synthesis and applications . Effective resilience-based management must be adaptive in nature. To support this, we propose an operational model using resilience-based iterative management actions operating across scales.

Journal of Applied Ecology↗

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Species of conservation concern

The ecosystems of the Williston Basin provide direct and indirect benefits to society. These benefits include carbon sequestration, flood control, nutrient rich soils for agricultural productivity, and habitat for wildlife. This chapter’s main focus is on the effects of energy development on species that occupy the ecosystems in the Williston Basin. We compiled a list of documented species of conservation concern that are of most interest to Federal regulators and resource managers. Species of concern were either listed as endangered or threatened under the Endangered Species Act or listed by States as species of concern in Natural Heritage Program checklists or State Wildlife Action Plans. All told, we determined that 357 species of concern likely occupy the Williston Basin. These species represented seven different taxonomic groups: plants (native and nonnative), terrestrial invertebrates, birds, mammals, reptiles and amphibians, and fish and mussels. We reviewed the existing scientific information pertaining to potential effects of energy development on these taxonomic groups. Currently, little is known about the abundance and distribution of many of these species. But some information exists that may be useful in predicting the potential effects of energy development on certain taxonomic groups. Most of this information has been developed through scientific research focused on effects to mammal and bird populations. Effects to other taxonomic groups seems to be understudied. In general, it seems that disturbances and modifications associated with development have the potential to negatively affect a wide range of species; however, many studies produce uncertain results because they are not designed to compare populations before and after energy development takes place. Most of these studies also do not monitor resources over multiple years and thus cannot detect population trends. Likewise, there are few examples of landscape-scale assessments of the cumulative effects of energy development that could be used for species or habitat management purposes. We suggest that more research needs to be completed to measure potential effects to a broad range of species in multiple taxonomic groups. This may require also developing some understanding about the basic ecology of many of the species covered in this report. In concert with this more basic research, we also suggest that more comprehensive assessments of potential negative cumulative effects across the Williston Basin should be developed in an effort to guide more strategic management of biological resources.

Montana, North Dakota, South Dakota↗

QFASAR: Quantitative fatty acid signature analysis with R

Knowledge of predator diets provides essential insights into their ecology, yet diet estimation is challenging and remains an active area of research. Quantitative fatty acid signature analysis (QFASA) is a popular method of estimating diet composition that continues to be investigated and extended. However, software to implement QFASA has only recently become publicly available. I summarize a new R package, qfasar , for diet estimation using QFASA methods. The package also provides functionality to evaluate and potentially improve the performance of a library of prey signature data, compute goodness-of-fit diagnostics, and support simulation-based research. Several procedures in the package have not previously been published. qfasar makes traditional and recently published QFASA diet estimation methods accessible to ecologists for the first time. Use of the package is illustrated with signature data from Chukchi Sea polar bears and potential prey species.

Methods in Ecology and Evolution↗

Bridging social and ecological science to create spatially-explicit models of human-caused mortality of carnivores

Research indicates that human-caused mortality (HCM) is a key factor limiting numerous large carnivore populations. However, efforts to represent HCM in spatially explicit models have generally been limited in scope—often relying on proxies, such as road or human density. Yet such efforts fail to distinguish different sources of HCM, which can arise from different antecedent processes. We offer a systems-based conceptual framework for understanding the antecedents of HCMs that is grounded in theory from the social and behavioral sciences. Specifically, we first explain how HCMs are usefully distinguished into four types (e.g., accidental, harvest, illicit, control actions), then discuss how these different types tend to be driven by different sets of psychological and sociopolitical processes. We contend that improvements in understanding the spatial variation in HCMs would rise from more explicit attention to the various antecedent processes that precede each mortality type.

Ambio↗

The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes

In this review article, we trace the history of events leading to the development of individual-based models (IBMs) to represent aquatic organisms in rivers and streams. As a metaphor, we present this history as a series of confluences between individual scientists (tributaries) sharing ideas. We describe contributions of these models to science and management. One iconic feature of river IBMs is the linkage between flow and the physical habitat experienced by individual animals, and the first model that focused on this linkage is briefly described. We continue by reviewing the contributions of riverine IBMs to eight broad areas of scientific inquiry. The first four areas include research to understand 1) the effects of flow regimes on fish populations, 2) species interactions (e.g., size-mediated competition and predation), 3) fish movement and habitat selection, and 4) contaminant and water quality impacts on populations. Next, we review research using IBMs 5) to guide conservation biology of imperiled taxa through population viability analysis, including research 6) to understand river fragmentation by dams and reconnection, 7) to understand genetic outcomes for riverine metapopulations, and 8) to anticipate the future effects of temperature and climate change. This rich body of literature has contributed to both theoretical insights (e.g., about animal behavior and life history) and applied insights (e.g., population-level effects of flow regimes, temperature, and the effects of hydropower and other industries that share rivers with aquatic biota). We finish by exploring promising branches that lie ahead in the braided, downstream channel that represents future river modeling research.

Ecological Modelling↗

Assigning king eiders to wintering regions in the Bering Sea using stable isotopes of feathers and claws

Identification of wintering regions for birds sampled during the breeding season is crucial to understanding how events outside the breeding season may affect populations. We assigned king eiders captured on breeding grounds in northern Alaska to 3 broad geographic wintering regions in the Bering Sea using stable carbon and nitrogen isotopes obtained from head feathers. Using a discriminant function analysis of feathers obtained from birds tracked with satellite transmitters, we estimated that 88 % of feathers were assigned to the region in which they were grown. We then assigned 84 birds of unknown origin to wintering regions based on their head feather isotope ratios, and tested the utility of claws for geographic assignment. Based on the feather results, we estimated that similar proportions of birds in our study area use each of the 3 wintering regions in the Bering Sea. These results are in close agreement with estimates from satellite telemetry and show the usefulness of stable isotope signatures of feathers in assigning marine birds to geographic regions. The use of claws is currently limited by incomplete understanding of claw growth rates. Data presented here will allow managers of eiders, other marine birds, and marine mammals to assign animals to regions in the Bering Sea based on stable isotope signatures of body tissues. ?? Inter-Research 2008.

Marine Ecology Progress Series↗

Novel ecological and climatic conditions drive rapid adaptation in invasive Florida Burmese pythons

Invasive species provide powerful in situ experimental systems for studying evolution in response to selective pressures in novel habitats. While research has shown that phenotypic evolution can occur rapidly in nature, few examples exist of genome‐wide adaptation on short ‘ecological’ timescales. Burmese pythons ( Python molurus bivittatus ) have become a successful and impactful invasive species in Florida over the last 30 years despite major freeze events that caused high python mortality. We sampled Florida Burmese pythons before and after a major freeze event in 2010 and found evidence for directional selection in genomic regions enriched for genes associated with thermosensation, behavior, and physiology. Several of these genes are linked to regenerative organ growth, an adaptive response that modulates organ size and function with feeding and fasting in pythons. Independent histological and functional genomic datasets provide additional layers of support for a contemporary shift in invasive Burmese python physiology. In the Florida population, a shift towards maintaining an active digestive system may be driven by the fitness benefits of maintaining higher metabolic rates and body temperature during freeze events. Our results suggest that a synergistic interaction between ecological and climatic selection pressures have driven adaptation in Florida Burmese pythons, demonstrating the often‐overlooked potential of rapid adaptation to influence the success of invasive species.

Florida↗

EAARL submarine topography: Biscayne National Park

This lidar-derived submarine topography map was produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs for the purposes of habitat mapping, ecological monitoring, change detection, and event assessment (for example: bleaching, hurricanes, disease outbreaks). As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring water depth and conducting cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to managers of coastal tropical habitats.

Florida↗

EAARL topography: Dry Tortugas National Park

This lidar-derived submarine topography map was produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs for the purposes of habitat mapping, ecological monitoring, change detection, ad event assessment (for example: bleaching, hurricanes, disease outbreaks). As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring water depth and conducting cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to managers of coastal tropical habitats.

Florida↗

Global research priorities for sea turtles: Informing management and conservation in the 21st century

Over the past 3 decades, the status of sea turtles and the need for their protection to aid population recovery have increasingly captured the interest of government agencies, non-governmental organisations (NGOs) and the general public worldwide. This interest has been matched by increased research attention, focusing on a wide variety of topics relating to sea turtle biology and ecology, together with the interrelations of sea turtles with the physical and natural environments. Although sea turtles have been better studied than most other marine fauna, management actions and their evaluation are often hindered by the lack of data on turtle biology, human–turtle interactions, turtle population status and threats. In an effort to inform effective sea turtle conservation a list of priority research questions was assembled based on the opinions of 35 sea turtle researchers from 13 nations working in fields related to turtle biology and/or conservation. The combined experience of the contributing researchers spanned the globe as well as many relevant disciplines involved in conservation research. An initial list of more than 200 questions gathered from respondents was condensed into 20 metaquestions and classified under 5 categories: reproductive biology, biogeography, population ecology, threats and conservation strategies.

Endangered Species Research↗

A high-resolution bioclimate map of the world: a unifying framework for global biodiversity research and monitoring

Aim: To develop a novel global spatial framework for the integration and analysis of ecological and environmental data. Location: The global land surface excluding Antarctica. Methods: A broad set of climate-related variables were considered for inclusion in a quantitative model, which partitions geographic space into bioclimate regions. Statistical screening produced a subset of relevant bioclimate variables, which were further compacted into fewer independent dimensions using principal components analysis (PCA). An ISODATA clustering routine was then used to classify the principal components into relatively homogeneous environmental strata. The strata were aggregated into global environmental zones based on the attribute distances between strata to provide structure and support a consistent nomenclature. Results: The global environmental stratification (GEnS) consists of 125 strata, which have been aggregated into 18 global environmental zones. The stratification has a 30 arcsec resolution (equivalent to 0.86 km2 at the equator). Aggregations of the strata were compared with nine existing global, continental and national bioclimate and ecosystem classifications using the Kappa statistic. Values range between 0.54 and 0.72, indicating good agreement in bioclimate and ecosystem patterns between existing maps and the GEnS. Main conclusions: The GEnS provides a robust spatial analytical framework for the aggregation of local observations, identification of gaps in current monitoring efforts and systematic design of complementary and new monitoring and research. The dataset is available for non-commercial use through the GEO portal (http://www.geoportal.org).

Global Ecology and Biogeography↗

Trait-based approaches in the analysis of stream fish communities

Species traits are used to study the functional organization of fish communities for a range of reasons, from simply reducing data dimensionality to providing mechanistic explanations for observed variation in communities. Ecological and life history traits have been used to understand the basic ecology of fishes and predict (1) species and community responses to habitat and climate alteration, and (2) species extinction, species invasion, and community homogenization. Many approaches in this arena have been developed during the past three decades, but they often have not been integrated with related ecological concepts or subdisciplines, which has led to confusion in terminology. We review 102 studies of species traits and then summarize patterns in traits being used and questions being addressed with trait-based approaches. Overall, studies of fish–habitat relationships that apply habitat templates and hierarchical filters dominate our sample; the most frequently used traits are related to feeding. We define and show the relationships among key terms such as fundamental and realized niches; functional traits, performance, and fitness; tactic, trait-state, syndromes, and strategies; and guilds and functional groups. We propose accelerating research to (1) quantify trait plasticity, (2) identify traits useful for testing ecological hypotheses, (3) model habitat and biotic interactions in communities while explicitly accounting for phylogenetic relationships, (4) explore how traits control community assembly, and (5) document the importance of traits in fish– community responses to anthropogenic change and in delivering ecosystem services. Further synthesis of these topics is still needed to develop concepts, models, and principles that can unify the disparate approaches taken in trait-based analysis of fish communities, link fish community ecology to general community ecology, and inform sustainable management of ecosystems.

Conference Paper↗

Population ecology of Roosevelt elk: Conservation and management in Redwood National and State Parks. Butch Weckerly. 2017. University of Nevada Press, Reno, Nevada, USA. 224 pp. $54.95 hardback. ISBN 978- 1943859504.

Long-term research on large ungulate populations typically conjures perceptions of extensive (and expensive) animal capture and telemetry work, and subsequent advanced modeling of resource selection and population dynamics that inform management decisions. In contrast, studies lacking a telemetry component are often limited to animal behavior or natural history. Although compelling from a standpoint of advancing understanding of ecological and evolutionary processes, results from the latter can be unfairly labeled as esoteric because they are not easily transferable to resource managers or may not provide exceptional interest to a general public drawn to these charismatic megafuana. Such dichotomies are not predetermined, however, because study conditions exist where dedicated academic researchers on tight budgets can achieve results relevant to ecology and management.

Journal of Wildlife Management↗

Disparate data streams together yield novel survival estimates of Alaska-breeding Whimbrels

Survival estimates are critical components of avian ecology. In well-intentioned efforts to maximize the utility of one's research, survival estimates often derive from data that were not originally collected for survival assessments, and such post hoc analyses may include unintentional biases. We estimated the survival of Whimbrels captured and marked at two breeding sites in Alaska using divergent data streams that in isolation were subject to methodological biases. Although both capture sites were chosen to study the migration ecology of Alaska-breeding Whimbrels, maximizing the conservation value of the data we collected was obviously desirable. We used multi-year telemetry information to infer survival from one site (Colville River) and mark-resight techniques to estimate survival from a second site (Kanuti River). At the Colville River, we could not feasibly include a control group of birds to assess potential survival effects of externally mounted transmitters, while at Kanuti River we were unable to accurately account for potential emigration events because we used resightings alone. We integrated these datasets in a Bayesian hierarchical framework, an approach that permitted insights across sites that moderated methodological biases within sites. Using telemetry enabled us to detect permanent emigration events from breeding sites in two of ten birds; results that informed estimates for birds without tracking devices. These datasets yielded point estimates of true survival of Whimbrels from Colville River equipped with solar-powered satellite transmitters that were higher (0.83) than true survival estimates of Whimbrels from Kanuti River marked with leg flags alone (0.74) or equipped with surgically implanted satellite transmitters (0.50), but the 95% credible intervals on these estimates overlapped across groups. For species like Whimbrels that are difficult and costly to study, combining information from disparate data streams allowed us to derive novel demographic estimates, an approach with clear application to other similar studies.

Alaska↗

U.S. Geological Survey Tunison Laboratory of Aquatic Science research to rehabilitate native prey fish of the Lake Ontario fish community—Coregonine fishes

Restoration of native coregonines to Lake Ontario of the Laurentian Great Lakes will improve the diversity of forage for salmonid predators and ecological function in the lake, but efficacy of experimental releases for native species restoration must be evaluated. The Coregonine Research Program at the U.S. Geological Survey Tunison Laboratory of Aquatic Science encompassed a diverse array of research, with an emphasis on improved culture methods and field assessments of experimentally released juvenile coregonines. This research was carried out to support the Fish Community Objectives of the Lake Ontario Committee, is funded largely by the Great Lakes Restoration Initiative, and was done in collaboration with other laboratories and agencies, particularly, the U.S. Fish and Wildlife Service; New York State Department of Environmental Conservation; Ontario Ministry of Natural Resources and Forestry; and other U.S. Geological Survey laboratories. The Tunison Laboratory of Aquatic Science and partners have developed new and innovative hatchery techniques to raise cisco and bloater to life stages suitable for survival in Lake Ontario; assessed adult bloater survival in Lake Ontario; and evaluated survival, return rate, and reproduction of adult cisco in historic spawning locations in Lake Ontario embayments. Successes, challenges, and research needs are discussed.

Lake Ontario↗

Science for avian conservation: Priorities for the new millennium

Over the past decade, bird conservation activities have become the preeminent natural resource conservation effort in North America. Maturation of the North American Waterfowl Management Plan (NAWMP), establishment of Partners in Flight (PIF), and creation of comprehensive colonial waterbird and shorebird conservation plans have stimulated unprecedented interest in, and funding for, bird conservation in the United States, Canada, Mexico, and other countries in the western hemisphere. Key to that success in the United States has been active collaboration among federal, state and local governments, conservation organizations, academia, and industry. The U.S. Department of the Interior (DOI), which has primary statutory responsibility for migratory bird conservation and management, has been a key partner. Despite the great strides that have been made in bird conservation science, historical approaches to research and monitoring have often failed to provide sufficient information and understanding to effectively manage bird populations at large spatial scales. That shortcoming, and the lack of an integrated strategy and comprehensive set of research priorities, is more evident in light of the goals established by the North American Bird Conservation Initiative (NABCI). The NABCI is a trinational, coalition-driven effort to provide an organizational umbrella for existing conservation initiatives. The expanded focus of NABCI and individual bird conservation initiatives is to work together in an integrated, holistic fashion to keep common birds common and to increase populations of declining, threatened, and endangered species. To assist bird conservation initiatives in defining goals and developing new approaches to effective research, the U.S. Geological Survey (USGS), the research agency of DOI, convened a workshop, “Science for Avian Conservation: Understanding, Modeling, and Applying Ecological Relationships,” on 31 October–2 November 2000, which brought together 51 scientists from USGS, as well as scientists and conservationists from other agencies and organizations actively participating in NABCI. As the lead federal agency involved in bird conservation research, USGS has a clear legislative mandate to provide scientific information upon which future management plans and actions will be built. This article summarizes key issues and recommendations that arose from that workshop. The principal goal of the workshop was to guide USGS in defining its role, assessing capabilities, and directing future agency planning in support of bird conservation. A major component was to identify key areas of research needed in this new era of bird conservation science. Although tailored to the mission of USGS, workshop recommendations visualize a bold direction for future avian conservation science in which research and monitoring work in tandem with management to increase our understanding of avian populations and the processes that affect them. The USGS is a science agency whose role is to provide objective scientific information to management agencies and therefore is not directly involved in high-level resource policy-making or on-the-ground management decision making. Nevertheless, it is important to note that effective policy decision making must integrate the best available science with political and economic realities to achieve successful avian conservation—an important subject acknowledged in the workshop, but largely beyond its scope of discussion. Williams (2003) questions regarding how scientific information can be effectively communicated to decision makers and incorporated into natural resource policy. Without an aggressive vision and the willingness of researchers, managers, and policy makers to implement it, conservation of North American birds is likely to proceed without the full benefit of scientific investigation. These recommendations represent the principal conclusions drawn by workshop participants and do not necessarily reflect official USGS policy.

The Auk↗

Managers' summary - Ecological studies of the Pryor Mountain Wild Horse Range, 1992-1997

Ecological Studies of the Pryor Mountain Wild Horse Range, 1992-1997 provides a synthesis of key findings of landscape-scale, interdisciplinary studies of the effects of wild horses and native ungulates on a rugged, mountain ecosystem. This is perhaps the most comprehensive study of a wild horse herd conducted. This was a complex study and one involving a truly interagency approach. Six agencies either provided input to research priority setting, funding, or both. The agencies included the Bureau of Land Management, National Park Service, U.S. Geological Survey, Montana Department of Fish, Wildlife and Parks, Wyoming Game and Fish Department, and U.S. Forest Service. The major research direction and effort came from the U.S. Geological Survey and Natural Resources Ecology Lab, Colorado State University with Montana State University and the University of Kentucky also participating. Ungulate monitoring was conducted by the U.S. Geological Survey, Biological Resources Division, Bureau of Land Management, Billings Field Office and the Montana Fish and Wildlife Parks, with funding by Bighorn Canyon National Recreation Area. Many other individuals and groups were involved and deserve credit. The report printing was made possible with funds from the Bureau of Land Management, Wild Horse and Burro Program, Washington Office. This report was prepared by the Information Management Project, Midcontinent Ecological Science Center, U.S. Geological Survey.

Montana, Wyoming↗