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Hydrologic and water-quality data, Guanella Pass area, Colorado, water year 1995

Water quality of streams and lakes in the Guanella Pass area could be affected by the proposed reconstruction of the existing road through the area. During water year 1995 (October 1, 1994, to September 30, 1995), data were collected that provide reconnaissance information about thehydrology, water quality, sediment transport, biology, and bulk atmospheric-deposition in the Guanella Pass study area. Data were collected at 5 stream monitoring stations, 23 synoptic-stream sites, 11 road-runoff sites, 8 ground-water sites, 4 lake/reservoir sites, 2 snow-precipitation sites, 11 biological sampling sites, and 12 bulk atmospheric- deposition sites.

Open-File Report↗

Nutrient dynamics in five off-stream reservoirs in the lower South Platte River basin, March-September 1995

In 1995, the U.S. Geological Survey conducted a study to characterize nutrient concentrations in five off-stream reservoirs in the lower South Platte River Basin?Riverside, Jackson, Prewitt, North Sterling, and Julesburg. These reservoirs are critical sources of irrigation water for agricultural areas, and several also are used for fishing, boating, swimming, hunting, and camping. Data collected for this study include depth profiles of water temperature, dissolved oxygen, pH, and specific conductance; nutrient species concentrations in the water column, bottom sediment, and inflow and outflow canals; and chlorophyll-a concentrations in the water column. Data were collected during the irrigation season from March through September 1995 at five sites each in Riverside, Jackson, Prewitt, and Julesburg Reservoirs and at six sites in North Sterling Reservoir. The five reservoirs studied are located in similar geographic, climatic, and land-use areas and, as a result, have a number of similarities in their internal nutrient dynamics. Nitrogen concentrations in the reservoirs were highest in March and decreased through September as a result of dilution from river inflows and biological activity. From March through June, decreases in nitrogen concentrations in the river and biological activity contributed to decreases in reservoir concentrations. From July through September, inflows from the river were cut off, and biological activity in the reservoirs led to further decreases in nitrate concentrations, which fell to near or below detectable levels. Phosphorus concentrations in the reservoirs did not show the same consistent decrease from March through September. Phosphorus likely was recycled continuously back to algae during the study period through processes such as excretion from fish, decay of aquatic plants and animals, and release of orthophosphate from bottom sediment during periods of low oxygen. With the exception of phosphorus in Jackson Reservoir, the reservoirs acted as a sink for both nitrogen and phosphorus; the percentage of the total mass (initial storage plus inflows) trapped in the reservoirs during the study period ranged from 49 to 88 percent for nitrogen and from 20 to 86 percent for phosphorus. The nutrient loading, morphology, and operation of the five reservoirs differed, however, leading to several important differences in nutrient dynamics among the reservoirs. Mean nutrient concentrations during the study period decreased in a downstream direction from Riverside Reservoir to Julesburg Reservoir because concentrations in the source water?the South Platte River?decreased downstream as a result of increased distance from wastewater loading upstream from Kersey, Colorado, and the replacement of diverted river water with more dilute ground-water return flow. North Sterling was an exception to this decrease; the strong stratification and resulting anoxia that developed in the reservoir led to nutrient release from the bottom sediments that offset the decrease in external nutrient loading. Variations in nutrient loading also contributed to differences in the nutrient limiting algal growth in the reservoirs, as indicated by mass nitrogen:phosphorus ratios. In Riverside and Jackson Reservoirs, nitrogen became the potential limiting nutrient by midsummer as biological activity depleted the available supply of nitrogen while the high initial phosphorus load was recycled. Prewitt, North Sterling, and Julesburg Reservoirs, with lower initial loadings of phosphorus, were phosphorus-limited throughout the study period, with additional colimitation of nitrogen as biological uptake reduced nitrogen concentrations to near or below laboratory detection limits. The percentage of the total nitrogen and phosphorus mass lost through outflow and trapped in the reservoir due to processes such as biological uptake and sedimentation varied between reservoirs.Generally, reservoirs with short residence times such as North Ste

Water-Resources Investigations Report↗

U.S. Geological Survey, National Wildlife Health Center, 2011 report of selected wildlife diseases

The National Wildlife Health Center (NWHC) was founded in 1975 to provide technical assistance in identifying, controlling, and preventing wildlife losses from diseases, conduct research to understand the impact of diseases on wildlife populations, and devise methods to more effectively manage these disease threats. The impetus behind the creation of the NWHC was, in part, the catastrophic loss of tens of thousands of waterfowl as a result of an outbreak of duck plague at the Lake Andes National Wildlife Refuge in South Dakota during January 1973. In 1996, the NWHC, along with other Department of Interior research functions, was transferred from the U.S. Fish and Wildlife Service to the U.S. Geological Survey (USGS), where we remain one of many entities that provide the independent science that forms the bases of the sound management of the Nation’s natural resources. Our mission is to provide national leadership to safeguard wildlife and ecosystem health through dynamic partnerships and exceptional science. The main campus of the NWHC is located in Madison, Wis., where we maintain biological safety level 3 (BSL–3) diagnostic and research facilities purposefully designed for work with wildlife species. The NWHC provides research and technical assistance on wildlife health issues to State, Federal, and international agencies. In addition, since 1992 we have maintained a field station in Hawaii, the Honolulu Field Station, which focuses on marine and terrestrial natural resources throughout the Pacific region. The NWHC conducts diagnostic investigations of unusual wildlife morbidity and mortality events nationwide to detect the presence of wildlife pathogens and determine the cause of death. This is also an important activity for detecting new, emerging and resurging diseases. The NWHC provides this crucial information on the presence of wildlife diseases to wildlife managers to support sound management decisions. The data and information generated also allows for further indepth analyses for determining the biological and ecological significance of disease events, detecting disease trends over time and space, as well as detecting any significant changes to how diseases manifest in the field. Moreover, this information allows us to gain insight into the significance of future wildlife disease events. The purpose of this report is to provide a sample of NWHC data that are available from our Laboratory Information Management System (LIMS). These data are presented in summary format with minimal statistical analysis and interpretation. The goal is to share these data with wildlife managers and other stakeholders, promote the use of NHWC data, and encourage the sharing of wildlife disease data to improve temporal and geographic surveillance coverage. Continued national surveillance for wildlife diseases is essential for providing early detection and warning of events that have the potential to result in harm to human health, economic losses, declines in wildlife populations, and subsequent ecological disturbances. Increased collaboration, coordination, and sharing of surveillance data will enhance this Nation’s ability to detect and respond to wildlife disease threats.

Scientific Investigations Report↗

Characterization of deep-sea coral and sponge communities in Greater Farallones National Marine Sanctuary: Point Arena South Essential Fish Habitat Conservation Area and New Amendment 28 Areas

This report summarizes samples collected during a remotely operated vehicle (ROV) cruise conducted in October 2019 on board E/V Nautilus. Areas sampled in Greater Farallones National Marine Sanctuary included areas proposed for fisheries management zoning in the Point Arena South (PAS) Essential Fish Habitat Conservation Area (EFH). Dive planning targeted habitats and biological communities of corals, sponges, and fishes in relation to the new, 2020 configuration of PAS EFH (hereafter referred to as PAS), which includes areas once closed to commercial bottom trawling and now opened to bottom trawling, once opened to bottom trawling and now closed, or that remain closed to commercial bottom trawling. Particular interest was given to enumerating deep-sea corals and sponges (DSCS) in these areas as they are long-lived, slow-growing species that are vulnerable to impacts from bottom trawling. Fish species were also enumerated. These data provide the most recent assessment and characterization for a portion of these areas before the final ruling on Amendment 28 went into effect on January 1, 2020 (50 C.F.R. part 660). A total of seven sponge specimens were collected on this mission, some of which could potentially be new species, such as the large yellow ‘plate’-shaped sponge and the ‘palm frond’ morphology of the predatory sponge Asbestopluma , documented on both dives. Six coral collections were made, including three types of red Swiftia sp. gorgonians (two had fan-shaped morphology and one had branched morphology) with different polyp colors. A high diversity of fishes, particularly groundfish, were documented across the entire PAS area. The findings from this cruise will be provided to NOAA’s National Marine Fisheries Service to help them identify biologically complex areas of the seafloor that are most sensitive to bottom trawling and aid in the ongoing management of this designated essential fish habitat conservation zone. Habitat data from these surveys will be used to confirm substrate prediction models that can be used to predict DSCS habitats where there is a dearth of visual observations.

California↗

Too simple, too complex, or just right? Advantages, challenges, and guidance for indicators of genetic diversity

Measuring genetic diversity of wild species using DNA-based data remains resource intensive and time consuming for nearly all species. However, genetic assessments are needed for global conservation commitments, including the Convention on Biological Diversity, and for governments and managers to evaluate conservation progress, as well as prioritizing species and populations to preserve and recover genetic diversity (e.g., via genetic rescue). Recently, indicators were developed for tracking and reporting genetic diversity status and trends for hundreds of species. The indicators quantify two simple proxies of within-population and among-population genetic diversity and adaptive potential: small effective population size ( N e < 500) and the loss of genetically distinct populations. The indicators must balance scientific credibility, practicality, and simplicity. In the present article, we summarize the advantages of these pragmatic indicators, address critiques by scientists for simplifying assumptions and by policymakers for complexity, and propose potential solutions and next steps. We aim to support practitioners putting indicators into policy, action, legislation, and reporting.

BioScience↗

Design and methods of the Midwest Stream Quality Assessment (MSQA), 2013

During 2013, the U.S. Geological Survey (USGS) National Water-Quality Assessment Project (NAWQA), in collaboration with the USGS Columbia Environmental Research Center, the U.S. Environmental Protection Agency (EPA) National Rivers and Streams Assessment (NRSA), and the EPA Office of Pesticide Programs assessed stream quality across the Midwestern United States. This Midwest Stream Quality Assessment (MSQA) simultaneously characterized watershed and stream-reach water-quality stressors along with instream biological conditions, to better understand regional stressor-effects relations. The MSQA design focused on effects from the widespread agriculture in the region and urban development because of their importance as ecological stressors of particular concern to Midwest region resource managers. A combined random stratified selection and a targeted selection based on land-use data were used to identify and select sites representing gradients in agricultural intensity across the region. During a 14-week period from May through August 2013, 100 sites were selected and sampled 12 times for contaminants, nutrients, and sediment. This 14-week water-quality “index” period culminated with an ecological survey of habitat, periphyton, benthic macroinvertebrates, and fish at all sites. Sediment was collected during the ecological survey for analysis of sediment chemistry and toxicity testing. Of the 100 sites, 50 were selected for the MSQA random stratified group from 154 NRSA sites planned for the region, and the other 50 MSQA sites were selected as targeted sites to more evenly cover agricultural and urban stressor gradients in the study area. Of the 50 targeted sites, 12 were in urbanized watersheds and 21 represented “good” biological conditions or “least disturbed” conditions. The remaining 17 targeted sites were selected to improve coverage of the agricultural intensity gradient or because of historical data collection to provide temporal context for the study. This report provides a detailed description of the MSQA study components, including surveys of ecological conditions, routine water sampling, deployment of passive polar organic compound integrative samplers, and stream sediment sampling at all sites. Component studies that were completed to provide finer scale temporal data or more extensive analysis at selected sites, included continuous water-quality monitoring, daily pesticide sampling, laboratory and in-stream water toxicity testing efforts, and deployment of passive suspended-sediment samplers.

Illinois, Indiana, Iowa, Kansas, Kentucky, Michiga↗

Expanded conceptual risk framework for uranium mining in Grand Canyon watershed—Inclusion of the Havasupai Tribe perspective

In 2012, the Secretary of the U.S. Department of the Interior placed a 20-year limit on mineral extraction on Federal lands in the Grand Canyon watershed to permit further study of the environmental effects of uranium mining. Tribal concerns were also noted by the U.S. Department of the Interior and included in the rationale for the decision stating Tribal resource impacts could not be mitigated and cultural degradation may result should mining occur within sacred and traditional places of Tribal peoples. The U.S. Geological Survey previously developed a conceptual framework for a uranium mine in the region that defined contaminant sources and physical, chemical, and biological processes that affect contaminant transport to ecological receptors. However, published risk models have largely ignored exposure pathways relevant to Tribal communities in terms of traditional uses and existential values of the resources included. This report presents an updated conceptual risk framework for uranium mining that includes indigenous knowledge components informed by the Havasupai Tribe perspective. The expansion of the framework relied on connecting to the foundations of the Havasupai ceremonial wheel—food, environment, belief system, and ceremony. The framework is applied to uranium development near Red Butte, an important gathering place for multiple federally recognized Tribes including the Havasupai, Hopi, Navajo, and Zuni. Plants and animals important to the Havasupai for subsistence, ceremonial, and medicinal practices and how mining affects these practices are described. The final framework is presented in English and Havasupai to aid Tribal members in understanding how the framework relates to their community and to help preserve the language and historical cultural practices for future generations. New or expanded exposure pathways include inhalation, ingestion, and absorption from traditional food and medicines as well as ceremonial practices. The updated framework has allowed the U.S. Geological Survey to take first steps in understanding resources important to the Havasupai and to build relationships to improve co-production in our research. Ideally, the framework and other research can be used, along with indigenous knowledge, in Federal research and decision making for mining in the Grand Canyon region.

Open-File Report↗

Preliminary methodology to assess the national and regional impact of U.S. wind energy development on birds and bats

The U.S. Geological Survey has developed a methodology to assess the impacts of wind energy development on wildlife; it is a probabilistic, quantitative assessment methodology that can communicate to decision makers and the public the magnitude of these effects on species populations. The methodology is currently applicable to birds and bats, focuses primarily on the effects of collisions, and can be applied to any species that breeds in, migrates through, or otherwise uses any part of the United States. The methodology is intended to assess species at the national scale and is fundamentally different from existing methods focusing on impacts at individual facilities. Publicly available fatality information, population estimates, species range maps, turbine location data, biological characteristics, and generic population models are used to generate both a ranked list of species based on relative risk as well as quantitative measures of the magnitude of the effect on species' population trend and size. Three metrics are combined to determine direct and indirect relative risk to populations. A generic population model is used to estimate the expected change in population trend and includes additive mortality from collisions with wind turbines. Lastly, the methodology uses observed fatalities and an estimate of potential biological removal to assess the risk of a decline in population size. Data for six bird species have been processed through the entire methodology as a test case, and the results are presented in this report. Components of the methodology are based on simplifying assumptions and require information that, for many species, may be sparse or unreliable. These assumptions are presented in the report and should be carefully considered when using output from the methodology. In addition, this methodology can be used to recommend species for more intensive demographic modeling or highlight those species that may not require any additional protection because effects of wind energy development on their populations are projected to be small.

Scientific Investigations Report↗

The Amphibian Research and Monitoring Initiative (ARMI): 5-year report

The Amphibian Research and Monitoring Initiative (ARMI) is an innovative, multidisciplinary program that began in 2000 in response to a congressional directive for the Department of the Interior to address the issue of amphibian declines in the United States. ARMI&rsquo;s formulation was cross-disciplinary, integrating U.S. Geological Survey scientists from Biology, Water, and Geography to develop a course of action (Corn and others, 2005a). The result has been an effective program with diverse, yet complementary, expertise. ARMI&rsquo;s approach to research and monitoring is multiscale. Detailed investigations focus on a few species at selected local sites throughout the country; monitoring addresses a larger number of species over broader areas (typically, National Parks and National Wildlife Refuges); and inventories to document species occurrence are conducted more extensively across the landscape. Where monitoring is conducted, the emphasis is on an ability to draw statistically defensible conclusions about the status of amphibians. To achieve this objective, ARMI has instituted a monitoring response variable that has nationwide applicability. At research sites, ARMI focuses on studying species/environment interactions, determining causes of observed declines, and developing new techniques to sample populations and analyze data. Results from activities at all scales are provided to scientists, land managers, and policymakers, as appropriate. The ARMI program and the scientists involved contribute significantly to understanding amphibian declines at local, regional, national, and international levels. Within National Parks and National Wildlife Refuges, findings help land managers make decisions applicable to amphibian conservation. For example, the National Park Service (NPS) selected amphibians as a vital sign for several of their monitoring networks, and ARMI scientists provide information and assistance in developing monitoring methods for this NPS effort. At the national level, ARMI has had major exposure at a variety of meetings, including a dedicated symposium at the 2004 joint meetings of the Herpetologists&rsquo; League, the American Society of Ichthyologists and Herpetologists, and the Society for the Study of Amphibians and Reptiles. Several principal investigators have brought international exposure to ARMI through venues such as the World Congress of Herpetology in South Africa in 2005 (invited presentation by Dr. Gary Fellers), the Global Amphibian Summit, sponsored by the International Union for Conservation of Nature (IUCN) and Wildlife Conservation International, in Washington, D.C., 2005 (invited participation by Dr. P.S. Corn), and a special issue of the international herpetological journal Alytes focused on ARMI in 2004 (edited by Dr. C.K. Dodd, Jr.). ARMI research and monitoring efforts have addressed at least 7 of the 21 Threatened and Endangered Species listed by the U.S. Fish and Wildlife Service (California red-legged frog [Rana draytonii], Chiricahua leopard frog [R. chiricahuensis], arroyo toad [Bufo californicus], dusky gopher frog [Rana sevosa], mountain yellow-legged frog [R. muscosa], flatwoods salamander [Ambystoma cingulatum], and the golden coqui [Eleutherodactylus jasperi]), and 9 additional species of concern recognized by the IUCN. ARMI investigations have addressed time-sensitive research, such as emerging infectious diseases and effects on amphibians related to natural disasters like wildfire, hurricanes, and debris flows, and the effects of more constant, environmental change, like urban expansion, road development, and the use of pesticides. Over the last 5 years, ARMI has partnered with an extensive list of government, academic, and private entities. These partnerships have been fruitful and have assisted ARMI in developing new field protocols and analytic tools, in using and refining emerging technologies to improve accuracy and efficiency of data handling, in conducting amphibian disease, malformation, and environmental effects research, and in implementing a network of monitoring and research sites. Accomplishments from these endeavors include more than 40 publications on amphibian status and trends, nearly 100 publications on amphibian ecology and causes of declines, and over 30 methodological publications. Several databases have emerged as a result of ARMI and its partnerships; one, a digital atlas of ranges for all U.S. amphibian species, was used by the IUCN to display amphibian distribution maps in the Global Amphibian Assessment Project. Given the scope of ARMI and the panoply of projects, findings have had implications for policy. Investigations that demonstrate amphibian declines or illuminate causes of declines provide valuable information about habitat management, environmental effects, mechanisms for the spread of disease, and human/amphibian interfaces. This information has been made available to land managers, scientists, educators, Congress and other policymakers, and the public. The support afforded ARMI by Congress has been influential in the program&rsquo;s development and success. The value of ARMI&rsquo;s efforts will continue to increase as we are able to extend our studies spatially and temporally to answer critical questions with more confidence. We are using ARMI&rsquo;s resources efficiently and continuing to develop innovative mechanisms for leveraging resources for maximum effectiveness during challenging financial times. This report is a 5-year retrospective of the structure, methodology, progress, and contributions to the broader scientific community that have resulted from this national USGS program. We evaluate ARMI&rsquo;s success to date, with regard to the challenges faced by the program and the strengths that have emerged. We chart objectives for the next 5 years that build on current accomplishments, highlight areas meriting further research, and direct efforts to overcome existing weaknesses.

Scientific Investigations Report↗

Assessment of smolt condition for travel time analysis. Annual report 1988

Estimates of migration rates and travel times of juvenile salmonids within index reaches of the Columbia River basin are collected through the Smolt Monitoring Program for use by the Fish Passage Center. With increased reliance upon travel time estimates in 1988 by the Fish Passage Center, this study was implemented to monitor the biological attributes of juvenile chinook salmon Oncorhynchus tshawytscha and steelhead trout 0.- mykiss used for the travel time estimates, The physiological ability of fish to respond to stress was assessed by measuring levels of plasma cortisol, glucose, and chloride before and after a stress-challenge test. Most mid-Columbia and Snake river groups responded normally to the stress challenge exhibiting an increase in plasma glucose and cortisol and a slight decrease in chloride. Fish trucked to release sites were more stressed than those released directly from the hatchery, but most still responded to the stress challenge test normally. An abnormal or extreme stress response occurred when there were deviations from preferred protocol, disease problems at hatcheries, or when fish were trucked over long periods (7h). The development of smoltification was evaluated by measuring gill Na+K+-ATPase, plasma thyroxine, purines, and body morphology. Most groups were similar at the hatcheries but differed as the migration to McNary Dam proceeded. Gill ATPase activity increased 2-3 fold during the first 20 days of migration, after which it changed little. Fish with longer in-river travel times appeared to be more smolted than those which were in the river for a shorter period of time. The prevalence of bacterial kidney disease (BKD) in spring chinook salmon was evaluated using the enzyme linked immunosorbent assay (ELISA) and fluorescent antibody technique (FAT). Prevalence of BKD in groups tested using the ELISA method was as high as 99% at some downstream locations. A review of indices is presented as a guide, to the development of an index of smolt condition and preliminary data are presented. An index could be used as a tool to synthesize information on fish condition to assist with management and evaluation of the Water Budget.

Report↗

Water resources data for Maine, water year 1974

Water resources data for the 1974 water year for Maine including records of streamflow or reservoir storage at gaging stations, partial-record stations, and miscellaneous sites, records of water-quality data on the chemical and physical characteristics of surface- and ground-water, and records of ground-water levels in index wells are given in this report. In Part 1, records are included for 63 gaging stations, of which 62 are streamflow discharge stations, and 1 is a lake station; also are included records for 22 crest-stage partial-record stations, and 14 miscellaneous sites. In Part 2, water quality data on chemical, physical, and biological characteristics of surface and ground water were collected from designated sampling sites at predetermined intervals such as once daily, weekly, monthly, or less frequently, and at some sites data were recorded on punched paper tape at 60minute intervals. Records are given for 38 sampling stations of which 11 are continuous record stations, and 27 are miscellaneous sites. Records of chemical analyses are also given for 21 ground-water sites. In Part 3, water level data are shown for 11 ground-water wells. Locations of surface-water stations, water-quality stations, and ground-water wells are shown in figure 2. A few pertinent stations in bordering States and Provinces are also included in this report. The records were collected and computed by the Water Resources Division of the U.S. Geological Survey under the direction of G. S. Hayes, District Chief, succeeded by C. R. Wagner. These data represent that portion of the National Water Data System collected by the U.S. Geological Survey and cooperating State and Federal agencies in Maine.

Maine↗

Report of the River Master of the Delaware River for the period December 1, 2008–November 30, 2009

A Decree of the Supreme Court of the United States, entered June 7, 1954, established the position of Delaware River Master within the U.S. Geological Survey (USGS). In addition, the Decree authorizes diversions of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York City, to be made under the supervision and direction of the River Master. The Decree stipulates that the River Master will furnish reports to the Court, not less frequently than annually. This report is the 56th Annual Report of the River Master of the Delaware River. It covers the 2009 River Master report year, the period from December 1, 2008, to November 30, 2009. During the report year, precipitation in the upper Delaware River Basin was 50.89 inches (in.) or 116 percent of the long-term average. Combined storage in Pepacton, Cannonsville, and Neversink Reservoirs remained high throughout the year and did not decline below 80 percent of combined capacity at any time. Delaware River operations during the year were conducted as stipulated by the Decree and the Flexible Flow Management Program (FFMP). Diversions from the Delaware River Basin by New York City and New Jersey were in full compliance with the Decree. Reservoir releases were made as directed by the River Master at rates designed to meet the flow objective for the Delaware River at Montague, New Jersey, on 25 days during the report year. Releases were made at conservation rates—rates designed to relieve thermal stress and protect the fishery and aquatic habitat in the tailwaters of the reservoirs—on all other days. During the report year, New York City and New Jersey complied fully with the terms of the Decree, and directives and requests of the River Master. As part of a long-term program, the quality of water in the Delaware Estuary between Trenton, New Jersey, and Reedy Island Jetty, Delaware, was monitored at various locations. Data on water temperature, specific conductance, dissolved oxygen, and pH were collected continuously by electronic instruments at four sites. In addition, selected water-quality data were collected at 22 sites on a monthly basis. The Delaware River Basin Commission (DRBC) collects monthly samples from March through October at 22 sites between Biles Channel and South Brown Shoal. Samples were collected and analyzed by the State of Delaware for the DRBC. At each site, water samples were collected at a single point near the center of the channel near the surface and analyzed for selected physical properties, and chemical and biological constituents including routine chemical substances, nutrients and bacteria. These consist of analyses of field measurements and laboratory determinations.

Delaware River↗

Scientific monitoring plan in support of the selected alternative of the Glen Canyon Dam Long-Term Experimental and Management Plan

Introduction The purpose of this document is to describe a strategy by which monitoring and research data in the natural and social sciences will be collected, analyzed, and provided to the U.S. Department of the Interior (DOI), its bureaus, and to the Glen Canyon Dam Adaptive Management Program (GCDAMP) in support of implementation of the Glen Canyon Dam Long-Term Experimental and Management Plan (LTEMP) (U.S. Department of the Interior, 2016a). The selected alternative identified in the LTEMP Record of Decision (ROD) (U.S. Department of the Interior, 2016b) describes various data collection, analysis, modeling, and interpretation efforts to be conducted by the U.S. Geological Survey’s (USGS) Grand Canyon Monitoring and Research Center (GCMRC), partner agencies, and cooperators that will inform decisions about operations of Glen Canyon Dam and management of downstream resources between 2017 and 2037, the performance period of the LTEMP. General data collection, analysis, modeling, and interpretation activities are described in this science plan, whereas specific monitoring and research activities and detailed study plans are to be described in the GCDAMP’s triennial work plans (TWPs) to be developed by the Bureau of Reclamation and GCMRC with input from partner agencies and cooperators during the LTEMP period, which are to be reviewed and recommended by the GCDAMP and approved by the Secretary of the Interior. The GCDAMP consists of several components, the primary committee being the Adaptive Management Work Group (AMWG). This Federal advisory committee is composed of 25 agencies and stakeholder groups and is chaired by the Secretary of the Interior’s designee. The AMWG makes recommendations to the Secretary of the Interior concerning operations of Glen Canyon Dam and other experimental management actions that are intended to fulfill some obligations of the Grand Canyon Protection Act of 1992. The Technical Work Group (TWG) is a subcommittee of the AMWG and provides technical advice to the AMWG. It is composed of technical and science representatives from the same agencies and stakeholder groups who serve on the AMWG. GCMRC is the primary science provider to the GCDAMP and also coordinates many aspects of the science performed by cooperators and partner agencies. The Science Advisors Program provides independent science reviews and advice at the request of the GCDAMP. The plan proposed here necessarily depends on (1) the protocol for decision-making and the requirements for scientific data reporting described in the LTEMP ROD, (2) the priorities of the GCDAMP as directed by the LTEMP ROD (see Department of the Interior, 2016b, section 6.1), (3) the priorities for monitoring and research in the conservation measures section of the Biological Opinion for the LTEMP (U.S. Department of the Interior, 2016b, LTEMP ROD attachment E), (4) the priorities for resource management and information needs established by Federal and State resource-management agencies within the GCDAMP, (5) scientific understanding about the linkage between the status of those resources and operations of Glen Canyon Dam, and (6) the need to resolve existing scientific uncertainties about the linkage between dam operations and the condition of resources. We note that resource-management prioritization is fundamentally a policy decision charged specifically to DOI for the Colorado River in Glen and Grand Canyons, as outlined most recently in the LTEMP ROD, and is not the responsibility of the GCMRC. However, it is the responsibility of the GCMRC to describe the nature of scientific understanding, the nature of scientific uncertainty, and the risk of making resourcemanagement decisions in the face of existing scientific uncertainty. The goals of science activities in the next 20 years are to inform operational decisions regarding Glen Canyon Dam operations described in the LTEMP ROD, resolve remaining scientific uncertainties, and to monitor resource trends that are affected entirely, or in part, by dam operations.

Open-File Report↗

Physiological response of wild dugongs ( Dugong dugon ) to out-of-water sampling for health assessment

The dugong ( Dugong dugon ) is a vulnerable marine mammal with large populations living in urban Queensland waters. A mark-recapture program for wild dugongs has been ongoing in southern Queensland since 2001. This program has involved capture and in-water sampling of more than 700 dugongs where animals have been held at the water surface for 5 min to be gene-tagged, measured, and biopsied. In 2008, this program expanded to examine more comprehensively body condition, reproductive status, and the health of wild dugongs in Moreton Bay. Using Sea World's research vessel, captured dugongs were lifted onto a boat and sampled out-of-water to obtain accurate body weights and morphometrics, collect blood and urine samples for baseline health parameters and hormone profiles, and ultrasound females for pregnancy status. In all, 30 dugongs, including two pregnant females, were sampled over 10 d and restrained on deck for up to 55 min each while biological data were collected. Each of the dugongs had their basic temperature-heart rate-respiration (THR) monitored throughout their period of handling, following protocols developed for the West Indian manatee ( Trichechus manatus ). This paper reports on the physiological response of captured dugongs during this out-of-water operation as indicated by their vital signs and the suitability of the manatee monitoring protocols to this related sirenian species. A recommendation is made that the range of vital signs of these wild dugongs be used as benchmark criteria of normal parameters for other studies that intend to sample dugongs out-of-water.

Queensland↗

Water quality in the Allegheny and Monongahela River basins, Pennsylvania, West Virginia, New York, and Maryland, 1996-98

Major influences and findings for ground water quality, surface water quality, and biology in the Allegheny and Monongahela River basins are described and illustrated. Samples were collected in a variety of media to determine trace elements, sulfate, pesticides, nitrate, volatile organic compounds, organochlorine compounds, and radon-222. This report discusses the influences of several land-use practices, such as coal mining, urbanization, agriculture, and forestry. The report also includes a summary of a regional investigation of water quality and quality invertebrates in the Northern and Central Appalachian coal regions.

Maryland, New York, Pennsylvania, West Virginia↗