Results for “Literature Review” — Page 40

USGS2024

Refuge identification as a climate adaptation strategy to promote fish persistence during drought

Climate change is leading to global increases in extreme events, such as drought, that threaten the persistence of freshwater biodiversity. Identification and management of drought refuges, areas that promote resistance and resilience to drought, will be critical for preserving and recovering aquatic biodiversity in the face of climate change and increasing human water use. Although several reviews have addressed the effects of droughts and highlighted the role of refuges, a need remains on how to identify functional refuges that can be used in a drought management framework to support fish assemblages. We synthesize literature on drought refuges and propose a framework to identify and manage functional refuges that incorporate species physiological tolerances, behaviours and life-history strategies. Stream pools, perennial reaches and off-channel habitat were identified as important drought refuges for fish. The ability of refuges to improve species resistance and resilience to drought requires careful consideration of the biology of the target species and targeted management to promote persistence, quality and connectivity of refuges. Case studies illustrate that management of drought refuges can be challenging because of competing demands for water, incomplete knowledge of ecological requirements for target species and the increasing occurrence of multi-year droughts. Climate adaptation is increasingly important, and drought refuges can increase fish resistance and resilience to climate-related drought across the riverscape.

Fish and Fisheries↗

USGS2017

Ecology of the macrophyte Podostemum ceratophyllum Michx. (Hornleaf riverweed), a widespread foundation species of eastern North American rivers

Podostemum ceratophyllum , commonly called Hornleaf Riverweed, occurs in mid-order montane and piedmont rivers of eastern North America, where the plant grows submerged and attached to rocks and stable substrates in swift, aerated water. Multiple studies, mostly conducted in the southern portions of the plant’s range, have shown that Podostemum can variously influence benthic communities in flowing waters. However, a synthetic review of the biology and ecology of the plant is needed to inform conservation, particularly because P. ceratophyllum is reported to be in decline in much of its range, for mostly unknown reasons. We have thus summarized the literature showing that Podostemum provides substantial habitat for invertebrates and fish, may be consumed by invertebrates, turtles, and other vertebrates, removes and sequesters dissolved elements (i.e., nitrogen, phosphorus, calcium, zinc, etc.) from the water column, and contributes organic matter to the detrital pool. Podostemum may be tolerant to some forms of pollution but appears vulnerable to sedimentation, epiphytic over-growth, and hydrologic changes that result in desiccation, and possibly increased herbivory pressure. Much remains unknown about Podostemum , including aspects of morphological variation, seed dispersal, and tolerance to changes in temperature and water chemistry. Nonetheless, Podostemum may be considered a foundation species, whose loss from eastern North American rivers is likely to affect higher trophic levels and ecosystem processes.

Aquatic Botany↗

USGS1958

Rate for flood insurance

Soon after the 1951 floods on the Kansas and lower Missouri Rivers, President Truman submitted to Congress (82d Cong., 1st sess., 1951) a proposal for a national flood insurance fund. Although the proposal was not acted upon by the 82d Congree, there was considerable discussion of it in the press and in the technical literature. Among the latter were papers by Langbein (1953), Foster (1954), and by the Insurance Executive Association (1952). The paper by Langbein discussed flood insurance as a means of promoting wise use of the flood plain. Foster's paper reviewed his work for the Insurance Executive Association without, however, reaching any independent decision as to the workability of hydrologic techniques in an insurance program. The report of the Insurance Executive Association presented mainly the industries viewpoint that flood insurance is not feasible. It is interesting to note, however, that in a recent report McGuinness (1957), of the Allstate Insurance Co., says "This position has been taken without recourse to actuarial or statistical methods which might be used to fit an insurance company's underwriting retentions to the exposures it would meet."

Open-File Report↗

USGS2015

Groundwater: The disregarded component in lake water and nutrient budgets, Part 1: Effects of groundwater on hydrology

Lake eutrophication is a large and growing problem in many parts of the world, commonly due to anthropogenic sources of nutrients. Improved quantification of nutrient inputs is required to address this problem, including better determination of exchanges between groundwater and lakes. This first of a two-part review provides a brief history of the evolution of the study of groundwater exchange with lakes, followed by a listing of the most commonly used methods for quantifying this exchange. Rates of exchange between lakes and groundwater compiled from the literature are statistically summarized for both exfiltration (flow from groundwater to a lake) and infiltration (flow from a lake to groundwater), including per cent contribution of groundwater to lake-water budgets. Reported rates of exchange between groundwater and lakes span more than five orders of magnitude. Median exfiltration is 0.74 cm/day, and median infiltration is 0.60 cm/day. Exfiltration ranges from near 0% to 94% of input terms in lake-water budgets, and infiltration ranges from near 0% to 91% of loss terms. Median values for exfiltration and infiltration as percentages of input and loss terms of lake-water budgets are 25% and 35%, respectively. Quantification of the groundwater term is somewhat method dependent, indicating that calculating the groundwater component with multiple methods can provide a better understanding of the accuracy of estimates. The importance of exfiltration to a lake budget ranges widely for lakes less than about 100 ha in area but generally decreases with increasing lake area, particularly for lakes that exceed 100 ha in area. No such relation is evident for lakes where infiltration occurs, perhaps because of the smaller sample size. Copyright © 2014 John Wiley & Sons, Ltd.

Hydrological Processes↗

USGS2026

Advances and applications of Unoccupied Aerial Systems (UAS) research in landscape ecology

Landscape ecologists have long depended on satellite and aerial remote sensing to address questions about landscape pattern and process, structure, and change (Foody 2023 ). Unoccupied aerial systems/vehicles (UAS/UAV, a.k.a. drones) technology is becoming an increasingly popular research tool in environmental sciences allowing scientists to generate low-cost, high-quality, and high-resolution imagery on demand that can be tailored to specific research questions. While satellite data are of a fixed resolution and temporal interval, UAS offer researchers control and flexibility to design studies and collect data at resolutions and scales that provide ecologically relevant information at finer spatial resolutions (e.g., < 30 cm) than what is currently available from satellite platforms (typically > 3m), thus helping capture objects such as individual plant canopies, micro-topography, and individual animals. Unlike satellites with fixed orbits, UAS can be deployed at more optimal temporal frequencies for ecological monitoring. We organized the special collection “Advances and Applications of Unoccupied Aerial Systems (UAS) Research in Landscape Ecology” to showcase the many ways that UAS tools and technologies are currently applied to advance landscape ecological research. When we announced the collection in 2023, only 11 papers published in the journal Landscape Ecology used UAS data, which was a notably small number compared to many other general ecology, environmental science and remote sensing journals. In an attempt to understand why UAS were not more widely used in landscape ecology and provide possible solutions, we published a review article (Villarreal et al. 2025) that identified the challenges, knowledge gaps, and obstacles for the adoption of UAS technologies in landscape ecology research. The main issues we identified include: (1) an abundance of UAS methods papers in the existing literature, with comparatively few studies demonstrating how UAS can be applied to address ecological questions; (2) a perceived scale mismatch between the geographic extent of UAS data collection (local) compared to larger study areas (landscapes) and a need to design robust scaling approaches to connect fine-scale UAS data with broader ecological patterns; and (3) a need for improved integration of UAS data with other commonly used remote sensing datasets including historical high resolution aerial imagery. Additionally, researchers new to UAS remote sensing may be discouraged or overwhelmed by the general lack of scientific consensus and standardized protocols for typical tasks such as data collection, vegetation classification, and change detection, as well as restrictive and/or confusing policy, regulatory, and legal issues surrounding UAS operations (Villarreal et al. 2025).

Landscape Ecology↗

USGS1989

Subsurface-water flow and solute transport: federal glossary of selected terms

The purpose of this report is to provide a glossary of selected terms for saturated and unsaturated flow and related processes involved in transport of contaminants in the subsurface. The glossary contains five tables. Table 1 is a list of parameters with associated symbols and units. Tables 2 to 5 are conversion charts. The original manuscript was prepared by Thomas J. Nicholson, U.S. Nuclear Regulatory Commission. It was subsequently examined by the Ground-Water Glossary Working Group and experts within and outside the Federal Government, whose recommendations were accommodated where appropriate in the glossary. It is hoped that the glossary will aid in the communications between soil scientists, hydrologists, and hydrogeologists. The terms defined in the glossary were selected after an extensive survey of glossaries and reports in the areas of (1) ground-water geology, hydraulics, and chemistry, (2) soil-water physics and chemistry, (3) contaminant transport, (4) unsaturated-zone hydrology, (5) chemistry and transport of solutes, and (6) ground-water quality. Some of the definitions have been modified for clarity from a variety of technical sources. Where more than one definition appears for the selected term, the first one was determined by the working group to be the most appropriate general definition, followed by other, more specialized, definitions. Some terms and definitions are not currently in use by all agencies; however, they are included in the glossary because they can be found in the literature. The reader is encouraged to consult with the original source cited for more explanatory comments. Additional regulatory definitions, which are underlined and are taken directly from the Code of Federal Regulations (CFR) and Federal laws (USC), were added following review by the various Federal agencies in May 1986. The definitions and conversion charts are from two principal sources provided herein. The first is the 11Glossary11 compiled by A. I. Johnson in the 1981 report by the American Society of Testing and Materials titled Permeability and Groundwater Contaminant Transport. The second is Manu a 1 40, 11Ground-water Management, 11 produced by the American Society of Civil Engineers in 1985.

Report↗

USGS2017

Guidance documents: Continued support to improve operations of fish hatcheries and field sites to reduce the impact or prevent establishment of New Zealand Mudsnails and other invasive mollusks

This project tested and revised a risk assessment/management tool authored by Moffitt and Stockton designed to provide hatchery biologists and others a structure to measure risk and provide tools to control, prevent or eliminate invasive New Zealand mudsnails (NZMS) and other invasive mollusks in fish hatcheries and hatchery operations. The document has two parts: the risk assessment tool, and an appendix that summarizes options for control or management. The framework of the guidance document for risk assessment/hatchery tool combines approaches used by the Hazard Analysis and Critical Control Points (HACCP) process with those developed by the Commission for Environmental Cooperation (CEC), of Canada, Mexico, and the United States, in the Tri-National Risk Assessment Guidelines for Aquatic Alien Invasive Species. The framework approach for this attached first document assesses risk potential with two activities: probability of infestation and consequences of infestation. Each activity is treated equally to determine the risk potential. These two activities are divided into seven basic elements that utilize scientific, technical, and other relevant information in the process of the risk assessment. To determine the probability of infestation four steps are used that have scores reported or determined and averaged. This assessment follows a familiar HACCP process to assess pathways of entry, entry potential, colonization potential, spread potential. The economic, environmental and social consequences are considered as economic impact, environmental impact, and social and cultural influences. To test this document, the Principal Investigator worked to identify interested hatchery managers through contacts at regional aquaculture meetings, fish health meetings, and through the network of invasive species managers and scientists participating in the Western Regional Panel on Aquatic Nuisance Species and the 100th Meridian Initiative's Columbia River Basin Team, and the Western New Zealand Mudsnail Conference in Seattle. Targeted hatchery workshops were conducted with staff at Dworshak National Fish Hatchery Complex (ID), Similkameen Pond, Oroville WA, and Ringold Springs State Hatchery (WA). As a result of communications with hatchery staff, invasive species managers, and on site assessments of hatchery facilities, the document was modified and enhanced. Additional resources were added to keep it up to date. The result is a more simplified tool that can lead hatchery or management personnel through the process of risk assessment and provide an introduction to the risk management and communication process. In addition to the typical HACCP processes, this tool adds steps to rate and consider uncertainty and the weight of evidence regarding options and monitoring results . Uncertainty of outcome exists in most tools that can be used to control or prevent NZMS or other invasive mollusks from infesting an area. In additional this document emphasizes that specific control tools and plans must be tailored to each specific setting to consider the economic, environmental and social influences. From the testing and evaluation process, there was a strong recognition that a number of control and prevention tools previously suggested and reported in the literature from laboratory and small scale trials may not be compatible with regional and national regulations, economic constraints, social or cultural constraints, engineering or water chemistry characteristics of each facility. The options for control are summarized in the second document, Review of Control Measures for Hatcheries Infested with NZMS (Appendix A) that provides sources for additional resources and specific tools, and guidance regarding the feasibility and success of each approach. This tool also emphasizes that management plans need to be adaptive and incorporate oversight from professionals familiar with measuring risks of fish diseases, and treatments (e.g. the fish health practitioners and water quality and effluent management teams). Finally, with such a team, the adaptive management approach must be ongoing, and become a regular component of hatchery operations. Although it was the intent that this two part document would be included as part of the revised National Management and Control Plan for the NZMS proposed by the U.S. Fish and Wildlife Service (USFWS) and others, it is provided as a stand-alone document.

Cooperator Science Series↗

USGS2022

The potential of Prairie Pothole wetlands as an agricultural conservation practice: A synthesis of empirical data

Nutrient pollution causing harmful algal blooms and eutrophication is a major threat to aquatic systems. Throughout North America, agricultural activities are the largest source of excess nutrients entering these systems. Agricultural intensification has also been a driver in the historical removal of depressional wetlands, contributing to increased hydrological connectivity across watersheds, and moving more nutrient runoff into terminal waterbodies such as the Laurentian Great Lakes and Gulf of Mexico. The Prairie Pothole Region of North America (PPR) supports grassland, cropland, wetland, and riverine systems that connect to the Missouri, Mississippi, and Red River Basins. There is a need to synthesize scientific understanding to guide more targeted conservation efforts and better understand knowledge gaps. We reviewed 200 empirical studies and synthesized results from across a minimum of 9 and maximum of 43 wetland basins (depending on the variable data available). We found an average wetland removal rate of nitrate and phosphate of 53% and 68%, respectively. Literature also showed sedimentation rates to be twice as high in wetland basins situated within croplands compared to grasslands. Our synthesis enhances understanding of nutrient processing in wetlands of the PPR and highlights the need for more empirical field-based studies throughout the region.

Iowa, Minnesota, Montana, North Dakota, South Dako↗

USGS2008

Ethoxyresorufin-O-deethylase (EROD) activity in fish as a biomarker of chemical exposure

This review compiles and evaluates existing scientific information on the use, limitations, and procedural considerations for EROD activity (a catalytic measurement of cytochrome P4501A induction) as a biomarker in fish. A multitude of chemicals induce EROD activity in a variety of fish species, the most potent inducers being structural analogs of 2,3,7,8-tetracholordibenzo- p -dioxin. Although certain chemicals may inhibit EROD induction/activity, this interference is generally not a drawback to the use of EROD induction as a biomarker. The various methods of EROD analysis currently in use yield comparable results, particularly when data are expressed as relative rates of EROD activity. EROD induction in fish is well characterized, the most important modifying factors being fish species, reproductive status and age, all of which can be controlled through proper study design. Good candidate species for biomonitoring should have a wide range between basal and induced EROD activity (e.g., common carp, channel catfish, and mummichog). EROD activity has proven value as a biomarker in a number of field investigations of bleached kraft mill and industrial effluents, contaminated sediments, and chemical spills. Research on mechanisms of CYP1A-induced toxicity suggests that EROD activity may not only indicate chemical exposure, but also may also precede effects at various levels of biological organization. A current research need is the development of chemical exposure-response relationships for EROD activity in fish. In addition, routine reporting in the literature of EROD activity in standard positive and negative control material will enhance confidence in comparing results from different studies using this biomarker.

Critical Reviews in Toxicology↗

USGS2014

Quantifying benthic nitrogen fluxes in Puget Sound, Washington: a review of available data

Understanding benthic fluxes is important for understanding the fate of materials that settle to the Puget Sound, Washington, seafloor, as well as the impact these fluxes have on the chemical composition and biogeochemical cycles of marine waters. Existing approaches used to measure benthic nitrogen flux in Puget Sound and elsewhere were reviewed and summarized, and factors for considering each approach were evaluated. Factors for selecting an appropriate approach for gathering information about benthic flux include: availability of resources, objectives of projects, and determination of which processes each approach measures. An extensive search of literature was undertaken to summarize known benthic nitrogen fluxes in Puget Sound. A total of 138 individual flux chamber measurements and 38 sets of diffusive fluxes were compiled for this study. Of the diffusive fluxes, 35 new datasets were located, and new flux calculations are presented in this report. About 65 new diffusive flux calculations are provided across all nitrogen species (nitrate, NO 3 - ; nitrite, NO 2 - ; ammonium, NH 4 + ). Data analysis of this newly compiled benthic flux dataset showed that fluxes beneath deep (greater than 50 meters) water tended to be lower than those beneath shallow (less than 50 meters) water. Additionally, variability in flux at the shallow depths was greater, possibly indicating a more dynamic interaction between the benthic and pelagic environments. The overall range of bottom temperatures from studies in the Puget Sound area were small (5–16 degrees Celsius), and only NH 4 + flux showed any pattern with temperature. For NH 4 + , flux values and variability increased at greater than about 12 degrees Celsius. Collection of additional study site metadata about environmental factors (bottom temperature, depth, sediment porosity, sediment type, and sediment organic matter) will help with development of a broader regional understanding benthic nitrogen flux in the Puget Sound.

Washington↗

USGS2013

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Northeast Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Connecticut, Delaware, Maine, Maryland, Massachuse↗

USGS2013

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Southwest Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Arizona, California, Colorado, Nevada, New Mexico,↗

USGS2013

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Midwest Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗

USGS2013

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Southeast Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Alabama, Arkansas, Florida, Georgia, Kentucky, Lou↗

USGS2013

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Great Plains Regional Information Sheet.

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Kansas, Montana, Nebraska, North Dakota, Oklahoma,↗

USGS2013

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Pacific Northwest Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Idaho, Oregon, Washington↗

USGS1966

Dawsonite in the green river formation of Colorado

Dawsonite NaAl(OH)2C03 is a rare mineral that occurs in relative abundance over hundreds of square miles in the Piceance Creek Basin of northwestern Colorado, as a rock-forming constituent of the oil shales in the green River Formation. In some specimens it makes up 25 percent by weight of the shale. Containing 35 percent of acid-soluble A1203, it has been viewed as a potential ore of aluminum. The dawsonite extends through 700 feet of continuous section of high-grade oil shale (averaging 25 gallons per ton), which may be as much as 1,500 feet in thickness. Its distribution, areally and stratigraphically, is reviewed; methods for its identification, and for its quantitative determination in the oil shale, with special reference to X-ray diffraction procedures are described; and the geochemistry of dawsonite, as it relates to the origin of the mineral, is considered. The scattered literature on dawsonite is briefly summarized. © 1966 Society of Economic Geologists, Inc..

Colorado↗

USGS2013

A review of fire effects on vegetation and soils in the Great Basin region: response and ecological site characteristics

This review synthesizes the state of knowledge on fire effects on vegetation and soils in semi-arid ecosystems in the Great Basin Region, including the central and northern Great Basin and Range, Columbia River Basin, and the Snake River Plain. We summarize available literature related to: (1) the effects of environmental gradients, ecological site, and vegetation characteristics on resilience to disturbance and resistance to invasive species; (2) the effects of fire on individual plant species and communities, biological soil crusts, seed banks, soil nutrients, and hydrology; and (3) the role of fire severity, fire versus fire surrogate treatments, and post-fire grazing in determining ecosystem response. From this, we identify knowledge gaps and present a framework for predicting plant successional trajectories following wild and prescribed fires and fire surrogate treatments. Possibly the three most important ecological site characteristics that influence a site’s resilience (ability of the ecological site to recover from disturbance) and resistance to invasive species are soil temperature/moisture regimes and the composition and structure of vegetation on the ecological site just prior to the disturbance event.

Columbia River Basin;Great Basin↗