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USGS2007

Analysis of the sea otter ( Enhydra lutris ) reproductive tract: A methods manual

Reproduction in the female sea otter, Enhydra lutris, was relatively unstudied until Sinha et al. (1966) examined 140 reproductive tracts collected 1955-62 and used their findings to describe sea otter reproductive anatomy and biology. Two years later Sinha and Conaway (1968) published a more detailed paper on the ovary of the sea otter. These descriptive papers have been used as the basis for all subsequent studies of sea otter reproductive tracts. During biological collections of sea otters in the 1960s and 70s a large number of female carcasses became available to wildlife biologists. Using Sinha’s research, Schneider (1973) analyzed 1,482 female reproductive tracts to determine the timing of reproduction, gestation period, age of sexual maturity, fetal sex ratio and growth rate of otters in the Aleutian Islands. A similar study was conducted by Bodkin et al. (1993) on a sample of 177 females collected after the 1989 Exxon Valdez oil spill. Recently (von Biela 2007) examined 134 reproductive tracts obtained from beachcast and harvested otters across the three Alaskan population stocks as part of a Master’s thesis. As with most life history data, comparisons among and within populations that differ in status relative to equilibrium densities provide useful data with which to test hypotheses about the cause and effects of changes in demographic rates such as reproductive rate. However, in order to make such comparisons, methods used in different periods must be comparable. The purpose of this manual is to explicitly describe how to collect and analyze sea otter reproductive tracts for the determination of reproductive rate, pregnancy rate, percentage of mature females, and timing of reproduction so that the data will be directly comparable to that collected in the past. The techniques presented in this manual have been used to study sea otter populations over the last 50 years, and maintaining such consistency is essential to comparisons in the future. This manual is based on the methods of previous researchers and draws heavily on the published and unpublished works of James Bodkin, Karl Kenyon, Calvin Lensink, Daniel Mulcahy, Karl Schneider, and Akhouri Sinha. Most invaluable to the production of this manual were the direct communications with Karl Schneider and Dan Mulcahy. In each instance, researchers have communicated with each other to attain comparable methods. Recognizing that researchers in the future may not have this luxury, this guide has been produced to preserve the technique. In addition to using this manual, researchers should consult with colleagues experienced in the analysis of mammalian reproductive tracts, preferably specific to sea otters. Individuals are encouraged to contact V. von Biela with any questions. Sea otter reproductive tracts have most commonly come from either intentional sampling through harvests (Sinah et al. 1966, Schneider 1975) or unintentional large scale mortalities (e.g. the 1989 Exxon Valdez oil spill) (Bodkin et al. 1993). Carcasses and reproductive tracts can also be obtained through the collection of fresh beach cast carcasses. Analysis of reproductive tracts should consider the source of carcasses as samples representing either the “living” or “dead” sea otter population, as they may differ in reproductive parameters. In most cases the reproductive tracts are fixed in formalin or frozen (minimum of –20˚C) immediately after collection; both methods are acceptable for later analysis of the tissue. Immediate fixation is preferred as it is a necessary step in analysis. Uteri and ovaries are then examined to determine the current and past reproductive history of each individual. This manual also includes an example datasheet (Appendix A) and glossary (Appendix B).

Technical Report↗

USGS2024

Network connectivity contributes to native small-bodied fish assemblages in the upper Mississippi River system

Effective management and conservation of fishes requires understanding habitat use across multiple life stages while ensuring necessary habitats are both available and accessible. Tributary habitats may play an important role in recruitment and dispersal of fishes in anthropogenically modified rivers such as the Mississippi and Illinois Rivers of the Midwest U.S.A. Identifying source locations that contribute to recruitment of fish populations can determine the importance of connectivity within river networks and pinpoint critical habitats that sustain fish populations. In the Upper Mississippi River System (UMRS), the environments that fish use in early life stages (i.e., natal origin) can be identified using otolith trace element analysis due to stability and distinctness in water chemistry (strontium: calcium [Sr:Ca]) among water bodies that is reflected in otoliths. Here, we used trace element analysis to determine natal origin of six small-bodied fishes including bullhead minnow ( Pimephales vigilax ), emerald shiner ( Notropis atherinoides ), gizzard shad ( Dorosoma cepedianum ), bluegill ( Lepomis macrochirus ), orangespotted sunfish ( Lepomis humilis ), and yellow perch ( Perca flavescens ) across six reaches of the UMRS (Pools 4, 8, 13, 26, the Open River of the Middle Mississippi River, and the La Grange Pool of the Illinois River). Otolith core Sr:Ca for fishes was quantified using laser ablation inductively coupled plasma mass spectrometry. Using the resulting Sr:Ca chemical signatures of otolith cores, natal origin (tributary, immigrant, or potential resident) was determined for individual fish based on family-specific relationships between otolith and water chemistries. We found that all species originated from tributaries and other reaches (i.e., were immigrants) to varying extents, which acted as evidence for network connectivity. Specifically, tributaries contributed up to 48% of individuals at a given reach. In certain reaches, Pool 26 and the Open River reach, up to 80% of individuals in a species immigrated from another mainstem river reach. Network connectivity was also important in both upstream and downstream directions. Contributions from network connectivity varied among species: bullhead minnow used less whereas orangespotted sunfish used more network connectivity than when all species were combined. Further, the use of network connectivity varied spatially where individuals captured in Pool 8 and the La Grange Pool less often and those from Pool 26 and the Open River more often originated from network connectivity compared to the whole assemblage across reaches. These results indicate that species' life history traits probably interacted with the physical environment, which differs spatially, to yield observed recruitment source patterns. Our results show that network connectivity contributes to established assemblages of native small-bodied fishes throughout the UMRS and underscore the role of interjurisdictional management in maintaining network connectivity to sustain fish populations.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

USGS2013

Terrestrial movement patterns of western pond turtles (Actinemys marmorata) in central California

We used radio telemetry to track the terrestrial movements and seasonal habitat use patterns of Western Pond Turtles (Actinemys marmorata) near two ponds in the Carrizo Plain Ecological Reserve, California, USA. We captured 93 turtles in September 2005 and, of these, we tagged three males and six females(weighing > 300 g) with external transmitters. Tagged turtles traveled from 255–1,096 m over the 448-day study, and we found none further than 343 m from ponds. All turtles moved away from the ponds as water levels receded in the fall, resulting in periods of terrestrial overwintering ranging from 10–30 weeks (74–202 d). We found no evidence for group migrations as turtles departed ponds over 2–8 week periods, moved in different directions from their ponds, and used different habitats. Turtles overwintered mainly in oak and chaparral vegetation communities, which constituted most of the local vegetation. We found overwintering turtles in a variety of microhabitats, but all turtles were on the surface with their carapace just visible amongst the duff layer. Turtles returned to ponds over several weeks, sometimes months after they refilled with winter rains. In the winter of 2006–2007, no turtles returned to terrestrial overwintering sites used the previous year. Most of the turtles we tracked spent over half of each year on land, demonstrating the importance of terrestrial habitats around these seasonal ponds. This pattern is similar to pond turtles living in streams (overwinter on land), as compared to permanent ponds (turtles often remain in water).

California↗

USGS2015

Hydro-bio-geomechanical properties of hydrate-bearing sediments from Nankai Trough

Natural hydrate-bearing sediments from the Nankai Trough, offshore Japan, were studied using the Pressure Core Characterization Tools (PCCTs) to obtain geomechanical, hydrological, electrical, and biological properties under in situ pressure, temperature, and restored effective stress conditions. Measurement results, combined with index-property data and analytical physics-based models, provide unique insight into hydrate-bearing sediments in situ. Tested cores contain some silty-sands, but are predominantly sandy- and clayey-silts. Hydrate saturations S h range from 0.15 to 0.74, with significant concentrations in the silty-sands. Wave velocity and flexible-wall permeameter measurements on never-depressurized pressure-core sediments suggest hydrates in the coarser-grained zones, the silty-sands where S h exceeds 0.4, contribute to soil-skeletal stability and are load-bearing. In the sandy- and clayey-silts, where S h < 0.4, the state of effective stress and stress history are significant factors determining sediment stiffness. Controlled depressurization tests show that hydrate dissociation occurs too quickly to maintain thermodynamic equilibrium, and pressure–temperature conditions track the hydrate stability boundary in pure-water, rather than that in seawater, in spite of both the in situ pore water and the water used to maintain specimen pore pressure prior to dissociation being saline. Hydrate dissociation accompanied with fines migration caused up to 2.4% vertical strain contraction. The first-ever direct shear measurements on never-depressurized pressure-core specimens show hydrate-bearing sediments have higher sediment strength and peak friction angle than post-dissociation sediments, but the residual friction angle remains the same in both cases. Permeability measurements made before and after hydrate dissociation demonstrate that water permeability increases after dissociation, but the gain is limited by the transition from hydrate saturation before dissociation to gas saturation after dissociation. In a proof-of-concept study, sediment microbial communities were successfully extracted and stored under high-pressure, anoxic conditions. Depressurized samples of these extractions were incubated in air, where microbes exhibited temperature-dependent growth rates.

Journal of Marine and Petroleum Geology↗

USGS2021

Sediment mobility and river corridor assessment for a 140-kilometer segment of the main-stem Klamath River below Iron Gate Dam, California

This river corridor assessment documents sediment mobility and river response to flood disturbance along a 140-kilometer segment of the main-stem Klamath River below Iron Gate Dam, California. Field and remote sensing methods were used to assess fundamental indicators of active sediment transport and river response to a combination of natural runoff events and reservoir releases during the study period from 2005 to 2019. Discharge measurements at two gaged sites and bed-material samples at two ungaged sites provided direct and indirect evidence of mobile bed conditions, scour and fill, and surface flushing of fine sediment. Available remote-sensing datasets collected in 2005, 2009, 2010, and 2016 were used to determine sediment storage, flood inundation boundaries, and provide indirect evidence of flood-induced scour. These datasets validate channel-maintenance flows defined by Shea and others (2016). During the study period, flows greater than or equal to 6,030 cubic feet per second mobilized the substrate, caused localized scour, and flushed fine sediment from bar surfaces. Flows greater than or equal to 10,400 cubic feet per second stripped vegetation from bars and floodplains and produced deeper scour. Flood disturbance within the study reach is produced by the combined effect of natural flows and reservoir releases, which resulted in mobile bed conditions during the study period. Periodic scour and substrate disturbance are considered by the U.S. Fish and Wildlife Service to be integral for managing disease-induced mortality of juvenile and adult salmonids. Substrate conditions conducive to parasites that host infectious diseases, particularly Ceratonova shasta, occur periodically. Additional studies are required to determine whether disease prevalence can be mitigated by well-timed reservoir releases. Study results are useful for interpreting linkages among physical and biological processes and for evaluating the effectiveness of flow management targeted to improve river bed conditions for endangered salmonid populations.

California↗

USGS1997

Food consumption and retention time in captive whooping cranes (Grus americana)

Food consumption, digesta retention time, and food preference were measured for captive whooping cranes fed pelleted diets. The basal commercial diet was compared to four mixtures containing 70% basal and 30% of one of four important winter foods for the whooping crane: blue crab ( Callinectes sapidus ), wolfberry fruit ( Lycium carolinianum ), live oak acorn ( Quercus virginiana ), or common Rangia clam ( Rangia cuneata ). Because captive birds would not eat whole foods, we were prevented from direct food preference tests. Food passed through the gut rapidly, with almost complete elimination within 7 hr. There was some indication that retention time was shorter for the low fiber and high ash and calcium clam diet. Cranes ate less wolfberry feed (g/day) than the other feeds, and all birds ate less wolfberry feed on the day it was first fed, compared to basal diet the previous day. Birds ate more low energy feed than high energy feed. Due to combined effects of low energy content, lower metabolizable energy coefficients, and reduced feed consumption, less energy was assimilated for study diets than basal diet. Apparent shorter retention times for some diets containing whooping crane foods may partly explain lower digestibilities and metabolizable energy of winter whooping crane foods compared to commercial crane diet.

Zoo Biology↗

USGS2013

Eco-evolutionary responses of Bromus tectorum to climate change: implications for biological invasions

How plant populations, communities, and ecosystems respond to climate change is a critical focus in ecology today. The responses of introduced species may be especially rapid. Current models that incorporate temperature and precipitation suggest that future Bromus tectorum invasion risk is low for the Colorado Plateau. With a field warming experiment at two sites in southeastern Utah, we tested this prediction over 4 years, measuring B. tectorum phenology, biomass, and reproduction. In a complimentary greenhouse study, we assessed whether changes in field B. tectorum biomass and reproductive output influence offspring performance. We found that following a wet winter and early spring, the timing of spring growth initiation, flowering, and summer senescence all advanced in warmed plots at both field sites and the shift in phenology was progressively larger with greater warming. Earlier green-up and development was associated with increases in B. tectorum biomass and reproductive output, likely due early spring growth, when soil moisture was not limiting, and a lengthened growing season. Seeds collected from plants grown in warmed plots had higher biomass and germination rates and lower mortality than seeds from ambient plots. However, in the following two dry years, we observed no differences in phenology between warmed and ambient plots. In addition, warming had a generally negative effect on B. tectorum biomass and reproduction in dry years and this negative effect was significant in the plots that received the highest warming treatment. In contrast to models that predict negative responses of B. tectorum to warmer climate on the Colorado Plateau, the effects of warming were more nuanced, relied on background climate, and differed between the two field sites. Our results highlight the importance of considering the interacting effects of temperature, precipitation, and site-specific characteristics such as soil texture, on plant demography and have direct implications for B. tectorum invasion dynamics on the Colorado Plateau.

Utah↗

USGS2019

Isotopic evidence that nitrogen enrichment intensifies nitrogen losses to the atmosphere from subtropical mangroves

Nitrogen (N) enrichment can have large effects on mangroves’ capacity to provide critical ecosystem services by affecting fundamental functions such as N cycling and primary productivity. However, our understanding of excess N input effects on N cycling in mangroves remains quite limited. To advance our understanding of how N enrichment via water or air pollution affects mangroves, we evaluated whether increasing N inputs would decrease biological N fixation (BNF), but intensify N dynamics and N losses to the atmosphere in these systems. We measured N concentrations in sediment and vegetation, rates of BNF in sediment and litter, and net sediment ammonification and nitrification rates. We also evaluated long-term integrated N dynamics and N losses to the atmosphere using the natural abundance of N stable isotopes (δ 15 N) in the sediment–plant system and in estuarine water. We performed these analyses at non-N-enriched and N-enriched (that is, polluted) fringe and basin mangroves in southeastern Brazil. The δ 15 N in the sediment–plant system was higher at N-enriched than non-N-enriched fringe sites, indicating increased N losses to the atmosphere from N-enriched sites. However, N concentrations in sediment and vegetation were similar or lower at N-enriched relative to non-N-enriched sites. BNF and net ammonification and nitrification rates were also similar between N-enriched and non-N-enriched sites. Excess N inputs intensified N losses to the atmosphere from mangroves, but N pools, BNF, and net ammonification and nitrification rates were not affected by N enrichment, likely because excess N was quickly lost from the system by direct denitrification and volatilization.

São Paulo↗

USGS2019

Integrating amphibian movement studies across scales better informs conservation decisions

Numerous papers have highlighted the need to integrate amphibian research and conservation across multiple scales. Despite this, most amphibian movement studies focus on a single level of organization (e.g., local population) and a single life stage (e.g., adults) and many suggest potential conservation actions or imply that the information is useful to conservation, yet these presumptions are rarely clarified or tested. Movement studies to date provide little information to guide conservation decisions directly because they fail to integrate movement across scales with individual or population parameters (i.e., fitness metrics); this is exacerbated by a general failure to set movement studies in a probabilistic context. An integrative approach allows prediction of population or metapopulation responses to environmental changes and different management actions, thus directly informing conservation decisions and ‘moving the needle’ towards an informed application of conservation actions. To support this perspective we: 1) revisit reviews of amphibian movement to illustrate the focus on single scales and to underscore the importance of movement – at all scales – to conservation; 2) make the case that movement, breeding, and other demographic probabilities are intertwined and studies executed at different temporal and spatial scales can aid in understanding species' responses to varying environmental and/or management conditions; 3) identify limitations of existing movement-related research to predict conservation action outcomes and inform decision-making; and 4) highlight under-utilized quantitative approaches that facilitate research that either connects movement to fitness metrics (individual-level studies) or estimates population and metapopulation vital rates in addition to, or associated with, movement probabilities.

Biological Conservation↗

USGS1997

Assimilation efficiencies and turnover rates of trace elements in marine bivalves: A comparison of oysters, clams and mussels

Assimilation efficiencies (AEs) and physiological turnover-rate constants ( k ) of six trace elements (Ag, Am, Cd, Co, Se, Zn) in four marine bivalves ( Crassostrea virginica Gmelin, Macoma balthica Linnaeus, Mercenaria mercenaria Linnaeus, and Mytilus edulis Linnaeus) were measured in radiotracer-depuration experiments. Egestion rates of unassimilated elements were highest during the first 24 h of depuration and declined thereafter. Significant egestion of unassimilated Co, however, continued for up to 5 d in Macoma balthica , Mercenaria mercenaria and Mytilus edulis . With the exception of the extremely low values for 110 m Ag, 109 Cd, and 65 Zn in C. virginica , physiological turnover-rate constants ( k ) showed no general pattern of variation among elements, bivalve species or food types, and were relatively invariant. Values from  ≤0.001 to 0.1 d −1 were observed, but excluding those for Co, most values were  ≤0.04 d −1 . In all four species, the AEs of Ag, Am, and Co were generally lower than those of Cd, Se, and Zn. The AEs of Ag, Cd, Se, and Zn in these bivalves are directly related to the proportion of each element in the cytoplasmic fraction of ingested phytoplankton, indicating that >80% of elements in a prey alga's cytoplasm was assimilated. C. virginica , Macoma balthica , and Mercenaria mercenaria assimilated &sim;36% of the Ag and Cd associated with the non-cytoplasmic (membrane/organelle) fraction of ingested cells in addition to the cytoplasmic fraction. The ratio of AE: k , which is proportional to the consumer–prey trace-element bioaccumulation factor (concentration in consumer:concentration in prey) was generally greater for Cd, Se, and Zn than for Ag, Am, and Co. This ratio was lowest in Mytilus edulis , suggesting that this bivalve, the most widely employed organism in global biomonitoring, is relatively inefficient at accumulating important elements such as Ag, Cd, and Zn from ingested phytoplankton.

Marine Biology↗

USGS2024

Reframing wildlife disease management problems with decision analysis

Contemporary wildlife disease management is complex because managers need to respond to a wide range of stakeholders, multiple uncertainties, and difficult trade-offs that characterize the interconnected challenges of today. Despite general acknowledgment of these complexities, managing wildlife disease tends to be framed as a scientific problem, in which the major challenge is lack of knowledge. The complex and multifactorial process of decision-making is collapsed into a scientific endeavor to reduce uncertainty. As a result, contemporary decision-making may be oversimplified, rely on simple heuristics, and fail to account for the broader legal, social, and economic context in which the decisions are made. Concurrently, scientific research on wildlife disease may be distant from this decision context, resulting in information that may not be directly relevant to the pertinent management questions. We propose reframing wildlife disease management challenges as decision problems and addressing them with decision analytical tools to divide the complex problems into more cognitively manageable elements. In particular, structured decision-making has the potential to improve the quality, rigor, and transparency of decisions about wildlife disease in a variety of systems. Examples of management of severe acute respiratory syndrome coronavirus 2, white-nose syndrome, avian influenza, and chytridiomycosis illustrate the most common impediments to decision-making, including competing objectives, risks, prediction uncertainty, and limited resources.

Conservation Biology↗

USGS2021

The extent and variability of storm‐induced temperature changes in lakes measured with long‐term and high‐frequency data

The intensity and frequency of storms are projected to increase in many regions of the world because of climate change. Storms can alter environmental conditions in many ecosystems. In lakes and reservoirs, storms can reduce epilimnetic temperatures from wind‐induced mixing with colder hypolimnetic waters, direct precipitation to the lake's surface, and watershed runoff. We analyzed 18 long‐term and high‐frequency lake datasets from 11 countries to assess the magnitude of wind‐ vs. rainstorm‐induced changes in epilimnetic temperature. We found small day‐to‐day epilimnetic temperature decreases in response to strong wind and heavy rain during stratified conditions. Day‐to‐day epilimnetic temperature decreased, on average, by 0.28°C during the strongest windstorms (storm mean daily wind speed among lakes: 6.7 ± 2.7 m s −1 , 1 SD) and by 0.15°C after the heaviest rainstorms (storm mean daily rainfall: 21.3 ± 9.0 mm). The largest decreases in epilimnetic temperature were observed ≥2 d after sustained strong wind or heavy rain (top 5 th percentile of wind and rain events for each lake) in shallow and medium‐depth lakes. The smallest decreases occurred in deep lakes. Epilimnetic temperature change from windstorms, but not rainstorms, was negatively correlated with maximum lake depth. However, even the largest storm‐induced mean epilimnetic temperature decreases were typically <2°C. Day‐to‐day temperature change, in the absence of storms, often exceeded storm‐induced temperature changes. Because storm‐induced temperature changes to lake surface waters were minimal, changes in other limnological variables (e.g., nutrient concentrations or light) from storms may have larger impacts on biological communities than temperature changes.

Limnology and Oceanography↗

USGS2005

Environmental stresses and skeletal deformities in fish from the Willamette River, Oregon

The Willamette River, one of 14 American Heritage Rivers, flows through the most densely populated and agriculturally productive region of Oregon. Previous biological monitoring of the Willamette River detected elevated frequencies of skeletal deformities in fish from certain areas of the lower (Newberg pool [NP], rivermile [RM] 26−55) and middle (Wheatland Ferry [WF], RM 72−74) river, relative to those in the upper river (Corvallis [CV], RM 125−138). The objective of this study was to determine the likely cause of these skeletal deformities. In 2002 and 2003, deformity loads in Willamette River fishes were 2−3 times greater at the NP and WF locations than at the CV location. There were some differences in water quality parameters between the NP and CV sites, but they did not readily explain the difference in deformity loads. Concentrations of bioavailable metals were below detection limits (0.6−1 μg/L). Concentrations of bioavailable polychlorinated biphenyls (PCBs) and chlorinated pesticides were generally below 0.25 ng/L. Concentrations of bioavailable polycyclic aromatic hydrocarbons were generally less than 5 ng/L. Concentrations of most persistent organic pollutants were below detection limits in ovary/oocyte tissue samples and sediments, and those that were detected were not significantly different among sites. Bioassay of Willamette River water extracts provided no evidence that unidentified compounds or the complex mixture of compounds present in the extracts could induce skeletal deformities in cyprinid fish. However, metacercariae of a digenean trematode were directly associated with a large percentage of deformities detected in two Willamette River fishes, and similar deformities were reproduced in laboratory fathead minnows exposed to cercariae extracted from Willamette River snails. Thus, the weight of evidence suggests that parasitic infection, not chemical contaminants, was the primary cause of skeletal deformities observed in Willamette River fish.

Oregon↗

USGS2011

Fate of 4-nonylphenol and 17β-estradiol in the Redwood River of Minnesota

The majority of previous research investigating the fate of endocrine-disrupting compounds has focused on single processes generally in controlled laboratory experiments, and limited studies have directly evaluated their fate and transport in rivers. This study evaluated the fate and transport of 4-nonylphenol, 17β-estradiol, and estrone in a 10-km reach of the Redwood River in southwestern Minnesota. The same parcel of water was sampled as it moved downstream, integrating chemical transformation and hydrologic processes. The conservative tracer bromide was used to track the parcel of water being sampled, and the change in mass of the target compounds relative to bromide was determined at two locations downstream from a wastewater treatment plant effluent outfall. In-stream attenuation coefficients ( k stream ) were calculated by assuming first-order kinetics (negative values correspond to attenuation, whereas positive values indicate production). Attenuation of 17β-estradiol ( k stream = −3.2 ± 1.0 day –1 ) was attributed primarily due to sorption and biodegradation by the stream biofilm and bed sediments. Estrone ( k stream = 0.6 ± 0.8 day –1 ) and 4-nonylphenol ( k stream = 1.4 ± 1.9 day –1 ) were produced in the evaluated 10-km reach, likely due to biochemical transformation from parent compounds (17β-estradiol, 4-nonylphenolpolyethoxylates, and 4-nonyphenolpolyethoxycarboxylates). Despite attenuation, these compounds were transported kilometers downstream, and thus additive concentrations from multiple sources and transformation of parent compounds into degradates having estrogenic activity can explain their environmental persistence and widespread observations of biological disruption in surface waters.

Minnesota↗

USGS2010

Testing the limits of Paleozoic chronostratigraphic correlation via high-resolution (<500 k.y.) integrated conodont, graptolite, and carbon isotope (δ 13 C carb ) biochemostratigraphy across the Llandovery–Wenlock (Silurian) boundary: Is a unified Phanerozoic time scale achievable?

The resolution and fidelity of global chronostratigraphic correlation are direct functions of the time period under consideration. By virtue of deep-ocean cores and astrochronology, the Cenozoic and Mesozoic time scales carry error bars of a few thousand years (k.y.) to a few hundred k.y. In contrast, most of the Paleozoic time scale carries error bars of plus or minus a few million years (m.y.), and chronostratigraphic control better than ??1 m.y. is considered "high resolution." The general lack of Paleozoic abyssal sediments and paucity of orbitally tuned Paleozoic data series combined with the relative incompleteness of the Paleozoic stratigraphic record have proven historically to be such an obstacle to intercontinental chronostratigraphic correlation that resolving the Paleozoic time scale to the level achieved during the Mesozoic and Cenozoic was viewed as impractical, impossible, or both. Here, we utilize integrated graptolite, conodont, and carbonate carbon isotope (??13Ccarb) data from three paleocontinents (Baltica, Avalonia, and Laurentia) to demonstrate chronostratigraphic control for upper Llando very through middle Wenlock (Telychian-Sheinwoodian, ~436-426 Ma) strata with a resolution of a few hundred k.y. The interval surrounding the base of the Wenlock Series can now be correlated globally with precision approaching 100 k.y., but some intervals (e.g., uppermost Telychian and upper Shein-woodian) are either yet to be studied in sufficient detail or do not show sufficient biologic speciation and/or extinction or carbon isotopic features to delineate such small time slices. Although producing such resolution during the Paleozoic presents an array of challenges unique to the era, we have begun to demonstrate that erecting a Paleozoic time scale comparable to that of younger eras is achievable. ?? 2010 Geological Society of America.

Geological Society of America Bulletin↗

USGS2022

Using microbial source tracking to identify contamination sources in Port Jefferson Harbor, Setauket Harbor, and Conscience Bay on Long Island, New York

The U.S. Geological Survey worked in cooperation with the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering Port Jefferson Harbor, Setauket Harbor, and Conscience Bay, an embayment complex on the northern shore of Suffolk County, Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the harbor and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, and surrounding land use where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Our analysis revealed that the most substantial source of fecal contamination to the Port Jefferson Harbor complex was discharge from sites draining ponds and wetlands, particularly during the summer months. Fecal coliform bacteria at sites where ponds and wetlands drain are increased by stormwater runoff, which is another substantial source of fecal contamination. Human markers, likely originating from the outfall of the Port Jefferson sewage treatment plant, were found at least once in every sample collected within Port Jefferson Harbor; however, fecal coliform concentrations were low, indicating that the sewage treatment plant is not a likely source of fecal contamination to the embayment. Canine markers detected in Conscience Bay were associated with high fecal coliform, particularly in wet summer samples. Waterfowl markers were most often detected in source water for Port Jefferson Harbor, but in Conscience Bay, waterfowl was frequently detected within the bay itself. Resuspension of bed sediment may contribute to fecal contamination in the harbor, but more targeted analyses are needed to support this finding. There was little evidence of groundwater-contributing fecal bacteria by direct discharge from the subsurface. A classification scheme was developed to convey the degree of fecal contamination to stakeholders and resource managers. Based on this classification scheme, the Culvert North of State Route 25A, Culvert North of Shore Road, Old Mill Creek Culvert, and Mill Pond Culvert to Conscience Bay sites were identified as locations that contribute substantial fecal contamination to the Port Jefferson Harbor complex.

New York↗

USGS2004

Writing refuge management goals and objectives: a handbook

Goals and objectives are the unifying elements of successful refuge management. They identify and focus management priorities, provide a context for resolving issues, guide specific projects, provide rationale for decisions, and offer a defensible link among management actions, refuge purpose(s), Service policy, and the National Wildlife Refuge System (Refuge System) mission. Pursuant to Refuge Planning Policy (602 FW 1, 3, 4), this handbook offers guidance on how to write goals and objectives for national wildlife refuges and provides counsel on their development. While the handbook specifically addresses biology and visitor services, you can also utilize this guidance when developing goals and objectives for other refuge programs. Several assumptions are basic to this handbook. The handbook focuses on the mechanics of writing sound goals and objectives. Detailed guidance on what information to consider, collect, interpret, and synthesize into goals and objectives is beyond the scope of this handbook. It views a vision statement as the synthesis of a refuge’s purpose(s), the Refuge System mission and goals, and other biological, legal, and social concerns in which the refuge has a role. It also assumes a familiarity with the hierarchical nature of planning and where, within a planning process, the writing of goals and objectives occurs. This guidance applies to conceptual management plans, comprehensive conservation plans (CCPs), step-down management plans (e.g., habitat management, visitor services, fire management), or any other planning document incorporating goals and objectives, including strategic documents developed under the Government Performance and Results Act. We intend this guidance for use by an internal audience tasked with writing refuge goals and objectives, primarily refuge managers, biologists, visitor services specialists, planners, and other members of refuge planning teams. Still, it recognizes that we should write goals and objectives so that interested members of the public can understand them, to the extent this does not jeopardize the technical accuracy or reduce the inclusion of necessary information. The terminology and definitions used in this handbook are widely accepted in the planning field and are not inconsistent with more recent application in strategic planning. Perhaps most important, the handbook presumes all goals and objectives must further the specific purpose(s) of the refuge and the broader mission of the Refuge System, as well as be consistent with Refuge Planning Policy and any other relevant Service policy and directives.

Report↗

USGS2010

Hydrological connectivity for riverine fish: measurement challenges and research opportunities

In this review, we first summarize how hydrologic connectivity has been studied for riverine fish capable of moving long distances, and then identify research opportunities that have clear conservation significance. Migratory species, such as anadromous salmonids, are good model organisms for understanding ecological connectivity in rivers because the spatial scale over which movements occur among freshwater habitats is large enough to be easily observed with available techniques; they are often economically or culturally valuable with habitats that can be easily fragmented by human activities; and they integrate landscape conditions from multiple surrounding catchment(s) with in‐river conditions. Studies have focussed on three themes: (i) relatively stable connections (connections controlled by processes that act over broad spatio‐temporal scales >1000 km 2 and >100 years); (ii) dynamic connections (connections controlled by processes acting over fine to moderate spatio‐temporal scales ∼1–1000 km 2 and <1–100 years); and (iii) anthropogenic influences on hydrologic connectivity, including actions that disrupt or enhance natural connections experienced by fish. We outline eight challenges to understanding the role of connectivity in riverine fish ecology, organized under three foci: (i) addressing the constraints of river structure; (ii) embracing temporal complexity in hydrologic connectivity; and (iii) managing connectivity for riverine fishes. Challenges include the spatial structure of stream networks, the force and direction of flow, scale‐dependence of connectivity, shifting boundaries, complexity of behaviour and life histories and quantifying anthropogenic influence on connectivity and aligning management goals. As we discuss each challenge, we summarize relevant approaches in the literature and provide additional suggestions for improving research and management of connectivity for riverine fishes. Specifically, we suggest that rapid advances are possible in the following arenas: (i) incorporating network structure and river discharge into analyses; (ii) increasing explicit consideration of temporal complexity and fish behaviour in the scope of analyses; and (iii) parsing degrees of human and natural influences on connectivity and defining acceptable alterations. Multiscale analyses are most likely to identify dominant patterns of connections and disconnections, and the appropriate scale at which to focus conservation activities.

Freshwater Biology↗