SEARCH · Geology Reports

Results for “Animals”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 721 records · Page 40Linked to original sources

USGS1987

Feeding ecology of northern pintails and green-winged teal wintering in California

The feeding ecology of northern pintails (Anas acuta) and green-winged teal (A. crecca) was examined from October through February 1979-81 in 4 major seasonal marsh types in the Central Valley, California. The esophagi of 262 pintails contained 72.3% plant seeds and 27.7% animal matter. The esophagi of 173 green-winged teal contained 62.3% plant seeds and 37.6% animal matter. Swamp timothy (Heleochloa schoenoides) caryopses, chironomid midge larvae, and common barnyardgrass (Echinochloa crusgalli) caryopses formed >50% of the diet of both species. Both species were highly opportunistic and generally shifted their food habits seasonally to the most available foods. Animal matter increased seasonally in the diets of both and formed about 60% of the foods eaten during January and February compared to only about 8% in October and 17% in December. Both species used open water marsh habitats almost exclusively in daytime but they used densely vegetated marshes almost exclusively at night. Management recommendations based on the food habits and habitat use patterns of pintails and green-winged teal are offered.

Journal of Wildlife Management↗

USGS2015

Mortality estimation from carcass searches using the R-package carcass: a tutorial

This article is a tutorial for the R-package carcass . It starts with a short overview of common methods used to estimate mortality based on carcass searches. Then, it guides step by step through a simple example. First, the proportion of animals that fall into the search area is estimated. Second, carcass persistence time is estimated based on experimental data. Third, searcher efficiency is estimated. Fourth, these three estimated parameters are combined to obtain the probability that an animal killed is found by an observer. Finally, this probability is used together with the observed number of carcasses found to obtain an estimate for the total number of killed animals together with a credible interval.

Wildlife Biology↗

USGS2018

Chronic wasting disease detection and mortality sources in semi-protected deer population

Surveillance for wildlife diseases is essential for assessing population dynamics of ungulates, especially in free-ranging populations where infected animals are difficult to sample. Chronic wasting disease (CWD) is an emerging infectious disease of concern because of the potential for substantial negative effects on populations of cervids. Variability in the likelihood that CWD is detected could invalidate traditional estimators for prevalence. In some instances, deer located after death cannot be tested for infectious diseases, including CWD, because of lack of availability or condition of appropriate tissues. We used various methods to detect infectious diseases that could cause mortality for deer Odocoileus spp. residing in Wind Cave National Park, South Dakota, USA, and we report survival estimates for animals in this population. We included 34 monthly encounters of deer resightings and 67 mortalities. We tested live deer by tonsillar biopsy for CWD and estimated pooled prevalence (mean ± SE) at 5.6 ± 3.0% over the three-year study. Live deer potentially had exposure to several infectious diseases, including bluetongue, epizootic hemorrhagic disease, bovine viral diarrhea, West Nile virus, and malignant catarrhal fever, but no apparent morbidity or mortality from those diseases. We tested survival and influence of covariates, including age and sex, using known-fate analysis in Program MARK. Those data best supported a model with time-invariant encounter probability and an annual survival of 72.8%. Even without direct pressure from hunting within the park, average life expectancy in this population was 3.2 years. Only 68% of mortalities contained sufficient material for CWD sampling (because of predation and scavenger activity) and >42% of these were CWD-positive. These findings underscore the possible biases in postmortem surveillance estimates of disease prevalence because of potential for subclinical infected animals to be removed by predators and not tested.

South Dakota↗

USGS2017

Monitoring eradication of European mouflon sheep from the Kahuku Unit of Hawai‘i Volcanoes National Park

European mouflon ( Ovis gmelini musimon ), the world's smallest wild sheep, have proliferated and degraded fragile native ecosystems in the Hawaiian Islands through browsing, bark stripping, and trampling, including native forests within Hawai‘i Volcanoes National Park (HAVO). HAVO resource managers initiated ungulate control efforts in the 469 km 2 Kahuku Unit after it was acquired in 2003. We tracked control effort and used aerial surveys in a 64.7 km 2 area from 2004 to 2017 and more intensive ground surveys and camera-trap monitoring to detect the last remaining animals within a 25.9 km 2 subunit after it was enclosed by fence in 2012. Aerial shooting yielded the most removals per unit effort (3.2 animals/ hour), resulting in 261 animals. However, ground-based methods yielded 4,607 removals overall, 3,038 of which resulted from assistance of volunteers. Ground shooting with dogs, intensive aerial shooting, ground sweeps, and forward-looking infrared (FLIR)-assisted shooting were necessary to find and remove the last remaining mouflon. The Judas technique, baiting, and trapping were not successful in attracting or detecting small numbers of remaining individuals. Effort expended to remove each mouflon increased nearly 15-fold during the last 3 yr of eradication effort from 2013 to 2016. Complementary active and passive monitoring techniques allowed us to track the effectiveness of control effort and reveal locations of small groups to staff. The effort and variety of methods required to eradicate mouflon from an enclosed unit of moderate size illustrates the difficulty of scaling up to entire populations of wild ungulates from unenclosed areas.

Hawai'i↗

USGS2009

Bat Rabies and Other Lyssavirus Infections

Bat Rabies and Other Lyssavirus Infections offers readers an overview of the virus variants that cause bat rabies, and geographical patterns in occurrence of this disease. The section Species Susceptibility describes infection rates and trends among bats, humans, and other animals. Disease Ecology considers the biological and environmental dynamics of the disease in various species of bats. Points to Ponder: Interspecies Interactions in Potential Bat Rabies Transmission Settings discusses the narrowing interface of bat colonies and human society and how humans and domestic animals play a role in transmission of bat rabies. Disease Prevention and Control outlines how to limit exposure to rabid bats and other animals. Appendixes include extensive tables of reported infections in bat species and in humans, and a glossary of technical terms is included. The author, Denny G. Constantine, helped define rabies infection in insect-eating bats and has investigated bat rabies ecology for more than half a century. He has authored more than 90 papers during the course of his career and is widely considered to be the world's foremost authority on the disease. Currently, Dr. Constantine is a public health officer emeritus and veterinary epidemiologist for the California Department of Health Services Viral and Rickettsial Disease Laboratory. Milt Friend, first director of the USGS National Wildlife Health Center, wrote the foreword. David Blehert, a USGS microbiologist who is investigating the emergence and causes of bat white-nose syndrome, edited the volume. Bat Rabies is intended for scholars and the general public. Dr. Constantine presents the material in a simple, straightforward manner that serves both audiences. The goal of the author is to increase people's understanding of both bat and disease ecology and also provide a balanced perspective on human risks pertaining to bat rabies.

Circular↗

USGS2024

Interdisciplinary science approach for harmful algal blooms (HABs) and algal toxins—A strategic science vision for the U.S. Geological Survey

Executive Summary Algal blooms in water, soils, dusts, and the environment have captured national attention because of concerns associated with exposure to algal toxins for humans and animals. Algal blooms naturally occur in all surface-water types and are important primary producers for aquatic ecosystems. However, excessive algae growth can be associated with many harmful effects ranging from aesthetic to toxicity concerns, so this excessive growth is commonly called a harmful algal bloom (HAB). Ecological imbalances that can lead to excessive algal growth, such as increased nutrient availability to waterbodies from natural and anthropogenic sources, are well documented in scientific literature. On the other hand, fundamental scientific understandings of environmental causes and controls leading to algal toxin production, environmental exposures, and adverse health outcomes for humans and animals could benefit from more attention by U.S. Geological Survey (USGS) scientists. Understanding when, why, and how the toxin is produced by individual algal cells or communities and why the toxin is released to the surrounding waterbody requires fundamental research to determine a toxin’s role, whether it provides competitive advantage or if other potential reasons exist for toxin production and release, such as secretions from otherwise benign biological processes. This research will require groundbreaking scientific discovery about underlying biologic and abiotic (non-living) processes commonly complicated by local variation in land use, microbial species composition, and ecosystem structure of the surrounding watershed. Although underlying processes by which HABs form may be similar from one waterbody to another, individual waterbodies may be controlled by local factors for HAB development and toxin production that are unique to the watershed. Consequently, many fundamental science gaps exist that prevent informed mitigation and prevention of toxic HAB events. There are also gaps in understanding local conditions that control algal growth unique to specific watersheds. Addressing these science gaps is needed to inform evidence-based decisions that protect human and animal health and that reduce recreational and socioeconomic losses.

Circular↗

USGS2012

Data resources for range-wide assessment of livestock grazing across the sagebrush biome

The data contained in this series were compiled, modified, and analyzed for the U.S. Geological Survey (USGS) report "Range-Wide Assessment of Livestock Grazing Across the Sagebrush Biome." This report can be accessed through the USGS Publications Warehouse (online linkage: http://pubs.usgs.gov/of/2011/1263/). The dataset contains spatial and tabular data related to Bureau of Land Management (BLM) Grazing Allotments. We reviewed the BLM national grazing allotment spatial dataset available from the GeoCommunicator National Integrated Land System (NILS) website in 2007 (http://www.geocommunicator.gov). We identified several limitations in those data and learned that some BLM State and/or field offices had updated their spatial data to rectify these limitations, but maintained the data outside of NILS. We contacted appropriate BLM offices (State or field, 25 in all) to obtain the most recent data, assessed the data, established a data development protocol, and compiled data into a topologically enforced dataset throughout the area of interest for this project (that is, the pre-settlement distribution of Greater Sage-Grouse in the Western United States). The final database includes three spatial datasets: Allotments (BLM Grazing Allotments), OUT_Polygons (nonallotment polygons used to ensure topology), and Duplicate_Polygon_Allotments. See Appendix 1 of the aforementioned report for complete methods. The tabular data presented here consists of information synthesized by the Land Health Standard (LHS) analysis (Appendix 2), and data obtained from the BLM Rangeland Administration System (http://www.blm.gov/ras/). In 2008, available LHS data for all allotments in all regions were compiled by BLM in response to a Freedom of Information Act (FOIA) request made by a private organization. The BLM provided us with a copy of these data. These data provided three major types of information that were of interest: (1) date(s) (if any) of the most recent LHS evaluation for each allotment; (2) whether if evaluated, each region-specific standard (3–8 LHS depending on region) had been met on a given allotment; and (3) whether livestock contributed to any of these standards not being met. A description of how we processed the original data to prepare for analysis is described in Appendix 2, and the synthesized dataset can be found in the table "lhs_x_walk." Permitted use dates, livestock type (horse, sheep or cattle), number of livestock, and Animal Unit Months [the number of animal units (1,000-pound animal equivalents) that can be grazed for 31 days with the available forage in a sustainable manner] are the legal maximum grazing amounts for a given allotment, and legal adjustments to these numbers occur infrequently. We summarized permitted use by BLM allotment in the table "Permitted_Use." Billed use records are used for calculations of permittees' annual grazing bills. We summarized billed use by allotment for BLM grazing year in the table "Billed_Use." All three tables can be joined with the allotment spatial data in a geographic information system (GIS) environment, using the IDENT attribute as the primary key.

Data Series↗

USGS2002

Occurrence of bacteria in Blue Marsh Lake and selected tributaries, Berks County, Pennsylvania: September-October 2001

The Commonwealth of Pennsylvania has water-quality standards that limit the number of specific bacteria in water that is considered safe for recreational use. Bacteria such as fecal streptococci, fecal coliforms, and Escherichia coli (E. coli ) are used to assess recreational water quality because they usually live in the intestines of warm-blooded animals. Fecal indicator bacteria commonly are associated with waterborne disease-causing organisms (pathogens). These indicator bacteria are used routinely as a measure of the quality of water for recreational activities such as swimming, boating, and water skiing. If the indicator bacteria are present, effective measures could be taken to prevent the transmission or epidemic outbreak of waterborne diseases as a result of contamination of these waters from human or animal waste. Blue Marsh Lake is on Tulpehocken Creek in Berks County, Pa., and drains a largely agricultural basin. Land use in the basin is approximately 60 percent cropland, and 85 percent of the farms are livestock and poultry farms. The potential sources of fecal bacteria are: geese that inhabit the recreational areas of the lake, humans that visit the Dry Brooks Day Use Area (swimming area), and farm animals, wastewater facilities, and household septic systems in the basin (bacteria from these sources could enter the lake through tributaries). To meet the recreational water-quality standard, lake water may not have more than 200 colony-forming units (CFU) of fecal coliforms per 100 milliliters (mL). During the week of July 23, 2001, data collected by the U.S. Army Corps of Engineers (USACE) at the swimming area at Blue Marsh Lake showed concentrations of fecal coliforms in the water exceeding the standard. To determine the extent of elevated concentrations of fecal indicator bacteria, further study of the lake and selected tributaries was needed.

Pennsylvania↗

USGS2008

Wild sheep and deer in Hawai'i: a threat to fragile ecosystems

The unique native flora of the Hawaiian Islands, which evolved in the absence of ungulates (grazing animals), is highly vulnerable to damage by trampling and browsing. Wild ungulates introduced into Hawai'i in the past 150 years, including mouflon, axis deer, and mule deer, have severely harmed the native flora. Control measures used against feral animals do not work as well against these wild animals. Trophy hunting tends to alter sex ratios and increase population growth. U.S. Geological Survey scientists are studying these wild ungulates in order to develop more effective control measures that help protect Hawai'i's endemic flora.

Fact Sheet↗

USGS2001

Citizen knowledge and perception of black-tailed prairie dog management: Report to respondents

What do citizens know about black-tailed prairie dogs, and where do they get their information? When management decisions need to be made regarding an animal such as the black-tailed prairie dog, an understanding of the species and its relationship to humans is necessary. This includes knowing the biology of the animal, where it lives, and how it interacts with other animals. But it is equally important for those making decisions about the species to understand citizens’ knowledge and perceptions so managers can effectively communicate with the public and help the public participate in planning and decision making activities. Unfortunately, what is known about public knowledge, perception, and preferences concerning prairie dog management is limited to data from only a few areas. This study attempts to answer the question: What do people in the short-grass prairie region of the United States know and think about black-tailed prairie dogs? In the summer of 2000, we sent a survey by mail to citizens of rural, urban, and suburban counties in the short-grass prairie region of the United States. This area includes all or part of 11 states: Arizona, Colorado, Kansas, Montana, Nebraska, New Mexico, North Dakota, Oklahoma, South Dakota, Texas, and Wyoming (see Figure 1, p. 4). A total of 1933 citizens completed the survey for a 56% response rate (Table 1). This report provides a summary of the answers for all the questions in the survey. (Extra copies of this report can be downloaded from our website: http://www.mesc.usgs.gov/seias.) The results show that although people do not believe prairie dogs are a big environmental issue, they favor a balanced approach when dealing with such problems. When asked about their views on environmental policy, respondents reported being more conservative than liberal: 40% reported slightly conservative or conservative environmental views, 24% reported moderate environmental views, and 19% reported slightly liberal or liberal environmental views. Ninteen percent (19%) said they did not know or had not thought about their environmental values. When asked how important black-tailed prairie dogs are compared to other environmental problems, 69% said they are less important than other issues or not an issue at all. Thirty one percent (31%) said prairie dogs are about the same or more important than other issues.

Open-File Report↗

USGS2005

PCB concentrations in Pere Marquette River and Muskegon River watersheds, 2002

Polychlorinated biphenyl compounds (PCBs) are a class of209 individual compounds (known as congeners) for which there are no known natural sources. PCBs are carcinogenic and bioaccumulative compounds. For over 40 years, PCBs were manufactured in the United States. The flame resistant property of PCBs made them ideal chemicals for use as flame-retardants, and as coolants and lubricants in transformers and other electrical equipment. PCBs were also used in heating coils, carbonless paper, degreasers, varnishes, lacquers, waterproofing material, and cereal boxes. In addition, they were frequently used in the manufacturing of plastics, adhesives, and paints. During the manufacturing period of PCBs, these chemicals entered the environment though atmospheric release during manufacturing and burning of PCB products, leaks and spills, and improper disposal. Although PCB manufacturing was banned over 20 years ago, PCBs still enter the environment from hazardous waste sites, improper disposals of PCB-containing products, weathering of asphalt and other substances containing PCBs, burning of PCB containing products, leakage from old equipment, leaching from landfills, and release from contaminated sediments. PCBs do not readily break down in the environment, thus remain there for long periods of time. A small amount may remain dissolved in water but most adhere to organic particles and bottom sediments. In sufficient concentrations, PCBs affect human, wildlife, and aquatic health. PCBs accumulate in fatty tissues of animals and fish and are passed on to those that eat them. PCBs are animal teratogens and potentially carcinogenic. They can cause death of animals, fish, and birds; death or low growth rate of plants; shortened lifespan; reproductive problems; and lower fertility. Women who are exposed to high levels of PCBs may have babies with slightly lower birth weights and transfer the PCBs through the breast milk, which may affect the immune system and motor development of the child. Rule 323.1057 (Toxic Substances) of the Part 4. Water Quality Standards gives procedure for calculating water-quality values to protect human, wildlife and aquatic life. For total PCB, the applicable Rule 57 water-quality value is the human cancer value (HCV=0.26 ng/L), In 2002, U. S. Geological Survey (USGS) and Michigan Department of Environmental Quality (MDEQ) cooperatively planned and executed a monitoring program for PCBs in water and sediment from the Pere Marquette River and Muskegon River watersheds. The Pere Marquette and Muskegon River are in the west central part of Michigan's Lower Peninsula (fig. 1). The Pere Marquette River watershed is about 750 square miles, and the Muskegon River is about 2700 square miles. Both rivers are popular recreational waters, and the Pere Marquette River is a Michigan designated Natural River (Part 305 of the Natural Rivers and Environmental Protection Act 451 of 1994).

Michigan↗

USGS2004

VPV--The velocity profile viewer user manual

The Velocity Profile Viewer (VPV) is a tool for visualizing time series of velocity profiles developed by the U.S. Geological Survey (USGS). The USGS uses VPV to preview and present measured velocity data from acoustic Doppler current profilers and simulated velocity data from three-dimensional estuarine, river, and lake hydrodynamic models. The data can be viewed as an animated three-dimensional profile or as a stack of time-series graphs that each represents a location in the water column. The graphically displayed data are shown at each time step like frames of animation. The animation can play at several different speeds or can be suspended on one frame. The viewing angle and time can be manipulated using mouse interaction. A number of options control the appearance of the profile and the graphs. VPV cannot edit or save data, but it can create a Post-Script file showing the velocity profile in three dimensions. This user manual describes how to use each of these features. VPV is available and can be downloaded for free from the World Wide Web at http://ca.water.usgs.gov/program/sfbay/vpv.

Open-File Report↗

USGS2007

Fish movement ecology in high gradient headwater streams: Its relevance to fish passage restoration through stream culvert barriers

Restoration of fish passage through culvert barriers has emerged as a major issue in the Pacific Northwest and nationwide, in part, because of their potential influence on fish movement. Movement is an essential mechanism by which mobile animals acquire the resources necessary for the successful completion of their life-cycles. In this report, we provide a brief review of some essential characteristics of animal movement and examples from a focal group of fishes in Washington State: salmon, trout, and char. We begin by outlining some basic characteristics of animal movement and then apply that foundation to the case of salmonid fishes. Next we consider the consequences of disrupting fish movement with human-constructed barriers, such as culverts. Finally, this body of evidence is summarized, and we propose a short list of what we view as high priority information needs to support more effective restoration of fish passage through culverts.

Open-File Report↗

USGS2010

Distribution of the non-native gastropod Melanoides tuberculatus in Biscayne National Park, Florida

Introduction Melanoides tuberculatus (fig. 1), a gastropod that is not native to South Florida, was identified in Biscayne National Park (BNP) while researchers from the U.S. Geological Survey were conducting other studies around the Black Point canals in the summer of 2003. A study to determine the distribution, genetics, and salinity tolerance of this freshwater species began in 2004. For park managers and the recreational users of BNP, the presence of Melanoides tuberculatus is cause for concern because it is the intermediate host for several trematode parasites that affect humans and animals in multiple ways: Human health concerns include parasites (trematode worms) that affect the lung (Paragonimus westermani) and the liver ( Clonorchis sinensis , and Opisthorchis sp. ). Skin irritations and lesions can also be caused by trematodes that normally infect other species. Animal health concerns include parasites that affect the eyes of waterfowl ( Philophthalmus megalurus ), a trematode that burrows into the cartilage of fish and can lead to death ( Centrocestus formosanus ), and a trematode that infects the muscle tissue of fish and causes multiple abnormalities ( Haplorchis sp. ). When parasite-infected fish or crustaceans are eaten by birds or mammals, the next stage of the life cycle is in place (fig. 2). Native snail species concerns include the potential displacement of invertebrate species that make up the natural nearshore benthic communities in BNP. M. tuberculatus has very high reproductive rates, reproduces via parthenogenesis, and is live bearing, factors which increase the survivability of the offspring and increase competition for limited resources. These snails are considered to be freshwater animals in their native habitat of Southeast Asia. However, they have been collected in BNP in both estuarine and marine waters along the western margins of BNP and, as far as 1.7 kilometers (km) from shore at the Black Point canal inflow into Biscayne Bay (383 live per square meter (/m 2 ). In BNP, M. tuberculatus is a benthic inhabitant grazing on micro algal components at the sediment surface. A documented population with as many as 23,000/m 2 was observed at Snapper Creek, near Coral Gables, FL (Roessler and others, 1977), north of BNP.

Florida↗

USGS2016

Bivalve effects on the food web supporting delta smelt - A long-term study of bivalve recruitment, biomass, and grazing rate patterns with varying freshwater outflow

Executive Summary Phytoplankton is an important and limiting food source in the Sacramento-San Joaquin Delta (the Delta) and San Francisco Bay; the decline of phytoplankton biomass is one possible factor in the pelagic organism decline and specifically in the decline of the protected delta smelt. The bivalves Corbicula fluminea and Potamocorbula amurensis have been shown to control phytoplankton biomass in several locations throughout the system, and their distribution and population dynamics are therefore of great interest. We were able to describe the distribution and dynamics of bivalve biomass through use of samples collected by the California Department of Water Resources (DWR) as part of a monitoring program from 1977 to 2013. As one element of DWR’s and the Bureau of Reclamation’s Environmental Monitoring Program (EMP), the DWR benthic monitoring program examines the impact of water project operations on the estuary as prescribed by a series of Water Rights Decisions mandated by the State Water Resources Control Board (SWRCB). The availability of multidecade samples allowed us to examine long-term trends in biomass, recruitment, and size of bivalves at the 15 stations sampled. Biomass and grazing rate had the same basic trends, and the conclusions that we apply to biomass can be applied to grazing rate data. During winter of most years, Potamocorbula biomass was low at all locations and was near zero in the shallow San Pablo Bay station. The Potamocorbula biomass at shallow stations consistently peaked during summer and fall, but there was no consistent peak season in the deep stations. Corbicula had a much less consistent seasonal biomass pattern than Potamocorbula . However, some interannual patterns were consistent between stations. Corbicula biomass at three stations declined after 2003 (C9, D16, and D28). The Franks Tract (D19) Corbicula biomass had a baseline shift up (that is, all values were > 0) in 1985 until DWR ceased sampling at the station in 1995. Two other stations showed a similar increase in baseline but at different times; D24 shifted up after 2007 and D11 shifted up in 1991. Potamocorbula recruitment (any bivalve ≤ 2.5 millimeters [mm] in length) occurred anytime between spring and fall, with bivalves at the most downstream stations in San Pablo Bay recruiting in spring and animals at the most upstream stations recruiting in fall. The bivalves at the stations between these endpoints recruited in (1) spring or (2) summer and fall (Carquinez Strait), or in some combination of two of those three seasons in Grizzly Bay. The few locations where Potamocorbula and Corbicula overlapped showed recruitment abundance opposing each other, with Potamocorbula recruits peaking during the more saline time of year and Corbicula recruits peaking during periods of lower salinities. Corbicula recruits were present throughout most of the year with some peaks in abundance, but the patterns were not seasonally consistent at any station. Mean size peaked in both bivalves in late summer and early fall and never got above a certain size; maximum size depended on location. The mean size of both bivalves has decreased over the years, with the size distributions throughout the Delta now skewed toward smaller, younger Corbicula (< 10 mm). The mean size of Potamocorbula has also become skewed toward the small, younger bivalves, with sizes in the range of 2 – 8 mm. The mean size of Potamocorbula increased from spring to fall and decreased in winter. A similar generalization is not possible with Corbicula because seasonal patterns in size varied depending on station location. Station D24 on the Sacramento River was the only location with an increase in Corbicula mean size over the sampling period. The largest mean sized Potamocorbula were seen in the channel areas, where sizes of 15 mm were common at stations D41C, 8.1, and D6; sizes in excess of 15 mm were observed at all three D4 stations during the mid 1990s. The mean size of Potamocorbula in the shoals was ≈5 – 7 mm in most years in Grizzly Bay (D7) and San Pablo Bay (D41A), with an increase to > 10 mm at D7 in the wet years. The largest mean sized Corbicula were in the southern Delta (C9 ≈25 mm during 1996 – 97 and 2012 – 2013), and the smallest average sizes were in the San Joaquin River (P8 and D16). Corbicula at the upstream Sacramento River station (D24) and in the southern Delta (C9) showed similar interannual patterns in average size although the animals at C9 were consistently larger than those at D24 were. Corbicula in Franks Tract (D19) and the Old River (D28A) south of Franks Tract were also similar in size and in interannual patterns. At the few stations where Potamocorbula and Corbicula co-occur, it appears that they did not hinder each other’s growth. Both bivalves had large animals at D4, where Corbicula size increased coincident with the presence of Potamocorbula in 1987. Corbicula were observed in wet years prior to Potamocorbula’s invasion at D7 (Grizzly Bay) and were capable of growing to significant size in wet years (> 20 mm in 1986).

California↗

USGS2018

An initial comparison of pesticides and amphibian pathogens between natural and created wetlands in the New Jersey Pinelands, 2014–16

A study conducted by the U.S. Geological Survey, in cooperation with the New Jersey Pinelands Commission and Montclair State University, was designed to compare pesticide concentrations and the presence and prevalence of amphibian pathogens between natural ponds and two types of created wetlands, excavated ponds and stormwater basins, throughout the New Jersey Pinelands. The study described herein is part of a larger study by the New Jersey Pinelands Commission designed to compare the functional equivalency of natural and created wetlands throughout the New Jersey Pinelands. Sites were selected on the basis of land-use classifications within a 500-meter radius around each wetland from a pool of natural ponds, excavated ponds, and stormwater basins determined by the New Jersey Pinelands Commission. Water, bed-sediment, anuran-food, and composite larval-anuran-tissue samples were collected from four reference (minimum land-use effects) and four degraded (maximum land-use effects) sites from each wetland type for a total of 24 ponds or basins throughout the New Jersey Pinelands during 2014–16. Prevalence of Ranavirus was determined on the basis of tail clips collected from 60 individual larval anurans in each wetland, and 10 animals from each wetland also were swabbed for the presence of Batrachochytrium dendrobatidis (Bd). Other constituents measured included turbidity, pH, specific conductance, dissolved oxygen, dissolved organic carbon, percent organic carbon in sediment, and composite larval-anuran lipid content. The amount of altered land (percent agricultural plus percent developed) ranged from 0 to 62.4 percent for the natural ponds, 0 to 63.6 percent for the excavated ponds, and 23.3 to 80.2 percent for the stormwater basins. The herbicides atrazine and metolachlor were observed in 60 and 89 percent of the water samples, respectively. The insecticide bifenthrin was the most frequently detected current-use pesticide (greater than 25 percent of the samples) in bed-sediment, anuran-food, and composite larval-anuran-tissue samples. The legacy insecticide p,p' -DDT and its primary degradates p,p' -DDD and p,p' -DDE were the most frequently detected compounds in bed-sediment and anuran-food samples (32–76 percent in sediment samples and 24–72 percent in anuran-food samples). Significantly, greater numbers of pesticides and higher total pesticide concentrations were observed in stormwater basins than in natural and excavated ponds. Reference wetlands had fewer pesticides and lower total pesticide concentrations compared to degraded wetlands, indicating a positive relation between percent altered land and pesticides throughout the New Jersey Pinelands. Ranavirus was observed in larvae from 4 wetlands, including 1 reference natural pond, 1 degraded natural pond, and 2 degraded stormwater basins, with prevalence ranging from 3 to 43 percent. Bd was detected in swabs from 18 animals and in 4 natural ponds (1 reference and 3 degraded), 3 excavated ponds (all reference), and 2 stormwater basins (1 reference and 1 degraded); however, detection probability was low. In the wetlands with Bd detections, between 10 and 30 percent (between 1 and 3) of the animal’s swabbed tested positive for Bd. Owing to the limited number of positive detections for both Bd and Ranavirus , no statistical comparisons between wetland types and land-use classifications were possible.

New Jersey↗

USGS2019

Chronic wasting disease—Research by the U.S. Geological Survey and partners

Introduction Chronic wasting disease (CWD) is the only transmissible spongiform encephalopathy, a class of invariably fatal neurodegenerative mammalian diseases associated with a misfolded cellular prion protein found in wild free-ranging animals. Because it has a long incubation period, affected animals in Cervidae (the deer family; referred to as “cervids”) may not show signs of disease for several years. While signs are not specific to CWD, affected cervids (deer, elk, moose, and reindeer) show changes in appearance (such as progressive weight loss) and changes in behavior such as stumbling, tremors, and teeth grinding. CWD can be transmitted by direct contact or through a contaminated environment. The causative prion agent is highly resistant to degradation. In recent decades, CWD has transitioned from a novel, obscure prion disease of cervids with limited geographical distribution, to a disease that poses substantial ecological, agricultural, and economic risks across large regions of North America. Since its discovery in free-ranging elk and deer populations in the western United States in the 1980s, CWD has been reported in captive or free-ranging cervid populations in 26 States, 3 Canadian Provinces, the Republic of South Korea, Finland, Sweden, and Norway. In addition, the proportion of CWD-infected animals is increasing in many areas where the disease is already established. In some heavily affected areas, total cervid numbers have decreased over time due to CWD, which suggests that these cervid populations may not be sustainable in the long-term. The U.S. Geological Survey (USGS) conducts wildlife disease surveillance and research to support management of CWD-affected species and their habitats. The scientific information is relevant to governmental agencies that manage wildlife and their habitats including the U.S. Fish and Wildlife Service, the National Park Service, the U.S. Department of Agriculture, and other Federal, State, and Tribal agencies as well as conservation partners (non-governmental organizations, businesses, and private landowners). Each project description in this report (1–30) includes the non-USGS collaborators (Federal, State, Tribal agencies, universities) and a USGS point of contact (principal investigator). If there are USGS publications associated with the project, a publication list is provided at the end of each project description.

Alberta, California, Colorado, Idaho, Iowa, Kansas↗

USGS2020

Aquatic invasive species in the Chesapeake Bay drainage—Research-based needs and priorities of U.S. Geological Survey partners and collaborators

Executive Summary The U.S. Geological Survey (USGS) is revising the Chesapeake Bay-based science plan to align it with recent U.S. Department of Interior and USGS science priorities that include, as stated in the plan, providing “an integrated understanding of the factors affecting fish habitat, fish health, and landscape conditions” in Chesapeake Bay and its watershed. A report of partner agencies’ needs and priorities related to aquatic invasive species (AIS) science was identified as an informational gap; a report would help to further development of the science program related to aquatic animal health and habitat. This objective was addressed through review of pertinent documentation and conversations with representatives of State, Federal, and regional agencies with vested interests in AIS management in Chesapeake Bay and the Chesapeake Bay drainage area, and this document was produced to summarize the related findings. All agencies and organizations (13) reported that AIS are of general concern, with most stakeholder groups reporting AIS-related issues to be of high priority, including invasive fishes and invertebrates, invasive plants, and microbes including aquatic animal pathogens. Invasive fishes are of great concern to all partner agencies. Channa argus (northern snakehead) and Ictalurus furcatus (blue catfish) are high priority and represent the two most named AIS of concern for these agencies. Nine of 10 stakeholder groups listed northern snakehead as a high priority species, and 6 listed blue catfish as a high priority species as well. Pylodictis olivaris (flathead catfish), invasive crayfish species , and dressenid mussels were also prioritized by multiple partner groups, each receiving specific mention by at least 3 of the 10 stakeholder groups in discussions or documents. Invasive carp, such as Hypophthalmichthys molatrix (silver carp), also received mention by multiple agencies (3 of the 10 stakeholder groups) because these fish represent priority AIS in nearby watersheds and a threat for introduction and dissemination within the Chesapeake Bay watershed from these neighboring regions. Invasive plants are among priority species, and Hydrilla verticillata (hydrilla) topped the list. Hydrilla was reported as a priority species by 5 of the stakeholder groups queried. Trapa natans and T. bispinosa (water chestnut), Phragmites australis (common reed), and Lythrum salicaria (purple loosestrife) were also among the aquatic invasive plants that were prioritized by multiple partner agencies. Multiple stakeholder groups (5 of the 10 groups) also considered Didymosphenia geminata (didymo) and various aquatic animal pathogens among their priority AIS for management considerations. Science needs that were recurrently indicated by stakeholders to support management of invasive species include Technology to enhance biosurveillance capability, such as reliable environmental DNA based detection methodology; Risk assessment modeling to forewarn of and prioritize AIS-related threats; Increased information and intervention methods related to vectors and pathways of AIS introductions; Increased information about the biology and life history of AIS, including information related to trophic interactions, health and disease, and distribution and abundance; and Potential applications of mitigation strategies, including genetically based biocontrol mechanisms. Potential next steps to address the science needs include Development of biosurveillance and risk assessment tools for identification of AIS in proactive management; Development of proactive management techniques to prevent AIS introductions through recognized vectors and pathways; Development of interagency biosurveillance programs to best utilize personnel, funds, and other resources among interested agencies and organizations; Investigations to address life history, consequences, and movement/dissemination of top priority invasive species in the region; Investigations to determine the potential for novel mitigation technologies, such as the application of synthetic biological (genetic) control methods; and Investigations with focus on emerging and high priority AIS in the region, including fishes (blue catfish, flathead catfish, northern snakehead), invertebrates (invasive crayfish and mollusks) and plants (hydrilla, water chestnut, phragmites).

Virginia, Maryland, Delaware, West Virginia, Penns↗