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At least 73 records · Page 4Linked to original sources
USGS2018

Using genetic and phenotypic comparisons to evaluate apparent segregation among Kokanee spawning groups

Genetic and phenotypic traits of spatially and temporally segregated kokanee Oncorhynchus nerka spawning groups in Lake Pend Oreille, Idaho, were compared to test for evidence of divergence on the basis of ecotype (stream spawners versus shoreline spawners) and spawn timing and to describe morphological, life history, and reproductive variation within and among groups. Early and late spawning runs were found to be reproductively isolated; however, there was no clear evidence of genetic differentiation between ecotypes. Spawning groups within the same ecotype differed in length, age distribution, mean length at age, fecundity, and egg size. Variation in reproductive attributes was due primarily to differences in length distributions. Larger‐bodied shore‐spawning kokanee were located in areas where egg survival is known to be enhanced by downwelling, suggesting that the distribution of shore‐spawning kokanee may be partly structured by competition for spawning habitats with groundwater influence. This study contributes to other research indicating that introduced kokanee populations are unlikely to undergo adaptive divergence if they have a history of population fluctuations and are supplemented regularly.

Idaho↗
USGS2018

Juvenile Chinook Salmon mortality in a Snake River Reservoir: Smallmouth Bass predation revisited

Predation by nonnative fishes has been identified as a contributing factor in the decline of juvenile salmonids in the Columbia River basin. We examined the diet composition of Smallmouth Bass Micropterus dolomieu and estimated the consumption and predation loss of juvenile Chinook Salmon Oncorhynchus tshawytscha in Lower Granite Reservoir on the Snake River. We examined 4,852 Smallmouth Bass stomachs collected from shoreline habitats during April–September 2013–2015. Chinook Salmon were the second most commonly consumed fish by all size‐classes of Smallmouth Bass (≥150 mm TL) throughout the study. Over the 3 years studied, we estimated that a total of 300,373 Chinook Salmon were consumed by Smallmouth Bass in our 22‐km study area, of which 97% (291,884) were subyearlings (age 0) based on length frequency data. A majority of the loss (61%) occurred during June, which coincided with the timing of hatchery releases of subyearling fall Chinook Salmon. Compared to an earlier study, mean annual predation loss increased more than 15‐fold from 2,670 Chinook Salmon during 1996–1997 to 41,145 Chinook Salmon during 2013–2015 (in reaches that could be compared), despite lower contemporary Smallmouth Bass abundances. This increase can be explained in part by increases in Smallmouth Bass consumption rates, which paralleled increases in subyearling Chinook Salmon densities—an expected functional response by an opportunistic consumer. Smallmouth Bass are currently significant predators of subyearling Chinook Salmon in Lower Granite Reservoir and could potentially be a large source of unexplained mortality.

Idaho, Washington↗
USGS2018

Quantifying seining detection probability for fishes of Great Plains sand‐bed rivers

Species detection error (i.e., imperfect and variable detection probability) is an essential consideration when investigators map distributions and interpret habitat associations. When fish detection error that is due to highly variable instream environments needs to be addressed, sand‐bed streams of the Great Plains represent a unique challenge. We quantified seining detection probability for diminutive Great Plains fishes across a range of sampling conditions in two sand‐bed rivers in Oklahoma. Imperfect detection resulted in underestimates of species occurrence using naïve estimates, particularly for less common fishes. Seining detection probability also varied among fishes and across sampling conditions. We observed a quadratic relationship between water depth and detection probability, in which the exact nature of the relationship was species‐specific and dependent on water clarity. Similarly, the direction of the relationship between water clarity and detection probability was species‐specific and dependent on differences in water depth. The relationship between water temperature and detection probability was also species dependent, where both the magnitude and direction of the relationship varied among fishes. We showed how ignoring detection error confounded an underlying relationship between species occurrence and water depth. Despite imperfect and heterogeneous detection, our results support that determining species absence can be accomplished with two to six spatially replicated seine hauls per 200‐m reach under average sampling conditions; however, required effort would be higher under certain conditions. Detection probability was low for the Arkansas River Shiner Notropis girardi , which is federally listed as threatened, and more than 10 seine hauls per 200‐m reach would be required to assess presence across sampling conditions. Our model allows scientists to estimate sampling effort to confidently assess species occurrence, which maximizes the use of available resources. Increased implementation of approaches that consider detection error promote ecological advancements and conservation and management decisions that are better informed.

Oklahoma↗
USGS2018

Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound

In marine ecosystems, survival can be heavily influenced by size‐selective mortality during juvenile life stages. Understanding how and when size‐selective mortality operates on a population can reveal underlying growth dynamics and size‐selective ecological processes affecting the population and thus can be used to guide conservation efforts. For subyearling Chinook Salmon Oncorhynchus tshawytscha in Puget Sound, previous research reported a strong positive relationship between marine survival and body mass during midsummer in epipelagic habitats within Puget Sound, suggesting that early marine growth drives survival. However, a fine‐scale analysis of size‐selective mortality is needed to identify specific critical growth periods and habitats. The objectives of this study were to (1) describe occupancy patterns across estuarine delta, nearshore marine, and offshore epipelagic habitats in Puget Sound; (2) describe changes in FL and weight observed across habitats and time; (3) evaluate evidence for size‐selective mortality; and (4) illustrate how marine survival of the stocks studied may be affected by variation in July weight. In 2014 and 2015, we sampled FLs, weights, and scales from seven hatchery‐origin and two natural‐origin stocks of subyearling Chinook Salmon captured every 2 weeks during out‐migration and rearing in estuary, nearshore, and offshore habitats within Puget Sound. Natural‐origin stocks had more protracted habitat occupancy patterns than hatchery‐origin stocks and were smaller than hatchery‐origin stocks in both years. Regardless of origin, subyearlings were longer and heavier and grew faster in offshore habitats compared to estuary and nearshore habitats. For all stocks, we found little evidence of size‐selective mortality among habitats in Puget Sound. These patterns were consistent in both years. Finally, the weights of subyearlings sampled during July in the offshore habitat predicted Puget Sound‐wide marine survival rates of 0.4% for 2014 and 2.0% for 2015, with stock‐specific predictions ranging from 0.18% to 11.70%.

Washington↗
USGS2018

Migratory behavior and physiological development as potential determinants of life history diversity in fall Chinook Salmon in the Clearwater River

We studied the influence of behavior, water velocity, and physiological development on the downstream movement of subyearling fall‐run Chinook Salmon Oncorhynchus tshawytscha in both free‐flowing and impounded reaches of the Clearwater and Snake rivers as potential mechanisms that might explain life history diversity in this stock. Movement rates and the percentage of radio‐tagged fish that moved faster than the average current velocity were higher in the free‐flowing Clearwater River than in impounded reaches. This supports the notion that water velocity is a primary determinant of downstream movement regardless of a fish's physiological development. In contrast, movement rates slowed and detections became fewer in impounded reaches, where water velocities were much lower. The percentage of fish that moved faster than the average current velocity continued to decline and reached zero in the lowermost reach of Lower Granite Reservoir, suggesting that the behavioral disposition to move downstream was low. These findings contrast with those of a similar, previous study of Snake River subyearlings despite similarity in hydrodynamic conditions between the two studies. Physiological differences between Snake and Clearwater River migrants shed light on this disparity. Subyearlings from the Clearwater River were parr‐like in their development and never showed the increase in gill Na + /K + ‐ATPase activity displayed by smolts from the Snake River. Results from this study provide evidence that behavioral and life history differences between Snake and Clearwater River subyearlings may have a physiological basis that is modified by environmental conditions.

Idaho, Washington↗
USGS2018

Characterization of Sea Lamprey stream entry using dual‐frequency identification sonar

Effective methods to control invasive Sea Lampreys Petromyzon marinus in the Laurentian Great Lakes often rely on knowledge of the timing of the Sea Lamprey spawning migration, which has previously been characterized using data gathered from traps. Most assessment traps are located many kilometers upstream from the river mouth, so less is known about when Sea Lampreys enter spawning streams and which environmental cues trigger their transition from lakes to rivers. To decide how to develop barriers and traps that target Sea Lampreys when they enter a stream, the stream entry of Sea Lampreys into a Lake Huron tributary during 2 years was assessed using dual‐frequency identification sonar (DIDSON). Sea Lampreys entered the stream in low densities when temperatures first reached 4°C, which was up to 6 weeks and a mean of 4 weeks earlier than when they were first captured in traps located upstream. The probability of stream entry was significantly affected by stream temperature and discharge, and stream entry timing peaked when stream temperatures rose to 12°C and discharge was high. Examination of the entry at a finer temporal resolution (i.e., minutes) indicated that Sea Lampreys did not exhibit social behavior (e.g., shoaling) during stream entry. Our findings indicate that Sea Lampreys may be vulnerable to alternative trap types near river mouths and hydraulic challenges associated with traditional traps. Also, seasonal migration barriers near stream mouths may need to be installed soon after ice‐out to effectively block the entire adult Sea Lamprey cohort from upstream spawning habitat.

Michigan↗
USGS2018

Dam Removal and Fish Passage Improvement Influence Fish Assemblages in the Penobscot River, Maine

Dams and their impoundments disrupt river habitat connectivity to the detriment of migratory fishes. Removal of dams improves riverine connectivity and lotic habitat, which benefits not only these fishes but also resident fluvial specialist species. Restoration efforts on the Penobscot River, Maine, are among the largest recently completed in the United States and include the removal of the two lowermost dams and improvements to fish passage at several remaining barriers. We assessed fish assemblages in the main‐stem river and several major tributaries before (2010–2012) and after (2014–2016) dam removal using boat electrofishing surveys and a stratified random sampling design. In total, we sampled 303 km of shoreline and captured 107,335 individual fish representing 39 species. Similarity indices and rarefaction curves indicated that significant changes in fish assemblage composition occurred in reaches that underwent both habitat and connectivity changes (i.e., directly above removed dams). The newly connected reaches became more similar in fish assemblage composition, as demonstrated by an average increase of 31% in similarity scores. The changes in similarity score in these reaches were driven by increasing access for anadromous fishes and decreasing abundances of slow‐water specialist species. For example, we observed a marked reduction in lacustrine species in former impoundments. These assemblage shifts were further illustrated by nonmetric multidimensional scaling in which sites directly above former dams exhibited the largest ordinal shifts immediately following dam removal. We also found all anadromous species in greatest abundance below the lowermost dam during each respective sampling period, though we did find some anadromous species above the lowermost dam during postremoval sampling. Our results demonstrate the potential for large dam removal projects to restore both fluvial and anadromous fish assemblages.

Maine↗
USGS2018

Spatial variability and macro‐scale drivers of growth for native and introduced Flathead Catfish populations

Quantifying spatial variability in fish growth and identifying large‐scale drivers of growth are fundamental to many conservation and management decisions. Although fish growth studies often focus on a single population, it is becoming increasingly clear that large‐scale studies are likely needed for addressing transboundary management needs. This is particularly true for species with high recreational value and for those with negative ecological consequences when introduced outside of their native range, such as the Flathead Catfish Pylodictis olivaris . This study quantified growth variability of the Flathead Catfish across a large portion of its contemporary range to determine whether growth differences existed between habitat types (i.e., reservoirs and rivers) and between native and introduced populations. Additionally, we investigated whether growth parameters varied as a function of latitude and time since introduction (for introduced populations). Length‐at‐age data from 26 populations across 11 states in the USA were modeled using a Bayesian hierarchical von Bertalanffy growth model. Population‐specific growth trajectories revealed large variation in Flathead Catfish growth and relatively high uncertainty in growth parameters for some populations. Relatively high uncertainty was also evident when comparing populations and when quantifying large‐scale patterns. Growth parameters (Brody growth coefficient [ K ] and theoretical maximum average length [ L ∞ ]) were not different (based on overlapping 90% credible intervals) between habitat types or between native and introduced populations. For populations within the introduced range of Flathead Catfish, latitude was negatively correlated with K . For native populations, we estimated an 85% probability that L ∞ estimates were negatively correlated with latitude. Contrary to predictions, time since introduction was not correlated with growth parameters in introduced populations of Flathead Catfish. Results of this study suggest that Flathead Catfish growth patterns are likely shaped more strongly by finer‐scale processes (e.g., exploitation or prey abundances) as opposed to macro‐scale drivers.

Transactions of the American Fisheries Society↗
USGS2018

Combining genetic, isotopic, and field data to better describe the influence of dams and diversions on Burbot Movement in the Wind River Drainage, Wyoming

Dams and water diversions fragment habitat, entrain fish, and alter fish movement. Many Burbot Lota lota populations are declining, with dams and water diversions thought to be a major threat. We used multiple methods to identify Burbot movement patterns and assess entrainment into an irrigation system in the Wind River, Wyoming. We assessed seasonal movement of Burbot with a mark–recapture (PIT tagging) study, natal origins of entrained fish with otolith microchemistry, and historic movement with genotyping by sequencing. We found limited evidence of entrainment in irrigation waters across all approaches. The mark–recapture study indicated that out‐migration from potential source populations could be influenced by flow regime but was generally low. Otolith and genomic results suggested the presence of a self‐sustaining population within the irrigation network. We conclude that emigration from natural tributary populations is not the current source of the majority of Burbot found in irrigation waters. Instead, reservoir and irrigation canal construction has created novel habitat in which Burbot have established a population. Using a multi‐scale approach increased our inferential abilities and mechanistic understanding of movement patterns between natural and managed systems.

Wyoming↗
USGS2018

Key morphological features favor the success of nonnative fish species under reduced turbidity conditions in the lower Colorado River Basin

As a result of anthropomorphic alterations to the lower Colorado River basin and other southwestern rivers, water turbidity has been greatly reduced and introduced, nonnative fishes thrive in these waterways. To quantify key morphological features that may allow nonnative fishes to displace native fishes, we compared eye diameter (a proxy for visual acuity) and maximum anatomical gape (a proxy for maximum prey size) in native and nonnative fishes of the lower Colorado River basin. In general, nonnative fishes have larger eyes and larger gapes relative to native fishes. Native invertivorous and piscivorous fishes may be at a particular disadvantage when compared with nonnative species from the same trophic guild because native midwater predators have proportionally smaller eyes and mouths. In the historically turbid conditions of the Colorado River, native fish likely had a limited ability to use vision to locate prey and avoid predators. Similarly, native fishes could not identify potential food items from a distance in turbid waters so suction‐based prey capture (where the predator is in close proximity to the prey) may have been favored over ram‐based prey capture (where fish swim from a distance to overtake prey). Many nonnative fish species have a large eye diameter and maximum anatomical gape; these features likely facilitate their ability to visually identify and capture large, elusive prey. These results suggest that the large eyes and large gapes of nonnative fishes make them superior predators and competitors in the clear, anthropomorphically altered southwestern rivers of the USA.

Lower Colorado River Basin↗
USGS2018

Piscivore diet shifts and trophic level change after Alewife establishment in Lake Champlain

Invasions and deliberate introductions of new prey species are likely to affect prey choice and trophic level of resident predators. Rainbow Smelt ( Osmerus mordax ) and Alewife ( Alosa pseudoharengus ) are common prey fish species in lakes throughout North America either as native or non‐native species. The establishment of Alewife in the 2000s in a lake with a native Rainbow Smelt population (Lake Champlain) presented an opportunity to study changes in the diet and trophic level of fish already established in the system. Using stable isotope analysis, we found that Alewife became a major component of predator diets, in particular of the diets of Atlantic Salmon ( Salmo salar ) and Walleye ( Sander vitreus ). Lake Trout ( Salvelinus namaycush ) consumed relatively few Alewives. For Walleye (the predator with both pre‐ and post‐Alewife isotope ratios available), the δ 15 N values decreased significantly from the pre‐Alewife period of the late 1990s, indicating that Walleye feed at lower trophic levels when Alewife are present. Predation on Alewife was correlated with the amount of spatial overlap of predators and prey. Our results show that the introduction of Alewife has altered the predator‐prey linkages in Lake Champlain; alterations that can have major effects on food web structure and trophic cascades.

Transactions of the American Fisheries Society↗
USGS2018

Integrated diet analyses reveal contrasting trophic niches for wild and hatchery juvenile Chinook Salmon in a large river delta

Hatchery programs have been used as a conservation tool to bolster declining populations of Chinook Salmon Oncorhynchus tshawytscha along much of the North American Pacific coast. In many watersheds, hatchery stocks are released concurrently with the wild population, thus raising the potential for density‐dependent effects. Competition for prey resources during the critical period for early marine growth and survival may diminish the foraging capacity and growth potential of wild Chinook Salmon, highlighting the importance of a diverse and productive delta habitat mosaic. We used an integrated diet approach with stomach content and stable isotope analyses to evaluate contrasting patterns of habitat use and prey consumption in a fall‐run population of juvenile Chinook Salmon from the Nisqually River delta in Puget Sound, Washington. We examined size‐class and origin‐level differences throughout a gradient of delta habitat types. Wild (unmarked) and hatchery juveniles exhibited distinct habitat use patterns whereby unmarked fish were captured more frequently in tidally influenced freshwater and mesohaline emergent marsh areas, while hatchery fish were caught more often in the nearshore intertidal zone. Consequently, hatchery fish were less likely to consume the energy‐dense terrestrial insects that were more common in freshwater and brackish marshes. Stable isotope signatures from muscle and liver tissues corroborated this finding, showing that unmarked juveniles had derived 24–31% of their diets from terrestrially sourced prey, while terrestrial insects only made up 2–8% of hatchery fish diets. This may explain why unmarked fish were in better condition than hatchery fish and had stomach contents that were 15% more energy‐rich than those of hatchery fish. We did not observe strong evidence for trophic overlap in juvenile Chinook Salmon of different rearing origins, but our results suggest that hatchery juveniles could be more sensitive to diet‐mediated effects on growth and survival.

Washington↗
USGS2018

Effects of climate-related stream factors on patterns of individual summer growth of Cutthroat Trout

Coldwater fishes are sensitive to abiotic and biotic stream factors, which can be influenced by climate. Distributions of inland salmonids in North America have declined significantly, with many of the current strongholds located in small headwater systems that may serve as important refugia as climate change progresses. We investigated the effects of discharge, stream temperature, trout biomass, and food availability on summer growth of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri , a species of concern with significant ecological value. Individual size, stream discharge, sample section biomass, and temperature were all associated with growth, but had differing effects on energy allocation. Stream discharge had a positive relationship with growth rates in length and mass; greater rates of prey delivery at higher discharges probably enabled trout to accumulate reserve tissues in addition to structural growth. Temperature effects were positive but not significant, and support in growth models was limited, likely due to the cold thermal regimes of the study area. The strength of the discharge effect on growth suggests that climate adaptation strategies for coldwater fishes that focus solely on thermal characteristics may be misleading and highlights the importance of considering multiple factors, including hydrologic regimes, in conservation planning.

Montana, Wyoming↗
USGS2018

Posthatch development of otoliths and daily ring genesis in age-0 Spotted Gars

Gars (Lepisosteidae) are increasingly being managed as top-level predators that are important to overall ecosystem health. Given the paucity of information on early life history for many species, additional early life history data would aid in gar conservation and management. Daily rings in otoliths are useful for determining many early life history parameters, such as growth rates and the date of hatch, but properly interpreting these structures requires additional information on otolith formation. Gars represent an ancient lineage, and their otoliths are unlike those of most teleost fishes, having multiple nuclei and being covered on the surface with very small otoconia. We used computed tomography X-ray scanning and oxytetracycline (OTC) marking of a series of known-age fish from hatch through 10–12 d posthatch (dph) to understand the formation of otoliths in the Spotted Gar Lepisosteus oculatus , a species that is of management concern in several parts of its range in North America. The sagittae and lapilli each began as loose associations of otoconia at hatch; they fused and hardened into single crystals by 4 dph, in concert with the transition from attached larvae to free-swimming juveniles. Asteriscus otoliths were not observed in any of the individuals examined through 12 dph. The OTC marks were not observed on individuals treated at hatch, and variable marks were detected at 1–5 dph. By 6 dph, 100% of individuals exhibited OTC marks on sagittae and lapilli. Daily rings could not be discerned until fish were marked at 4 dph, after which daily age estimates increased linearly with fish age. Results of this study verify that in Spotted Gars, otoliths (sagittae and lapilli) and their daily rings form several days after hatch, in relation to the transition from sessile, attached larvae to free-swimming juveniles.

Oklahoma↗
USGS2018

An interferometric synthetic aperture radar (InSAR) habitat suitability model to identify overwinter conditions for coregonine whitefishes in Arctic lagoons

Lagoons provide critical habitats for many fishes, including coregonine whitefishes, which are a mainstay in many subsistence fisheries of rural communities in Arctic Alaska. Despite their importance, little is known about the overwintering habits of whitefishes in Arctic Alaska due to the challenges associated with sampling during winter. We developed a habitat suitability (HS) model to understand the potential range of physical conditions that whitefishes experience during the Arctic winter, using three indicator lagoons that represent a range of environmental characteristics. The HS model was built using a three-step approach. First, remote sensing that uses interferometric synthetic aperture radar (InSAR) identified areas of floating and bottomfast ice. Second, through in-field ground-truthing, we confirmed the presence and quality of liquid water (water depth, temperature, and dissolved oxygen) beneath the ice cover. Third, we assessed the suitability of that liquid water as habitat for whitefishes based on published literature and expert interpretation of water quality parameters. InSAR determined that 0, 65.4, and 88.2% of the three lagoons were composed of floating ice corresponding with areas of liquid water beneath a layer of ice. The HS model indicated that all three lagoons had reduced suitability as whitefish habitat in winter than in summer due to the loss of habitat because of the presence of bottomfast ice and a reduction in the quality of liquid water due to cold temperatures, high salinities, and low dissolved oxygen levels. However, only the shallowest lagoon had lethal conditions and zero suitability as whitefish habitat. The methods outlined here provide a simple, cost-effective method to identify habitats that consistently provide critical winter habitat and integrate remote sensing in a HS model framework.

Alaska↗
USGS2018

Behavior and survival of stocked trout in southern Appalachian Mountain streams

Stocking of trout to support recreational fisheries is a common practice among state and federal agencies to meet angling and harvest demands. Success of stocking efforts relies upon fish behavior and survival to maximize the availability of fish to anglers. We quantitatively described the movement behavior and survival of stocked Brook Trout Salvelinus fontinalis , Brown Trout Salmo trutta , and Rainbow Trout Oncorhynchus mykiss in three southern Appalachian Mountain streams in western North Carolina, USA, that were managed under delayed harvest regulations. Hatchery trout were tagged with a combination of PIT tags and radio transmitters (radio tags); stocked into “Delayed Harvest Trout Waters” of the North Toe, East Prong Roaring, and Little rivers; and monitored during the catch-and-release season from October to June. Assessed according to river and species, 19–65% of trout emigrated from the delayed harvest study reaches, while 1–29% died within the reaches. The majority of radio-tagged fish (71%; 59–85% by river) remained within 2 km of the stocking location, whereas 6% migrated over 10 km from the stocking location. Few trout stocked during fall (October and November) were available to anglers the following June due to a combination of migration and mortality. Emigration from delayed harvest study reaches was associated with stocking and high-flow events. Multi-state modeling detailed these observations with weekly estimates of migration and survival rates. River-specific differences in emigration and mortality suggested that emigration was a greater source of trout loss than mortality in all rivers; no pattern related to river size was apparent in emigration, but mortality was greater in small streams. Brook Trout mortality rates were highest among the three species, and large fish of most species showed higher emigration and mortality than catchable-sized trout. Fisheries managers can apply our results to alter stocking regimes so as to enhance the efficiency of stocking and the acclimation of stocked trout to instream environments.

North Carolina↗
USGS2018

Acoustic telemetry and benthic habitat mapping inform the spatial ecology of Shortnose Sturgeon in the Hudson River, New York, USA

A history of overexploitation and industrialization of riverine habitats has impacted the Shortnose Sturgeon Acipenser brevirostrum , leading this species to become one of the earliest listed under the U.S. Endangered Species Act. The present understanding of Shortnose Sturgeon spatial ecology is based on observations from a limited number of Atlantic coastal rivers. To better understand Shortnose Sturgeon in the Hudson River, New York, we used acoustic telemetry to characterize seasonal habitat use and to identify regions of the river where seasonal sturgeon activity occurred. From 2012 to 2016, 101 adult fish were tagged and tracked, and sturgeon detections per unit effort (a metric of fish observation standardized by search effort) were evaluated against benthic habitat variables by using generalized additive regression models. Models indicated strong habitat associations in the spring season defined by gravel-dominated substrates and specific depth ranges, presumably associated with spawning activity. During summer, Shortnose Sturgeon were more dispersed, associating with muddy habitats, whereas in fall/winter, sturgeon congregated in specific regions of the river. These data demonstrate that river use and habitat associations vary seasonally and identify important areas for managing overlap between seasonal habitat use by Shortnose Sturgeon and human activity on the river.

New York↗
USGS2018

Neutral genetic and phenotypic variation within and among isolated headwater Brook Trout populations

Isolated populations are challenging to manage and conserve as they are particularly vulnerable to genetic drift, allelic fixation, inbreeding, and may express markedly reduced phenotypic variability. We sought to improve our understanding of how spatial isolation, occupancy range, and restricted gene flow influence contemporary phenotypic variation within and among native populations of Brook Trout Salvelinus fontinalis by examining the neutral genetic and phenotypic characteristics of 35 isolated headwater populations from Great Smoky Mountains National Park. Across a suite of 13 neutral microsatellite loci, we observed high levels of allelic fixation and considerable genetic differentiation among populations, subwatersheds, and watersheds that were consistent with patterns of isolation. We observed significant, positive correlations between allelic diversity and estimates of effective population sizes. In contrast, we observed considerably less phenotypic structure among streams, subwatersheds, and watersheds. Much of the phenotypic variation observed occurred among individuals within populations. Pairwise Mann‐Whitney tests revealed no significant phenotypic differences among the populations of Brook Trout we examined. Similarly, we observed no significant relationship between the amount of phenotypic variation within populations and any of the examined measures of genetic diversity or the amount of occupied habitat sampled, which suggests that unmeasured variables may be influencing morphometric and meristic variation within isolated populations. The observed patterns of isolation, genetic drift, and allelic fixation highlight the importance of enhancing population connectivity, but also suggest considerable phenotypic variability may persist within small, fragmented populations. Our results elucidate some challenges associated with managing and conserving isolated populations of Brook Trout, and reinforce the importance of conducting genetic studies on fragmented populations to inform management decisions.

Transactions of the American Fisheries Society↗