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At least 73 records · Page 4Linked to original sources
USGS2015

Assessment of general health of fishes collected at selected sites in the Great Lakes Basin In 2012

During the past decade, there has been a substantive increase in the detection of “emerging contaminants”, defined as a new substance, chemical, or metabolite in the environment; or a legacy substance with a newly expanded distribution, altered release, or a newly recognized effect (such as endocrine disruption). Emerging contaminants include substances such as biogenic hormones (human and animal), brominated flame retardants, pharmaceuticals, personal care products, plasticizers, current use pesticides, detergents, and nanoparticles. These contaminants are frequently not regulated or inadequately regulated by state or Federal water quality programs. Information about the toxicity of these substances to fish and wildlife resources is generally limited, compared to more highly regulated contaminants, and some classes have been shown to cause affects (for example feminization of male fish, immunomodulation) that are not evaluated via traditional toxicity testing protocols. As a result, these compounds may pose a substantial, but currently poorly documented threat to aquatic ecosystems. Failure to identify and understand the impacts of these emerging contaminants on fish and wildlife resources may result in deleterious impacts to Great Lakes resources that can result in adverse ecological, economic and recreational consequences. The U. S. Fish and Wildlife Service received funding through the Great Lakes Restoration Initiative (GLRI) for an Early Warning Program to detect and identify emerging contaminants and to evaluate the effects of these contaminants on fish and wildlife. The U.S. Geological Survey (WV Cooperative Fish and Wildlife Research Unit and National Fish Health Research Laboratory, Leetown Science Center) developed and implemented a biological effects monitoring protocol to assist in this program. Fish collections and measurements of biomarkers of exposure in Fall 2010 and Spring 2011 occurred at individual sites within select Areas of Concern (AOCs). They provided an assessment of the utility of the suite of biomarkers and also identified sites for more in-depth analyses. Selected areas are characterized as areas with known emerging contaminants, sensitive or listed species, areas downstream from municipal wastewater discharges or receiving waters for industrial facilities, and/or areas susceptible to agricultural or urban contamination, or harbors or ports. The results of the 2010- 2011 studies were summarized in Blazer et al. 2014 a, b, c; Braham et al. in review and Blazer et al. in review.

Great Lakes↗
USGS2020

Reservoir fish habitats: A perspective on coping with climate change

Climate change is the defining environmental problem for our generation. The effects of climate change are increasingly evident and are anticipated to profoundly affect our ability to conserve fish habitats and fish assemblages. Reservoirs are important structures for coping with projected shifts in water supply, but they also provide refuge for riverine fishes and retain distinct fish assemblages that support diverse fisheries. The effects of climate change on reservoirs are unique among aquatic systems because reservoirs have distinctive habitat characteristics due to their terrestrial origin and strong linkage to catchments. This article reviews (1) the projected effects of rising temperature and shifting precipitation on reservoir fish habitats, and (2) adaptation strategies to cope with the anticipated effects. Climate warming impacts to reservoirs may include higher water temperatures and shifts in hydrology that can result in reduced water levels in summer and fall, altered water residence cycles, disconnection from upstream riverine habitats and backwaters, increased stratification, eutrophication, anoxia, and a general shift in biotic assemblages including plants, invertebrates, and fishes. What is needed to adapt to these changes is a perspective that focuses on maintaining ecosystem functionality rather than on retaining a certain species composition. To that end, various strategies organized into planning, monitoring, and managing compartments are identified.

Reviews in Fisheries Science & Aquaculture↗
USGS2023

Ammonia and aquatic ecosystems – A review of global sources, biogeochemical cycling, and effects on fish

The purpose of this review is to better understand the full life cycle and influence of ammonia from an aquatic biology perspective. While ammonia has toxic properties in water and air, it also plays a central role in the biogeochemical nitrogen (N) cycle and regulates mechanisms of normal and abnormal fish physiology. Additionally, as the second most synthesized chemical on Earth, ammonia contributes economic value to many sectors, particularly fertilizers, energy storage, explosives, refrigerants, and plastics. But, with so many uses, industrial N 2 -fixation effectively doubles natural reactive N concentrations in the environment. The consequence is global, with excess fixed nitrogen driving degradation of soils, water, and air; intensifying eutrophication, biodiversity loss, and climate change; and creating health risks for humans, wildlife, and fisheries. Thus, the need for ammonia research in aquatic systems is growing. In response, we prepared this review to better understand the complexities and connectedness of environmental ammonia. Even the term “ammonia” has multiple meanings. So, we have clarified the nomenclature, identified units of measurement, and summarized methods to measure ammonia in water. We then discuss ammonia in the context of the N-cycle, review its role in fish physiology and mechanisms of toxicity, and integrate the effects of human N-fixation, which continuously expands ammonia's sources and uses. Ammonia is being developed as a carbon-free energy carrier with potential to increase reactive nitrogen in the environment. With this in mind, we review the global impacts of excess reactive nitrogen and consider the current monitoring and regulatory frameworks for ammonia. The presented synthesis illustrates the complex and interactive dynamics of ammonia as a plant nutrient, energy molecule, feedstock, waste product, contaminant, N-cycle participant, regulator of animal physiology, toxicant, and agent of environmental change. Few molecules are as influential as ammonia in the management and resilience of Earth's resources.

Science of the Total Environment↗
USGS2010

A late-Middle Pleistocene (Marine Isotope Stage 6) vegetated surface buried by Old Crow tephra at the Palisades, interior Alaska

A 40??cm thick primary bed of Old Crow tephra (131??????11??ka), an important stratigraphic marker in eastern Beringia, directly overlies a vegetated surface at Palisades West, on the Yukon River in central Alaska. Analyses of insect, bryophyte, and vascular plant macrofossils from the buried surface and underlying organic-rich silt suggest the local presence of an aquatic environment and mesic shrub-tundra at the time of tephra deposition. Autochthonous plant and insect macrofossils from peat directly overlying Old Crow tephra suggest similar aquatic habitats and hydric to mesic tundra environments, though pollen counts indicate a substantial herbaceous component to the regional tundra vegetation. Trace amounts of arboreal pollen in sediments associated with the tephra probably reflect reworking from older deposits, rather than the local presence of trees. The revised glass fission-track age for Old Crow tephra places its deposition closer to the time of the last interglaciation than earlier age determinations, but stratigraphy and paleoecology of sites with Old Crow tephra indicate a late Marine Isotope Stage 6 age. Regional permafrost degradation and associated thaw slumping are responsible for the close stratigraphic and paleoecological relations between Old Crow tephra and last interglacial deposits at some sites in eastern Beringia. ?? 2009 Elsevier Ltd.

Quaternary Science Reviews↗
USGS2014

Ecological risks of shale oil and gas development to wildlife, aquatic resources and their habitats

Technological advances in hydraulic fracturing and horizontal drilling have led to the exploration and exploitation of shale oil and gas both nationally and internationally. Extensive development of shale resources has occurred within the United States over the past decade, yet full build out is not expected to occur for years. Moreover, countries across the globe have large shale resources and are beginning to explore extraction of these resources. Extraction of shale resources is a multistep process that includes site identification, well pad and infrastructure development, well drilling, high-volume hydraulic fracturing and production; each with its own propensity to affect associated ecosystems. Some potential effects, for example from well pad, road and pipeline development, will likely be similar to other anthropogenic activities like conventional gas drilling, land clearing, exurban and agricultural development and surface mining (e.g., habitat fragmentation and sedimentation). Therefore, we can use the large body of literature available on the ecological effects of these activities to estimate potential effects from shale development on nearby ecosystems. However, other effects, such as accidental release of wastewaters, are novel to the shale gas extraction process making it harder to predict potential outcomes. Here, we review current knowledge of the effects of high-volume hydraulic fracturing coupled with horizontal drilling on terrestrial and aquatic ecosystems in the contiguous United States, an area that includes 20 shale plays many of which have experienced extensive development over the past decade. We conclude that species and habitats most at risk are ones where there is an extensive overlap between a species range or habitat type and one of the shale plays (leading to high vulnerability) coupled with intrinsic characteristics such as limited range, small population size, specialized habitat requirements, and high sensitivity to disturbance. Examples include core forest habitat and forest specialists, sagebrush habitat and specialists, vernal pond inhabitants and stream biota. We suggest five general areas of research and monitoring that could aid in development of effective guidelines and policies to minimize negative impacts and protect vulnerable species and ecosystems: (1) spatial analyses, (2) species-based modeling, (3) vulnerability assessments, (4) ecoregional assessments, and (5) threshold and toxicity evaluations.

Environmental Science & Technology↗
USGS2001

Pollen assemblages as paleoenvironmental proxies in the Florida Everglades

Analysis of 170 pollen assemblages from surface samples in eight vegetation types in the Florida Everglades indicates that these wetland sub-environments are distinguishable from the pollen record and that they are useful proxies for hydrologic and edaphic parameters. Vegetation types sampled include sawgrass marshes, cattail marshes, sloughs with floating aquatics, wet prairies, brackish marshes, tree islands, cypress swamps, and mangrove forests. The distribution of these vegetation types is controlled by specific environmental parameters, such as hydrologic regime, nutrient availability, disturbance level, substrate type, and salinity; ecotones between vegetation types may be sharp. Using R-mode cluster analysis of pollen data, we identified diagnostic species groupings; Q-mode cluster analysis was used to differentiate pollen signatures of each vegetation type. Cluster analysis and the modern analog technique were applied to interpret vegetational and environmental trends over the last two millennia at a site in Water Conservation Area 3A. The results show that close modern analogs exist for assemblages in the core and indicate past hydrologic changes at the site, correlated with both climatic and land-use changes. The ability to differentiate marshes with different hydrologic and edaphic requirements using the pollen record facilitates assessment of relative impacts of climatic and anthropogenic changes on this wetland ecosystem on smaller spatial and temporal scales than previously were possible. ?? 2001 Elsevier Science B.V.

Review of Palaeobotany and Palynology↗
USGS2023

Carbon sequestration and subsidence reversal in the Sacramento-San Joaquin Delta and Suisun Bay: Management opportunities for climate mitigation and adaptation

The aquatic landscapes of the Sacramento–San Joaquin Delta (hereafter, the Delta) and Suisun Bay represent both a significant past and future soil carbon stock. Historical alterations of hydrologic flows have led to depletion of soil carbon stocks via emissions of carbon dioxide (CO2), and loss of elevation as a result of subsidence. Optimizing ecosystem hydrology in the Delta and Suisun Bay could both reduce and reverse subsidence while also providing significant opportunities for climate mitigation and adaptation. Emissions of greenhouse gases (GHGs)—notably CO2, methane (CH4 ), and nitrous oxide (N2O)—contribute to global warming at different rates and intensities, requiring GHG accounting and modeling to assess the relative benefits of management options. Decades of data collection, model building, and map development suggest that past and current management actions have both caused—and can mitigate—losses of soil carbon. We review here the magnitude of potential GHG offsets, management options that may be achievable, and trade-offs of carbon storage under different land management. Using a land-use/land-cover framework to assess these management options, we describe the potential of three interventions (impoundment to reverse subsidence, agricultural management, and tidal reintroduction and/or maintained connectivity), both in acreage and radiative balance to clarify their relative influence on the region’s GHG balance today and in relation to its millennial history. From floodplains to farming to floating aquatic vegetation, we find specific scalable strategies to manage hydrology that can alter regional GHG balance. Preservation of soil carbon stocks and restoration of net atmospheric CO2 fluxes into soils are the primary route to net negative emissions in the Delta and Suisun Bay, with CH4 emission management occurring in a supporting role. Over a 40-year horizon of climate-mitigation markets, the resilience of different aquatic habitats introduces the most uncertainty, from expected and unexpected hydrologic changes associated with land, ocean, and operational water flows.

California↗
USGS2022

Next-generation lampricides: A three-stage process to develop improved control tools for invasive sea lamprey

Successful integrated management of the invasive predatory sea lamprey ( Petromyzon marinus ) in the Laurentian Great Lakes of North America is owed largely to the long history of beneficial use of two lampricides: 3-trifluoromethyl-4-nitrophenol (TFM) and 2′,5-dichloro-4′-nitrosalicylanilide (niclosamide). Ensuring continued successful sea lamprey control necessitates consideration of possible next-generation lampricides to supplement or replace current lampricides. This review identifies fifteen hallmarks of success for current lampricides to be used as design criteria in a search for next-generation lampricides. A three-stage research approach is outlined. Targeted research using omics, computer modelling, and high-throughput technology to define molecular mechanisms and high probability molecular targets for sea lamprey selective toxic action is crucial to prioritizing chemical candidates. Targeted delivery or identifying synergists to existing or new lampricides can provide increased efficiency and reduced environmental impact. Ultimate development of next-generation lampricides will rely on traditional toxicity testing methodologies to ensure safety and regulatory compliance.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS1991

Pliocene-climate history of the western United States derived from lacustrine ostracodes

Pliocene sediments from several sites in western North America contain ostracodes indicating deposition in lacustrine and wetland settings. The ostracodes offer a means of reconstructing the aquatic paleoenvironment. Because water temperature, chemistry, and lake volume are coupled to climate, reconstruction of these parameters provides a direct insight into Pliocene climate. The site ages were determined from tephrochronology, paleomagnetics, and associated mammals. The morphology of many ostracode species also provides direct information about the paleoenvironment in which they lived. During the Pliocene (about 3.5-2.5 Ma) some species have unusually ornate carapace morphology indicative of large geologically stable lakes, which must have required a stable climate to sustain them. North American Pliocene climate changed from a modern-like state 4.5-3.5 Ma to a period with greater precipitation and less evaporation than today, 3.5-2.5 Ma. This wetter period, inferred from the large geologically long-lived lakes, implies a stable atmospheric circulation pattern. The stable circulation pattern collapsed around 2.5 Ma and climate returned to a modern-like situation.

western United States↗
USGS2018

Rapid evolution meets invasive species control: The potential for pesticide resistance in sea lamprey

Rapid evolution of pest, pathogen and wildlife populations can have undesirable effects; for example, when insects evolve resistance to pesticides or fishes evolve smaller body size in response to harvest. A destructive invasive species in the Laurentian Great Lakes, the sea lamprey (Petromyzon marinus) has been controlled with the pesticide 3-trifluoromethyl-4-nitrophenol (TFM) since the 1950s. We evaluated the likelihood of sea lamprey evolving resistance to TFM by (1) reviewing sea lamprey life history and control; (2) identifying physiological and behavioural resistance strategies; (3) estimating the strength of selection from TFM; (4) assessing the timeline for evolution; and (5) analyzing historical toxicity data for evidence of resistance. The number of sea lamprey generations exposed to TFM was within the range observed for fish populations where rapid evolution has occurred. Mortality from TFM was estimated as 82-90%, suggesting significant selective pressure. However, 57 years of toxicity data revealed no increase in lethal concentrations of TFM. Vigilance and the development of alternative controls are required to prevent this aquatic invasive species from evolving strategies to evade control.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2011

Setting limits: Using air pollution thresholds to protect and restore U.S. ecosystems

More than four decades of research provide unequivocal evidence that sulfur, nitrogen, and mercury pollution have altered, and will continue to alter, our nation's lands and waters. The emission and deposition of air pollutants harm native plants and animals, degrade water quality, affect forest productivity, and are damaging to human health. Many air quality policies limit emissions at the source but these control measures do not always consider ecosystem impacts. Air pollution thresholds at which ecological effects are observed, such as critical loads, are effective tools for assessing the impacts of air pollution on essential ecosystem services and for informing public policy. U.S. ecosystems can be more effectively protected and restored by using a combination of emissions-based approaches and science-based thresholds of ecosystem damage. Based on the results of a comprehensive review of air pollution thresholds, we conclude: ??? Ecosystem services such as air and water purification, decomposition and detoxification of waste materials, climate regulation, regeneration of soil fertility, production and biodiversity maintenance, as well as crop, timber and fish supplies are impacted by deposition of nitrogen, sulfur, mercury and other pollutants. The consequences of these changes may be difficult or impossible to reverse as impacts cascade throughout affected ecosystems. ??? The effects of too much nitrogen are common across the U.S. and include altered plant and lichen communities, enhanced growth of invasive species, eutrophication and acidification of lands and waters, and habitat deterioration for native species, including endangered species. ??? Lake, stream and soil acidification is widespread across the eastern United States. Up to 65% of lakes within sensitive areas receive acid deposition that exceeds critical loads. ??? Mercury contamination adversely affects fish in many inland and coastal waters. Fish consumption advisories for mercury exist in all 50 states and on many tribal lands. High concentrations of mercury in wildlife are also widespread and have multiple adverse effects. ??? Air quality programs, such as those stemming from the 1990 Clean Air Act Amendments, have helped decrease air pollution even as population and energy demand have increased. Yet, they do not adequately protect ecosystems from long-term damage. Moreover they do not address ammonia emissions. ??? A stronger ecosystem basis for air pollutant policies could be established through adoption of science-based thresholds. Existing monitoring programs track vital information needed to measure the response to policies, and could be expanded to include appropriate chemical and biological indicators for terrestrial and aquatic ecosystems and establishment of a national ecosystem monitoring network for mercury. The development and use of air pollution thresholds for ecosystem protection and management is increasing in the United States, yet threshold approaches remain underutilized. Ecological thresholds for air pollution, such as critical loads for nitrogen and sulfur deposition, are not currently included in the formal regulatory process for emissions controls in the United States, although they are now considered in local management decisions by the National Park Service and U.S. Forest Service. Ecological thresholds offer a scientifically sound approach to protecting and restoring U.S. ecosystems and an important tool for natural resource management and policy. ?? The Ecological Society of America.

Issues in Ecology↗
USGS2008

Environmental presence and persistence of pharmaceuticals: An overview

Emerging contaminants (ECs) in the environment – that is, chemicals with domestic, municipal, industrial, or agricultural sources that are not commonly monitored but may have the potential for adverse environmental effects – is a rapidly growing field of research. The use of “emerging” is not intended to infer that the presence of these compounds in the environment is new. These chemicals have been released into the environment as long as they have been in production or, in the case of hormones and other endogenous compounds, since the rise of animal life. What is emerging is the interest by the scientific and lay communities in the presence of these chemicals in the environment, the analytical capabilities required for detection, and the subtle effects that very small concentrations of these chemicals appear to have on aquatic biota. In December 2006, Environmental Science & Technology devoted an entire special issue (volume 40, number 23) to the topic of ECs, illustrating the increased interest in the subject. Within the EGs, one particular class that has seen a substantial increase in research over the past 10 years is pharmaceuticals and personal-care products (PPCPs). This increased research interest can be demonstrated by several means, including requests for proposals from funding agencies, but the clearest indication of a focused effort to understand the introduction, transformation, and potential health and environmental effects of PPCPs and ECs, in general, is the number of published reports. This increase can be shown by examining six environmental journals that regularly publish PPCP-related papers – Chemosphere , Environmental Science & Technology , Environmental Toxicology and Chemistry , Science of the Total Environment , Water Research , and Water Science and Technology . In 1998 there were 22 papers published on pharmaceuticals, antibiotics, or drugs in these 6 journals; by 2006, this number increased sixfold to 132 papers (Figure 1.1). This growth can be attributed to a number of factors. The presence of pharmaceuticals in surface-water samples from Europe and the United States was documented in several sentinel papers. These ground-breaking works encouraged other scientists to examine the rivers, streams, lakes, and reservoirs in their regions for such chemicals. In addition, the intense public attention paid to news reports on the environmental detections of these chemicals and possible effects of aquatic life has made this issue visible to the wastewater-treatment, drinking-water treatment, and regulatory communities. This has driven the funding bodies associated with these communities to fund studies or request proposals that address the presence, fate, and effects of PPCPs in aquatic systems. The release of the first comprehensive reconnaissance of pharmaceuticals and other wastewater contaminants in the United States provides an example of the intense media interest in this topic. Within 6 days on online publication of this study, 72 newspapers across the United States had published articles describing the results, either locally written or based on international media syndicate reports. There also was substantial concurrent coverage by local and national radio and television outlets, including the Cable News Network, ABC World News Tonight , and National Public Radio. A substantial fraction of these news stories may be attributable to press releases and media briefings prior to publication. However, the interest by television and print journalists in reporting the results of a peer-reviewed journal article to the general public was motivated by the recognition that describing the presence of PPCPs in water supplies would be of interest to the public. To better convey the results of the study published by Koplin et al. to the public, a separate general-interest fact sheet was published to summarize the important points of the study. Because PPCPs are commonly and widely used by individuals, there is likely a preexisting, personal identification with these compounds that does not occur for the wide range of other organic and inorganic contaminants whose presence in the environment has previously been described. This greater public “name recognition” makes itself known through the media to the regulatory and technical community and has prompted interest in sponsoring research that defines the composition and concentrations of PPCPs in potential sources and their fate and effects following relase into the environment. Independent of the drivers that potentially fuel the interest in studies of PPCPs, it is clear that PPCP research has grown beyond surface-water studies to examine issues such as: • Presence in other matrices, such as groundwater, landfill leachates, sediments, and biosolids. • Environmental transport and fate in surface water, groundwater, and soils amended with reclaimed water or biosolids. • PPCP source elucidation, such as wastewater treatment plant (WWTP) effluents, confined animal feeding operations (CAFOs), and aquaculture. • Removal during wastewater and drinking-water treatment. • Effects on aquatic ecosystems, terrestrial ecosystems, and human health. The chapters in this book provide an extensive examination of current environmental pharmaceutical research and are divided into three sections: “Occurrence and Analysis of Pharmaceuticals in the Environment,” “Environment Fate and Transformations of Veterinary Pharmaceuticals,” and “treatment of Pharmaceuticals in Drinking Water and Wastewater.” The purpose of this introductory overview chapter is to outline current (2004-2006) knowledge about the presence and concentration of PPCPs as described in the published literature. Previous reviews should be consulted for discussions on pre-2004 publications. Those reviews will provide the reader with a comprehensive introduction to the topic of PPCPs in the environment. This chapter describes the sources of PPCPs and other organic contaminants often associated with human wastewater into the environment, the range of concentrations present in various environmental compartments, and the potential routes of removal/sequestration. An overview of the sources and fate of veterinary pharmaceuticals will be discussed in Chapter 5, “Fate and Transport of Veterinary Medicines in the Soil Environment.”

Book chapter↗
USGS2023

Sentinel responses of Arctic freshwater systems to climate: linkages, evidence, and a roadmap for future research

While the sentinel nature of freshwater systems is now well recognized, widespread integration of freshwater processes and patterns into our understanding of broader climate-driven Arctic terrestrial ecosystem change has been slow. We review the current understanding across Arctic freshwater systems of key sentinel responses to climate, which are attributes of these systems with demonstrated and sensitive responses to climate forcing. These include ice regimes, temperature and thermal structure, river baseflow, lake area and water level, permafrost-derived dissolved ions and nutrients, carbon mobilization (dissolved organic carbon, greenhouse gases, and radiocarbon), dissolved oxygen concentrations, lake trophic state, various aquatic organisms and their traits, and invasive species. For each sentinel, our objectives are to clarify linkages to climate, describe key insights already gained, and provide suggestions for future research based on current knowledge gaps. We suggest that tracking key responses in Arctic freshwater systems will expand understanding of the breadth and depth of climate-driven Arctic ecosystem changes, provide early indicators of looming, broader changes across the landscape, and improve protection of freshwater biodiversity and resources.

Arctic Science↗
USGS2014

Abundance of host fish and frequency of glochidial parasitism in fish assessed in field and laboratory settings and frequency of juvenile mussels or glochidia recovered from hatchery-held fish, central and southeastern Texas, 2012-13

In 2012–13, the U.S. Geological Survey (USGS), in cooperation with the U.S. Fish and Wildlife Service (USFWS), completed the first phase of a two-phase study of mussel host-fish relations for five endemic mussel species in central and southeastern Texas that were State-listed as threatened on January 17, 2010: (1) Texas fatmucket ( Lampsilis bracteata ), (2) golden orb ( Quadrula aurea ), (3) smooth pimpleback ( Quadrula houstonensis ), (4) Texas pimpleback ( Quadrula petrina ), and (5) Texas fawnsfoot ( Truncilla macrodon ). On October 6, 2011, the USFWS announced the completion of a status review and determined that the five mussel species warranted listing under the Endangered Species Act; however, listing of these species at that time was precluded by higher priority listing actions, and currently (December 2014), they remained unlisted. Freshwater mussels are long-lived, sedentary organisms that spend their larval stage as obligate parasites on the gills or fins of fishes, and many of these larvae, which are referred to as “glochidia,” can survive only on a narrow range of host-fish species. Results from both study phases are likely to provide information useful for propagation of rare mussels, reintroduction of host fish, population and reproduction monitoring, habitat restoration and enhancement, and adaptive management. The abundance of host fish, frequency of parasitism in fish, and frequency of juvenile mussels or glochidia recovered from hatchery-held fish was assessed by collecting fish and mussels at 14 sites distributed among seven streams in central and southeastern Texas (juvenile mussels and glochidia were not differentiated in hatchery-held fish). All fish collected and assessed in this study were wild-caught. Qualitative surveys of the resident mussel communities were made, focusing on the five candidate species. A subsample (3 percent in 2012 and 19 percent in 2013) of the fish collected during aquatic biota surveys was submitted to the USFWS San Marcos National Fish Hatchery and Technology Center to collect juvenile mussels and glochidia recovered from the host fish, which were held for 28 days in holding tanks to allow time for most of the attached glochidia to release from the gills of the fish after transforming into juvenile mussels. All fish not sent to the hatchery were assessed for glochidia in the field or in the USGS Texas Water Science Center laboratory in Austin, Tex. Juvenile mussels and glochidia that were recovered from fish at the hatchery were submitted for use in the second phase of this study, the development of deoxyribonucleic acid (DNA) identification keys to determine mussel and host-fish relationships through DNA-based molecular identification (DNA typing of the juvenile mussels and glochidia). Reporting on the results of DNA-based molecular identification research is beyond the scope of this report. In 2012, the majority of the fish that were collected, in terms of total number and species types, belonged to the sunfish family Centrarchidae (centrarchids; 1,277 individuals and at least 10 species). Redbreast sunfish ( Lepomis auritus ) was the most common species collected in 2012 (603 individuals), but the largemouth bass ( Micropterus salmoides ) species was caught at all 10 sites. The largest number of species (19) was collected at the San Saba Menard site (San Saba River near Menard, Tex.) on May 22, 2012. In 2013, most of the fish that were collected, in terms of total number and species types, were centrarchids (763 individuals) and cyprinids (10 species), respectively. Blacktail shiner ( Cyprinella venusta ) was the most common species collected in 2013 (287 individuals), but bluegill ( Lepomis macrochirus ) was the only species that was caught at all nine sites. The largest number of individuals (382) and species (19) was collected from the Colorado Columbus site (Colorado River near Columbus, Tex.) on June 11, 2013. A minimum of two fish (any species) parasitized with glochidia was collected from each of the 10 sites sampled during 2012. The highest percentage of parasitized fish (19.1 percent) was measured at the Guadalupe Victoria site (Guadalupe River near Victoria, Tex.). The catfish family Ictaluridae (ictalurids) exhibited the highest proportion of parasitized fish (12.1 percent). Of the nine sites sampled in 2013, the Pedernales Fredericksburg site (Pedernales River near Fredericksburg, Tex.) had the highest proportion of parasitized fish at 22.7 percent. Ictalurids again exhibited the highest frequency of parasitism (26.5 percent). Of the fish that were not sent to the hatchery but assessed for glochidia in the field or in the laboratory in 2012, at least 13 species were parasitized, and longear sunfish ( Lepomis megalotis ) was the species with the highest percentage of parasitized individuals (17.3 percent). Of the fish that were not sent to the hatchery but assessed for glochidia in the field or in the laboratory in 2013, only eight species were parasitized, and flathead catfish ( Pylodictis olivaris ) was the species with the highest percentage of parasitized individuals (42.9 percent). With the exception of the San Antonio Charco site, fish were submitted to the hatchery from all sampling sites in 2013. During the first sampling period in 2013 (April 1–5), slightly more than half (16 out of 29) of the fish species (on a per site basis) that were submitted to the hatchery released juvenile mussels and glochidia. Compared to the other sampling periods in 2013, substantially fewer glochidia per fish were present on fish submitted to the hatchery during the second sampling period in 2013 (April 29–May 2). Although only two sites were sampled during the third sampling period in 2013 (June 10–11), more juvenile mussels and glochidia were recovered at the hatchery during this sampling period (107) than were recovered during the first two sampling periods in 2013 combined (102). An average of 17 juvenile mussels or glochidia was recovered per largemouth bass submitted to the hatchery from the Guadalupe Victoria site during the third sampling period. A total of 19 fish species collected at nine sites was submitted to the hatchery in 2013, and 14 of these species had juvenile mussels or glochidia that were recovered at the hatchery. The three most productive species, in terms of the average number of juvenile mussels or glochidia recovered, were longear sunfish, spotted bass, and largemouth bass, each of which averaged more than two juvenile mussels or glochidia recovered per individual.

Texas↗
USGS2000

Aquatic ecosystem protection and restoration: Advances in methods for assessment and evaluation

Many methods and criteria are available to assess aquatic ecosystems, and this review focuses on a set that demonstrates advancements from community analyses to methods spanning large spatial and temporal scales. Basic methods have been extended by incorporating taxa sensitivity to different forms of stress, adding measures linked to system function, synthesizing multiple faunal groups, integrating biological and physical attributes, spanning large spatial scales, and enabling simulations through time. These tools can be customized to meet the needs of a particular assessment and ecosystem. Two case studies are presented to show how new methods were applied at the ecosystem scale for achieving practical management goals. One case used an assessment of biotic structure to demonstrate how enhanced river flows can improve habitat conditions and restore a diverse fish fauna reflective of a healthy riverine ecosystem. In the second case, multitaxonomic integrity indicators were successful in distinguishing lake ecosystems that were disturbed, healthy, and in the process of restoration. Most methods strive to address the concept of biological integrity and assessment effectiveness often can be impeded by the lack of more specific ecosystem management objectives. Scientific and policy explorations are needed to define new ways for designating a healthy system so as to allow specification of precise quality criteria that will promote further development of ecosystem analysis tools.

Environmental Science and Policy↗
USGS2008

Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: A review

Mangrove ecosystems are considered vulnerable to climate change as coastal development limits the ecosystem services and adaptations important to their survival. Although they appear rather simple in terms of species diversity, their ecology is complex due to interacting geophysical forces of tides, surface runoff, river and groundwater discharge, waves, and constituents of sediment, nutrients and saltwater. These interactions limit developing a comprehensive framework for science-based sustainable management practices. A suite of models have been developed independently by various academic and government institutions worldwide to understand the dynamics of mangrove ecosystems and to provide ecological forecasting capabilities under different management scenarios and natural disturbance regimes. The models have progressed from statistical tables representing growth and yield to more sophisticated models describing various system components and processes. Among these models are three individual-based models (IBMs) (FORMAN, KIWI, and MANGRO). A comparison of models’ designs reveal differences in the details of process description, particularly, regarding neighbor competition among trees. Each model has thus its specific range of applications. Whereas FORMAN and KIWI are most suitable to address mangrove forest dynamics of stands, MANGRO focuses on landscape dynamics on larger spatial scale. A comparison of the models and a comparison of the models with empirical knowledge further reveal the general needs for further field and validation studies to advance our ecological understanding and management of mangrove wetlands.

Aquatic Botany↗
USGS2024

Habitat use of anadromous and amphidromous sturgeons in North America: A systematic review

Sturgeons are among the most endangered fishes in the world. Identifying habitat use characteristics to inform restoration projects is crucial for recovery. However, small sample sizes, inadequate replication of studies, and limited spatial extents complicate our ability to effectively apply the findings of single studies to endangered species conservation across the larger riverscape. We synthesized information from amphidromous and anadromous sturgeons in North America to identify species-specific knowledge gaps and conduct a quantitative comparison of species–habitat relationships. We provided a qualitative summary of substrate use and synthesized estimates of depth and velocity during spawning and non-spawning activity. Generalized patterns among species were identified, such as spawning in fast water on hard substrate and then using slow water with soft substrate areas when not spawning. We noted species-specific variability during spawning that may be attributed to historical maximum length, egg characteristics, and watershed features. This study provides some of the first estimates of habitat use that can be adapted for many populations. Results can contribute to empirically grounded decision-support tools used to prioritize information needs for recovery.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS1984

Distribution and abundance of manatees along the northern coast of the Gulf of Mexico

A review of historical and recent records of manatee ( Trichechus manatus ) sightings along the coast of the northern Gulf of Mexico indicates that their numbers have declined in Texas, but increased in Louisiana and Mississippi. This is due to their extirpation in Mexico and dramatic increase along the southern Big Bend coast of northwestern peninsular Florida. The distribution of manatees along the southern Big Bend coast is related to their need for warm water and the distribution of fresh water and submerged aquatic and marine food plants. The spring-fed headwaters of Crystal and Homosassa rivers are important warm water winter refuges; nearly 90% of the same individuals return each winter. The estuaries and grass beds associated with these two rivers and the Suwannee, Withlacoochee, and Chasshowitzka rivers are the principal summer habitats. The Suwannee and Crystal rivers are "high-use" rivers, whereas the other three are "low-use" rivers. Low human-caused mortality, high fecundity, some immigration, and high site fidelity are responsible for the increasing numbers of manatees using the southern Big Bend coast. Since this region of Florida has experienced relatively little development compared with the rest of the state, the best long-term future for this endangered marine mammal in the United States lies along the southern Big Bend coast.

Alabama, Florida, Louisiana, Mississippi, Texas↗