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At least 73 records · Page 4Linked to original sources
USGS2022

Discovery of prolactin-like in lamprey: Role in osmoregulation and new insight into the evolution of the growth hormone/prolactin family

We used a representative of one of the oldest extant vertebrate lineages (jawless fish or agnathans) to investigate the early evolution and function of the growth hormone (GH)/prolactin (PRL) family. We identified a second member of the GH/PRL family in an agnathan, the sea lamprey ( Petromyzon marinus ). Structural, phylogenetic, and synteny analyses supported the identification of this hormone as prolactin-like (PRL-L), which has led to added insight into the evolution of the GH/PRL family. At least two ancestral genes were present in early vertebrates, which gave rise to distinct GH and PRL-L genes in lamprey. A series of gene duplications, gene losses, and chromosomal rearrangements account for the diversity of GH/PRL-family members in jawed vertebrates. Lamprey PRL-L is produced in the proximal pars distalis of the pituitary and is preferentially bound by the lamprey PRL receptor, whereas lamprey GH is preferentially bound by the lamprey GH receptor. Pituitary PRL-L messenger RNA (mRNA) levels were low in larvae, then increased significantly in mid-metamorphic transformers (stage 3); thereafter, levels subsided in final-stage transformers and metamorphosed juveniles. The abundance of PRL-L mRNA and immunoreactive protein increased in the pituitary of juveniles under hypoosmotic conditions, and treatment with PRL-L blocked seawater-associated inhibition of freshwater ion transporters. These findings clarify the origin and divergence of GH/PRL family genes in early vertebrates and reveal a function of PRL-L in osmoregulation of sea lamprey, comparable to a role of PRLs that is conserved in jawed vertebrates.

PNAS↗
USGS2024

Landscape fragmentation overturns classical metapopulation thinking

Habitat loss and isolation caused by landscape fragmentation represent a growing threat to global biodiversity. Existing theory suggests that the process will lead to a decline in metapopulation viability. However, since most metapopulation models are restricted to simple networks of discrete habitat patches, the effects of real landscape fragmentation, particularly in stochastic environments, are not well understood. To close this major gap in ecological theory, we developed a spatially explicit, individual-based model applicable to realistic landscape structures, bridging metapopulation ecology and landscape ecology. This model reproduced classical metapopulation dynamics under conventional model assumptions, but on fragmented landscapes, it uncovered general dynamics that are in stark contradiction to the prevailing views in the ecological and conservation literature. Notably, fragmentation can give rise to a series of dualities: a) positive and negative responses to environmental noise, b) relative slowdown and acceleration in density decline, and c) synchronization and desynchronization of local population dynamics. Furthermore, counter to common intuition, species that interact locally (“residents”) were often more resilient to fragmentation than long-ranging “migrants.” This set of findings signals a need to fundamentally reconsider our approach to ecosystem management in a noisy and fragmented world.

PNAS↗
USGS2023

Frequent transitions in mating-type locus chromosomal organization in Malassezia and early steps in sexual reproduction

Fungi in the basidiomycete genus Malassezia are the most prevalent eukaryotic microbes resident on the skin of human and other warm-blooded animals and have been implicated in skin diseases and systemic disorders. Analysis of Malassezia genomes revealed that key adaptations to the skin microenvironment have a direct genomic basis, and the identification of mating/meiotic genes suggests a capacity to reproduce sexually, even though no sexual cycle has yet been observed. In contrast to other bipolar or tetrapolar basidiomycetes that have either two linked mating-type-determining ( MAT ) loci or two MAT loci on separate chromosomes, in Malassezia species studied thus far the two MAT loci are arranged in a pseudobipolar configuration (linked on the same chromosome but capable of recombining). By generating additional chromosome-level genome assemblies, and an improved Malassezia phylogeny, we infer that the pseudobipolar arrangement was the ancestral state of this group and revealed six independent transitions to tetrapolarity, seemingly driven by centromere fission or translocations in centromere-flanking regions. Additionally, in an approach to uncover a sexual cycle, Malassezia furfur strains were engineered to express different MAT alleles in the same cell. The resulting strains produce hyphae reminiscent of early steps in sexual development and display upregulation of genes associated with sexual development as well as others encoding lipases and a protease potentially relevant for pathogenesis of the fungus. Our study reveals a previously unseen genomic relocation of mating-type loci in fungi and provides insight toward the identification of a sexual cycle in Malassezia , with possible implications for pathogenicity.

PNAS↗
USGS2023

Sea ice concentration decline in an important Adélie penguin molt area

Unlike in many polar regions, the spatial extent and duration of the sea ice season have increased in the Ross Sea sector of the Southern Ocean during the satellite era. Simultaneously, populations of Adélie penguins, a sea ice obligate, have been stable or increasing in the region. Relationships between Adélie penguin population growth and sea ice concentration are complex, with sea ice driving different, sometimes contrasting, demographic patterns. Adélie penguins undergo a complete molt annually, replacing all their feathers while fasting shortly after the breeding season. Unlike most penguin species, a majority of Adélies are thought to molt on sea ice, away from the breeding colonies, which makes this period particularly difficult to study. Here, we evaluate the hypothesis that persistent areas of high sea ice concentration provide important molting habitat for Adélie penguins. We analyzed data from geolocating dive recorders deployed year-round on 195 adult penguins at two colonies in the Ross Sea from 2017-2019. We identified molt by detecting extended gaps in post-breeding diving activity and used associated locations to define two key molting areas. Remotely sensed data indicated that sea ice concentration during molt was anomalously low during the study and has declined in the primary molt area since 1980. Further, annual return rates of penguins to breeding colonies were positively correlated with sea ice concentration in the molt areas over 20 years. Together these results suggest that sea ice conditions during Adélie penguin molt may represent a previously underappreciated annual bottleneck for adult survival.

PNAS↗
USGS2024

Using global remote camera data of a solitary species complex to evaluate the drivers of group formation

The social system of animals involves a complex interplay between physiology, natural history, and the environment. Long relied upon discrete categorizations of “social” and “solitary” inhibit our capacity to understand species and their interactions with the world around them. Here, we use a globally distributed camera trapping dataset to test the drivers of aggregating into groups in a species complex (martens and relatives, family Mustelidae , Order Carnivora ) assumed to be obligately solitary. We use a simple quantification, the probability of being detected in a group, that was applied across our globally derived camera trap dataset. Using a series of binomial generalized mixed-effects models applied to a dataset of 16,483 independent detections across 17 countries on four continents we test explicit hypotheses about potential drivers of group formation. We observe a wide range of probabilities of being detected in groups within the solitary model system, with the probability of aggregating in groups varying by more than an order of magnitude. We demonstrate that a species’ context-dependent proclivity toward aggregating in groups is underpinned by a range of resource-related factors, primarily the distribution of resources, with increasing patchiness of resources facilitating group formation, as well as interactions between environmental conditions (resource constancy/winter severity) and physiology (energy storage capabilities). The wide variation in propensities to aggregate with conspecifics observed here highlights how continued failure to recognize complexities in the social behaviors of apparently solitary species limits our understanding not only of the individual species but also the causes and consequences of group formation.

PNAS↗
USGS2024

Increasing phosphorus loss despite widespread concentration decline in US rivers

The loss of phosphorous (P) from the land to aquatic systems has polluted waters and threatened food production worldwide. Systematic trend analysis of P, a nonrenewable resource, has been challenging, primarily due to sparse and inconsistent historical data. Here, we leveraged intensive hydrometeorological data and the recent renaissance of deep learning approaches to fill data gaps and reconstruct temporal trends. We trained a multitask long short-term memory model for total P (TP) using data from 430 rivers across the contiguous United States (CONUS). Trend analysis of reconstructed daily records (1980–2019) shows widespread decline in concentrations, with declining, increasing, and insignificantly changing trends in 60%, 28%, and 12% of the rivers, respectively. Concentrations in urban rivers have declined the most despite rising urban population in the past decades; concentrations in agricultural rivers however have mostly increased, suggesting not-as-effective controls of nonpoint sources in agriculture lands compared to point sources in cities. TP loss, calculated as fluxes by multiplying concentration and discharge, however exhibited an overall increasing rate of 6.5% per decade at the CONUS scale over the past 40 y, largely due to increasing river discharge. Results highlight the challenge of reducing TP loss that is complicated by changing river discharge in a warming climate.

conterminous United States↗
USGS2025

State shifts in the deep Critical Zone drive landscape evolution in volcanic terrains

Understanding the near-surface environment where atmospheric and solid earth processes interact, often termed the “Critical Zone,” is important for assessing resources and building resilient societies. Here, we examine a volcanic landscape in the Oregon Cascade Range, an understudied Critical Zone setting that is host to major regional water resources, pervasive silicate weathering, and significant geohazards. We leverage a bedrock age chronosequence to show that the volcanic Critical Zone undergoes a structural shift, from depth extents of >1 km to meters, over timescales of ~1 My. We map an active groundwater volume comparable to major continental lakes, stored at the Cascade Range crest. This state shift makes volcanic landscape evolution a unique probe of deep coupling between Earth systems.

PNAS↗
USGS2025

Abrupt changes in algal biomass of thousands of US lakes are related to climate and are more likely in low-disturbance watersheds.

Climate change is predicted to intensify lake algal blooms globally and result in regime shifts. However, observed increases in algal biomass do not consistently correlate with air temperature or precipitation, and evidence is lacking for a causal effect of climate or the nonlinear dynamics needed to demonstrate regime shifts. We modeled the causal effects of climate on annual lake chlorophyll (a measure of algal biomass) over 34 y for 24,452 lakes across broad ecoclimatic zones of the United States and evaluated the potential for regime shifts. We found that algal biomass was causally related to climate in 34% of lakes. In these cases, 71% exhibited abrupt but mostly temporary shifts as opposed to persistent changes, 13% had the potential for regime shifts. Climate was causally related to algal biomass in lakes experiencing all levels of human disturbance, but with different likelihood. Climate causality was most likely to be observed in lakes with minimal human disturbance and cooler summer temperatures that have increased over the 34 y studied. Climate causality was variable in lakes with low to moderate human disturbance, and least likely in lakes with high human disturbance, which may mask climate causality. Our results explain some of the previously observed heterogeneous climate responses of lake algal biomass globally and they can be used to predict future climate effects on lakes.

continental United States↗
USGS2025

Increased flood exposure in the Pacific Northwest following earthquake-driven subsidence and sea-level rise

Climate-driven sea-level rise is increasing the frequency of coastal flooding worldwide, exacerbated locally by factors like land subsidence from groundwater and resource extraction. However, a process rarely considered in future sea-level rise scenarios is sudden (over minutes) land subsidence associated with great (>M8) earthquakes, which can exceed 1 m. Along the Washington, Oregon, and northern California coasts, the next great Cascadia subduction zone earthquake could cause up to 2 m of sudden coastal subsidence, dramatically raising sea level, expanding floodplains, and increasing the flood risk to local communities. Here, we quantify the potential expansion of the 1% floodplain (i.e., the area with an annual flood risk of 1%) under low (~0.5 m), medium (~1 m), and high (~2 m) earthquake-driven subsidence scenarios at 24 Cascadia estuaries. If a great earthquake occurred today, floodplains could expand by 90 km 2 (low), 160 km 2 (medium), or 300 km 2 (high subsidence), more than doubling the flooding exposure of residents, structures, and roads under the high subsidence scenario. By 2100, when climate-driven sea-level rise will compound the hazard, a great earthquake could expand floodplains by 170 km 2 (low), 240 km 2 (medium), or 370 km 2 (high subsidence), more than tripling the flooding exposure of residents, structures, and roads under the high subsidence scenario compared to the 2023 floodplain. Our findings can support decision-makers and coastal communities along the Cascadia subduction zone as they prepare for compound hazards from the earthquake cycle and climate-driven sea-level rise and provide critical insights for tectonically active coastlines globally.

California, Oregon, Washington↗
USGS2025

Three decades of declines restructure butterfly communities in the Midwestern United States

Insects are declining worldwide, yet gaps remain in our understanding of how declines are distributed across species within communities. Using three decades of butterfly monitoring data aggregated from the Midwestern United States, we found that no butterfly species increased in abundance from 1992 to 2023. 59 out of 136 species declined (annual mean trend: −1.2 to −6.9% per year) with losses distributed across all functional groups including residents, migrants, rare, and common species. Community composition changed such that abundance is now more even across species, driven by more severe losses in abundance—but not richness—of common species compared to rare species. These widespread declines are likely cascading across ecosystems. Conservation efforts that focus on entire communities could mitigate butterfly biodiversity loss.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗
USGS2025

Ecologically informed solar enables a sustainable energy transition in U.S. croplands

United States (U.S.) croplands are ideal recipient environments for solar photovoltaic (PV) energy because they are flat and have a high solar resource. Perceived threats of solar to agriculture have led some stakeholders to suggest that croplands be exclusively used to produce food. However, 12 million hectares of U.S. croplands, an area about the size of New York State, are already dedicated to corn grown for ethanol (i.e., biofuel), an energy product that requires significantly more land than solar PV per unit energy. Ecosystem service benefits of an ecologically-informed approach to solar development (i.e., ecovoltaics), coupled with significant land-use advantages over corn ethanol, make solar an attractive solution for a sustainable energy transition in croplands. Here, we evaluated how the conversion of a small fraction of corn-ethanol croplands into ecovoltaic solar facilities might improve land-use efficiency of energy generation, enhance ecosystem services, and provide landscape diversification. Through spatial analyses, we determined that converting just 3.2% of land currently used for corn ethanol would increase the share of utility-scale solar energy in the U.S. from 3.9% to 13%. We also identified target locations where strategic conversion of corn ethanol to solar PV co-located with perennial vegetation could filter excess nutrients transported from adjacent farm runoff, diversify and connect agricultural landscapes, and provide local wildlife habitat. In contrast to the common perception of land-use competition and land scarcity in the energy transition, our findings highlight benefits of co-located energy landscapes that integrate fundamental principles of energy development and sustainable agroecosystems.

contiguous United States↗
USGS2025

Chlorophyll trends are negative for lakes but positive for estuarine–coastal waters

Nutrient (nitrogen and phosphorus) pollution is an environmental problem of global concern because overenrichment of water bodies increases phytoplankton biomass and ecosystem metabolism, depletes oxygen in bottom waters, and increases the frequency and intensity of harmful algal blooms. These responses to nutrient pollution have motivated policies to reduce anthropogenic nutrient inputs. However, these policies have not been universally implemented and their success at reducing phytoplankton biomass is confounded by other components of global change that regulate the conversion of nutrients into biomass. These regulating processes themselves are changing in the Anthropocene. Our study is an assessment of changing phytoplankton biomass over the period 2000–2019, using chlorophyll a trends measured in 191 lakes and 159 estuarine-coastal sites. Our results show that phytoplankton biomass has decreased in most lakes, increased in most coastal sites, and the largest trends have been predominantly negative for lakes and positive for coastal sites. These results provide evidence of opposing directions of phytoplankton biomass change between lakes and coastal sites in this recent period of unprecedented global change. Nutrient pollution is a knotty environmental problem, and our study indicates that it might be a particularly challenging problem for ecosystems situated in densely populated landscapes where freshwater and sea water meet. Success at overcoming this challenge will require deeper scientific understanding of changes in processes that regulate the conversion of nutrients into phytoplankton biomass, substantial investments of time and resources to reduce nutrient inputs, and a flexible strategy designed to anticipate and adapt to a changing world.

PNAS↗
USGS2025

Rising rates of wildfire building destruction in the conterminous United States

Many regions of the world have seen an increase in highly destructive wildfires, driven by well-documented increases in burned area and growth of housing in the wildland–urban interface (WUI), which exposes more homes to fire. However, it is unclear whether wildfires are also becoming more destructive due to changes in wildfire behavior or in the development patterns of exposed communities. Here, we assessed trends in wildfire building exposure and destruction rates in the conterminous United States from 2002 to 2022. We mapped destroyed and surviving buildings within 100 m of all wildfires that destroyed 10 or more buildings (n = 362) and assessed trends relative to major ecoregions and vegetation types. We used logistic regression to assess relationships between destruction rates and landscape factors. We found that 10% of exposed buildings were destroyed in 2002–2012, but this percentage increased to 32% in 2013–2022. This increase was largely due to greater building exposure in evergreen forests in the northwestern United States, where exposed buildings were more than 3.4 times as likely to be destroyed as those in grass and shrublands. However, annual destruction rates also significantly increased in all other vegetation types and were correlated with development type, weather, and burn severity. These results indicate that increasing wildfire destruction in the United States has resulted not only from increased exposure but from rising rates of building destruction, potentially indicating more extreme wildfire behavior. This finding underscores the need to better understand how fuel management, community planning, and hardening buildings can reduce vulnerability.

conterminous United States↗
USGS2025

Strategic planning of prevention and surveillance for emerging diseases and invasive species

Emerging infectious diseases and biological invasions pose increasing threats to public and ecosystems health. Proactive measures—such as prevention and surveillance taken before initial detection of the pathogen or species—are essential to ensure minimal spread prior to first detection. We developed an optimization model to determine where, when, and how much effort should be allocated to prevention versus surveillance. The model accounts for imperfect detection, system dynamics, spatial heterogeneity in risk and costs and is scalable to large landscapes. We found that the most cost-effective strategy is to maintain the prevention and surveillance efforts at stable equilibrium for the majority of the time, with deviations occurring only initially to steer the system toward the equilibrium. The equilibrium effort is jointly determined by the introduction risk, management costs, and total budget. Application of this model to chronic wasting disease in New York State suggests that the optimal strategy could reduce the cumulative disease cases before initial detection by an average of 22% compared to current practice. The optimal surveillance strategy could detect the disease on average over 8 mo earlier than the current strategy.

PNAS↗
USGS2026

Recent high-severity wildfires in a dry-conifer landscape are unprecedented over five centuries and foretell future forest loss

Dry forests of the western United States evolved with frequent, spatially extensive, low-severity fires, followed by a century of fire exclusion. Recently, these same forests have experienced large and increasingly severe fires causing widespread forest loss. To what extent do modern high-severity fires depart from pre-1900 fire regimes, and how do these departures affect the future persistence of dry-conifer forests? We address these questions using a multiscalar approach that combines the largest landscape-scale tree-ring fire-scar network in North America with neutral landscape model simulations in the Jemez Mountains of northern New Mexico. Fire scars recorded a continuous 400-y history (ca. 1500–1900 CE) of frequent, low-severity fires across individual sites, landscapes, and centuries. We evaluated whether forests exhibiting this record could plausibly persist if they had historically burned under modern patterns of high-severity fire. Across the 240,000-ha Jemez landscape, high-severity fires from 1995–2024 burned 32% of fire-scar sites and 25% of dry-conifer forests. Within the Las Conchas Fire perimeter—a 61,000 ha area reburned by multiple fires—66% of fire-scar sites and 71% of forests were burned at high severity, erasing multiple centuries of forest and fire history. Simulations indicate that the probability of the observed fire-scar network persisting under modern high-severity fire rates is near-zero ( P < 0.001). Projecting these dynamics forward indicates rapid loss of both dry-conifer forests and tree-ring fire histories—50% of modern dry-conifer forest will remain by 2055, and 24% by 2115. Modern high-severity fire regimes appear incompatible with dry-conifer forest persistence.

New Mexico↗
USGS2025

Overestimated natural biological nitrogen fixation translates to an exaggerated CO2 fertilization effect in Earth System Models

CO 2 fertilization of the terrestrial biosphere is limited by nitrogen. Biological nitrogen fixation (BNF) is the dominant natural nitrogen source to the terrestrial biosphere and can alleviate nitrogen limitation but is poorly constrained in Earth system models (ESMs). Here, we compare terrestrial BNF from an ensemble of ESMs of the 6th Coupled Model Intercomparison Project to a new global synthesis of observations across natural and agricultural biomes. We find that compared to observations, ESMs underestimate agricultural BNF but overestimate natural BNF in the present day by over 50%. Natural BNF is overestimated in the most productive ecosystems that contribute most to the terrestrial carbon sink (forests and grasslands). ESMs with different BNF representations yield a range of BNF responses to CO 2 enrichment. Some ESMs with phenomenological representations of BNF predict a natural BNF increase in response to a doubling of CO 2 that aligns with a meta-analysis of CO 2 enrichment experiments (31% increase) but fail to account for the substantial carbon cost of BNF. In contrast, ESMs with mechanistic representations of BNF account for its carbon cost as well as its regulation by nitrogen limitation but overestimate the BNF response to a doubling of CO 2 (135% increase). Overall, all current BNF representations in ESMs fall short of fully capturing its response to rising atmospheric CO 2 . Finally, we find a positive correlation between modeled present-day natural BNF and the CO 2 fertilization effect across ESMs, suggesting that overestimated natural BNF translates to an exaggerated CO 2 fertilization effect of approximately 11% in ESMs.

PNAS↗
USGS2026

Postglacial ecosystem development of a hydrothermal landscape in Yellowstone National Park

The Yellowstone geo-ecosystem has been the subject of much research, but the ecological history of the Yellowstone Plateau volcanic field and its iconic geyser basins is less known. In this investigation, paleoenvironmental analyses of sediment cores from lakes in Lower Geyser Basin were compared with regional records and paleoclimate model simulations to reconstruct the vegetation, wildfire, limnology, hydrothermal dynamics, and climate drivers since deglaciation, 15,000 to 14,000 years ago. Pollen data from Lower Geyser Basin lakes reveal the strong influence of infertile rhyolitic soils on vegetation history: an initial late-glacial steppe was replaced by lodgepole pine forest from 12.8 to 11.0 ka, with little change in forest composition or cover thereafter despite changing climate. This stability contrasts with the more dynamic vegetation response on nonrhyolite substrates in the Yellowstone region where nutrient and moisture availability is greater. Highest wildfire activity and low lake nutrient levels in Lower Geyser Basin occurred from 12 to 4 ka, when summers were substantially warmer and drier and fire-inducing vapor pressure deficits were 29 to 56% higher. The hydrothermal history, inferred from sedimentary arsenic and cesium abundances, was spatially and temporally variable but lake-forming hydrothermal events align with periods of abundant moisture. Thus, long-term changes in wildfire, limnology, and, to some extent, hydrothermal activity were governed by insolation-driven climate variations, whereas the vegetation response was muted and constrained by geologic processes. These findings suggest that warmer, drier conditions in the future could result in less hydrothermal activity yet little change in forest cover across the Yellowstone Plateau volcanic field despite more wildfires.

Idaho, Montana, Wyoming↗
USGS1994

Cytonuclear genetics of experimental fish hybrid zones inside Biosphere 2

Two species of mosquitofish (family Poeciliidae ) known to hybridize in nature were introduced into freshwater habitats inside Biosphere 2, and their population genetics were monitored after 2 years. Within four to six generations, nuclear and cytoplasmic markers characteristic of Gambusia holbrooki had risen greatly in frequency, although some Gambusia affinis alleles and haplotypes were retained primarily in recombinant genotypes, indicative of introgressive hybridization. The temporal cytonuclear dynamics proved similar to population genetic changes observed in replicated experimental hybrid populations outside of Biosphere 2, thus indicating strong directional selection favoring G. holbrooki genotypes across the range of environments monitored. When interpreted in the context of species-specific population demographies observed previously, results suggest that the extremely rapid evolution in these zones of secondary contact is attributable primarily to species differences in life-history traits.

PNAS↗