Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Journal of Testing and Evaluation”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 73 records · Page 4Linked to original sources
USGS1995

Detection and identification of aquatic birnaviruses by PCR assay

A reverse transcriptase polymerase chain reaction (RT-PCR) assay was developed for the detection and identification of aquatic birnaviruses. The four sets of primers (PrA, PrB, PrC, and PrD) that we used are specific for regions of cDNA coded by genome segment A of aquatic birnaviruses. PrA identifies a large fragment (1,180 bp) within the pVP2-coding region, and PrB identifies a 524-bp fragment within the sequence amplified by PrA. Primer set PrC frames a genome fragment (339 bp) within the NS-VP3-coding region, and PrD identifies a 174-bp sequence within the fragment identified by PrC. PrB and PrD amplified cDNAs from all nine recognized serotypes of aquatic birnavirus serogroup A as well as the N1 isolate that may represent a 10th serotype. These results indicate that these three primer sequences are highly conserved and can be used in PCR assays for group identification of these viruses. PrA routinely produced amplification products from eight serotypes but exhibited variable results with one serotype, and primer PrC identified 6 of the 11 virus isolates tested. The qualitative sensitivity of the RT-PCR assay was evaluated by comparison of the results with those of cell culture isolation assays. With the exception of one sample, the RT-PCR assay with primer PrD was as accurate as cell culture isolation for detecting virus in kidney and spleen tissues from naturally infected, asymptomatic carrier fish. These results indicate that the RT-PCR assay can be a rapid and reliable substitute for cell culture methods for the detection of aquatic birnaviruses.

Journal of Clinical Microbiology↗
USGS2017

Forecasting the probability of future groundwater levels declining below specified low thresholds in the conterminous U.S.

We present a logistic regression approach for forecasting the probability of future groundwater levels declining or maintaining below specific groundwater-level thresholds. We tested our approach on 102 groundwater wells in different climatic regions and aquifers of the United States that are part of the U.S. Geological Survey Groundwater Climate Response Network. We evaluated the importance of current groundwater levels, precipitation, streamflow, seasonal variability, Palmer Drought Severity Index, and atmosphere/ocean indices for developing the logistic regression equations. Several diagnostics of model fit were used to evaluate the regression equations, including testing of autocorrelation of residuals, goodness-of-fit metrics, and bootstrap validation testing. The probabilistic predictions were most successful at wells with high persistence (low month-to-month variability) in their groundwater records and at wells where the groundwater level remained below the defined low threshold for sustained periods (generally three months or longer). The model fit was weakest at wells with strong seasonal variability in levels and with shorter duration low-threshold events. We identified challenges in deriving probabilistic-forecasting models and possible approaches for addressing those challenges.

Journal of the American Water Resources Associatio↗
USGS2019

Understanding conservation decisions of agriculture producers

Most land in the United States (US) is privately owned and used for agriculture. To address the effect of agriculture on wildlife, conservation professionals and organizations need to understand the land use decisions made by farmers and ranchers. We developed a tool for categorizing farmers and ranchers by their conservation land use values (LUVs) to understand how those values affect their land use motivations and resultant decisions. We defined land as the whole natural environment including soil, water, plants, fish, and wildlife. We used principal axis factoring and reliability analysis to identify statements representing human-centered values and nature-centered values of farmers and ranchers. We tested the validity of the combined statements with a survey of South Dakota’s private landowners (N = 4,000, [Jan through May 2016]) resulting in the LUV scale. Crossing the average scores on the human-centered and nature-centered statements identified 4 LUV types: humans first (20%), nature first (29%), interconnected (29%), and disconnected (22%). Analysis of variance and chi-square tests showed that, compared to the humans first and disconnected LUV types, the nature first and interconnected LUV types reported significantly greater importance of the following: most categories of types of wildlife in their land use decisions; conservation-related motivations for participating in a United States Farm Bill Conservation Program; conservation-related motivations for land use decisions; and participation in conservation-related behaviors. Conservation professionals and organizations may use the LUV scale to better understand landowners’ land use decisions to evaluate and inform conservation policy, programs, messaging, and improve conservation outcomes.

Journal of Wildlife Management↗
USGS2011

Comparison of Bayesian clustering and edge detection methods for inferring boundaries in landscape genetics

Recently, techniques available for identifying clusters of individuals or boundaries between clusters using genetic data from natural populations have expanded rapidly. Consequently, there is a need to evaluate these different techniques. We used spatially-explicit simulation models to compare three spatial Bayesian clustering programs and two edge detection methods. Spatially-structured populations were simulated where a continuous population was subdivided by barriers. We evaluated the ability of each method to correctly identify boundary locations while varying: (i) time after divergence, (ii) strength of isolation by distance, (iii) level of genetic diversity, and (iv) amount of gene flow across barriers. To further evaluate the methods’ effectiveness to detect genetic clusters in natural populations, we used previously published data on North American pumas and a European shrub. Our results show that with simulated and empirical data, the Bayesian spatial clustering algorithms outperformed direct edge detection methods. All methods incorrectly detected boundaries in the presence of strong patterns of isolation by distance. Based on this finding, we support the application of Bayesian spatial clustering algorithms for boundary detection in empirical datasets, with necessary tests for the influence of isolation by distance

International Journal of Molecular Sciences↗
USGS2006

Simulation of solute transport across low-permeability barrier walls

Low-permeability, non-reactive barrier walls are often used to contain contaminants in an aquifer. Rates of solute transport through such barriers are typically many orders of magnitude slower than rates through the aquifer. Nevertheless, the success of remedial actions may be sensitive to these low rates of transport. Two numerical simulation methods for representing low-permeability barriers in a finite-difference groundwater-flow and transport model were tested. In the first method, the hydraulic properties of the barrier were represented directly on grid cells and in the second method, the intercell hydraulic-conductance values were adjusted to approximate the reduction in horizontal flow, allowing use of a coarser and computationally efficient grid. The alternative methods were tested and evaluated on the basis of hypothetical test problems and a field case involving tetrachloroethylene (PCE) contamination at a Superfund site in New Hampshire. For all cases, advective transport across the barrier was negligible, but preexisting numerical approaches to calculate dispersion yielded dispersive fluxes that were greater than expected. A transport model (MODFLOW-GWT) was modified to (1) allow different dispersive and diffusive properties to be assigned to the barrier than the adjacent aquifer and (2) more accurately calculate dispersion from concentration gradients and solute fluxes near barriers. The new approach yields reasonable and accurate concentrations for the test cases.

Journal of Contaminant Hydrology↗
USGS1986

Regional method to assess offshore slope stability.

The slope stability of some offshore environments can be evaluated by using only conventional acoustic profiling and short-core sampling, followed by laboratory consolidation and strength testing. The test results are synthesized by using normalized-parameter techniques. The normalized data are then used to calculate the critical earthquake acceleration factors or the wave heights needed to initiate failure. These process-related parameters provide a quantitative measure of the relative stability for locations from which short cores were obtained. The method is most applicable to offshore environments of gentle relief and simple subsurface structure and is not considered a substitute for subsequent site-specific analysis. -from ASCE Publications Information

Journal of Geotechnical Engineering↗
USGS2025

Exposure of infants to antibiotics via cord blood, breast milk, and formula: A review on exposure level, temporal variation, and risk assessment

The pervasive use of antibiotics across various sectors, including agriculture, medicine, and aquaculture, has led to a notable increase in environmental antibiotic residues. This phenomenon has raised significant public concern regarding the potential health risks antibiotics may pose, particularly to vulnerable populations such as infants. However, the conceptualization of exposure routes of antibiotics to infants and the associated health risks has not been conducted. This review summarized three main pathways infants are exposed to antibiotics, including umbilical cord blood, breast milk, and infant formula. Antibiotic exposure levels in infants were synthesized, examining spatial and temporal trends in antibiotic concentrations across different media through clinical testing. We also analyzed the doses of antibiotics consumed by infants over time through breast milk and formula, evaluating the associated risks. Furthermore, we explored the potential adverse effects of early-life antibiotic exposure on the infant gut microbiota, physical development, and multiple organ systems. Given the global significance of antibiotic distribution, it is pertinent to comprehensively monitor antibiotic concentrations in infants and conduct longitudinal follow-up studies on their growth and development, accurately quantifying and assessing the impacts on fetal and infant health.

Journal of Hazardous Materials↗
USGS2002

Performance of the goulden large-sample extractor in multiclass pesticide isolation and preconcentration from stream water

The reliability of the Goulden large-sample extractor in preconcentrating pesticides from water was evaluated from the recoveries of 35 pesticides amended to filtered stream waters. Recoveries greater than 90% were observed for many of the pesticides in each major chemical class, but recoveries for some of the individual pesticides varied in seemingly unpredictable ways. Corrections cannot yet be factored into liquid-liquid extraction theory to account for matrix effects, which were apparent between the two stream waters tested. The Goulden large-sample extractor appears to be well suited for rapid chemical screening applications, with quantitative analysis requiring special quality control considerations. ?? 1991 American Chemical Society.

Journal of Agricultural and Food Chemistry↗
USGS2017

Using multi-date satellite imagery to monitor invasive grass species distribution in post-wildfire landscapes: An iterative, adaptable approach that employs open-source data and software

Among the most pressing concerns of land managers in post-wildfire landscapes are the establishment and spread of invasive species. Land managers need accurate maps of invasive species cover for targeted management post-disturbance that are easily transferable across space and time. In this study, we sought to develop an iterative, replicable methodology based on limited invasive species occurrence data, freely available remotely sensed data, and open source software to predict the distribution of Bromus tectorum (cheatgrass) in a post-wildfire landscape. We developed four species distribution models using eight spectral indices derived from five months of Landsat 8 Operational Land Imager (OLI) data in 2014. These months corresponded to both cheatgrass growing period and time of field data collection in the study area. The four models were improved using an iterative approach in which a threshold for cover was established, and all models had high sensitivity values when tested on an independent dataset. We also quantified the area at highest risk for invasion in future seasons given 2014 distribution, topographic covariates, and seed dispersal limitations. These models demonstrate the effectiveness of using derived multi-date spectral indices as proxies for species occurrence on the landscape, the importance of selecting thresholds for invasive species cover to evaluate ecological risk in species distribution models, and the applicability of Landsat 8 OLI and the Software for Assisted Habitat Modeling for targeted invasive species management.

International Journal of Applied Earth Observation↗
USGS2014

A data reconnaissance on the effect of suspended-sediment concentrations on dissolved-solids concentrations in rivers and tributaries in the Upper Colorado River Basin

The Colorado River is one of the most important sources of water in the western United States, supplying water to over 35 million people in the U.S. and 3 million people in Mexico. High dissolved-solids loading to the River and tributaries are derived primarily from geologic material deposited in inland seas in the mid-to-late Cretaceous Period, but this loading may be increased by human activities. High dissolved solids in the River causes substantial damages to users, primarily in reduced agricultural crop yields and corrosion. The Colorado River Basin Salinity Control Program was created to manage dissolved-solids loading to the River and has focused primarily on reducing irrigation-related loading from agricultural areas. This work presents a reconnaissance of existing data from sites in the Upper Colorado River Basin (UCRB) in order to highlight areas where suspended-sediment control measures may be useful in reducing dissolved-solids concentrations. Multiple linear regression was used on data from 164 sites in the UCRB to develop dissolved-solids models that include combinations of explanatory variables of suspended sediment, flow, and time. Results from the partial t -test, overall likelihood ratio, and partial likelihood ratio on the models were used to group the sites into categories of strong, moderate, weak, and no-evidence of a relation between suspended-sediment and dissolved-solids concentrations. Results show 68 sites have strong or moderate evidence of a relation, with drainage areas for many of these sites composed of a large percentage of clastic sedimentary rocks. These results could assist water managers in the region in directing field-scale evaluation of suspended-sediment control measures to reduce UCRB dissolved-solids loading.

Arizona, Colorado, New Mexico, Utah, Wyoming↗
USGS2006

Risk assessment test for lead bioaccessibility to waterfowl in mine-impacted soils

Due to variations in soil physicochemical properties, species physiology, and contaminant speciation, Pb toxicity is difficult to evaluate without conducting in vivo dose-response studies. Such tests, however, are expensive and time consuming, making them impractical to use in assessment and management of contaminated environments. One possible alternative is to develop a physiologically based extraction test (PBET) that can be used to measure relative bioaccessibility. We developed and correlated a PBET designed to measure the bioaccessibility of Pb to waterfowl (W-PBET) in mine-impacted soils located in the Coeur d'Alene River Basin, Idaho. The W-PBET was also used to evaluate the impact of P amendments on Pb bioavailability. The W-PBET results were correlated to waterfowl-tissue Pb levels from a mallard duck [Anas platyrhynchos (L.)] feeding study. The W-PBET Pb concentrations were significantly less in the P-amended soils than in the unamended soils. Results from this study show that the W-PBET can be used to assess relative changes in Pb bioaccessibility to waterfowl in these mine-impacted soils, and therefore will be a valuable test to help manage and remediate contaminated soils.

Journal of Environmental Quality↗
USGS1976

Exploration for porphyry copper deposits in Pakistan using digital processing of Landsat-1 data

Rock-type classification by digital-computer processing of Landsat-1 (formerly ERTS-1) multispectral scanner data has been used to select 23 prospecting targets in the Chagai District, Pakistan, 5 of which have proved to be large areas of hydrothermally altered porphyry containing pyrite. The known porphyry copper deposit at Saindak was used as a control area. Empirical maximum and minimum apparent reflectance limits were selected for each multispectral scanner band in each rock type classified, and a relatively unrefined classification table was prepared. Where the values for all four bands fitted within the limits designated for a particular class, a symbol for the presumed rock type was printed by the computer at the appropriate location; these symbols formed a classification map. Drainage channels, areas of mineralized quartz diorite, areas of pyrite-rich rock, and the approximate limit of propylitic alteration were very well delineated on the computer-generated map of the test area. The classification method was then used to evaluate 2,100 km 2 in the Mashki Chah region, east of the test area, and a partial check of the results was made in the field. The results of the experiment show that outcrops of hydrothermally altered and mineralized rock can be identified from Landsat-1 data under favorable conditions. The empirical method of digital computer classification of the multispectral scanner data was relatively unrefined and rapid. The five mineralized prospecting sites identified are in locations that I would not have selected as favorable on the basis of geologic knowledge or photogeologic interpretation at the time of the investigation.

Journal of Research of the U.S. Geological Survey↗
USGS2008

Landscape complexity and soil moisture variation in south Georgia, USA, for remote sensing applications

This research addressed the temporal and spatial variation of soil moisture (SM) in a heterogeneous landscape. The research objective was to investigate soil moisture variation in eight homogeneous 30 by 30 m plots, similar to the pixel size of a Landsat Thematic Mapper (TM) or Enhanced Thematic Mapper plus (ETM+) image. The plots were adjacent to eight stations of an in situ soil moisture network operated by the United States Department of Agriculture-Agriculture Research Service USDA-ARS in Tifton, GA. We also studied five adjacent agricultural fields to examine the effect of different landuses/land covers (LULC) (grass, orchard, peanuts, cotton and bare soil) on the temporal and spatial variation of soil moisture. Soil moisture field data were collected on eight occasions throughout 2005 and January 2006 to establish comparisons within and among eight homogeneous plots. Consistently throughout time, analysis of variance (ANOVA) showed high variation in the soil moisture behavior among the plots and high homogeneity in the soil moisture behavior within them. A precipitation analysis for the eight sampling dates throughout the year 2005 showed similar rainfall conditions for the eight study plots. Therefore, soil moisture variation among locations was explained by in situ local conditions. Temporal stability geostatistical analysis showed that soil moisture has high temporal stability within the small plots and that a single point reading can be used to monitor soil moisture status for the plot within a maximum 3% volume/volume (v/v) soil moisture variation. Similarly, t-statistic analysis showed that soil moisture status in the upper soil layer changes within 24 h. We found statistical differences in the soil moisture between the different LULC in the agricultural fields as well as statistical differences between these fields and the adjacent 30 by 30 m plots. From this analysis, it was demonstrated that spatial proximity is not enough to produce similar soil moisture, since t-test's among adjacent plots with different LULCs showed significant differences. These results confirm that a remote sensing approach that considers homogeneous LULC landscape fragments can be used to identify landscape units of similar soil moisture behavior under heterogeneous landscapes. In addition, the in situ USDA-ARS network will serve better in remote sensing studies in which sensors with fine spatial resolution are evaluated. This study is a first step towards identifying landscape units that can be monitored using the single point reading of the USDA-ARS stations network. ?? 2008 Elsevier B.V.

Journal of Hydrology↗
USGS2021

Development of aquaculture protocols and gonadal differentiation of red shiner

Developing detailed rearing methods and describing the onset of gonadal differentiation in Red Shiners Cyprinella lutrensis could facilitate the development of novel techniques to control or enhance populations, enable toxicology studies, and help construct bioassays. In this study, we develop and report aquaculture practices for Red Shiner that ensure consistent year-round production in laboratory settings and evaluate the timing of sexual differentiation via histological gonad examinations. Our methods resulted in a mean of 56.00% (SD = 8.98%) survival through the larval stages of development, and we obtained spawns from captive-reared Red Shiners 138 d posthatch. Red Shiners are gonochoristic, and both ovaries and testes differentiate directly from undifferentiated gonads. Ovaries begin to differentiate in females 45 d posthatch, while testes begin differentiating in males 105 d posthatch. This study provides in-depth protocols for the closed-cycle aquaculture of Red Shiners and describes the gonadal differentiation and development of both sexes.

Arizona↗
USGS1997

Irregularly shaped otoliths from saugers prevent back-calculation of length at previous ages in Wyoming

We collected otoliths from saugers Stizostedion canadense in Boysen Reservoir, Bighorn Reservoir, and the Bighorn River in Wyoming to evaluate age and growth. All otoliths in our samples (264 fish) were irregularly shaped, and the irregularities became more pronounced with increasing age of the fish. Age estimates with irregular otoliths were possible, but back-calculation of length at previous ages was not possible as a result of radically inconsistent lengths of radii. It should not be assumed that otoliths can be used for back calculation of length at age among all stocks of sauger. The assumption of regular otolith formation within a stock should be tested before obtaining samples of otoliths for age and growth assessment.

Wyoming↗
USGS2006

Use of the gamma distribution to represent monthly rainfall in Africa for drought monitoring applications

Evaluating a range of scenarios that accurately reflect precipitation variability is critical for water resource applications. Inputs to these applications can be provided using location- and interval-specific probability distributions. These distributions make it possible to estimate the likelihood of rainfall being within a specified range. In this paper, we demonstrate the feasibility of fitting cell-by-cell probability distributions to grids of monthly interpolated, continent-wide data. Future work will then detail applications of these grids to improved satellite-remote sensing of drought and interpretations of probabilistic climate outlook forum forecasts. The gamma distribution is well suited to these applications because it is fairly familiar to African scientists, and capable of representing a variety of distribution shapes. This study tests the goodness-of-fit using the Kolmogorov–Smirnov (KS) test, and compares these results against another distribution commonly used in rainfall events, the Weibull. The gamma distribution is suitable for roughly 98% of the locations over all months. The techniques and results presented in this study provide a foundation for use of the gamma distribution to generate drivers for various rain-related models. These models are used as decision support tools for the management of water and agricultural resources as well as food reserves by providing decision makers with ways to evaluate the likelihood of various rainfall accumulations and assess different scenarios in Africa.

International Journal of Climatology↗
USGS2019

Evaluation of temporally correlated noise in global navigation satellite system time series: Geodetic monument performance

Estimates of background noise of Global Positioning System‐derived time series of positions for 740 sites in the western United States are examined. These data consist of daily epochs of three components of displacements that are at least 9.75 years long within the interval between 2000 and 2018. We find that these time series have significant temporal correlations that could be represented as a combination of white, flicker, random‐walk, and band‐pass filtered noise. From this noise model, two other metrics are computed: the root‐mean‐square of seasonal noise, that is, the integrated power spectrum between 0.5 and 2 cycles per year, and the standard error in position rate for a 10‐year‐long time series. These two metrics are used to evaluate potential correlations with different geographic regions and with different methods of construction of monuments used to attach the Global Positioning System antenna to the Earth's surface. The sites with the lowest noise, both in terms of rate error and seasonal root‐mean‐square, are located in semiarid regions east of the rain shadow provided by the Cascade and Sierra Nevada mountain ranges. In addition, according to statistical rank tests, monuments known as drilled‐braced monuments perform 30% to 50% better than other monument types (buildings, boreholes, piers, etc.) in terms of having smaller rate errors and lower seasonal noise.

Journal of Geophysical Research B: Solid Earth↗
USGS2000

Observations of health indices used to monitor a tailwater trout fishery

Health of the population of rainbow trout Oncorhynchus mykiss in the San Juan River tailwater was monitored to determine the effects of potential crowding from a reduced winter flow test at Navajo Dam, northwestern New Mexico. A systematic necropsy-based health profile provided a rapid method to detect gross changes in the health of the fish population. The health assessment index (HAI) was calculated to quantify the necropsy system and allow statistical comparisons of data sets. Other suborganismic indices were selected to encompass a range of responses specific to the stress of environmental alterations: physiology assessment using total protein and percent muscle lipids, an immune assessment using serum lysozyme, and a cellular-based evaluation using histology. The HAI values showed no clear trend in fish health, although significant differences occurred among fish samples during the test. Significant declines in condition factors and percent muscle lipids throughout the study suggested a seasonal effect. Total protein and lysozyme levels were variable, showing no discernible patterns. Most histological observations appeared to be incidental during the study. Although there was no clear demonstrable effect of altered flow on fish health, this study revealed the sensitivities of various health indicators, which may help in designing future studies and supporting or interpreting results using these approaches.

New Mexico↗