Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Journal of Herpetology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 73 records · Page 4Linked to original sources
USGS2016

Detection rates of geckos in visual surveys: Turning confounding variables into useful knowledge

Transect surveys without some means of estimating detection probabilities generate population size indices prone to bias because survey conditions differ in time and space. Knowing what causes such bias can help guide the collection of relevant survey covariates, correct the survey data, anticipate situations where bias might be unacceptably large, and elucidate the ecology of target species. We used negative binomial regression to evaluate confounding variables for gecko (primarily Hemidactylus frenatus and Lepidodactylus lugubris) counts on 220-m-long transects surveyed at night, primarily for snakes, on 9,475 occasions. Searchers differed in gecko detection rates by up to a factor of six. The worst and best headlamps differed by a factor of at least two. Strong winds had a negative effect potentially as large as those of searchers or headlamps. More geckos were seen during wet weather conditions, but the effect size was small. Compared with a detection nadir during waxing gibbous (nearly full) moons above the horizon, we saw 28% more geckos during waning crescent moons below the horizon. A sine function suggested that we saw 24% more geckos at the end of the wet season than at the end of the dry season. Fluctuations on a longer timescale also were verified. Disturbingly, corrected data exhibited strong short-term fluctuations that covariates apparently failed to capture. Although some biases can be addressed with measured covariates, others will be difficult to eliminate as a significant source of error in longterm monitoring programs.

Andersen Air Force Base↗
USGS2015

Stability of detectability over 17 years at a single site and other lizard detection comparisons from Guam

To obtain quantitative information about population dynamics from counts of animals, the per capita detectabilities of each species must remain constant over the course of monitoring. We characterized lizard detection constancy for four species over 17 yr from a single site in northern Guam, a relatively benign situation because detection was relatively easy and we were able to hold constant the site, habitat type, species, season, and sampling method. We monitored two species of diurnal terrestrial skinks ( Carlia ailanpalai [Curious Skink], Emoia caeruleocauda [Pacific Bluetailed Skink]) using glueboards placed on the ground in the shade for 3 h on rainless mornings, yielding 10,286 skink captures. We additionally monitored two species of nocturnal arboreal geckos ( Hemidactylus frenatus [Common House Gecko]; Lepidodactylus lugubris [Mourning Gecko]) on the basis of 15,212 sightings. We compared these count samples to a series of complete censuses we conducted from four or more total removal plots (everything removed to mineral soil) totaling 400 m 2 (about 1% of study site) in each of the years 1995, 1999, and 2012, providing time-stamped quantification of detectability for each species. Unfortunately, the actual population trajectories taken by the four species were masked by unexplained variation in detectability. This observation of debilitating latent variability in lizard detectability under nearly ideal conditions undercuts our trust in population estimation techniques that fail to quantify venue-specific detectability, rely on pooled detection probability estimates, or assume that modulation in predefined environmental covariates suffices for estimating detectability.

Journal of Herpetology↗
USGS2016

Modeling habitat connectivity to inform reintroductions: a case study with the Chiricahua Leopard Frog

Managing species with intensive tools such as reintroduction may focus on single sites or entire landscapes. For vagile species, long-term persistence will require colonization and establishment in neighboring habitats. Therefore, both suitable colonization sites and suitable dispersal corridors between sites are required. Assessment of landscapes for both requirements can contribute to ranking and selection of reintroduction areas, thereby improving management success. Following eradication of invasive American Bullfrogs ( Lithobates catesbeianus ) from most of Buenos Aires National Wildlife Refuge (BANWR; Arizona, United States), larval Chiricahua Leopard Frogs ( Lithobates chiricahuensis ) from a private pond were reintroduced into three stock ponds. Populations became established at all three reintroduction sites followed by colonization of neighboring ponds in subsequent years. Our aim was to better understand colonization patterns by the federally threatened L. chiricahuensis which could help inform other reintroduction efforts. We assessed the influence of four landscape features on colonization. Using surveys from 2007 and information about the landscape, we developed a habitat connectivity model, based on electrical circuit theory, that identified potential dispersal corridors after explicitly accounting for imperfect detection of frogs. Landscape features provided little insight into why some sites were colonized and others were not, results that are likely because of the uniformity of the BANWR landscape. While corridor modeling may be effective in more-complex landscapes, our results suggest focusing on local habitat will be more useful at BANWR. We also illustrate that existing data, even when limited in spatial or temporal resolution, can provide information useful in formulating management actions.

Journal of Herpetology↗
USGS2016

Hibernal habitat selection by Wood Frogs ( Lithobates sylvaticus ) in a northern New England montane landscape

Poikilothermic species, such as amphibians, endure harsh winter conditions via freeze-tolerance or freeze-avoidance strategies. Freeze-tolerance requires a suite of complex, physiological mechanisms (e.g., cryoprotectant synthesis); however, behavioral strategies (e.g., hibernal habitat selection) may be used to regulate hibernaculum temperatures and promote overwintering survival. We investigated the hibernal ecology of the freeze-tolerant Wood Frog ( Lithobates sylvaticus ) in north-central Maine. Our objectives were to characterize the species hibernaculum microclimate (temperature, relative humidity), evaluate hibernal habitat selection, and describe the spatial arrangement of breeding, post-breeding, and hibernal habitats. We monitored 15 frogs during two winters (2011/12: N = 10; 2012/13: N = 5), measured hibernal habitat features at micro (2 m) and macro (10 m) spatial scales, and recorded microclimate hourly in three strata (hibernaculum, leaf litter, ambient air). We compared these data to that of 57 random locations with logistic regression models, Akaike Information Criterion, and Kolmogorov–Smirnov tests. Hibernaculum microclimate was significantly different and less variable than leaf litter, ambient air, and random location microclimate. Model averaging indicated that canopy cover (−), leaf litter depth (+), and number of logs and stumps (+; microhabitat only) were important predictors of Wood Frog hibernal habitat. These habitat features likely act to insulate hibernating frogs from extreme and variable air temperatures. For example, decreased canopy cover facilitates increased snowpack depth and earlier snowpack accumulation and melt. Altered winter temperature and precipitation patterns attributable to climate change may reduce snowpack insulation, facilitate greater temperature variation in the underlying hibernacula, and potentially compromise Wood Frog winter survival.

Maine↗
USGS2017

Climate-mediated competition in a high-elevation salamander community

The distribution of the federally endangered Shenandoah Salamander ( Plethodon shenandoah ) is presumed to be limited by competition with the Red-backed Salamander ( Plethodon cinereus ). In particular, the current distribution of P. shenandoah is understood to be restricted to warmer and drier habitats because of interspecific interactions. These habitats may be particularly sensitive to climate change, though the influence of competition may also be affected by temperature and relative humidity. We investigated the response of P. shenandoah to competition with P. cinereus under four climate scenarios in 3-dimensional mesocosms. The results suggest that, although climate change may alleviate competitive pressure from P. cinereus , warmer temperatures may also significantly influence the persistence of the species across its known range.

Journal of Herpetology↗
USGS2017

Estimating occurrence and detection probabilities for stream-breeding salamanders in the Gulf Coastal Plain

Large gaps exist in our knowledge of the ecology of stream-breeding plethodontid salamanders in the Gulf Coastal Plain. Data describing where these salamanders are likely to occur along environmental gradients, as well as their likelihood of detection, are important for the prevention and management of amphibian declines. We used presence/absence data from leaf litter bag surveys and a hierarchical Bayesian multispecies single-season occupancy model to estimate the occurrence of five species of plethodontids across reaches in headwater streams in the Gulf Coastal Plain. Average detection probabilities were high (range = 0.432–0.942) and unaffected by sampling covariates specific to the use of litter bags (i.e., bag submergence, sampling season, in-stream cover). Estimates of occurrence probabilities differed substantially between species (range = 0.092–0.703) and were influenced by the size of the upstream drainage area and by the maximum proportion of the reach that dried. The effects of these two factors were not equivalent across species. Our results demonstrate that hierarchical multispecies models successfully estimate occurrence parameters for both rare and common stream-breeding plethodontids. The resulting models clarify how species are distributed within stream networks, and they provide baseline values that will be useful in evaluating the conservation statuses of plethodontid species within lotic systems in the Gulf Coastal Plain.

Journal of Herpetology↗
USGS2017

Extinction debt as a driver of amphibian declines: An example with imperiled flatwoods salamanders

A comprehensive view of population declines and their underlying causes is necessary to reverse species loss. Historically, in many cases, a narrow view may have allowed species declines to continue, virtually undetected, for long periods of time (perhaps even decades). We suggest that extinction debt is likely responsible for numerous (perhaps most) amphibian declines and that this perspective should be incorporated into the structure of amphibian research and management. Extinction debt, originally proposed to explain changes in species richness following environmental disturbance, also may refer to the proportion of populations of an individual species that is expected to eventually be lost because of habitat change. A conservation framework to address extinction debt focuses research on threats at the individual, population, and metapopulation levels. This approach will help enhance, restore, and protect specific processes and habitats at the proper scale by directing management to the most vulnerable level and stage of a species. We illustrate this approach using Flatwoods Salamanders, Ambystoma cingulatum and Ambystoma bishopi , which occurred historically throughout the Coastal Plain of the southeastern United States but have experienced a greater than 85% loss of populations in recent years. Reversal of these losses is possible only if conservation and recovery efforts encompass individual, population, and metapopulation levels. We illustrate our framework by outlining actions that could be taken at each of these levels to help guide conservation and management of amphibians with complex life cycles and provide options for how to prioritize conservation actions in the face of logistical and budgetary shortfalls.

Journal of Herpetology↗
USGS2017

Response of anurans to wetland restoration on a midwestern agriculture landscape

Since the early 1990s, >5,000 ha of historic wetlands (and adjacent prairie) have been restored on the row-crop agricultural landscape of Winnebago County, Iowa, USA. From 2008–2011, we surveyed 22 of these sites for probabilities of occupancy and colonization by Boreal Chorus Frogs (BCF; Pseudacris maculata ), Northern Leopard Frogs (NLF; Lithobates pipiens ), and American Toads (AT; Anaxyrus americanus ). We used radio telemetry to measure patterns of movement and habitat use by 22 NLF and 54 AT and deployed biophysical models in available habitats to estimate their physiological costs. The BCF occupied 100% of restored wetlands; NLF and AT occupied 59–91% and 71–89%, respectively, varying according to annual weather conditions. The BCF colonized new sites within a year; NLF and AT required 3 and 2 yr, respectively. These differences were related to distances from the nearest established population and costs of intervening cover types, and were statistically related to the size and orientation of restored wetlands. The ranges of maximum straight-line distances moved by NLF and AT were 31–857 m and 42–2,932 m, respectively. Both NLF and AT selected wetlands and surrounding prairies, though NLF were nine times more likely to select wetland habitats than all others combined. About 24% of AT used row-crop fields extensively, but not until crops had grown sufficiently to reduce the physiological costs of these fields similar to that of prairies. Both BCF and AT navigated the dramatically altered row-crop landscape, but NLF depended more heavily on roadside ditches to find and colonize restored wetlands.

Iowa↗
USGS2017

Population trends, survival, and sampling methodologies for a population of Rana draytonii

Estimating population trends provides valuable information for resource managers, but monitoring programs face trade-offs between the quality and quantity of information gained and the number of sites surveyed. We compared the effectiveness of monitoring techniques for estimating population trends of Rana draytonii (California Red-legged Frog) at Point Reyes National Seashore, California, USA, over a 13-yr period. Our primary goals were to: 1) estimate trends for a focal pond at Point Reyes National Seashore, and 2) evaluate whether egg mass counts could reliably estimate an index of abundance relative to more-intensive capture–mark–recapture methods. Capture–mark–recapture (CMR) surveys of males indicated a stable population from 2005 to 2009, despite low annual apparent survival (26.3%). Egg mass counts from 2000 to 2012 indicated that despite some large fluctuations, the breeding female population was generally stable or increasing, with annual abundance varying between 26 and 130 individuals. Minor modifications to egg mass counts, such as marking egg masses, can allow estimation of egg mass detection probabilities necessary to convert counts to abundance estimates, even when closure of egg mass abundance cannot be assumed within a breeding season. High egg mass detection probabilities (mean per-survey detection probability = 0.98 [0.89–0.99]) indicate that egg mass surveys can be an efficient and reliable method for monitoring population trends of federally threatened R. draytonii . Combining egg mass surveys to estimate trends at many sites with CMR methods to evaluate factors affecting adult survival at focal populations is likely a profitable path forward to enhance understanding and conservation of R. draytonii .

California↗
USGS2018

Spatial and temporal variability in growth of giant gartersnakes: Plasticity, precipitation, and prey

The growth rate of reptiles is plastic and often varies among individuals, populations, and years in response to environmental conditions. For an imperiled species, the growth rate of individual animals is an important component of demographic models, and changes in individual growth rates might precede changes in abundance. We analyzed a long-term dataset on the growth of Giant Gartersnakes ( Thamnophis gigas ) to characterize spatial and temporal variability and evaluate potential environmental predictors of growth. We collected data on the growth in snout–vent length (SVL) of Giant Gartersnakes over 22 yr (1995–2016) from eight sites distributed throughout the Sacramento Valley of California, USA. The von Bertalanffy growth curves indicated male Giant Gartersnakes grew faster toward shorter, asymptotic SVL than did females. Nearly equal variability in growth was attributable to differences among years and among sites. From 2003–2016 we collected data on precipitation, temperature, and the abundance of fish and anuran prey at each site and used these variables as predictors in growth models of Giant Gartersnakes. Snake growth was positively related to the amount of precipitation that fell during the prior water year and the abundance of anurans at a site. Fish and frog abundance interacted to affect snake growth: at low abundances of one prey type, the other positively affected growth, but the slope of this relationship decreased as alternative prey abundance increased. Our results highlight the plasticity of growth in this threatened snake species, point to potential environmental drivers of growth, and provide valuable data for demographic modeling efforts.

California↗
USGS2019

Interactive effects of food supplementation and snake fungal disease on pregnant Pygmy Rattlesnakes and their offspring

In viviparous organisms, the ability to feed while pregnant may mitigate energetic trade-offs experienced during the reproductive process and enhance fecundity. However, anorexia during pregnancy has been reported in many crotaline snakes. The potential costs and benefits of feeding while pregnant are not completely described in the literature, and experimental studies have been conducted in a limited number of taxa, rendering our understanding of the forces that may underlie the evolution of anorexia in pregnant snakes incomplete. Here, we examine the impact of food supplementation during mid to late pregnancy on mothers and offspring in a viviparous crotaline snake species, the Pygmy Rattlesnake ( Sistrurus miliarius ). Specifically, we offered multiple large meals to mothers held in outdoor enclosures and measured a suite of maternal and offspring traits including maternal body condition, offspring length and mass, maternal disease state, and offspring foraging behaviors. We focused on interactions between feeding, clinical signs of snake fungal disease (SFD), and the presence of its causative agent, Ophidiomyces ophiodiicola , in mothers. Pregnant females fed readily when offered food, but feeding did not impact offspring traits. Food supplementation significantly increased maternal postparturient body condition, but also increased clinical signs of disease in mothers and led to a significantly higher reproductive failure rate in the treatment group, particularly in mothers afflicted with SFD. Our results suggest that food supplementation during pregnancy may disrupt the reproductive process in pregnant rattlesnakes, and that such disruption is particularly pronounced in mothers suffering from SFD.

Journal of Herpetology↗
USGS2020

Estimating detection probability for Burmese Pythons with few detections and zero recapture events

Detection has been a long-standing challenge to monitoring populations of cryptic herpetofauna, which often have detection probabilities that are closer to zero than one. Burmese Pythons (Python bivittatus =Python molurus bivittatus), a recent invader in the Greater Everglades Ecosystem of Florida, are cryptic snakes that have long periods of inactivity. In addition, management actions such as removal of every python encountered create challenges for estimating population size and quantifying effects of management using traditional statistical approaches. We used Bayesian analysis of data collected from 59 visual surveys (144 person-surveys) covering a total distance of 485.6 km (1185.1 person-km) and radiotelemetry to estimate detection probability for Burmese Pythons, estimates which can improve interpretation of encounter and removal data. We found that detection probability ranged from 0.0001 0.0146 depending on whether or not efforts units accounted for total human effort across multiple surveyors and statistical method used. Based on our surveys, detection probabilities for Burmese Pythons are therefore likely < 0.05, but factors such as the number of searchers or time of day may improve detection probability. Traditional capture-recapture or visual surveys are, however, unlikely to yield accurate information on Burmese Python population size or trends across time without cost-prohibitive effort. Consequently, novel method development to monitor or measure Burmese Python populations, including techniques better equipped to handle very low detection, is critically needed for informative and reliable inferences about population size or the management effects of python removal.

Journal of Herpetology↗
USGS2020

Factors facilitating co-occurrence at the Range Boundary of Shenandoah and Red-backed Salamanders

The transition from species in allopatry to sympatry, i.e., the co-occurrence zone of competing species, allows for investigation of forces structuring range limits and provides evidence of the evolutionary and population responses of competing species, including mechanisms facilitating co-occurrence (e.g., character displacement). The Shenandoah Salamander (Plethodon shenandoah), an endangered plethodontid, is limited to three mountaintops in Shenandoah National Park, Virginia, USA. This species’ distributional limits are attributed to competitive exclusion by the Red-backed Salamander (P. cinereus). Recent work showed range overlap between these species is greater than previously thought, requiring investigation of species morphology, behavior, and demographic measures in single-species and co-occurrence zones that might facilitate such overlap. We analyzed individual characteristics (e.g., life stage, size, color, and microhabitat-use) from two years of transect surveys to see if traits differed within and outside co-occurrence zones. Measures showed species- and zonal-specific differences, but we found limited support for character displacement. Both species were larger when co-occurringin the co-occurrence zone, indicating larger animals might better compete for resources or that symmetric competition restricts dispersal or recruitment processes at the co-occurrence zone. Microhabitat use also differed by species across transects, with Red-backed Salamanders using more rock microhabitats in the co-occurrence zone, potentially due to competition for microclimates that minimize physiological stress. The lack of strong evidence for morphologic, behavioral, or demographic differentiation in situ at the range edge suggests competition may be weaker than previously thought with other factors contributing to the range limits of Shenandoah Salamanders.

Journal of Herpetology↗
USGS2005

Juvenile frogs compensate for small metamorph size with terrestrial growth: Overcoming the effects of larval density and insecticide exposure

I reared four species of anurans ( Rana sphenocephala [Southern Leopard Frog], Rana blairi [Plains Leopard Frog], Rana clamitans [Green Frog], and Bufo woodhousii [Woodhouse's Toad]) for seven to 12 months in small, outdoor terrestrial enclosures (1 × 2 m) to examine the consequences of larval competition (via density) and contaminant exposure (via the insecticide carbaryl). I added six Rana clamitans , eight R ana sphenocephala , eight Rana blairi , and 10 Bufo woodhousii to terrestrial enclosures shortly after metamorphosis and recaptured them during the following spring. All anurans from low-density ponds were significantly larger than those from high-density ponds, but these size differences did not significantly affect survival to or size at spring emergence. However, R. sphenocephala , R. blairi , and R. clamitans that survived to spring had been larger at metamorphosis on average than those that did not survive; in contrast, B. woodhousii that survived the winter were smaller at metamorphosis on average than those that did not survive. Carbaryl exposure affected mass at metamorphosis of R. clamitans and B. woodhousii that were added to enclosures, but this difference disappeared or did not increase by spring emergence. Overall, exposure to carbaryl during the larval period did not have any apparent effects on survival or growth during the terrestrial phase. In my study, anurans were able to offset small size at metamorphosis with terrestrial growth, although there was a trend of reduced overwinter survival for ranid species that metamorphosed at a smaller size.

Journal of Herpetology↗
USGS2020

Influence of habitat structure and prey abundance on cccupancy and abundance of two anole ecomorphs, Anolis cristatellus and Anolis krugi, in secondary karst forests in northern Puerto Rico

Ecological studies strive to identify factors that explain patterns of species distribution and abundance. In lizards, competition and predation are major forces influencing distribution and abundance, but there is also increasing evidence pointing at the influence of habitat structure and prey abundance. Our work explored the latter further by quantifying the effects of vegetation and prey abundance on occupancy and abundance (i.e., estimated probability of detecting more than two individuals) of two sympatrically occurring species in the northern karst belt of Puerto Rico. We hypothesized that Anolis cristatellus would occur in trunk–ground substrates and Anolis krugi on grass–bush substrates according to their ecomorphological classification. We also hypothesized that prey abundance, a component of habitat quality, would have a positive and strong effect on occupancy and abundance. Anolis cristatellus exhibited high occupancy rates (>0.80), influenced by mid-story tree size. A. cristatellus abundance fluctuated over time, with highest probability of detecting two or more individuals in January–March and July–September when prey abundance transitioned from low to high levels. Occupancy of A. krugi was positively influenced by sapling density and prey abundance. Prey abundance exerted a stronger influence on occupancy, but its influence on abundance was negative and strong. Biological interactions and the type of understory substrates may explain the negative relationship. Our study supported predicted relationships between ecomorphology and habitat, but also showed that higher prey abundance may not always translate to higher local abundance. We shed light on these interactions, knowledge needed to advance anole conservation in the advent of land use and climate change.

Puerto Rico↗
USGS2020

Phylogeographic analysis of Mudpuppies (Necturus maculosus)

The geology of the Pleistocene, and particularly the Last Glacial Maximum approximately 26.5 ka, is a critical driver of species’ present-day distributions and levels of genetic diversity in northern regions. Using mitochondrial DNA sequence data, we tested several predictions relating to the postglacial recolonization of the northern United States and southern Canada by Mudpuppies (Necturus maculosus). Our analyses revealed a significant split between western and eastern lineages, with the divide corresponding to the location of the Mississippi River. Our data support the presence of one or more Mississippian glacial refugia, with subsequent expansion and diversification of a western cluster into the upper Midwest, and an eastern cluster into the eastern Great Lakes and New England. As predicted in cases of postglacial colonization, each of these clusters contains a single widespread and common haplotype, along with numerous low-frequency, closely related haplotypes. Given recent conservation concerns about amphibians in general, and Mudpuppies specifically, we discuss our results in light of species conservation. Knowledge of a species’ genetic diversity allows for informed management and facilitates decisions that preserve local adaptation and evolutionary potential.

Journal of Herpetology↗
USGS2022

Testing assumptions in the use of PIT tags to study movement of Plethodon salamanders

Studying the movements of organisms that live underground for at least a portion of their life history is challenging, given the state of current technology. Passive integrated transponders (PIT tags) provide a way to individually identify and, more recently, study the movement of smaller animals, including those that make subterranean movements. However, there are widespread assumptions of the use of PIT tags that remain problematic. We tested the effects of PIT-tag implantation on growth and survival, along with the effects of electromagnetic fields for reading PIT tags on behavior, of the smallest salamander that has been PIT-tagged: the Red-Backed Salamander. We found no effect of PIT tags on growth or survival. Using a mesocosm experiment, we also found that electromagnetic effects associated with reading PIT tags, had no effect on salamander behavior. Further, we describe a novel PIT antenna and soil mesocosm experimental arena for studying belowground movements of woodland salamanders. Collectively, these studies suggest that the use of PIT tags do not influence the growth, survival, or behavior of Red-Backed Salamanders. Given the challenges of studying salamanders that live underground and the impending changes in climate and landscapes, this research suggests that PIT tags remain a viable tool for studying the movement ecology of salamanders under global change.

Journal of Herpetology↗
USGS2022

Late season movement and habitat use by Oregon spotted frog (Rana pretiosa) in a large reservoir in Oregon, USA

Dam-created reservoirs are common landscape features that can provide habitat for amphibians, but their water level fluctuations and nonnative predators can differ markedly from more natural habitats. We compared fall movement and habitat use by the Oregon Spotted Frog ( Rana pretiosa ) in the reservoir pool with nearby river and pond habitats at Crane Prairie Reservoir in central Oregon, USA. Movement rate of frogs in the river and ponds declined as water temperature cooled. Reservoir frogs moved further than those in the river or ponds, and their movement rate increased as water temperature cooled. Most frog locations across all site types were in aquatic herbaceous vegetation. We did not find shifts in habitat between early and late fall. Increased movement and the lack of habitat shift in our reservoir frogs deeper into fall contrast with R. pretiosa in non-reservoir sites in this study and others. Consistent use of vegetation by reservoir frogs throughout the fall could indicate cover use in presence of fish predators. Our study provides additional detail on the range of habitats used by R. pretiosa in fall and suggests areas for further work to improve survival in constructed sites with abundant fish predators.

Oregon↗