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Nitrogen losses from dairy manure estimated through nitrogen mass balance and chemical markers

Ammonia is an important air and water pollutant, but the spatial variation in its concentrations presents technical difficulties in accurate determination of ammonia emissions from animal feeding operations. The objectives of this study were to investigate the relationship between ammonia volatilization and ?? 15 N of dairy manure and the feasibility of estimating ammonia losses from a dairy facility using chemical markers. In Exp. 1, the N/P ratio in manure decreased by 30% in 14 d as cumulative ammonia losses increased exponentially. Delta 15 N of manure increased throughout the course of the experiment and ?? 15 N of emitted ammonia increased (p < 0.001) quadratically from -31??? to -15 ???. The relationship between cumulative ammonia losses and ?? 15 N of manure was highly significant (p < 0.001; r 2 = 0.76). In Exp. 2, using a mass balance approach, approximately half of the N excreted by dairy cows (Bos taurus) could not be accounted for in 24 h. Using N/P and N/K ratios in fresh and 24-h manure, an estimated 0.55 and 0.34 (respectively) of the N excreted with feces and urine could not be accounted for. This study demonstrated that chemical markers (P, K) can be successfully used to estimate ammonia losses from cattle manure. The relationship between manure ?? 15 N and cumulative ammonia loss may also be useful for estimating ammonia losses. Although promising, the latter approach needs to be further studied and verified in various experimental conditions and in the field. Copyright ?? 2009 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality

Effect of sulfate and carbonate minerals on particle-size distributions in arid soils

Arid soils pose unique problems during measurement and interpretation of particle-size distributions (PSDs) because they often contain high concentrations of water-soluble salts. This study investigates the effects of sulfate and carbonate minerals on grain-size analysis by comparing analyses in water, in which the minerals dissolve, and isopropanol (IPA), in which they do not. The presence of gypsum, in particular, substantially affects particle-size analysis once the concentration of gypsum in the sample exceeds the mineral’s solubility threshold. For smaller concentrations particle-size results are unaffected. This is because at concentrations above the solubility threshold fine particles cement together or bind to coarser particles or aggregates already present in the sample, or soluble mineral coatings enlarge grains. Formation of discrete crystallites exacerbates the problem. When soluble minerals are dissolved the original, insoluble grains will become partly or entirely liberated. Thus, removing soluble minerals will result in an increase in measured fine particles. Distortion of particle-size analysis is larger for sulfate minerals than for carbonate minerals because of the much higher solubility in water of the former. When possible, arid soils should be analyzed using a liquid in which the mineral grains do not dissolve, such as IPA, because the results will more accurately reflect the PSD under most arid soil field conditions. This is especially important when interpreting soil and environmental processes affected by particle size.

Soil Science Society of America Journal

Literature review of the potential effects of formalin on nitrogen oxidation efficiency of the biofilters of recirculating aquaculture systems (RAS) for freshwater finfish

A comprehensive literature review was done for the effects of formalin on biofilter function in recirculating aquaculture systems (RAS) using these databases: ISI/Web of Knowledge, Scopus, and Pubmed. Inclusion and exclusion criteria were developed as the literature review was conducted. The initial search produced 5,682 potential citations. Once the literature search was complete, these 5,682 titles were screened for applicable papers using the inclusion and exclusion criteria. If the title contained any of the inclusion terms, it was retained. Titles of the remaining papers were then screened for exclusion terms. If the title contained one or more of the exclusion terms, it was eliminated from further consideration. This refined search produced 1,287 papers. After the initial screening, the remaining 1,287 papers underwent a second screening. Titles and abstracts (when available) were again read to verify that the topic of the paper was related to RAS. During the second screening, a second person verified that the papers proposed for elimination were not related to RAS. A combined reference list of the 443 remaining papers was created and submitted to the U.S. Geological Survey (USGS) Upper Midwest Environmental Sciences Center (UMESC) librarian to obtain the actual papers; electronic copies of those citations were obtained and reviewed. The UMESC librarian also would receive weekly updates from Scopus (a bibliographic database containing abstracts and citations for academic journal articles) using the search terms. Any resulting papers from those updates also were screened using the inclusion criteria, and any relevant papers were requested. From those, 82 were cited in the literature review. An additional 10 references were obtained from weekly updates or reference mining other sources and were incorporated into the final literature review.

Open-File Report

Literature review of the potential effects of hydrogen peroxide on nitrogen oxidation efficiency of the biofilters of recirculating aquaculture systems (RAS) for freshwater finfish

A comprehensive literature review was done for the effects of hydrogen peroxide (HP) on biofilter function in recirculating aquaculture systems (RAS) using these databases: ISI/Web of Knowledge, Scopus, and Pubmed. Inclusion and exclusion criteria were developed as the literature review was conducted. The initial search produced 5,748 potential citations. Once the literature search was complete, these 5,748 titles were screened for applicable papers using the inclusion and exclusion criteria. If the title contained any of the inclusion terms, it was retained. Titles of the remaining papers were then screened for exclusion terms. If the title contained one or more of the exclusion terms, it was eliminated from further consideration. This refined search produced 1,405 papers. After the initial screening, the remaining 1,405 papers underwent a second screening. Titles and abstracts (when available) were again read to verify that the topic of the paper was related to RAS. During the second screening, a second person verified that the papers proposed for elimination were not related to RAS. A combined reference list of the 512 remaining papers was created and submitted to the U.S. Geological Survey (USGS) Upper Midwest Environmental Sciences Center (UMESC) librarian in order to obtain the actual papers; electronic copies of those citations were obtained and reviewed. The UMESC librarian also received weekly updates from Scopus (a bibliographic database containing abstracts and citations for academic journal articles) using the search terms. Any resulting papers from those updates were screened using the inclusion criteria and relevant papers were requested. From those, 86 were cited in the literature review. An additional 11 papers from other search methods (e.g., mining references lists) also were obtained.

Open-File Report

Earth Stewardship: An initiative by the Ecological Society of America to foster engagement to sustain Planet Earth

The Ecological Society of America (ESA) has responded to the growing commitment among ecologists to make their science relevant to society through a series of concerted efforts, including the Sustainable Biosphere Initiative (1991), scientific assessment of ecosystem management (1996), ESA’s vision for the future (2003), Rapid Response Teams that respond to environmental crises (2005), and the Earth Stewardship Initiative (2009). During the past 25 years, ESA launched five new journals, largely reflecting the expansion of scholarship linking ecology with broader societal issues. The goal of the Earth Stewardship Initiative is to raise awareness and to explore ways for ecologists and other scientists to contribute more effectively to the sustainability of our planet. This has occurred through four approaches: (1) articulation of the stewardship concept in ESA publications and Website, (2) selection of meeting themes and symposia, (3) engagement of ESA sections in implementing the initiative, and (4) outreach beyond ecology through collaborations and demonstration projects. Collaborations include societies and groups of Earth and social scientists, practitioners and policy makers, religious and business leaders, federal agencies, and artists and writers. The Earth Stewardship Initiative is a work in progress, so next steps likely include continued nurturing of these emerging collaborations, advancing the development of sustainability and stewardship theory, improving communication of stewardship science, and identifying opportunities for scientists and civil society to take actions that move the Earth toward a more sustainable trajectory.

Book chapter

Rebuilding after collapse: evidence for long-term cohort dynamics in the native Hawaiian rain forest

Questions: Do long-term observations in permanent plots confirm the conceptual model of Metrosideros polymorpha cohort dynamics as postulated in 1987? Do regeneration patterns occur independently of substrate age, i.e. of direct volcanic disturbance impact? Location: The windward mountain slopes of the younger Mauna Loa and the older Mauna Kea volcanoes (island of Hawaii, USA). Methods: After widespread forest decline (dieback), permanent plots were established in 1976 in 13 dieback and 13 non-dieback patches to monitor the population structure of M. polymorpha at ca. 5-yr intervals. Within each plot of 20 × 20 m, all trees with DBH >2.5 cm were individually tagged, measured and tree vigour assessed; regeneration was quantified in 16 systematically placed subplots of 3 × 5 m. Data collected in the subplots included the total number of M. polymorpha seedlings and saplings (five stem height classes). Here we analyse monitoring data from six time steps from 1976 to 2003 using repeated measures ANOVA to test specific predictions derived from the 1987 conceptual model. Results: Regeneration was significantly different between dieback and non-dieback plots. In dieback plots, the collapse in the 1970s was followed by a ‘sapling wave’ that by 2003 led to new cohort stands of M. polymorpha. In non-dieback stands, seedling emergence did not result in sapling waves over the same period. Instead, a ‘sapling gap’ (i.e. very few or no M. polymorpha saplings) prevailed as typical for mature stands. Canopy dieback in 1976, degree of recovery by 2003 and the number of living trees in 2003 were unrelated to substrate age. Conclusions: Population development of M. polymorpha supports the cohort dynamics model, which predicts rebuilding of the forest with the same canopy species after dieback. The lack of association with substrate age suggests that the long-term maintenance of cohort structure in M. polymorpha does not depend on volcanic disturbance but may be related to other environmental mechanisms, such as climate anomalies.

Hawai'i

Comparative study of transport processes of nitrogen, phosphorus, and herbicides to streams in five agricultural basins, USA

Agricultural chemical transport to surface water and the linkage to other hydrological compartments, principally ground water, was investigated at five watersheds in semiarid to humid climatic settings. Chemical transport was affected by storm water runoff, soil drainage, irrigation, and how streams were linked to shallow ground water systems. Irrigation practices and timing of chemical use greatly affected nutrient and pesticide transport in the semiarid basins. Irrigation with imported water tended to increase ground water and chemical transport, whereas the use of locally pumped irrigation water may eliminate connections between streams and ground water, resulting in lower annual loads. Drainage pathways in humid environments are important because the loads may be transported in tile drains, or through varying combinations of ground water discharge, and overland flow. In most cases, overland flow contributed the greatest loads, but a significant portion of the annual load of nitrate and some pesticide degradates can be transported under base-flow conditions. The highest basin yields for nitrate were measured in a semiarid irrigated system that used imported water and in a stream dominated by tile drainage in a humid environment. Pesticide loads, as a percent of actual use (LAPU), showed the effects of climate and geohydrologic conditions. The LAPU values in the semiarid study basin in Washington were generally low because most of the load was transported in ground water discharge to the stream. When herbicides are applied during the rainy season in a semiarid setting, such as simazine in the California basin, LAPU values are similar to those in the Midwest basins. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality

Predicting fish species richness and habitat relationships using Bayesian hierarchical multispecies occupancy models

Understanding how stream fishes respond to changes in habitat availability is complicated by low occurrence rates of many species, which in turn reduces the ability to quantify species–habitat relationships and account for imperfect detection in estimates of species richness. Multispecies occupancy models have been used sparingly in the analysis of fisheries data, but address the aforementioned deficiencies by allowing information to be shared among ecologically similar species, thereby enabling species–habitat relationships to be estimated for entire fish communities, including rare species. Here, we highlight the utility of hierarchical multispecies occupancy models for the analysis of fish community data and demonstrate the modeling framework on a stream fish community dataset collected in the Delaware Water Gap National Recreation Area, USA. In particular, we demonstrate the ability of the modeling framework to make inferences at the species-, guild-, and community-levels, thereby making it a powerful tool for understanding and predicting how environmental variables influence species occupancy probabilities and structure fish assemblages.

New York New Jersey, Pennsylvania

What can trees tell us about the air we breathe at home?

The air in houses can be affected by bad stuff, called contaminants. Sometimes harmful chemicals enter the air in buildings from nearby contaminated soil and groundwater through cracks or gaps in the foundation – a process known as vapor intrusion. This poses some risk to our health because we spend so much of our time indoors. Currently it’s difficult and expensive to figure out if vapor intrusion is happening. That’s why we wanted to see if trees can serve as indicators for vapor intrusion. We collected samples from 109 trees in a contaminated area in a Nebraska town and analyzed them for tetrachloroethene (PCE), a chemical used mostly as a cleaner and to make other chemicals. When comparing our results with the data the U.S. Environmental Protection Agency (EPA) had collected, we found that trees are good indicators of vapor intrusion.

Science Journal for Kids

Clarity versus complexity: land-use modeling as a practical tool for decision-makers

The last decade has seen a remarkable increase in the number of modeling tools available to examine future land-use and land-cover (LULC) change. Integrated modeling frameworks, agent-based models, cellular automata approaches, and other modeling techniques have substantially improved the representation of complex LULC systems, with each method using a different strategy to address complexity. However, despite the development of new and better modeling tools, the use of these tools is limited for actual planning, decision-making, or policy-making purposes. LULC modelers have become very adept at creating tools for modeling LULC change, but complicated models and lack of transparency limit their utility for decision-makers. The complicated nature of many LULC models also makes it impractical or even impossible to perform a rigorous analysis of modeling uncertainty. This paper provides a review of land-cover modeling approaches and the issues causes by the complicated nature of models, and provides suggestions to facilitate the increased use of LULC models by decision-makers and other stakeholders. The utility of LULC models themselves can be improved by 1) providing model code and documentation, 2) through the use of scenario frameworks to frame overall uncertainties, 3) improving methods for generalizing key LULC processes most important to stakeholders, and 4) adopting more rigorous standards for validating models and quantifying uncertainty. Communication with decision-makers and other stakeholders can be improved by increasing stakeholder participation in all stages of the modeling process, increasing the transparency of model structure and uncertainties, and developing user-friendly decision-support systems to bridge the link between LULC science and policy. By considering these options, LULC science will be better positioned to support decision-makers and increase real-world application of LULC modeling results.

Journal of Environmental Management

Long-term assessment of ichthyoplankton in a large North American river system reveals changes in fish community dynamics

Larval fishes are sensitive to abiotic conditions and provide a direct measure of spawning success. The St. Clair – Detroit River System, a Laurentian Great Lakes connecting channel with a history of environmental degradation, has undergone improvements in habitat and water quality since the 1970s. We compared 2006–2015 ichthyoplankton community data with those collected prior to remediation efforts (1977–1978) to identify patterns in spatial and temporal variability. Both assemblages exhibited a predictable phenology, with taxa from the subfamily Coregoninae dominant in early spring followed by families Osmeridae, Percidae, and Moronidae (May–June) and Cyprinidae and Clupeidae (June–August). While higher densities of larval fish were found in the Detroit River, greater taxa richness and Shannon diversity were observed in the St. Clair River. System wide, 14 new taxa were observed in the 2000s study period. In addition, relative densities of two nonnative species, alewife ( Alosa pseudoharengus ) and rainbow smelt ( Osmerus mordax ), declined since the 1970s. Increased larval fish richness and decreased densities of nonnative taxa in the 2000s are consistent with improvements to environmental conditions.

Michigan, Ontario

Enabling science support for better decision-making when responding to chemical spills

Chemical spills and accidents contaminate the environment and disrupt societies and economies around the globe. In the United States there were approximately 172,000 chemical spills that affected US waterbodies from 2004 to 2014. More than 8000 of these spills involved non–petroleum-related chemicals. Traditional emergency responses or incident command structures (ICSs) that respond to chemical spills require coordinated efforts by predominantly government personnel from multiple disciplines, including disaster management, public health, and environmental protection. However, the requirements of emergency response teams for science support might not be met within the traditional ICS. We describe the US ICS as an example of emergency-response approaches to chemical spills and provide examples in which external scientific support from research personnel benefitted the ICS emergency response, focusing primarily on nonpetroleum chemical spills. We then propose immediate, near-term, and long-term activities to support the response to chemical spills, focusing on nonpetroleum chemical spills. Further, we call for science support for spill prevention and near-term spill-incident response and identify longer-term research needs. The development of a formal mechanism for external science support of ICS from governmental and nongovernmental scientists would benefit rapid responders, advance incident- and crisis-response science, and aid society in coping with and recovering from chemical spills.

Journal of Environmental Quality

Urban growth and landscape connectivity threats assessment at Saguaro National Park, Arizona, USA

Urban and exurban expansion results in habitat and biodiversity loss globally. We hypothesize that a coupled-model approach could connect urban planning for future cities with landscape ecology to consider wildland habitat connectivity. Our work combines urban growth simulations with models of wildlife corridors to examine how species will be impacted by development to test this hypothesis. We leverage a land use change model (SLEUTH) with structural and functional landscape-connectivity modeling techniques to ascertain the spatial extent and locations of connectivity related threats to a national park in southern Arizona, USA, and describe how protected areas might be impacted by urban expansion. Results of projected growth significantly altered structural connectivity (80%) when compared to current (baseline) corridor conditions. Moreover, projected growth impacted functional connectivity differently amongst species, indicating resilience of some species and near-complete displacement of others. We propose that implementing a geospatial-design-based model will allow for a better understanding of the impacts management decisions have on wildlife populations. The application provides the potential to understand both human and environmental impacts of land-system dynamics, critical for long-term sustainability.

Arizona

Incorporating temporal heterogeneity in environmental conditions into a somatic growth model

Evaluating environmental effects on fish growth can be challenging because environmental conditions may vary at relatively fine temporal scales compared to sampling occasions. Here we develop a Bayesian state-space growth model to evaluate effects of monthly environmental data on growth of fish that are observed less frequently (e.g., from mark-recapture data where time between captures can range from months to years). We assess effects of temperature, turbidity duration, food availability, flow variability, and trout abundance on subadult humpback chub (Gila cypha) growth in two rivers, the Colorado River (CR) and the Little Colorado River (LCR), and we use out-of-sample prediction to rank competing models. Environmental covariates explained a high proportion of the variation in growth in both rivers; however, the best growth models were river-specific and included either positive temperature and turbidity duration effects (CR) or positive temperature and food availability effects (LCR). Our approach to analyzing environmental controls on growth should be applicable in other systems where environmental data vary over relatively short time scales compared to animal observations.

Canadian Journal of Fisheries and Aquatic Sciences

Geographic distribution of the Puerto Rican Harlequin Butterfly (Atlantea tulita): An ensemble modeling approach

Species distribution models have become increasingly important tools for species conservation. This modeling approach can help guide conservation practitioners and inform decisions. Distribution models are particularly relevant for rare species, whose habitat associations are often not well understood. Using species occurrence data, and a variety of predictor variables, we developed three individual distribution models and a weighted ensemble model for the Puerto Rican harlequin butterfly ( Atlantea tulita ). The ensemble model had the greatest accuracy (AUC = 0.92). Further, the ensemble model indicated 7.1% of the main island of Puerto Rico encompassed suitable habitat for the harlequin butterfly. However, only 0.5% was classified as including the greatest suitability. Using an ensemble modeling approach to delineate areas of the island with suitable environmental conditions may improve habitat conservation efforts for the species.

Caribbean Journal of Science

Chronic and episodic acidification of Adirondack streams from acid rain in 2003-2005

Limited information is available on streams in the Adirondack region of New York, although streams are more prone to acidification than the more studied Adirondack lakes. A stream assessment was therefore undertaken in the Oswegatchie and Black River drainages; an area of 4585 km2 in the western part of the Adirondack region. Acidification was evaluated with the newly developed base-cation surplus (BCS) and the conventional acid-neutralizing capacity by Gran titration (ANCG). During the survey when stream water was most acidic (March 2004), 105 of 188 streams (56%) were acidified based on the criterion of BCS < 0 ??eq L-1, whereas 29% were acidified based on an ANCG value < 0 ??eq L-1. During the survey when stream water was least acidic (August 2003), 15 of 129 streams (12%) were acidified based on the criterion of BCS < 0 ??eq L-1, whereas 5% were acidified based on ANCG value < 0 ??eq L -1. The contribution of acidic deposition to stream acidification was greater than that of strongly acidic organic acids in each of the surveys by factors ranging from approximately 2 to 5, but was greatest during spring snowmelt and least during elevated base flow in August. During snowmelt, the percentage attributable to acidic deposition was 81%, whereas during the October 2003 survey, when dissolved organic carbon (DOC) concentrations were highest, this percentage was 66%. The total length of stream reaches estimated to be prone to acidification was 718 km out of a total of 1237 km of stream reaches that were assessed. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality

Cohort strength and body size in co-occurring salmonids in a small stream network: Variation in space and time

Trout and salmon commonly coexist in stream networks. Exploring similarities and differences among species can help explain coexistence and invasive ability. Here, we describe spatial distribution, cohort strengths and size-at-age of three co-occurring species in a small stream network. Spatial distributions varied dramatically among species; native brook trout occupied all stream reaches, naturalized brown trout were found in the mainstem and lower portions of tributaries and fry-stocked Atlantic salmon were limited to the mainstem. Size-at-age also differed among species, Atlantic salmon were consistently the smallest, brook trout were intermediate in size and brown trout were the largest. Despite size differences, mean lengths of brook trout and brown trout were highly correlated among years. Cohort strengths varied considerably across years but were also highly correlated for the two trout species, suggesting strong environmental control on cohort strength and a reduced role for species interactions. At low densities, we observed strong negative effects of density on body sizes and weaker effects otherwise. Overall, these results suggest differences in spatial distribution combined with similarities in response to environmental variation contribute to species coexistence in this small steam network.

Canadian Journal of Fisheries and Aquatic Sciences