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Assessing contaminants of emerging concern in the Great Lakes Ecosystem: A decade of method development and practical application

Assessing the ecological risk of contaminants in the field typically involves consideration of a complex mixture of compounds which may or may not be detected via instrumental analyses. Further, there are insufficient data to predict the potential biological effects of many detected compounds, leading to their being characterized as contaminants of emerging concern (CECs). Over the past several years, advances in chemistry, toxicology, and bioinformatics have resulted in a variety of concepts and tools that can enhance the pragmatic assessment of the ecological risk of CECs. The present Focus article describes a 10+- year multiagency effort supported through the U.S. Great Lakes Restoration Initiative to assess the occurrence and implications of CECs in the North American Great Lakes. State-of-the-science methods and models were used to evaluate more than 700 sites in about approximately 200 tributaries across lakes Ontario, Erie, Huron, Michigan, and Superior, sometimes on multiple occasions. Studies featured measurement of up to 500 different target analytes in different environmental matrices, coupled with evaluation of biological effects in resident species, animals from in situ and laboratory exposures, and in vitro systems. Experimental taxa included birds, fish, and a variety of invertebrates, and measured endpoints ranged from molecular to apical responses. Data were integrated and evaluated using a diversity of curated knowledgebases and models with the goal of producing actionable insights for risk assessors and managers charged with evaluating and mitigating the effects of CECs in the Great Lakes. This overview is based on research and data captured in approximately about 90 peer-reviewed journal articles and reports, including approximately about 30 appearing in a virtual issue comprised of highlighted papers published in Environmental Toxicology and Chemistry or Integrated Environmental Assessment and Management . Environ Toxicol Chem 2023;42:2506–2518. © 2023 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Environmental Toxicology and Chemistry↗

The role of remote sensing observations and models in hydrology: The science of evapotranspiration

Over 15 years ago, Morton (1994) summarized the state of evapotranspiration (ET) research pessimistically: ‘There have been few significant advances in our knowledge of evaporation on an environmental scale over the past four decades, a state of affairs linked to the current sterility of hydrology and related environmental sciences. Furthermore, almost none of the advances have been used successfully in practice.’ He did not foresee the rapid progress in the ensuing years. These advances can be attributed largely to three convergent themes: 1) technical innovation; 2) synergy between disciplines; and 3) expressed need. The papers in this special issue address all of these three themes on remote sensing methods for ET estimation.

Hydrological Processes↗

Amphibian conservation in the Anthropocene

Research is necessary to identify patterns in nature, to understand how a system functions, and to make predictions about the future state of an ecosystem. Applied research in conservation biology can identify effective strategies to maintain biodiversity, though many papers end with the conclusion that more research is needed. However, more research does not necessarily lead to solutions. We use the ongoing global decline of amphibians as a salient example to highlight limitations in current conservation research, and to focus on finding solutions which are directly relevant for conservation. While research has been conducted since declines were first detected in the 1990s, outside a few specific examples, little progress in conservation has been achieved. We suggest that the case of amphibian declines is relevant to conservation science in general, as the current paradigm for conservation is that management is planned after research is completed; research and management are not effectively (and not directly) connected. This disconnect illustrates the knowledge-action divide which has been identified as a serious deficiency in conservation. Accordingly, we use this introductory paper to the Special Issue (Amphibian conservation in the Anthropocene: Progress and challenges) to describe amphibians as a conservation dilemma, and to make the case for a different, more pragmatic, and more solutions-focused view of conservation research.

Kansas, Oklahoma↗

Overview of avian toxicity studies for the Deepwater Horizon Natural Resource Damage Assessment

The Oil Pollution Act of 1990 establishes liability for injuries to natural resources because of the release or threat of release of oil. Assessment of injury to natural resources resulting from an oil spill and development and implementation of a plan for the restoration, rehabilitation, replacement or acquisition of natural resources to compensate for those injuries is accomplished through the Natural Resource Damage Assessment (NRDA) process. The NRDA process began within a week of the Deepwater Horizon oil spill, which occurred on April 20, 2010. During the spill, more than 8500 dead and impaired birds representing at least 93 avian species were collected. In addition, there were more than 3500 birds observed to be visibly oiled. While information in the literature at the time helped to identify some of the effects of oil on birds, it was not sufficient to fully characterize the nature and extent of the injuries to the thousands of live oiled birds, or to quantify those injuries in terms of effects on bird viability. As a result, the US Fish and Wildlife Service proposed various assessment activities to inform NRDA injury determination and quantification analyses associated with the Deepwater Horizon oil spill, including avian toxicity studies. The goal of these studies was to evaluate the effects of oral exposure to 1–20 ml of artificially weathered Mississippi Canyon 252 oil kg bw -1 day -1 from one to 28 days or one to five applications of oil to 20% of the bird's surface area. It was thought that these exposure levels would not result in immediate or short-term mortality but might result in physiological effects that ultimately could affect avian survival, reproduction and health. These studies included oral dosing studies, an external dosing study, metabolic and flight performance studies and field-based flight studies. Results of these studies indicated changes in hematologic endpoints including formation of Heinz bodies and changes in cell counts. There were also effects on multiple organ systems, cardiac function and oxidative status. External oiling affected flight patterns and time spent during flight tasks indicating that migration may be affected by short-term repeated exposure to oil. Feather damage also resulted in increased heat loss and energetic demands. The papers in this special issue indicate that the combined effects of oil toxicity and feather effects in avian species, even in the case of relatively light oiling, can significantly affect the overall health of birds.

Ecotoxicology and Environmental Safety↗

Preface: The lunar reconnaissance orbiter

When the call for papers for a special issue of Icarus devoted to analysis of data from the Lunar Reconnaissance Orbiter mission was announced in March 2015 we envisioned a single issue with only a possibility of a second. We certainly were gratified by the response from within and outside the LRO instrument teams such that we were compelled to publish this the third and final volume. It is a testament to the Moon as object that enhances our understanding of the history of the Earth-Moon system, the Solar System as a whole, and geologic processes that take place on the Moon and other atmosphere-less bodies. Many of the publications included lead authors outside the LRO team of co-investigators, using data from multiple instruments from LRO and other recent missions.

Icarus↗

Large-scale coastal change in the Columbia River littoral cell: an overview

This overview introduces large-scale coastal change in the Columbia River littoral cell (CRLC). Covering 165 km of the southwest Washington and northwest Oregon coasts, the littoral cell is made up of wide low-sloping dissipative beaches, broad coastal dunes and barrier plains, three large estuaries, and is bounded by rocky headlands. The beaches and inner shelf are composed of fine-grained sand from the Columbia River and are exposed to a high-energy winter wave climate. Throughout the Holocene, the CRLC has undergone large fluctuations in shoreline change trends, responding to a variety of coastal change drivers, including changing rates of sea-level rise, infrequent, yet catastrophic, co-seismic subsidence events, a large regional sediment supply, inter-annual climatic fluctuations (El Niño cycles), seasonally varying wave climate, and numerous anthropogenic influences. Human influences on the CRLC include construction of over 200 dams in the Columbia River drainage basin, dredging of navigation channels removing sand to upland sites and offshore deep-water sites, and construction of large inlet jetties at the entrances to the Columbia River and Grays Harbor. The construction of these massive entrance jetties at the end of the 19th century has been the dominant driver of coastal change through most of the littoral cell over the last hundred years. Presently, some beaches in the littoral cell are eroding in response to nearshore sediment deficits resulting from a) ebb-jets of the confined entrances pushing the previously large, shallow ebb-tidal deltas offshore into deeper water, and b) waves dispersing the nearshore delta flanks initially onshore and then alongshore away from the jetties. This overview describes 1) the motivation for developing a system-wide understanding of sediment dynamics in the littoral cell at multiple time and space scales, 2) the formation and approach of the Southwest Washington Coastal Erosion Study, and 3) an introduction to the papers in this special issue.

Washington;Oregon↗

Sediment transport in the San Francisco Bay Coastal System: An overview

The papers in this special issue feature state-of-the-art approaches to understanding the physical processes related to sediment transport and geomorphology of complex coastal-estuarine systems. Here we focus on the San Francisco Bay Coastal System, extending from the lower San Joaquin-Sacramento Delta, through the Bay, and along the adjacent outer Pacific Coast. San Francisco Bay is an urbanized estuary that is impacted by numerous anthropogenic activities common to many large estuaries, including a mining legacy, channel dredging, aggregate mining, reservoirs, freshwater diversion, watershed modifications, urban run-off, ship traffic, exotic species introductions, land reclamation, and wetland restoration. The Golden Gate strait is the sole inlet connecting the Bay to the Pacific Ocean, and serves as the conduit for a tidal flow of ~ 8 x 109 m 3 /day, in addition to the transport of mud, sand, biogenic material, nutrients, and pollutants. Despite this physical, biological and chemical connection, resource management and prior research have often treated the Delta, Bay and adjacent ocean as separate entities, compartmentalized by artificial geographic or political boundaries. The body of work herein presents a comprehensive analysis of system-wide behavior, extending a rich heritage of sediment transport research that dates back to the groundbreaking hydraulic mining-impact research of G.K. Gilbert in the early 20th century.

California↗

Sub-tidal benthic habitats of central San Francisco Bay and offshore Golden Gate area: A review

Deep-water potential estuarine and marine benthic habitat types were defined from a variety of new and interpreted data sets in central San Francisco Bay and offshore Golden Gate area including multibeam echosounder (MBES), side-scan sonar and bottom grab samples. Potential estuarine benthic habitats identified for the first time range from hard bedrock outcrops on island and mainland flanks and some Bay floor regions, to soft, very dynamic bedforms consisting of sediment waves and ripples. Soft sediment ranges from mud and sand to bimodal (two or more grain sizes) sediment of gravel, pebbles, and cobbles. In addition, considerable anthropogenic features (i.e., pipelines, bridge abutments, dredged channels, dump sites) were distinguished. Of the 52 potential benthic habitat types mapped (compressed to 14 types for this paper), 24 were of un-consolidated sediment with five of these comprised of dynamic bedforms or sediment waves and dunes, five of mixed (soft over hard) substrate type, six of hard substrate or rock outcrop, 13 of anthropogenically disturbed areas and four hard anthropogenic features. Rock outcrops and rubble are considered the primary habitat type for rockfish ( Sebastes spp. ), lingcod ( Ophiodon elongatus ) and in shallow water for herring ( Clupea pallasii ) spawning. Dynamic bedforms such as sand waves are considered potential foraging habitat for juvenile lingcod, may be sub-tidal habitat for the Pacific sand lance ( Ammodytes hexapterus ) forage fish, and possibly resting habitat for migratory fishes such as sturgeon ( Acipenser medirostris ). The potential marine benthic habitats identified in San Francisco Bay are not unlike those found in other estuaries around the world and this study should contribute significant information that will be of interest to scientists, managers and fishers investigating and utilizing bay and estuarine resources. As described in the many papers of this special issue, the understanding of the interrelationship of geology and ecology is critical to the identification of essential habitats and the sustainability of a healthy ecosystem.

California↗

SPT-based probabilistic and deterministic assessment of seismic soil liquefaction triggering hazard

This study serves as an update to the Cetin et al. (2000, 2004) [1,2] databases and presents new liquefaction triggering curves. Compared with these studies from over a decade ago, the resulting new Standard Penetration Test (SPT)-based triggering curves have shifted to slightly higher CSR-levels for a given N1,60,CS for values of N1,60,CS greater than 15 blows/ft, but the correlation curves remain essentially unchanged at N1,60,CS values less than 15 blows/ft. This paper addresses the improved database and the methodologies used for the development of the updated triggering relationships. A companion paper addresses the principal issues that cause differences among three widely used SPT-based liquefaction triggering relationships.

Soil Dynamics and Earthquake Engineering↗

Processes of lithosphere evolution: New evidence on the structure of the continental crust and uppermost mantle

We discuss the structure of the continental lithosphere, its physical properties, and the mechanisms that formed and modified it since the early Archean. The structure of the upper mantle and the crust is derived primarily from global and regional seismic tomography studies of Eurasia and from global and regional data on seismic anisotropy. These data as documented in the papers of this special issue of Tectonophysics are used to illustrate the role of different tectonic processes in the lithospheric evolution since Archean to present. These include, but are not limited to, cratonization, terrane accretion and collision, continental rifting (both passive and active), subduction, and lithospheric basal erosion due to a relative motion of cratonic keels and the convective mantle.

Tectonophysics↗

Interspecific interactions, habitat use, and management of double-crested cormorants ( Phalacrocorax auritus ) in the Laurentian Great Lakes: An introduction

The collection of seven papers in this journal issue represents a subset of the presentations from a special session at the 44th Annual Conference of the International Association for Great Lakes Research. The session, 'Management of the Double-crested Cormorant in the Laurentian Great Lakes Region,' was held on 12 June 2001 and contained 18 presentations. Topics included cormorant-fish interactions, effects of cormorant nesting on colonies of other waterbirds, cormorant population dynamics, habitat use by foraging cormorants, evaluation of management techniques, and policy and conflict assessment on cormorant-related issues. The collection is organized into four basic topics: management of populations, effects of cormorants on other colonial waterbirds, foraging habitats of cormorants, and effects of cormorants on fisheries. A primary objective of this collection is to provide information and useful tools for managing cormorants in the Great Lakes.

Journal of Great Lakes Research↗

Flood risk awareness during the 2011 floods in the central United States: showcasing the importance of hydrologic data and interagency collaboration

Floods have long had a major impact on society and the environment, evidenced by the more than 1,500 federal disaster declarations since 1952 that were associated with flooding. Calendar year 2011 was an epic year for floods in the United States, from the flooding on the Red River of the North in late spring to the Ohio, Mississippi, and Missouri River basin floods in the spring and summer to the flooding caused by Hurricane Irene along the eastern seaboard in August. As a society, we continually seek to reduce flood impacts, with these efforts loosely grouped into two categories: mitigation and risk awareness. Mitigation involves such activities as flood assessment, flood control implementation, and regulatory activities such as storm water and floodplain ordinances. Risk awareness ranges from issuance of flood forecasts and warnings to education of lay audiences about the uncertainties inherent in assessing flood probability and risk. This paper concentrates on the issue of flood risk awareness, specifically the importance of hydrologic data and good interagency communication in providing accurate and timely flood forecasts to maximize risk awareness. The 2011 floods in the central United States provide a case study of the importance of hydrologic data and the value of proper, timely, and organized communication and collaboration around the collection and dissemination of that hydrologic data in enhancing the effectiveness of flood forecasting and flood risk awareness.

Leadership and Management in Engineering↗

Unsteady, nonuniform landslide motion: 1. Theoretical dynamics and the steady datum state

Unsteady, nonuniform motion of persistently active landslides is a process of widespread importance. A general, three-dimensional theory aimed at elucidating this process is developed from physical principles and field measurements of landslide behavior. The theory employs a versatile constitutive model that represents landslides as deformable bodies composed of frictional, nonlinear viscoplastic material. The three-dimensional theory is reduced to a mathematically tracTable form by defining an ideal landslide datum state that consists of steady, unidirectional shear flow driven by ground-water seepage and gravitational forces. Solution of the datum-state equation of motion yields vertical landslide velocity profiles that can represent deformation styles ranging from shear-thickening viscoplastic flow to perfectly plastic frictional slip. This range of theoretical profiles encompasses the range of profiles measured in four persistently active northern California landslides. Also obtained from the datum-state equation of motion is an analytical solution for datum-state landslide sediment fluxes. An important feature of this solution is that it represents theoretical landslide sediment fluxes as a family of continuous-functions. The solution thus provides a mathematical basis for a general perturbation analysis of the kinematics of unsteady, nonuniform landslide motion, which will be presented in a companion paper in a subsequent issue of the Journal.

Journal of Geology↗

Amphibian population declines: 30 Years of progress in confronting a complex problem

In 1989, it dawned on participants at the First World Congress of Herpetology that observed declines in amphibian populations might actually be global in scope and unprecedented in severity. Three decades of research since then has produced an enormous increase in our knowledge of amphibian ecology and appreciation of the complexity of possible causes for amphibian population declines. In September 2019, 30 yr after the First World Congress ended, a day-long, international symposium on amphibian population declines was held at the Redpath Museum of McGill University in Montreal, Canada. Symposium participants drew upon the knowledge gained over three decades of study to look ahead with fresh ideas to address this vital aspect of the global decline of biodiversity. Despite tremendous progress over the past three decades there is still much about amphibian ecology, population biology, and pathology that remains unknown. Amphibian declines have turned out to be more complex than originally expected and the result of multiple possible causes acting across landscapes, among taxa, or between populations in ways that are not at all uniform. The papers in this special issue of Herpetologica , which stem from the symposium, explore much of our current understanding of amphibian declines and their causes.

Herpetologica↗

Eutrophication of freshwater and marine ecosystems

Initial understanding of the links between nutrients and aquatic productivity originated in Europe in the early 1900s, and our knowledge base has expanded greatly during the past 40 yr. This explosion of eutrophication-related research has made it unequivocally clear that a comprehensive strategy to prevent excessive amounts of nitrogen and phosphorus from entering our waterways is needed to protect our lakes, rivers, and coasts from water quality deterioration. However, despite these very significant advances, cultural eutrophication remains one of the foremost problems for protecting our valuable surface water resources. The papers in this special issue provide a valuable cross section and synthesis of our current understanding of both freshwater and marine eutrophication science. They also serve to identify gaps in our knowledge and will help to guide future research.

Limnology and Oceanography↗

Biology and conservation of Xantus's Murrelet: Discovery, taxonomy and distribution

The biology of Xantus's Murrelets Synthliboramphus hypoleucus is similar in many respects to better-studied Ancient Murrelets S. antiquus, especially regarding morphology and the species' precocial mode of post-hatching development. It nests mainly in rock crevices but also under shrubs on islands in southern California, United States, and northwestern Baja California, Mexico (27 o N to 34 o N). The species was discovered in 1859 by Janos Xantus. Two subspecies ( S. h. hypoleucus and S. h. scrippsi ) are recognized that show limited evidence of interbreeding. At sea, closely related Craveri's Murrelets S. craveri co-occur with Xantus's Murrelets off California and western Baja California during half the year, but the former species has a discrete breeding range in the Gulf of California, Mexico. Breeding was documented at 13 island groups between 1863 and 1976. Post-breeding dispersal as far north as central British Columbia, Canada (c. 52 o N) was observed in the 1940s to 1960s. A few Xantus's Murrelets disperse south of breeding colonies to Magdalena Bay, Baja California (c. 24 o N). The southernmost record is the type specimen collected by Xantus near Cabo San Lucas, Baja California (c. 23 o N). Chief threats to this species include introduced mammalian predators on breeding islands, heightened predation by natural predators in human-modified island habitats, and oil pollution. In January 2005, a Pacific Seabird Group special symposium, "Biology and conservation of the Xantus's Murrelet," highlighted conservation concerns and promoted publication of recent studies of this little-known alcid, with nine symposium papers published in this issue of Marine Ornithology. Much of what we know about Xantus's Murrelets has been learned in recent years, and many aspects of biology remain to be described.

Marine Ornithology: Journal of Seabird Research an↗

The type specimens of Hekstra's owl

Twenty-four new subspecies of New World owls of the genus Otus were named in a paper by Hekstra (1982b) issued 17 December 1982. These same new names also appeared in Hekstra's (1982a) unpublished thesis. The holotypes of the new taxa are in 10 different collections, most of which are in the United States. Incorrect information was published with regard to museum designation, museum number, and collecting locality of many of the holotypes. I here list the holotypes with their correct specimen label data. The species names are here presented in the sequence proposed by Marshall & King (1988). The subspecies are generally arranged from north to south. The type localities given are standardized, and the spellings are corrected where required. Abbreviations for museum designations are given under acknowledgments. The numbers following the names refer to the pages where the descriptions were given (Hekstra 1982b). Several of the scientific names proposed were spelled incorrectly and these have been emended in accord with Article 31c and Appendix D of the International Code (International Commission on Zoological Nomenclature 1985). Taxonomic comments are appended for a small number of Hekstra's proposed taxa. The remaining forms he named require further study.

Report↗

Assessment of Folsom Lake Watershed response to historical and potential future climate scenarios

An integrated forecast-control system was designed to allow the profitable use of ensemble forecasts for the operational management of multi-purpose reservoirs. The system ingests large-scale climate model monthly precipitation through the adjustment of the marginal distribution of reservoir-catchment precipitation to reflect occurrence of monthly climate precipitation amounts in the extreme terciles of their distribution. Generation of ensemble reservoir inflow forecasts is then accomplished with due account for atmospheric- forcing and hydrologic- model uncertainties. These ensemble forecasts are ingested by the decision component of the integrated system, which generates non- inferior trade-off surfaces and, given management preferences, estimates of reservoir- management benefits over given periods. In collaboration with the Bureau of Reclamation and the California Nevada River Forecast Center, the integrated system is applied to Folsom Lake in California to evaluate the benefits for flood control, hydroelectric energy production, and low flow augmentation. In addition to retrospective studies involving the historical period 1964-1993, system simulations were performed for the future period 2001-2030, under a control (constant future greenhouse-gas concentrations assumed at the present levels) and a greenhouse-gas- increase (1-% per annum increase assumed) scenario. The present paper presents and validates ensemble 30-day reservoir- inflow forecasts under a variety of situations. Corresponding reservoir management results are presented in Yao and Georgakakos, A., this issue. Principle conclusions of this paper are that the integrated system provides reliable ensemble inflow volume forecasts at the 5-% confidence level for the majority of the deciles of forecast frequency, and that the use of climate model simulations is beneficial mainly during high flow periods. It is also found that, for future periods with potential sharp climatic increases of precipitation amount and to maintain good reliability levels, operational ensemble inflow forecasting should involve atmospheric forcing from appropriate climatic periods.

Open-File Report↗