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At least 73 records · Page 4Linked to original sources
USGS2013

Assessment of spectral band impact on intercalibration over desert sites using simulation based on EO-1 Hyperion data

Since the beginning of the 1990s, stable desert sites have been used for the calibration monitoring of many different sensors. Many attempts at sensor intercalibration have been also conducted using these stable desert sites. As a result, site characterization techniques and the quality of intercalibration techniques have gradually improved over the years. More recently, the Committee on Earth Observation Satellites has recommended a list of reference pseudo-invariant calibration sites for frequent image acquisition by multiple agencies. In general, intercalibration should use well-known or spectrally flat reference. The reflectance profile of desert sites, however, might not be flat or well characterized (from a fine spectral point of view). The aim of this paper is to assess the expected accuracy that can be reached when using desert sites for intercalibration. In order to have a well-mastered estimation of different errors or error sources, this study is performed with simulated data from a hyperspectral sensor. Earth Observing-1 Hyperion images are chosen to provide the simulation input data. Two different cases of intercalibration are considered, namely, Landsat 7 Enhanced Thematic Mapper Plus with Terra Moderate Resolution Imaging Spectroradiometer (MODIS) and Environmental Satellite MEdium Resolution Imaging Spectrometer (MERIS) with Aqua MODIS. The simulation results have confirmed that intercalibration accuracy of 1% to 2% can be achieved between sensors, provided there are a sufficient number of available measurements. The simulated intercalibrations allow explaining results obtained during real intercalibration exercises and to establish some recommendations for the use of desert sites for intercalibration.

IEEE Transactions on Geoscience and Remote Sensing↗
USGS2022

First principles calibration of 40Ar abundances in 40Ar/39Ar mineral neutron fluence monitors: Methodology and preliminary results

The accuracy and traceability of geochronometers are of vital importance to questions asked by many Earth scientists. The widely applied 40 Ar/ 39 Ar geochronometer relies on the co-irradiation of samples with neutron fluence monitors (reference materials) of known ages; the ages and uncertainties of these monitors are critical to our ability to apply this chronometer. Previously, first principles, astronomical and optimisation calibrations have been made. The first principles method for determining the age of monitor minerals is the K-Ar method, which involves measurement of their 40 K and 40 Ar* abundances. The AQuA (Absolute Quantities of Argon) pipette system, which emits calibrated quantities of 40 Ar* via the ideal gas law, was used to calibrate the sensitivity of the system across a range of source pressures and estimate 40 Ar* abundances in neutron fluence monitors. These 40 Ar abundances were combined with existing 40 K abundance data for these monitors. Ages for HD-B1 and MD2 (GA1550) biotite fluence monitors were calculated and combined with intercalibration data for HD-B1 and Fish Canyon sanidine (FCs) to determine ages for FCs. Current results do not have the targeted accuracy when compared with previous calibrations; however, we show how the extensive methodology development presented here can be used towards making reliable future measurements.

Geostandards and Geoanalytical Research↗
USGS2019

Optical characterization of two cyanobacteria genera, Aphanizomenon and Microcystis, with hyperspectral microscopy.

Cyanobacterial blooms are a nuisance and a potential hazard in freshwater systems worldwide. Remote sensing has been used to detect cyanobacterial blooms, but few studies have distinguished between genera of cyanobacteria. Because some genera are more likely to be toxic than others, this is a useful distinction.In this study, hyperspectral imaging reflectance microscopy was used to examine cyanobacteria from Upper Klamath Lake, Oregon, USA, at high spatial and spectral resolution to determine if two species found commonly in the lake, Aphanizomenon flos-aquae and Microcystis aeruginosa, can be separated spectrally. Of the analytical methods applied, a spectral shape algorithm applied to the derivative was found to be most successful in classifying these species in microscope scenes. Further work is required to determine if the spectral characterization of cyanobacterial genera can be scaled up to other remote sensing applications.

Oregon↗
USGS2002

Operating the EOSDIS at the land processes DAAC managing expectations, requirements, and performance across agencies, missions, instruments, systems, and user communities

NASA developed the Earth Observing System (EOS) during the 1990'S. At the Land Processes Distributed Active Archive Center (LP DAAC), located at the USGS EROS Data Center, the EOS Data and Information System (EOSDIS) is required to support heritage missions as well as Landsat 7, Terra, and Aqua. The original system concept of the early 1990'S changed as each community had its say - first the managers, then engineers, scientists, developers, operators, and then finally the general public. The systems at the LP DAAC - particularly the largest single system, the EOSDIS Core System (ECS) - are changing as experience accumulates, technology changes, and each user group gains influence. The LP DAAC has adapted as contingencies were planned for, requirements and therefore plans were modified, and expectations changed faster than requirements could hope to be satisfied. Although not responsible for Quality Assurance of the science data, the LP DAAC works to ensure the data are accessible and useable by influencing systems, capabilities, and data formats where possible, and providing tools and user support as necessary. While supporting multiple missions and instruments, the LP DAAC also works with and learns from multiple management and oversight groups as they review mission requirements, system capabilities, and the overall operation of the LP DAAC. Stakeholders, including the Land Science community, are consulted regularly to ensure that the LP DAAC remains cognizant and responsive to the evolving needs of the user community. Today, the systems do not look or function as originally planned, but they do work, and they allow customers to search and order of an impressive amount of diverse data.

Conference Paper↗
USGS2007

MODIS imagery as a tool for synoptic water quality assessments in the southern California coastal ocean

The dynamics of rainstorm plumes in the coastal waters of southern California was studied during the Bight'03 Regional Water Quality Program surveys. Measurements of surface salinity and bacterial counts collected from research vessels were compared to MODIS-Aqua satellite imagery. The spectra of normalized water-leaving radiation (nLw) were different in plumes and ambient ocean waters, enabling plumes discrimination and plume area size assessments from remotely-sensed data. The plume/ocean nLw differences (i.e., plume optical signatures) were most evident during first days after the rainstorm over the San Pedro shelf and in the San Diego region and less evident in Santa Monica Bay, where suspended sediments concentration in discharged water was lower than in other regions. In the Ventura area, plumes contained more suspended sediments than in other regions, but the grid of ship-based stations covered only a small part of the freshwater plume and was insufficient to reveal the differences between the plume and ocean optical signatures. The accuracy of plume area assessments from satellite imagery was not high (77% on average), seemingly because of inexactitude in satellite data processing. Nevertheless, satellite imagery is a useful tool for the estimation of the extent of polluted plumes, which is hardly achievable by contact methods.

Conference Paper↗
USGS2015

Soil geochemical survey of abandoned mining sites in the Eastern-Central Peloritani Mountains, Sicily, Italy

This investigation focused on topsoils ( n = 122) and vertical profiles ( n = 6) distributed over an area of 250 km 2 in the eastern-central Peloritani Mountains, northeastern Sicily. Georeferenced concentration of 53 elements (including potentially harmful ones), determined by ICP-MS after an aqua regia leach, were used to produce geochemical maps by means of a GIS-aided spatial interpolation process. Results show that there are two distinct areas: the larger, located between the Fiumendinisi, Budali and Ali villages, and the other between C. Postlioni and Femmina Morta, which contain anomalous As (up to 727 mg/kg), Sb (up to 60 mg/kg), Ag (up to 1 mg/kg) and Au (up to 0.1 mg/kg) concentrations. Most of the investigated areas have high contamination levels for As, Zn, Sb, and Pb that exceed the threshold values (As = 20 mg/kg, Zn = 150 mg/kg, Sb = 10 mg/kg and Pb = 100 mg/kg) established for soils by the Italian Environmental Law ( Decreto Legislativo 2006 , number 152). The isotopic ratios of 206 Pb/ 207 Pb and 208 Pb/ 207 Pb have been measured in selected soils on both leaches [using 1M HNO 3 –1.75M HCl (50:50)] and residues thereof. Soil leach reflects possible anthropogenic contamination, whereas soil residues indicate geogenic contributions. Results suggest that most of contamination in the soils is related to the presence of sulphide and sulphosalt rock-forming minerals in the surveyed area. The soil fraction contains a Pb value >1600 mg/kg and has ratios of 1.1695 for 206 Pb/ 207 Pb and 2.4606 for 208 Pb/ 207 Pb. Only one soil leach isotopic composition could reflect possible anthropogenic contamination. The correlation among As, Zn, Pb contents v. Pb isotopic signatures of 206 Pb/ 207 Pb indicates that surface and deep soils collected from profiles are dominated by geogenic compositions.

Peloritani Mountains, Sicily↗
USGS2011

Distribution and habitat associations of radio-tagged adult Lost River suckers and shortnose suckers in Upper Klamath Lake, Oregon

Radiotelemetry was used to investigate the summer distribution and diel habitat associations of endangered adult Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris in northern Upper Klamath Lake, Oregon. From 2002 to 2004, Lost River and shortnose suckers were tracked by boat, and water depth and water quality were measured at each fish location. A series of water quality monitors were deployed in northern Upper Klamath Lake to provide temporal information on ambient temperature, pH, and dissolved oxygen, and water samples were collected to assess chlorophyll a concentration. Suckers moved into northern Upper Klamath Lake during June and began to leave in late September each year. Kernel density estimates revealed differences in the distribution in the northern portion of Upper Klamath Lake in 2002 and 2004. In 2003, however, both Lost River and shortnose suckers were commonly located within and offshore from Pelican Bay, a shallow (1.0-2.0 m), groundwater-influenced area of Upper Klamath Lake. This was especially obvious beginning in late July of 2003, concurrent with reduced dissolved oxygen levels (<4.0 mg/L) in the northern portion of Upper Klamath Lake that resulted from a die-off of the cyanobacterium Aphanizomenon flos-aquae . Both Lost River and shortnose suckers were generally associated with water depths greater than the mean depth (2.8 m) of northern Upper Klamath Lake. Evidence ratios did not suggest diel differences in depth, temperature, dissolved oxygen, or pH at sucker locations. Both Lost River and shortnose suckers generally occupied depths greater than 2.0 m, except when suckers sought refuge in Pelican Bay during periods of poor water quality. Despite the potential for increased avian predation, suckers appeared to benefit from moving into Pelican Bay rather than staying in areas where dissolved oxygen was low. Pelican Bay appears to be an important refugium and thus may be important for sucker conservation.

Oregon↗
USGS2009

Benthic nutrient sources to hypereutrophic Upper Klamath Lake, Oregon, USA

Three collecting trips were coordinated in April, May, and August 2006 to sample the water column and benthos of hypereutrophic Upper Klamath Lake (OR, USA) through the annual cyanophyte bloom of Aphanizomenon flos‐aquae . A pore‐water profiler was designed and fabricated to obtain the first high‐resolution (centimeter‐scale) estimates of the vertical concentration gradients of macro‐ and micronutrients for diffusive‐flux determinations. A consistently positive benthic flux for soluble reactive phosphorus (SRP) was observed with solute release from the sediment, ranging between 0.4 and 6.1 mg/m 2 /d. The mass flux over an approximate 200‐km 2 lake area was comparable in magnitude to riverine inputs. An additional concern related to fish toxicity was identified when dissolved ammonium also displayed consistently positive benthic fluxes of 4 to 134 mg/m 2 /d, again comparable to riverine inputs. Although phosphorus was a logical initial choice by water quality managers for the limiting nutrient when nitrogen‐fixing cyanophytes dominate, initial trace‐element results from the lake and major inflowing tributaries suggested that the role of iron limitation on primary productivity should be investigated. Dissolved iron became depleted in the lake water column during the course of the algal bloom, while dissolved ammonium and SRP increased. Elevated macroinvertebrate densities, at least of the order of 10 4 individuals/m 2 , suggested that the diffusive‐flux estimates may be significantly enhanced by bioturbation. In addition, heat‐flux modeling indicated that groundwater advection of nutrients could also significantly contribute to internal nutrient loading. Accurate environmental assessments of lentic systems and reasonable expectations for point‐source management require quantitative consideration of internal solute sources.

Environmental Toxicology and Chemistry↗
USGS2005

Global Visualization (GloVis) Viewer

GloVis (http://glovis.usgs.gov) is a browse image-based search and order tool that can be used to quickly review the land remote sensing data inventories held at the U.S. Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS). GloVis was funded by the AmericaView project to reduce the difficulty of identifying and acquiring data for user-defined study areas. Updated daily with the most recent satellite acquisitions, GloVis displays data in a mosaic, allowing users to select any area of interest worldwide and immediately view all available browse images for the following Landsat data sets: Multispectral Scanner (MSS), Multi-Resolution Land Characteristics (MRLC), Orthorectified, Thematic Mapper (TM), Enhanced Thematic Mapper Plus (ETM+), and ETM+ Scan Line Corrector-off (SLC-off). Other data sets include Terra Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and Moderate Resolution Imaging Spectroradiometer (MODIS), Aqua MODIS, and the Earth Observing-1 (EO-1) Advanced Land Imager (ALI) and Hyperion data.

Fact Sheet↗
USGS2001

Geochemical analysis of soils and sediments, Coeur d'Alene drainage basin, Idaho: sampling, analytical methods, and results

This report presents the locations, descriptions, analytical procedures used, and an inter-lab comparison of over 1100 geochemical analyses of samples of soil and sediment in and downstream of a major lead-zinc-silver mining district in the Coeur d'Alene (CdA) drainage basin of northern Idaho. The samples fall in 3 broad categories: (1) samples from vertical profiles of floodplain soils in the valley of the main stem of the CdA River (767 samples) and of the South Fork of the CdA River (38 samples), (2) size fractionated surficial samples of sediment bedload within the channel of the South Fork of the CdA River (68 samples), and (3) samples from vertical profiles of sediment bedload within the channel of the main stem of the CdA River (260 samples). Five different laboratories contributed geochemical data for this report. Four of the five laboratories employed analytical methods that require sample dissolution prior to analysis; one laboratory (US Geological Survey) used analytical instrumentation (energy dispersive x-ray fluorescence [EDXRF]) that is applied to pulverized samples. Some dissolution procedures use four acids (hydrochloric, nitric, perchloric, and hydrofluoric; Eastern Washington University [EWU] Geochemical Laboratory and XRAL Laboratories, Inc.), others use two acids (nitric acid and aqua regia; CHEMEX Labs, Inc.), and some use only concentrated nitric acid (ACZ Laboratories, Inc.). Most analyses of dissolved samples were done by Inductively Coupled Plasma - Atomic Emission Spectroscopy (ICP-AES) or by ICP - MS (Mass Spectroscopy). Some analyses for Ag and K were done by Flame Atomic Absorption (FAA). Inter-laboratory comparisons are made for 6 elements: lead (Pb), zinc (Zn), iron (Fe), manganese (Mn), arsenic (As), and cadmium (Cd). In general inter-laboratory correlations are better for samples within the compositional range of the Standard Reference Materials (SRMs) from the National Institute of Standards and Technology (NIST). Analyses by EWU are the most accurate relative to the NIST standards (mean recoveries within 1% for Pb, Fe, Mn, and As, 3% for Zn and 5% for Cd) and are the most precise (within 7% of the mean at the 95% confidence interval). USGS-EDXRF is similarly accurate for Pb and Zn. XRAL and ACZ are relatively accurate for Pb (within 5-8% of certified NIST values), but were considerably less accurate for the other 5 elements of concern (10-25% of NIST values). However, analyses of sample splits by more than one laboratory reveal that, for some elements, XRAL (Pb, Mn, Cd) and ACZ (Pb, Mn, Zn, Fe) analyses were comparable to EWU analyses of the same samples (when values are within the range of NIST SRMs). These results suggest that, for some elements, XRAL and ACZ dissolutions are more effective on the matrix of the CdA samples than on the matrix of the NIST samples (obtained from soils around Butte, Montana). Splits of CdA samples analyzed by CHEMEX were the least accurate, yielding values 10-25% less than those of EWU.

Idaho↗
USGS2007

Quantifying the benthic source of nutrients to the water column of Upper Klamath Lake, Oregon

Executive Summary Five sampling trips were coordinated in April, May and August 2006, and May and July 2007 to sample the water column and benthos of Upper Klamath Lake, OR (Fig. 1; Table 1), before, during and after the annual cyanophyte bloom of Aphanizomenon flos-aquae (AFA). A pore-water profiler was designed and fabricated to obtain the first high-resolution (centimeter-scale) estimates of the vertical concentration gradients for diffusive-flux determinations. Estimates based on molecular diffusion may underestimate benthic flux because solute transport across the sediment-water interface can be enhanced by processes including bioturbation, bioirrigation and ground-water advection. Water-column and benthic samples were also collected to help interpret spatial and temporal trends in diffusive-flux estimates. Data from these samples complement geochemical analyses of bottom-sediments taken from Upper Klamath Lake (UKL) in 2005. This ongoing study provides information necessary for developing process-interdependent solute-transport models for the watershed (that is, models integrating physical, geochemical and biological processes), and supports efforts to evaluate remediation or load-allocation strategies. To augment studies funded by the U.S. Bureau of Reclamation (USBR), the Department of Interior supported an additional full deployment of pore-water profilers in July 2007, during the summer AFA bloom. Results from this recent field trip are not fully completed. Data not presented herein will be included in a subsequent publication, scheduled for March 2009.

Oregon↗
USGS2007

Water velocity and suspended solids measurements by in-situ instruments in Upper Klamath Lake, Oregon

The U. S. Geological Survey conducted hydrodynamic measurements in Upper Klamath Lake during four summer seasons (approximately mid-June to mid-September) during 2003 to 2006. Measurements included water current profiles made by acoustic Doppler current profilers at a number of fixed locations in the lake during all four years as well as from a moving boat during 2005 and 2006. Measurements of size distribution of suspended material were made at four locations in the lake during 2004-2006. Raw (unfiltered) data are presented as time series of measurements. In addition, water-velocity data have been filtered to remove wind-induced variations with periods less than thirty hours from the measurements. Bar graphs of horizontal and vertical water speed and acoustic backscatter have been generated to discern diurnal variations, especially as they relate to wind patterns over the lake. Mean speeds of the horizontal currents in the lake range between about 3.5 to 15 cm/s with the higher speeds at the deep locations in the trench on the west side of the lake. Current directions generally conform to the lake’s bathymetry contours and the water circulation pattern is usually in a clockwise direction around the lake as established by the prevailing north to northwesterly surface winds in the region. Diurnal patterns in horizontal currents probably relate to diurnal wind patterns with minimum wind speeds near noon and maximum wind speeds near 2100. Diurnal variations in vertical velocities do not appear to be related to wind patterns; they do appear to be related to expected patterns of vertical migration of Aphanizomenon flos aquae , (AFA) the predominant species of blue-green algae in the lake. Similarly, diurnal variations in acoustic backscatter, especially near the lake’s surface, are probably related to the vertical migration of AFA.

Oregon↗
USGS2008

Klamath River Water Quality and Acoustic Doppler Current Profiler Data from Link River Dam to Keno Dam, 2007

In 2007, the U.S. Geological Survey, Watercourse Engineering, and the Bureau of Reclamation began a project to construct and calibrate a water quality and hydrodynamic model of the 21-mile reach of the Klamath River from Link River Dam to Keno Dam. To provide a basis for this work, data collection and experimental work were planned for 2007 and 2008. This report documents sampling and analytical methods and presents data from the first year of work. To determine water velocities and discharge, a series of cross-sectional acoustic Doppler current profiler (ADCP) measurements were made on the mainstem and four canals on May 30 and September 19, 2007. Water quality was sampled weekly at five mainstem sites and five tributaries from early April through early November, 2007. Constituents reported here include field parameters (water temperature, pH, dissolved oxygen concentration, specific conductance); total nitrogen and phosphorus; particulate carbon and nitrogen; filtered orthophosphate, nitrite, nitrite plus nitrate, ammonia, organic carbon, iron, silica, and alkalinity; specific UV absorbance at 254 nm; phytoplankton and zooplankton enumeration and species identification; and bacterial abundance and morphological subgroups. The ADCP measurements conducted in good weather conditions in May showed that four major canals accounted for most changes in discharge along the mainstem on that day. Direction of velocity at measured locations was fairly homogeneous across the channel, while velocities were generally lowest near the bottom, and highest near surface, ranging from 0.0 to 0.8 ft/s. Measurements in September, made in windy conditions, raised questions about the effect of wind on flow. Most nutrient and carbon concentrations were lowest in spring, increased and remained elevated in summer, and decreased in fall. Dissolved nitrite plus nitrate and nitrite had a different seasonal cycle and were below detection or at low concentration in summer. Many nutrient and carbon concentrations were similar at the top and bottom of the water column, though ammonia and particulate carbon showed more variability in summer. Averaged over the season, particulate carbon and particulate nitrogen decreased in the downstream direction, while ammonia and orthophosphate concentrations increased in the downstream direction. At most sites, bacteria, phytoplankton, and zooplankton populations reached their maximums in summer. Large bacterial cells made up most of the bacteria biovolume, though cocci were the most numerous bacteria type. The cocci were smaller than the filter pore sizes used to separate dissolved from particulate matter in this study. Phytoplankton biovolumes were dominated by the blue-green alga Aphanizomenon flos-aquae most of the sampling season, though a spring diatom bloom occurred. Phytoplankton biovolumes were generally highest at the upstream Link River and Railroad Bridge sites and decreased in the downstream direction. Zooplankton populations were dominated by copepods in early spring, and by cladocerans and rotifers in summer, with rotifers more common farther downstream.

Open-File Report↗
USGS2010

The transition of benthic nutrient sources after planned levee breaches adjacent to upper Klamath and Agency Lakes, Oregon

Four sampling trips were coordinated after planned levee breaches that hydrologically reconnected both Upper Klamath Lake and Agency Lake, Oregon, to adjacent wetlands. Sets of nonmetallic pore-water profilers were deployed during these trips in November 2007, June 2008, May 2009, and July 2009. Deployments temporally spanned the annual cyanophyte bloom of Aphanizomenon flos-aquae (AFA) and spatially involved three lake and four wetland sites. Profilers, typically deployed in triplicate at each lake or wetland site, provided high-resolution (centimeter-scale) estimates of the vertical concentration gradients for diffusive-flux determinations. Estimates based on molecular diffusion may underestimate benthic flux because solute transport across the sediment-water interface can be enhanced by processes including bioturbation, bioirrigation and groundwater advection. Water-column and benthic samples were also collected to help interpret spatial and temporal trends in diffusive-flux estimates. Data from these samples complement taxonomic and geochemical analyses of bottom-sediments taken from Upper Klamath Lake (UKL) in prior studies. This ongoing study provides information necessary for developing process-interdependent solute-transport models for the watershed (that is, models integrating physical, geochemical, and biological processes) and supports efforts to evaluate remediation or load-allocation strategies. To augment studies funded by the U.S. Bureau of Reclamation (USBR), the Department of the Interior supported an additional full deployment of pore-water profilers in November 2007 and July 2009, immediately following the levee breaches and after the crash of the annual summer AFA bloom. As observed consistently since 2006, benthic flux of 0.2-micron filtered, soluble reactive phosphorus (that is, biologically available phosphorus, primarily as orthophosphate; SRP) was consistently positive (that is, out of the sediment into the overlying water column) and ranged from a negligible value (-0.19?0.91 milligrams per square meter per day; mg m-2 d-1) within wetlands of the Upper Klamath National Wildlife Refuge to 74?48 mg m-2 d-1 at the newly restored wetland site removed from the levee breach (TNC1); both observed in May 2009 before the annual AFA bloom. When areally averaged (13 km2 for the newly restored wetlands), an SRP flux to the overlying water column is determined of approximately 87,000 kilograms (kg) over the 3-month AFA bloom season that exceeds the magnitude of riverine inputs (42,000 kg for the season). Elevated SRP benthic flux at TNC1 relative to all other lake and wetland sites (including TNC2 near the breached levee) in 2009 suggests that the restored wetlands, at least chemically, remain in a transition period after engineered blasts on October 30, 2007, restored hydrologic connectivity between lake and wetland environments. As reported in previous lake studies, ammonium fluxes to the water column were consistently positive, with the exception of two measurements at the restored wetland sites (TNC1 and TNC2) immediately following the levee breaches in November 2007. The flux of ammonia, particularly at elevated pH in the overlying water column, has toxicological implications for endangered fish populations in both lake and wetland environments. For dissolved nitrate, with the exception of a single positive flux measurement at TNC1 in June 2008 (0.16?0.02 mg m-2 d-1), consistently negative (consumed by the sediment) or undetectable nitrate-flux values were observed (-21?12 mg m-2 d-1 to undetectable fluxes due to concentrations for dissolved nitrate <0.03 milligrams per liter (mg L-1) in both porewaters and overlying waters near the sediment-water interface). Such negative fluxes for dissolved nitrate are typical of microbial transformations, such as dinitrification (dissimilatory nitrate reduction), that benthically consume nitrate from the water column. The diffusive-flux measurements reported herei

Oregon↗
USGS2012

Time scales of change in chemical and biological parameters after engineered levee breaches adjacent to Upper Klamath and Agency Lakes, Oregon

Eight sampling trips were coordinated after engineered levee breaches hydrologically reconnected both Upper Klamath Lake and Agency Lake, Oregon, to adjacent wetlands. The reconnection, by a series of explosive blasts, was coordinated by The Nature Conservancy to reclaim wetlands that had for approximately seven decades been leveed for crop production. Sets of nonmetallic porewater profilers (U.S. Patent 8,051,727 B1; November 8, 2011; http://www.uspto.gov/web/patents/patog/ week45/OG/html/1372-2/US08051727-20111108.html.) were deployed during these trips in November 2007, June 2008, May 2009, July 2009, May 2010, August 2010, June 2011, and July 2011 (table 1). Deployments temporally spanned the annual cyanophyte bloom of Aphanizomenon flos-aquae and spatially involved three lake and four wetland sites. Spatial and temporal variation in solute benthic flux was determined by the field team, using the profilers, over an approximately 4-year period beginning 3 days after the levee breaches. The highest flux to the water column of dissolved organic carbon (DOC) was detected in the newly flooded wetland, contrasting negative or insignificant DOC fluxes at adjacent lake sites. Over the multiyear study, DOC benthic fluxes dissipated in the reconnected wetlands, converging to values similar to those for established wetlands and to the adjacent lake (table 2). In contrast to DOC, benthic sources of soluble reactive phosphorus, ammonium, dissolved iron and manganese from within the reconnected wetlands were consistently elevated (that is, significant in magnitude relative to riverine and established-wetland sources) indicating a multi-year time scale for certain chemical changes after the levee breaches (table 2). Colonization of the reconnected wetlands by aquatic benthic invertebrates during the study trended toward the assemblages in established wetlands, providing further evidence of a multiyear transition of this area to permanent aquatic habitat (table 3). Both the lake and wetland benthic environments substantively contribute to macro- and micronutrients in the water column. Wetland areas undergoing restoration, and those being used for water storage, function very differently relatively to the established wetland within the Upper Klamath Lake National Wildlife Refuge, adjacent Upper Klamath Lake. Developing long-term management strategies for water quality in the Upper Klamath Basin requires recognition of the multi-year time scales associated with restoring wetlands that provide natural, seasonal ecosystem function and services.

Oregon↗
USGS2012

Water-quality data from Upper Klamath and Agency Lakes, Oregon, 2009-10

The U.S. Geological Survey Upper Klamath Lake water-quality monitoring program collected data from multiparameter continuous water-quality monitors, weekly water-quality samples, and meteorological stations during 2009 and 2010 from May through November each year. The results of these measurements and sample analyses, as well as quality-control data for the water-quality samples, are presented in this report for 14 sites on Upper Klamath Lake and 2 sites on Agency Lake. These 2 years of data demonstrate a contrast in the seasonal bloom of the dominant cyanobacterium, Aphanizomenon flos-aquae , that can be related to differences in the measured water quality and meteorological variables. Some of the significant findings from 2009 and 2010 are listed below. * Both 2009 and 2010 were characterized by two cyanobacteria blooms, but the blooms differed in timing and intensity. The first bloom in 2009 peaked in late June and at higher chlorophyll a concentrations at most sites than the first bloom in 2010, which peaked in mid-July. A major decline in the first 2009 bloom occurred in late July and was followed by a second bloom that peaked at most sites in mid-August and persisted through September. The decline of the weaker first bloom in 2010 occurred in early August and was followed by a more substantial second bloom that peaked between late August and early September at most sites. * Dissolved oxygen minima associated with bloom declines occurred approximately 2 weeks earlier in 2009 (mid-July) than in 2010 (early August). pH maxima associated with rapid bloom growth occurred in late June and again in mid-August in 2009 and in mid-July and late August in 2010. * In both years, the maxima for total phosphorus and total nitrogen concentrations coincided with the chlorophyll a maximum. The maxima for dissolved nutrient concentrations (orthophosphate, ammonia, and nitrite plus nitrate) coincided with the declines of the first blooms. * Total particulate carbon, total particulate nitrogen, and total particulate phosphorus concentrations were measured in 2009 only. The ratios of carbon to phosphorus and nitrogen to phosphorus in particulates were the highest of the entire season during the rapid growth phase of the first bloom and were the lowest of the season during the decline of the first bloom. These ratios increased with the onset of the second bloom in that year, but to a lesser degree. * Meteorological data show that 2009 was warmer (particularly in June and July), less windy, and more humid early in the season than 2010. The difference in water temperatures reflected the difference in air temperatures in that the lakes were warmer in 2009 than in 2010 starting in early May, when the sensors were deployed, through most of June. Water temperature peaked at a higher value in 2009, and there were more clear days in June 2009 than in June 2010.

Oregon↗
USGS2013

Characterization of cyanophyte biomass in a Bureau of Reclamation reservoir

The purpose of this study was to characterize the cyanophyte Aphanizomenon flos-aquae (AFA) from Upper Klamath Lake, Oregon, (UKL) and, based on this description, explore uses for AFA, which would have commercial value. AFA collected from UKL in 2010 from eight sites during a period of approximately 2 weeks were similar in composition spatially and temporally. 31P nuclear magnetic resonance analysis of the samples indicated that the AFA samples contained a broad range of phosphorus-containing compounds. The largest variation in organic phosphorus compounds was found in a sample collected from Howard Bay compared with samples collected the sites at Pelican Marina, North Buck Island, Eagle Ridge, Eagle Ridge South, Shoalwater Bay, and Agency Lake South. 31 P Nuclear Magnetic Resonance data indicated that the average ratio of inorganic phosphorus (orthophosphate) to organic phosphorus in the AFA samples was approximately 60:40 in extraction solutions of either water or a more rigorous solution of sodium hydroxide plus ethylenediaminetetraacetic acid. This indicates that when AFA cells senesce, die and lyse, cell contents added to the water column contain a broad spectrum of phosphorus-containing compounds approximately 50 percent of which are organic phosphorus compounds. The organic phosphorus content of AFA is directly and significantly related to the total carbon content of AFA. Total concentrations of the elements Al, Ca, Fe, Mg, Ti and Zn were similar in all samples with the exception of elevated iron in the July 27, 2010, sample from Pelican Marina. Iron concentration in the July 27, 2010, Pelican Marina sample was elevated; the concentration of iron in the August 9, 2010, sample from Pelican Marina was indistinguishable from iron in the other AFA samples that were collected. The carbon to nitrogen ratio in all AFA samples that were analyzed was 5.4 plus or minus 0.04 as compared with the Redfield ratio of carbon to nitrogen ratio of 6.6, which could be attributed to the large concentrations of nitrogen (protein) in AFA or to optimal growth rate. In UKL there is a concern that microcystin, the toxin produced by microcystis, might be present in what appears to be predominantly AFA in the lake water. Experiments preformed as part of this study identified a process that reduces the toxicity of microcystin when it is present in water slurry containing AFA. The process combines (1) the inhibition of the α, ß-unsaturated carbonyl in microcystin with (2) the breakdown of proteins in AFA using the protease activity of plant enzymes. Protease enzymes can break peptide bonds in microcystin, which results in destruction of the cyclic structure of the microcystin polypeptide. Laboratory conditions used in this study resulted in the inactivation of approximately 60 percent of the activity of microcystin.

Oregon↗