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Water-quality characteristics of Montana streams in a statewide monitoring network, 1999-2003

A statewide monitoring network of 38 sites was operated during 1999-2003 in cooperation with the Montana Department of Environmental Quality to provide a broad geographic base of water-quality information on Montana streams. The purpose of this report is to summarize and describe the water-quality characteristics for those sites. Samples were collected at U.S. Geological Survey streamflow-gaging stations in the Missouri, Yellowstone, and Columbia River basins for stream properties, nutrients, suspended sediment, major ions, and selected trace elements. Mean annual streamflows were below normal during the period, which likely influenced water quality. Continuous water-temperature monitors were operated at 26 sites. The median of daily mean water temperatures for the June-August summer period ranged from 12.5 degC at Kootenai River below Libby Dam to 23.0 degC at Poplar River near Poplar and Tongue River at Miles City. In general, sites in the Missouri River basin commonly had the highest water temperatures. Median daily mean summer water temperatures at four sites (Jefferson River near Three Forks, Missouri River at Toston, Judith River near Winifred, and Poplar River near Poplar) classified as supporting or marginally supporting cold-water biota exceeded the general guideline of 19.4 degC for cold-water biota. Median daily mean temperatures at sites in the network classified as supporting warm-water biota did not exceed the guideline of 26.7 degC for warm-water biota, although several sites exceeded the warm-water guideline on several days during the summer. More...

Scientific Investigations Report

Statistical summaries of streamflow data in Oregon; Volume 1, eastern Oregon

Statistical summaries of streamflow data at 335 streamgaging sites are presented in this two volume report to aid in appraising the hydrology of river basins in Oregon. Records for 31 gaging stations were compiled into separate periods owing to changes in regulation during the period of data collection. The periods before and after regulation are presented for comparison. A brief station description is given describing the physical and operational features for each gaging station. Following the station description are tables of monthly and annual flow statistics, flood frequency data, low-flow and high-flow frequency data, and flow-duration information. (USGS)

Oregon

Effect of the Paradox Valley Unit on the dissolved-solids load of the Dolores River near Bedrock, Colorado, 1988-2001

Discharge of brine with an average dissolved-solids concentration of about 256,000 milligrams per liter from alluvium in Paradox Valley, a collapsed salt anticline, substantially increases the dissolved-solids load of the Dolores River. In 1996, the Bureau of Reclamation began operation of the Paradox Valley Unit, a series of brine-withdrawal wells completed in alluvium along the Dolores River and a deep-injection well for the brine, to decrease flow of brine into the river. This report presents the findings of a study to determine the effectiveness of the Paradox Valley Unit from 1988 through September 2001. Differences in dissolved-solids load of the Dolores River between two gaging stations, one upstream and one downstream from the Paradox Valley Unit, indicate that an average dissolved-solids load of about 313 tons per day (an annual average of about 115,000 tons) was contributed by brine inflow to the Dolores River before operation of the Paradox Valley Unit began in July 1996. By September 30, 2001, the dissolved-solids load contributed by brine had declined to an average of about 29 tons per day? a decrease of about 90 percent. This decrease might have been facilitated by a decrease in precipitation and streamflow into the Paradox Valley during the last few years of the assessed period.

Water-Resources Investigations Report

Pacific Northwest Aquatic Monitoring Partnership 2017 Annual Report

The Pacific Northwest Aquatic Monitoring Partnership (PNAMP) continued to promote the integration of monitoring resources and development of tools to support monitoring in 2017. Improved coordination and integration of goals, objectives, and activities among Pacific Northwest monitoring programs is essential to improving the quality and consistency of monitoring in the region. PNAMP operates through inter-organizational teams to make progress on a variety of projects identified to support partner needs and PNAMP goals. These teams are largely ad hoc and formed for the specific purpose of achieving the objectives of the identified projects. For each project, the PNAMP Coordination Team identified interested Steering Committee (SC) members and subject matter experts to form the working teams that provide guidance and leadership. In addition, the teams acted as an intermediate between the larger group of interested participants and the SC, thus maintaining the concept of better SC/participant exchange. The PNAMP Coordination Team continued to facilitate dialog among experts to move forward with ongoing and new projects. In addition, the Coordination Team continued their efforts to track in-kind contributions of time from participants at meetings, workshops, and other PNAMP hosted events; in 2017 this estimate amounted to 2,039 hours by 67 organizations.

Report

Evaluation of a two-season banding program to estimate and model migratory bird survival

The management of North American waterfowl is predicated on long-term, continental scale banding implemented prior to the hunting season (i.e., July–September) and subsequent reporting of bands recovered by hunters. However, single-season banding and encounter operations have a number of characteristics that limit their application to estimating demographic rates and evaluating hypothesized limiting factors throughout the annual cycle. We designed and implemented a 2-season banding program for American black ducks ( Anas rubripes ), mallards ( A . platyrhynchos ), and hybrids in eastern North America to evaluate potential application to annual life cycle conservation and sport harvest management. We assessed model fit and compared estimates of annual survival among data types (i.e., pre-hunting season only [July–September], post-hunting season only [January–March], and 2-season [pre- and post-hunting season]) to evaluate model assumptions and potential application to population modeling and management. There was generally high agreement between estimates of annual survival derived using 2-season and pre-season only data for all age and sex cohorts. Estimates of annual survival derived from post-season banding data only were consistently higher for adult females and juveniles of both sexes. We found patterns of seasonal survival varied by species, age, and to a lesser extent, sex. Hunter recovered birds exhibited similar spatial distributions regardless of banding season suggesting banded samples were from the same population. In contrast, Goodness-Of-Fit tests suggest this assumption was statistically violated in some regions and years. We conclude that estimates of seasonal and annual survival for black ducks and mallards based on the 2-season banding program are valid and accurate based on model fit statistics, similarity in survival estimates across data and models, and similarities in the distribution of recoveries. The 2-season program provides greater precision and insight into the survival process and will improve the ability of researchers and managers to test competing hypotheses regarding population regulation resulting in more effective management.

Ecological Applications

Ground-Water Levels in Huron County, Michigan, 2004-05

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to measure water levels at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships retained continuous waterlevel recorders, while the wells in Grant and Bingham Townships reverted primarily to periodic or quarterly measurement status. USGS also has provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 25 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 25 periodically or quarterly-measured wells is summarized in an annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for ground-water levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville or Harbor Beach, or both (National Oceanic and Atmospheric Administration, 2003-05), and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration, 2003-05). In March 2003, a new low-water level for the period from 1991 through 2005 was measured in Lake Huron. There was almost no net change in the water level of Lake Huron from January 2004 through December 2005. In 2004, annual precipitation measured in Port Hope was about 3.7 inches above normal, but precipitation measured in Bad Axe was about 1.4 inches below normal. About 14.5 inches of precipitation was measured in Bad Axe during the 2004 summer growing season (May through August), which is about the same as was measured in Port Hope during the same period. Provisional precipitation totals for 2005 were 30.7 inches for January through November in Port Hope, and about 31.7 inches for the year in Bad Axe. About 10.6 inches of precipitation was measured in Bad Axe during the 2005 summer growing season, which is about 0.2 inches more than was recorded at Port Hope during the same period. Two wells equipped with continuous-data recorders are completed in the Saginaw and Marshall aquifers in Fairhaven and Lake Townships, respectively. From January 2004 through December 2005, the net rise in the water level in the Fairhaven Township well was 0.71 ft, and the net rise in the Lake Township well was 0.98 ft. The Fairhaven Township well is drilled adjacent to Saginaw Bay (Lake Huron), and, as previously noted, there was almost no net change in the water level in Saginaw Bay over the same period. Hydrographs showing water levels are presented for the two wells equipped with continuous-data recorders. Continuous-data recorders were discontinued in the Grant and Bingham Township wells at the end of 2003 due to budget constraints. The decision of which two wells to discontinue was based on an analysis of the intrinsic value to Huron County of data from each well. The Grant Township well was selected for periodic or quarterly measurement at that time because it is completed in the glacial aquifer, which is little used for drinking water purposes or absent in much of Huron County. The Bingham Township well, which is completed in the Marshall aquifer, was selected for periodic or quarterly measurement because water levels in the well are often perturbed as a result of pumpage from nearby production wells and do not reflect baseline conditions within the aquifer. Twenty five wells were measured on a periodic or quarterly basis in 2004-05. These wells are completed in the glacial, Saginaw, and Marshall aquifers, and the Coldwater confining unit. Although each quarterly measurement only provides a “snapshot” water level (measured in feet below land surface), the data adequately define the generalized water-level trend in the aquifer near the well. Water levels in 15 quarterlymeasured wells had a net rise ranging from 0.20 to 1.31 ft for the period from January 2004 to December 2005, while water levels in 10 of the wells had a net decline ranging from 0.07 to 0.99 ft over the same period (fig. 3; table 1). Period-of-record (the time period when water levels have been measured by U.S. Geological Survey or their cooperators) minimum depths to water (high-water levels) were measured in March 2004 in two quarterly-measured wells completed in the Marshall aquifer in Lake and Hume Townships. Period-of-record maximum depths to water were measured in September 2005 in three wells completed in the Marshall aquifer near Bad Axe. Water levels in those three wells recovered about 3 to 5 ft between September and December 2005. No period-of-record minimum or maximum depths to water were measured for the period from January 2004 through December 2005 in wells completed in either the glacial and Saginaw aquifers, or the Coldwater confining unit. Hydrographs showing water levels measured in each well are presented for the 25 wells measured on a quarterly basis. Water-level trends measured for the period from January 2004 through December 2005 in other wells in Lower Michigan have similarities to those measured in Huron County wells. Several external factors influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan

Ground-water levels in Huron County, Michigan, 2002-03

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to collect water-level altitudes (hereafter referred to as water levels) at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships will have continuous water-level recorders, while the wells in Grant and Bingham Townships will revert to quarterly measurement status. USGS has also provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 23 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 23 quarterly-measured wells is also summarized in the annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for groundwater levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville and Harbor Beach, and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration [NOAA], 2002-04; Danny Costello, NOAA hydrologist, written commun., 2003-04). In March 2003, a new low-water level for the period of this study was measured in Lake Huron (National Oceanic and Atmospheric Administration, 2003; 2004). The net decline in the water level of Lake Huron from January 1, 2002 to December 31, 2003 was about 0.3 ft. Annual precipitation in 2002 was about 0.3 inches above normal, with much of it occurring during summer months. The provisional precipitation total for 2003 is about an inch below normal (NOAA, 2003, 2004; Danny Costello, NOAA hydrologist, written commun., 2003, 2004). Four wells equipped with continuous-data recorders are completed in the glacial, Saginaw, and Marshall aquifers. Water levels in three of the four wells equipped with continuous-data recorders experienced a net decline over the period from January 2002 to December 2003, while the level in well H9r, completed in the Saginaw aquifer in Fairhaven Township adjacent to Saginaw Bay (Lake Huron), rose about 1.3 ft over the same period. Interestingly, the water level in Saginaw Bay declined about 0.3 ft over the same period. A period-ofrecord maximum depth to water was recorded in September 2003 in well H25Ar, completed in the Marshall aquifer in Lake Township. Hydrographs showing altitude of the water surface are presented for each of four wells equipped with continuous-data recorders. Twenty three wells were measured on a quarterly basis in 2002-03. These wells are completed in the Saginaw and Marshall aquifers, and Coldwater confining unit. Although each quarterly measurement only provides a “snapshot” water level, the data adequately define the “generalized” water-level trend in the aquifer near the well. The water level in one quarterly-measured well completed in the Saginaw aquifer near Saginaw Bay, had a net rise for the period from January 2002 to December 2003, while levels in the other 22 quarterly-measured wells declined about 0.5 to 2.0 ft during the same period. A period-of-record minimum depth to water (high) was measured in 2002 in two quarterly-measured wells completed in the Saginaw aquifer, although the level in one of those wells had a net decline over the period from January 2002 through December 2003. Conversely, period-of-record maximum depths to water (low) were measured in 2002 in one well completed in the Saginaw aquifer and two wells completed in the Marshall aquifer; and in 2003, in 6 of 16 wells completed in the Marshall aquifer. Near period-ofrecord maximum depths to water were measured in 2003 in two additional wells completed in the Marshall aquifer. No period-of-record minimum or maximum depths to water were measured in 2002-03 in wells completed in the Coldwater confining unit. Hydrographs showing water levels measured in each well are presented for the 23 wells measured on a quarterly basis. Water-level trends measured in 2002-03 in other wells in Lower Michigan have similarities to those measured in Huron County wells. Several external factors appear to influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan

Ground-water levels in Huron County, Michigan, 2004-05

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to measure water levels at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships retained continuous waterlevel recorders, while the wells in Grant and Bingham Townships reverted primarily to periodic or quarterly measurement status. USGS also has provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 25 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 25 periodically or quarterly-measured wells is summarized in an annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for ground-water levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville or Harbor Beach, or both (National Oceanic and Atmospheric Administration, 2003-05), and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration, 2003-05). In March 2003, a new low-water level for the period from 1991 through 2005 was measured in Lake Huron. There was almost no net change in the water level of Lake Huron from January 2004 through December 2005. In 2004, annual precipitation measured in Port Hope was about 3.7 inches above normal, but precipitation measured in Bad Axe was about 1.4 inches below normal. About 14.5 inches of precipitation was measured in Bad Axe during the 2004 summer growing season (May through August), which is about the same as was measured in Port Hope during the same period. Provisional precipitation totals for 2005 were 30.7 inches for January through November in Port Hope, and about 31.7 inches for the year in Bad Axe. About 10.6 inches of precipitation was measured in Bad Axe during the 2005 summer growing season, which is about 0.2 inches more than was recorded at Port Hope during the same period. Two wells equipped with continuous-data recorders are completed in the Saginaw and Marshall aquifers in Fairhaven and Lake Townships, respectively. From January 2004 through December 2005, the net rise in the water level in the Fairhaven Township well was 0.71 ft, and the net rise in the Lake Township well was 0.98 ft. The Fairhaven Township well is drilled adjacent to Saginaw Bay (Lake Huron), and, as previously noted, there was almost no net change in the water level in Saginaw Bay over the same period. Hydrographs showing water levels are presented for the two wells equipped with continuous-data recorders. Continuous-data recorders were discontinued in the Grant and Bingham Township wells at the end of 2003 due to budget constraints. The decision of which two wells to discontinue was based on an analysis of the intrinsic value to Huron County of data from each well. The Grant Township well was selected for periodic or quarterly measurement at that time because it is completed in the glacial aquifer, which is little used for drinking water purposes or absent in much of Huron County. The Bingham Township well, which is completed in the Marshall aquifer, was selected for

Michigan

Using the STARS model to evaluate the effects of the proposed action for the reinitiation of consultation on the coordinated long-term operation of the Central Valley and State Water Project

In 2016, the U.S. Bureau of Reclamation (USBR) and California Department of Water Resources requested a reinitiation of consultation under Section 7 of the Endangered Species Act on the coordinated long-term operations of the Central Valley and State Water Projects. This resulted in a Biological Assessment released by USBR in 2019. In its analysis of the Biological Assessment for its Biological Opinion on the proposed action, the National Marine Fisheries Service (NMFS) requested assistance from the U.S. Geological Survey to describe the effect of the proposed action on juvenile Chinook salmon ( Oncorhynchus tshawytscha ) populations migrating through the Sacramento-San Joaquin River Delta (henceforth called “the Delta”). Therefore, in this report we analyzed an 82-year time series of simulated river flows and Delta Cross Channel (DCC) gate operations under two scenarios constructed for the Biological Assessment: the proposed-action (PA) scenario and the continuing-operations scenario (COS). To evaluate the proposed action, we used the STARS model ( S urvival, T ravel time, A nd R outing S imulation model), a stochastic, individual-based simulation model designed to predict survival of a cohort of fish that experiences variable daily river flows as the fish migrate through the Delta. The STARS model uses parameter estimates from a Bayesian mark-recapture model that jointly estimates travel time and survival in eight discrete reaches of the Delta and migration routing at two key river junctions. By applying the STARS model to the two 82-year scenarios, we found that the proposed action had negative effects on survival, travel time, and routing in October–December but positive effects in April–June. In October–December, there was a high probability that survival in the PA scenario was less than that in the COS, and that travel time and routing to the Interior Delta for the PA scenario was greater than that for the COS. The magnitude of the difference in survival between scenarios was larger in some years than in others. For example, we quantified that survival under the PA scenario was 10 percent lower than under the COS in 25 percent of the water years from October through December. During this period, inflow to the Delta tended to be lower under the PA scenario, and the DCC gate was open more frequently under the PA scenario than during the COS. Lower inflow reduces survival, and more frequent operation of the DCC gate 1) increases the proportion of fish entering the Interior Delta, where survival is low, and thus 2) reduces survival in the Sacramento River in reaches downstream of the DCC. In contrast, during the period April–June, survival was higher, travel times were lower, and routing to the Interior Delta was lower under the PA scenario relative to the COS, although the magnitude of the increase in survival was relatively small in most years (less than a 3-percent difference in survival). This difference between scenarios was driven by higher river flows in some years under the PA scenario relative to the COS. Overall, the differences in survival, travel time, and routing distance between the two operational scenarios were primarily driven by the timing and magnitude of the annual high river flows.

California

Designing a high-frequency nutrient and biogeochemical monitoring network for the Sacramento–San Joaquin Delta, northern California

Executive Summary This report is the third in a series of three reports that provide information about how high-frequency (HF) nutrient monitoring may be used to assess nutrient inputs and dynamics in the Sacramento–San Joaquin Delta, California (Delta). The purpose of this report is to provide the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high-priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta. For three example network designs, we assess how they would address high-priority questions that have been identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015). This report, along with the other two reports of this series (Kraus and others, 2017; Downing and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for both fixed station and spatial assessments. Finally, it presents numerous examples of how HF measurements are currently (2017) being used in the Delta to examine how nutrients and nutrient cycling are related to aquatic habitat conditions. The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the north Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently (2017) operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales, such as within a few hours, but also significant variability at longer timescales such as months or years. This high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in Delta tidal environments.

California

An introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

Executive Summary This report is the first in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). This first report provides an introduction to the reasons for and fundamental concepts behind collecting HF measurements, and describes the benefits associated with a real-time, continuous, HF, multi-parameter water quality monitoring station network that is co-located with flow stations. It then provides examples of how HF nutrient measurements have improved our understating of nutrient sources and cycling in aquatic systems worldwide, followed by specific examples from the Delta. These examples describe the ways in which HF instrumentation may be used for both fixed-station and spatial assessments. The overall intent of this document is to describe how HF measurements currently (2017) are being used in the Delta to examine the relationship between nutrient concentrations, nutrient cycling, and aquatic habitat conditions. The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the northern Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first, at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event (for example, storms, reservoir releases, phytoplankton blooms) timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. This multi-scale, high variability affects calculation of fluxes and loads, indicating that HF monitoring is necessary for understanding and assessing flux-based processes and outcomes in tidal environments, such as the Delta. The third report in the series (Bergamaschi and others, 2017) provides information about how to design HF nutrient and biogeochemical monitoring for assessment of nutrient inputs and dynamics in the Delta. The report provides background, principles, and considerations for designing an HF nutrient-monitoring network for the Sacramento–San Joaquin Delta to address high-priority, nutrient-management questions. The report starts with high-priority management questions to be addressed, continues with questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient‑monitoring network designs for the Delta. For the three example networks, we assess how they would address high-priority questions identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).

California

Computation of continuous records of streamflow

Records of continuous streamflow, published in the U.S. Geological Survey annual Water Data Reports for the States and territories, are computed from field data, mainly discharge measurements and recorder charts or tapes. This manual describes the computation procedures used and some details of related field operations. It was compiled mostly from unpublished Water Resource Division district manuals edited and supplemented to emphasize digital-recorder and associated computer use. Methods used primarily for graphic-recorder gaging stations and non-recording gages are also included. Reference is made to other publications for some of the more specialized or unusually complex procedures.

Techniques of Water-Resources Investigations

Bridge scour monitoring methods at three sites in Wisconsin

Of the nearly 11,500 bridges in Wisconsin, 89 have been assessed with critical scour conditions. The U.S. Geological Survey, in cooperation with the Wisconsin Department of Transportation, the Marathon County Highway Department, and the Jefferson County Highway Department, performed routine monitoring of streambed elevations for three bridges. Two monitoring approaches were employed: (1) manual monitoring using moderately simple equipment, and (2) automated monitoring, using moderately sophisticated electronic equipment. The results from all three sites demonstrate that both techniques can produce reasonable measurements of streambed elevation. The manual technique has a lower annual operating cost, and is useful for cases where documentation of long-term trends is desired. The automated technique has a higher annual operating cost and is useful for real-time monitoring of episodic events with short time durations.

Wisconsin

Ground-water levels in Huron County, Michigan, 2006-07

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to measure water levels at selected wells throughout Huron County. As part of the agreement, USGS initially operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham (H5r), Fairhaven (H9r), Grant (H2r), and Lake Townships (H25Ar) and summarized the data collected in an annual or bi-annual report (fig. 1). The agreement was altered in 2003, and beginning January 1, 2004, only wells H9r and H25Ar retained continuous water-level recorders, while wells H2r and H5r reverted to quarterly or periodic measurement status due to budget constraints. The decision of which two wells to discontinue was based on an analysis of the intrinsic value to Huron County of data from each well. Well H2r was selected for periodic measurement at that time because it is completed in the glacial aquifer, which is absent in much of Huron County and well H5r, which is completed in the Marshall aquifer, was selected because the water level in the well is often perturbed as a result of pumpage from nearby production wells and does not always reflect baseline conditions within the aquifer. USGS also has provided training for County or Huron Conservation District personnel to measure the water level in 24 of the wells on a quarterly basis. USGS personnel accompany County or Huron Conservation District personnel on a semi-annual basis to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the wells is summarized in an annual or bi-annual report. The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for groundwater levels in Huron County. Figure 2 shows the meanmonthly water-level altitude of Lake Huron, averaged from measurements made at Essexville and Harbor Beach (National Oceanic and Atmospheric Administration, 2008), and monthly precipitation measured in Harbor Beach, Sebewaing, and Bad Axe (National Oceanic and Atmospheric Administration, Danny Costello, written commun., 2007-08). In December 2007, the water level in Lake Huron dropped to a new monthly mean low of 576.38 ft for the period from 1988 through 2007 (the previous lowwater level of 576.57 ft was measured in March 2003). The net decline in the water level of Lake Huron from January 2006 through December 2007 was 0.68 ft. In 2006, annual precipitation measured at Harbor Beach was 3.2 in. above the long-term average of 31.1 in., with 10.6 in. measured during the 2006 growing season (May through August). In 2007, annual precipitation measured at Harbor Beach was 1.4 in. below normal, with 9.7 in. measured during the growing season. In the two wells equipped with continuous waterlevel recorders, the water level rose 0.32 ft from January 1, 2006 to December 31, 2007 in well H9r, but declined 1.11 ft in well H25Ar. Curiously, well H9r is drilled adjacent to Saginaw Bay (Lake Huron), and, as previously noted, there was a 0.68 ft decline in the water level in Saginaw Bay during that period. Twenty four wells were measured on a quarterly or periodic basis from December 2005 through December 2007 (well H26 was destroyed during summer 2007 reducing the total number of wells from 25). These wells are completed in the glacial, Saginaw and Marshall aquifers, and the Coldwater confining unit. Although each quarterly or periodic measurement only provides a “snapshot” water level (measured in ft below land surface, and altitude, in ft above sea level), the data adequately define the generalized water-level trend in the aquifer near the well. Water levels in 6 quarterly-measured wells had net rises ranging from 0.09 to 1.45 ft for the period, while water levels in 18 of the wells had net declines ranging from 0.26 to 2.19 ft (tables 1 and 2; fig. 3). Period-of-record (the time period during which water levels have been measured by U.S. Geological Survey or their cooperators) minimum depths to water (high-water levels) were measured in March and December 2006 in two quarterly-measured wells completed in the Saginaw aquifer in Oliver and Sebewaing Townships, respectively. A period-of-record minimum depth to water was also recorded June 5, 2007 in well H9r, completed in the Michigan Formation/Marshall aquifer in Fairhaven Township. Period-of-record maximum depths to water were measured in September 2007 in two wells completed in the Marshall aquifer in Oliver and Dwight Townships. Notably, water levels in those two wells recovered about 1 to 3 ft between September and December 2007. No period-of-record minimum or maximum depths to water were measured in wells completed in either the glacial aquifer or the Coldwater confining unit from December 2005 through December 2007. Several external factors influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan

Distribution, abundance, breeding activities, and habitat use of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2020–24 summary report

Executive Summary The purpose of this report is to provide the Marine Corps with a summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos ( Vireo bellii pusillus ) at Marine Corps Base Camp Pendleton, California (MCBCP or Base). The report presents results of vireo surveys and monitoring in 2024 and summarizes a subset of data collected from 2020 through 2024. Surveys for the Least Bell's Vireo were completed at MCBCP between April 4 and July 9, 2024. Core survey areas and a subset of non-core areas in drainages containing riparian habitat suitable for vireos were surveyed two to four times. We detected 542 territorial male vireos and 17 transient vireos in core survey areas. An additional 102 territorial male vireos and 2 transients were detected in non-core survey areas. Transient vireos were detected on 5 of the 10 drainages/sites surveyed (core and non-core areas). In core survey areas, 87 percent of vireo territories were on the four most populated drainages, with the Santa Margarita River containing 67 percent of all territories in core areas surveyed on Base. In core areas, 77 percent of male vireos were confirmed as paired; 76 percent of male vireos in non-core areas were confirmed as paired. The number of documented Least Bell’s Vireo territories in core survey areas on MCBCP decreased 3 percent from 2023. In five core survey area drainages, the number of territories increased by at least two, and in two core survey area drainages, the Santa Margarita River and Las Flores Creek, the number of vireo territories decreased by at least nine between 2023 and 2024. The number of vireo territories at Marine Corps Air Station, Camp Pendleton did not change from 2023 to 2024. The proportion of surveys during which Brown-headed Cowbirds ( Molothrus ater ) were detected decreased to 0.03 from a peak of 0.45 in 2022. Cowbirds were detected in April and June in 2024. Most core-area vireos (58 percent, including transients) used mixed willow ( Salix spp.) riparian habitat. An additional 9 percent of birds occupied willow habitat co-dominated by Western sycamores ( Platanus racemosa ). Riparian scrub dominated by mule fat ( Baccharis salicifolia ), sandbar willow ( S. exigua ), or blue elderberry ( Sambucus mexicana ) was used by 33 percent of vireos. Habitat dominated by non-native vegetation was used by 1 percent of vireos. Since 2020, the number of vireos detected in each of the non-core survey groups was greater than expected, based on the change in vireo numbers in core survey areas. Although, the number of vireo territories on Base decreased from 2020–24, from approximately 1,224 to approximately 960, the trend in vireo territory numbers on Base since 2005 has been positive. In 2019, MCBCP began operating an artificial seep along the Santa Margarita River; then, in 2021, two additional artificial seeps became operational. The artificial seeps pumped water to the surface during daylight hours starting in mid-April and ending in August each year and were designed to increase the amount of surface water to enhance Southwestern Willow Flycatcher ( Empidonax traillii extimus ) breeding habitat. Although this enhancement was designed to benefit flycatchers, few flycatchers have inhabited MCBCP, including the seep areas, within the past several years; therefore, vireos were selected as a surrogate species to determine effects of the habitat enhancement. This report presents the fifth year of annual monitoring and analyses summarizing all 5 years of vireo and vegetation response to the artificial seeps. In 2020, we established four study sites along the Santa Margarita River, two surrounding and extending downstream from existing and proposed seep pumps at the Old Treatment Ponds and along Pump Road and two Reference sites in similar habitat downstream from the Seep sites. Seep pumps began operating at the Old Treatment Ponds in 2020 and along Pump Road in 2021. In 2023, seep pumps at the Pump Road Seep site did not function, and we recategorized that study site as Intermediate. We sampled vegetation at Seep, Intermediate, and Reference sites to determine the effects of surface-water enhancement by seep pumps. In 2024, vegetation cover was highest near the ground and decreased with increasing height. Woody vegetation made up most of the cover at all height categories. We determined that Seep and Intermediate sites differed from each other in addition to differing from Reference sites, which likely is, in part, because seep-pump operation at the Intermediate site was inconsistent compared to the Seep site. Soil saturation in 2024 was high at the Intermediate site and was associated with high native herbaceous cover and low non-native herbaceous cover. Sites differed, with the Intermediate site having more upper canopy cover in general, the Seep site having more low woody cover, and the Reference sites having more mid-canopy non-native vegetation cover. Soil saturation significantly increased from 2020 through 2024 at the Seep site and was significantly higher at Seep and Intermediate sites than at their paired Reference sites in all years. Soil saturation likely was increased by the supplemental surface water at the Seep site. However, soil saturation at the Intermediate site was not clearly associated with seep pumps but likely affected by soil saturation at the site before seep-pump installation and flooding from high precipitation. Canopy height increased at the Intermediate site from 2020 through 2024 and increased with increasing soil saturation at the Intermediate and Reference sites. The canopy at the Seep site was shorter than at the Intermediate and Reference sites and decreased from 2020 through 2024 because tall trees were damaged and killed by shothole borer beetles ( Euwallacea spp.). We used Redundancy Analysis to discover associations among vegetation types, plant species, and other environmental variables (soil saturation, site, precipitation, and seep operation, defined as the site and year seep pumps were operating). These associations explained less than 15 percent of the variability in the vegetation, with the remaining 85 percent of variation unexplained. Generally, as soil saturation increased, understory vegetation increased and non-native cover decreased in the mid-and upper canopy. Non-native herbaceous plant species decreased in wetter soil. The Seep site was characterized by more understory and less canopy, contrasting with the Intermediate site, which was characterized by less understory and more higher canopy cover. The addition of surface water via seep pumps or precipitation was associated with more vegetation near the ground. Higher early winter precipitation was associated with taller canopy and more woody vegetation in the upper canopy. We also created a Redundancy Analysis model isolating the components of Southwestern Willow Flycatcher habitat, as identified by Howell and others (2018). In this model, increased soil saturation resulted in increased cover of stinging nettle ( Urtica dioica ) and black willow ( Salix gooddingii ) below 3 meters (m), total cover 3–6 m, and black willow above 6 m. Cover of poison hemlock ( Conium maculatum ) and stinging nettle below 3 m was higher at the Seep site and lower at the Intermediate site. Vireo territory density among the Seep, Intermediate, and Reference sites was similar before the seep pumps were installed. However, vireo territory density at Seep and Intermediate sites combined was significantly higher than at Reference sites after the seep pumps were installed. We banded and resighted color banded vireos as part of a long-term evaluation of vireo survival, site fidelity, between-year movement, and the effect of surface-water enhancement on vireo return rate and between-year movement. We banded 164 Least Bell's Vireo nestlings during the 2024 season. In 2024, we resighted 31 Least Bell's Vireos on Base that had been banded before the 2024 breeding season, and we were able to identify 25 of them. Of the 25 that we could identify, 24 were banded on Base and 1 was originally banded on the San Luis Rey River. Adult birds of known age ranged from 1 to 9 years old. Base-wide survival of vireos was affected by sex, age, and year. Males had significantly higher annual survival than females (60 percent versus 47 percent, respectively). Adults had higher annual survival than first-year vireos (61 percent versus 11 percent, respectively). The return rate of adult vireos to Seep, Intermediate, or Reference sites was not affected by the original banding site (Seep versus Intermediate versus Reference). Most returning adult vireos, predominantly males, showed strong between-year site fidelity. Of the adults present in 2023, 92 percent (all males) returned in 2024 to within 100 m of their previous territory. The average between-year movement for returning adult vireos was 0.4±0.03 kilometers (km). The average movement of first-year vireos detected in 2024 that fledged from a known nest on MCBCP in 2023 was 2.4±3.1 km. We monitored 47 Least Bell's Vireo pairs to evaluate the effects of surface-water enhancement on nest success and breeding productivity. Breeding productivity in 2024 was similar among Seep, Intermediate, and Reference sites (2.8, 3.0, and 3.0 young fledged per pair, respectively), and the percentage of pairs that fledged at least one young was not significantly different among sites (83, 91, and 96 percent, respectively). According to the best model, daily nest survival from 2020–24 was not related to site. Other measures of breeding productivity were also similar among Seep, Intermediate, and Reference site pairs. Between 2020 and 2024, the number of vireo fledglings produced per pair increased with increasing native herbaceous cover under 3 m and decreasing cover of all herbaceous vegetation under 5 m and was not affected by precipitation, site, or seep operation. The number of vireo fledglings produced per egg was lower at the Seep and Intermediate sites than at the Reference sites and increased with decreasing late winter precipitation, cover of poison hemlock, black mustard, non-native vegetation above 2 m, and all vegetation over 2 m. Vireo pairs at Seep and Intermediate sites were less likely to fledge young than vireo pairs at Reference sites. All vireo pairs were more likely to fledge young with less cover of poison hemlock and more cover of poison oak. From 2020 through 2024, vireos placed their nests in 24 plant species. The most used plants in all years were willows, mostly red ( S. laevigata ), or arroyo ( S. lasiolepis ). The fate of a vireo nest (whether it successfully fledged young or not) was not affected by placement in native or non-native vegetation, by site, or by year, but nests were more likely to be successful if they were placed in woody plants than in herbaceous plants. Successful nests were placed higher in the host plant and farther from the outer edge of the nest clump than unsuccessful nests.

California

NOAA-USGS Debris-Flow Warning System - Final Report

Landslides and debris flows cause loss of life and millions of dollars in property damage annually in the United States (National Research Council, 2004). In an effort to reduce loss of life by debris flows, the National Oceanic and Atmospheric Administration's (NOAA) National Weather Service (NWS) and the U.S. Geological Survey (USGS) operated an experimental debris-flow prediction and warning system in the San Francisco Bay area from 1986 to 1995 that relied on forecasts and measurements of precipitation linked to empirical precipitation thresholds to predict the onset of rainfall-triggered debris flows. Since 1995, there have been substantial improvements in quantifying precipitation estimates and forecasts, development of better models for delineating landslide hazards, and advancements in geographic information technology that allow stronger spatial and temporal linkage between precipitation forecasts and hazard models. Unfortunately, there have also been several debris flows that have caused loss of life and property across the United States. Establishment of debris-flow warning systems in areas where linkages between rainfall amounts and debris-flow occurrence have been identified can help mitigate the hazards posed by these types of landslides. Development of a national warning system can help support the NOAA-USGS goal of issuing timely Warnings of potential debris flows to the affected populace and civil authorities on a broader scale. This document presents the findings and recommendations of a joint NOAA-USGS Task Force that assessed the current state-of-the-art in precipitation forecasting and debris-flow hazard-assessment techniques. This report includes an assessment of the science and resources needed to establish a demonstration debris-flow warning project in recently burned areas of southern California and the necessary scientific advancements and resources associated with expanding such a warning system to unburned areas and, possibly, to a national scope.

Circular

U.S. Geological Survey scientific activities in the exploration of Antarctica: 1946-2006 record of personnel in Antarctica and their postal cachets: U.S. Navy (1946-48, 1954-60), International Geophysical Year (1957-58), and USGS (1960-2006)

Antarctica, a vast region encompassing 13.2 million km2 (5.1 million mi2), is considered to be one of the most important scientific laboratories on Earth. During the past 60 years, the USGS, in collaboration and with logistical support from the National Science Foundation's Office of Polar Programs, has sent 325 USGS scientists to Antarctica to work on a wide range of projects: 169 personnel from the NMD (mostly aerial photography, surveying, and geodesy, primarily used for the modern mapping of Antarctica), 138 personnel from the GD (mostly geophysical and geological studies onshore and offshore), 15 personnel from the WRD (mostly hydrological/glaciological studies in the McMurdo Dry Valleys), 2 personnel from the BRD (microbiological studies in the McMurdo Dry Valleys), and 1 person from the Director's Office (P. Patrick Leahy, Acting Director, 2005–06 austral field season). Three GD scientists and three NMD scientists have carried out field work in Antarctica 9 or more times: John C. Behrendt (15), who started in 1956–57 and published two memoirs (Behrendt, 1998, 2005), Arthur B. Ford (10), who started in 1960–61, and Gary D. Clow (9), who started in 1985–86; Larry D. Hothem (12), who began as a winter-over geodesist at Mawson Station in 1968–69, and Jerry L. Mullins (12), who started in 1982–83 and followed in the legendary footsteps of his NMD predecessor, William R. MacDonald (9), who started in 1960–61 and supervised the acquisition of more than 1,000,000 square miles of aerial photography of Antarctica. This report provides a record as complete as possible, of USGS and non-USGS collaborating personnel in Antarctica from 1946–2006, the geographic locations of their work, and their scientific/engineering disciplines represented. Postal cachets for each year follow the table of personnel and scientific activities in the exploration of Antarctica during those 60 years. To commemorate special events and projects in Antarctica, it became an international practice to create postal cachets. A cachet is defined as a seal, emblem, or commemorative design printed or stamped on an envelope to mark a philatelic or special event. All stamp collectors are familiar with engraved cachets on envelopes of "First-Day-of-Issue" stamps. For Antarctica, a stamped (inked) impression informs the scientist, historian, stamp collector, and general public about the multidisciplinary science projects staffed by USGS scientists and other specialists during a specific austral summer field season. Because philatelic cachets were created by team members for each USGS field season, in most cases depicting the specific areas and scientific objectives, the cachets have become a convenient documentation of the people, projects, and geographic places for that year. Because the cachets are representative of USGS activities, each year's cachet is included in that year's Open-File Report (1960–61 to 2005–06). Starting with the 1983–84 season, however, two USGS cachets were prepared for the next seven years, one for the winter team at Amundsen-Scott South Pole Station, until 1992–93, and the other for all other field sites. Multiple cachets were created by USGS divisional programs during the 1962–63, 1963–64, 1970–71, 1972–73, 1975–76, 1978–79, 1979–80, 1983–84, 1984–85, 1986–87, 1995–96, 2003–04, and the 2005–06 years. This report includes facsimiles of each annual postal cachet (or postal cachets) designed by USGS graphic specialists and provides a record of USGS personnel (and non-USGS collaborating scientists) and their science division affiliation for each austral field season. In addition, cachets used by USGS personnel for U.S. Navy Operation Highjump (1946–47), U.S. Navy Operation Windmill (1947–48), U.S. Navy U.S.S. Atka reconnaissance cruise (1954–55), U.S. Navy Operation Deep Freeze (DF) (I, 1955–56; II, 1956–57; III, 1957–58; IV, 1958–59; and DF 60, 1959–60), and the International Geophysical Year (1957–58) are included, because USGS scientists made use of these cachets when involved in each of the field activities during these austral field seasons.

Open-File Report

Using the STARS Model to evaluate the effects of two proposed projects for the long-term operation of State Water Project Incidental Take Permit Application and CEQA compliance

The California Department of Water Resources (DWR) requested analysis of juvenile Chinook salmon survival in the Sacramento-San Joaquin River Delta (henceforth identified as “the Delta”) as part of an effects analysis that will be included in an Incidental Take Permit (ITP) Application. This application is in compliance with the California Endangered Species Act (CESA) and Environmental Impact Report (EIR), which is itself in compliance with California Environmental Quality Act (CEQA). DWR is seeking an ITP and preparing CEQA compliance documentation for long-term operation of the State Water Project (SWP). DWR requested assistance from the U.S. Geological Survey to aid in determining the effect of two proposed projects on juvenile Chinook salmon ( Oncorhynchus tshawytscha ) populations migrating through the Delta. Therefore, in this report we analyzed an 82-year time series of simulated river flows and Delta Cross Channel (DCC) gate operations under three scenarios constructed for the ITP: the proposed project (PP), the second proposed project (PP2b) and the existing (EX) scenarios. To evaluate the proposed projects (PP and PP2b), we used the STARS model (Survival, Travel time, And Routing Simulation model), a stochastic, individual-based simulation model designed to predict survival of a cohort of fish that experience variable daily river flows during migration through the Delta. The STARS model uses parameter estimates from a Bayesian mark-recapture model that jointly estimates travel time and survival in eight discrete reaches of the Delta and migration routing at two key river junctions. By applying the STARS model to the three 82-year scenarios, we found that both proposed projects had negative effects on survival, travel time, and routing in November but slightly positive effects in October, December, and May, and in June for only the PP. In November, there was a high probability that survival for PP and PP2b were less than EX and that travel time and routing to the Interior Delta for PP and PP2b were greater than for EX. We found that the magnitude of the difference in survival between scenarios was large in some years. For example, survival under both the PP and PP2b scenarios were 10 percent lower than EX in 25 percent of the water years in November. During this period, inflow to the Delta tended to be lower under the PP and PP2b scenarios, and the DCC gate was open more frequently under the PP and PP2b scenarios relative to the EX scenario. Lower inflow reduces survival, and more frequent operation of the DCC gate 1) increases the proportion of fish entering the Interior Delta, where survival is low, and thus 2) reduces survival in the Sacramento River in reaches downstream of the DCC. In contrast, during October, December, May (both PP and PP2b), and June (PP only), survival was slightly higher, travel times were lower, and routing to the Interior Delta was lower under the PP and PP2b relative to the EX scenario in the same time period, although the magnitude of the increase was relatively small in most years (less than two percent). This difference between scenarios was driven by higher river flows in some years under the PP and PP2b relative to the EX scenario. Overall, the differences in survival, travel time, and routing distance between the three operational scenarios were primarily driven by the timing and magnitude of the annual high river flows.

California