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USGS2010

Survival of wood duck ducklings and broods in Mississippi and Alabama

Although North American wood ducks (Aix sponsa) are well-studied throughout their range, researchers know little about demographic and environmental factors influencing survival of ducklings and broods, which is necessary information for population management. We studied radiomarked female and duckling wood ducks that used nest boxes and palustrine wetlands at Noxubee National Wildlife Refuge (NNWR) in Mississippi, USA, in 1996-1999, and riverine wetlands of the Tennessee-Tombigbee Rivers and Waterway (TTRW) system in Alabama in 1998-1999. We estimated survival of ducklings and broods and evaluated potentially important predictors of duckling survival, including age and body mass of brood-rearing females, hatch date of ducklings, duckling mass, brood size at nest departure, inter-day travel distance by ducklings, site and habitat use, and daily minimum air temperature and precipitation. At NNWR, survival of 300 radiomarked ducklings ranged from 0.15 (95% CI = 0.04-0.27) to 0.24 (95% CI = 0.13-0.38) and was 0.21 (95% CI = 0.15-0.28) for 1996-1999. Our overall estimate of brood survival was 0.64 (n = 91; 95% CI = 0.54-0.73). At TTRW, survival of 129 radiomarked ducklings was 0.29 in 1998 (95% CI = 0.20-0.41) and 1999 (95% CI = 0.13-0.45) and was 0.29 (95% CI = 0.20-0.40) for 1998-1999. Our overall estimate of brood survival was 0.71 (n = 38; 95% CI = 0.56-0.85). At NNWR, models that included all predictor variables best explained variation in duckling survival. Akaike weight (wi) for the best model was 0.81, suggesting it was superior to other models (<0.01 ??? wi ???0.18). We detected 4 competing models for duckling survival at TTRW. Inter-day distance traveled by ducklings was important as this variable appeared in all 4 models; duckling survival was positively related to this variable. Patterns of habitat-related survival were similar at both study areas. Ducklings in broods that used scrub-shrub habitats disjunct from wetlands containing aggregations of nest boxes had greater survival probabilities than birds remaining in wetlands with such nest structures. Managers may increase local wood duck recruitment by promoting availability of suitable brood habitats (e.g., scrub-shrub wetlands) without aggregations of nest boxes that may attract predators and by dispersing nest boxes amid or adjacent to these habitats. We did not determine an optimal density of nest boxes relative to local or regional population goals, which remains important research and conservation needs.

Journal of Wildlife Management↗

USGS2017

Characterization of microsatellite loci for the Gulf Coast waterdog (Necturus beyeri) using paired-end Illumina shotgun sequencing and cross-amplification in other Necturus

Amphibians are one of the most threatened groups of vertebrates (Stuart et al. 2004; Wake and Vredenburg 2008), and the application of molecular techniques to amphibian ecology and genetics has dramatically improved our ability to conserve species and populations (see Shaffer et al. [2015] for review). Microsatellites, tandem repeats of two to six nucleotides in the nuclear genome, are highly variable molecular markers that can be used to describe gene flow and genetic diversity, each of which is positively correlated with population persistence (Allendorf and Luikart 2007; Allentoft and O’Brien 2010; Avise 2004; Selkoe and Toonen 2006). Microsatellite loci have frequently been applied to studies involving terrestrial and pond breeding amphibians (Emel and Storfer 2012), but fewer studies have focused on taxa inhabiting lotic systems (Emel and Storfer 2012). For example, studies characterizing microsatellite loci are completely lacking for a group of permanently aquatic salamanders, the waterdogs and mudpuppies (Family Proteidae, Genus Necturus ) (Rafinesque 1819). The genus Necturus consists of several species of perennibranch salamanders that can be found throughout many freshwater streams, rivers, and lakes in North America (Petranka 1998). Some authorities recognize five species (Crother 2012; Petranka 1998), including the Mudpuppy ( Necturus maculosus ) (Rafinesque 1819), Gulf Coast Waterdog ( N. beyeri ) (Viosca 1937), Black Warrior Waterdog ( N. alabamensis ) (Viosca 1937), Neuse River Waterdog ( N. lewisi ) (Brimley 1924), and Dwarf Waterdog ( N. punctatus ) (Gibbes 1850). This taxonomy also recognizes two subspecies within N. maculosus , including the Common Mudpuppy ( N. m. maculosus ) and the Red River Waterdog ( N. m. louisianensis ) (Crother 2012; Petranka 1998; Schmidt 1953). Other authorities suggest that there are six or seven species within Necturus (Collins 1990; Frost 2016; Powell et al. 2016). These more diverse schemes recognize each of the aforementioned five species while also elevating the Red River Waterdog ( N. louisianensis ) (Collins 1990; Frost 2016; Powell et al. 2016; Viosca 1938) and Löding’s Waterdog ( N. lödingi or N. cf. beyeri ) (Bart et al. 1997; Guyer 2005a; Viosca 1938). Allozyme work by Guttman et al. (1990) suggests that there is at least one cryptic species of Necturus in drainages east of the Mobile Basin and south of the Alabama River, and both Bart et al. (1997) and Guyer (2005a) advise that these populations should be referred to as N. cf. beyeri . However, until range wide studies incorporating genetic and other data are published, we will follow the five species taxonomy outlined by Crother (2012) while acknowledging that certain taxa, such as N. maculosus and N. beyeri , may require systematic revision.

Herpetological Review↗

USGS1979

Summary appraisals of the nation's ground-water resources– South Atlantic-Gulf region

Precipitation in the 270,000-square-mile South Atlantic-Gulf Region ranges from 44 to 80 inches, and the average runoff is about 15 inches. The ground-water discharge that forms the base flow of streams is conservatively estimated to be about 78,000 million gallons per day the equivalent of about 6 inches of precipitation. On this basis, the regional sustained ground-water supply is about 286,000 gallons per day per square mile. Projected water use through 2020 indicates that about 10 percent of the supply will meet the region's requirement for ground water. Enormous quantities of ground water are available in the South Atlantic-Gulf States in the extensive aquifers that underlie the Coastal Plain province. Large supplies of ground water can be developed also in places in the Cumberland Plateau and the Valley and Ridge provinces. In the Piedmont and Blue Ridge provinces ground water is available only in modest quantities. The principal Coastal Plain aquifers consist largely of deltaic sand and gravel deposits of Cretaceous to Quaternary age; however, a notable exception is the highly permeable Tertiary limestone aquifer, which underlies parts of four States. Ground water in the Blue Ridge and the Valley and Ridge provinces is available from openings along fissures and joints in consolidated rocks and from the unconsolidated sand and gravel in the residuum and alluvium that overlie the bedrock. In parts of these areas faulting and folding has created favorable conditions for the development of moderate supplies of ground water. In the Piedmont province modest quantities of water are available from joints and fractures. Solution cavities in massive limestone units in some areas underlying the Cumberland Plateau section yield very large quantities of ground water. Most of the major Coastal Plain aquifers are recharged where they are exposed and water moves downdip to the south. The general direction of ground-water movement in the Coastal Plain aquifers is seaward. There is, however, movement of water vertically and laterally that affects pressure and quality in every aquifer. Ground water of good chemical and physical quality is available generally except in a small area in western Alabama and eastern Mississippi and in some small coastal areas. Freshwater extends to depths of slightly more than 3,000 feet in some areas. In many areas, water can be produced that does not require any treatment for general use. The more common objectionable constituents or properties are excessive iron, fluoride, hardness, color, and acidity. Contamination or pollution of ground water is not a major regional problem, but it is significant in local areas. Many of these local problems of contamination were the result of earlier improper disposal of oil-field and industrial waste. Saltwater intrusion either directly from the sea or from estuaries has been reported in every State in the region, and the potential for the proliferation of this problem is very large. The relationship of ground water and surface water is significant at many places in the region where large ground-water withdrawals affect swamps, lakes, and the flow of streams and springs. There is a potential in some areas for using ground water during dry periods for low-flow augmentation of stream supplies. In other areas it is feasible to recharge ground-water reservoirs artificially by means of injection wells, pits, and water spreading. Although large water-level declines caused by withdrawals have occurred locally, water-level changes have been small or modest when considered on a regional basis owing to the abundant rainfall and favorable recharge conditions. The saline-water resources of the region are known to be extremely large. In some areas where the availability of freshwater is limited, saline ground water is available for desalinization to supplement freshwater supplies. Also, the saline aquifers are potential storage sites for injected freshwater. Ground-water problems generally are not severe. Critical situations are restricted to areas where large quantities of ground water are being withdrawn or where aquifers are contaminated by oil-field or industrial waste. Large withdrawals in coastal areas have caused some saltwater intrusion. In other localities, highly mineralized water may have migrated along fault zones to freshwater aquifers. Many of the present problems can be resolved or ameliorated by redistributing withdrawals or developing alternative water sources.

Alabama, Florida, Georgia, Mississippi, North Caro↗

USGS2012

A catalog of Louisiana's nesting seabird colonies

Summarizing his colonial nesting waterbird survey experiences along the northern coast of the Gulf of Mexico in a paper presented to the Colonial Waterbird Group of the Waterbird Society (Portnoy 1978), bird biologist John W. Portnoy stated, “This huge concentration of nesting waterbirds, restricted almost entirely to the wetlands and estuaries of southern Louisiana, is unmatched in all of North America; for example, a 1975 inventory of wading birds along the Atlantic Coast from Maine to Florida [Custer and Osborn, in press], tallied 250,000 breeding [waterbirds] of 14 species, in contrast with the 650,000 birds of 15 species just from Sabine Pass to Mobile Bay.” The “650,000 birds” to which Portnoy referred, were tallied by him in a 1976 survey of coastal Louisiana, Mississippi, and Alabama (see below, under “Major Surveys” section). According to the National Atlas of Coastal Waterbird Colonies in the Contiguous United States: 1976-82 (Spendelow and Patton 1988), the percentages of the total U.S. populations of Laughing Gull (11%), Forster's Tern (52%), Royal Tern (16%), Sandwich Tern (77%), and Black Skimmer (44%) which annually nest in Louisiana are significant – perhaps crucially so in the cases of Forster's Tern, Sandwich Tern, and Black Skimmer. Nearly three decades after Spendelow and Patton's determinations above, coastal Louisiana still stands out as the major center of colonial wading bird and seabird nesting in all of the United States. Within those three intervening decades, however, the collective habitats which comprise Louisiana's now fragile coastal zone have taken major hits from commercial/residential, oil & gas, and other industrial development, primarily in the form of coastal erosion exacerbated by these and other factors (Portnoy 1978, Spendelow and Patton 1988, Martin and Lester 1990, Green, et al. 2006). Moreover, during this same period, both geologic subsidence rates (Tornqvist et al. 2008) and mean sea-level (Tornqvist et al. 2002) have increased, along with significant tropical storm activity; all of which have combined to impact available marsh, barrier island, beach, and dredge spoil nesting habitat for waterbirds, especially seabirds, throughout the coastal zone of Louisiana. The primary objective of this publication is to detail those coastal Louisiana colonial seabird nesting sites for which we have reasonably accurate data, in a tabular, site-by-site format. All major survey (1976-2008) data of site-by-site seabird species counts, as well as several smaller data sets, referred to in the site history tables as “miscellaneous observations” obtained during the May-June seabird breeding period, are included. It is our hope that these data will provide a dependable foundation from which future colonial seabird nesting surveys might be planned and carried out, as well as showcase the importance of coastal Louisiana's seabird rookeries, and contribute to their conservation.

Louisiana↗

USGS2011

Organic contaminants, trace and major elements, and nutrients in water and sediment sampled in response to the Deepwater Horizon oil spill

Beach water and sediment samples were collected along the Gulf of Mexico coast to assess differences in contaminant concentrations before and after landfall of Macondo-1 well oil released into the Gulf of Mexico from the sinking of the British Petroleum Corporation's Deepwater Horizon drilling platform. Samples were collected at 70 coastal sites on the Gulf of Mexico between May 7 and July 7, 2010, to document baseline, "pre-landfall" conditions. A subset of these sites was resampled during October 4 to 14, 2010, after oil had made landfall on the Gulf of Mexico coast ("post-landfall") to determine if actionable concentrations of oil were present along shorelines. Few organic contaminants were detected in water; their detection frequencies were generally low and similar in pre-landfall and post-landfall samples. Only one organic contaminant, toluene, had significantly higher concentrations in post-landfall than pre-landfall water samples. No samples exceeded any human-health benchmarks, and only one sample exceeded an aquatic-life benchmark-the toxic-unit benchmark for polycyclic aromatic hydrocarbons (PAH) mixtures was exceeded in one post-landfall water sample from Louisiana. No exceedance was observed in the corresponding pre-landfall water sample at this site. In sediment, several PAHs were detected at over 20 percent of sites. Concentrations of 3 parent PAHs and 17 alkylated PAH groups were significantly higher in post-landfall samples than pre-landfall samples. One pre-landfall sample from Texas exceeded the sediment toxic-unit benchmark for PAH mixtures; this site was not sampled during the post-landfall period, so no comparison between sampling periods could be made. Twenty-seven percent of sediment samples exceeded empirical sediment-quality benchmarks (upper screening values) for PAHs, indicating these samples are in the probable-effect range. A higher percentage of post-landfall samples exceeded upper screening-value benchmarks (37 percent) than did pre-landfall samples (22 percent), but there was no significant difference in the proportion of samples exceeding one or more benchmarks between paired pre-landfall and post-landfall samples. Seven sites had the largest concentration differences between post-landfall and pre-landfall samples for fifteen alkylated PAHs. Five of these seven sites (1 site in Louisiana, 1 in Mississippi, and 3 in Alabama) were identified on the basis of diagnostic geochemical biomarkers as containing Macondo-1 oil in post-landfall sediments and tarballs, as described in a companion report by Rosenbauer and others (2010). For trace and major elements in water, analytical reporting levels for several elements were highly variable; after censoring to a common reporting threshold, concentrations were significantly different between pre-landfall and post-landfall samples for a few elements, all of which are elements in seawater. No human-health benchmarks were exceeded, although these were available for only two elements. Aquatic-life benchmarks for trace elements were exceeded in almost 50 percent of water samples. Post-landfall samples exceeded one or more acute benchmarks in 21 percent, and chronic benchmarks in 93 percent of samples, compared to 1 percent (acute) and 39 percent (chronic) for pre-landfall samples. The elements responsible for the most exceedances in post-landfall samples were boron (48 samples), copper (22), and manganese (12). Nickel and vanadium, which U.S. Environmental Protection Agency specifically identified as relevant to the oil spill, were responsible for exceedances in only one of the fifty-two post-landfall samples with exceedances. These results represent the minimum number of exceedances for several trace elements because a substantial number of samples could not be compared with benchmarks because the element was determined during only one sampling period (boron and vanadium) or the reporting level for the sample was higher than the applicable benchmark value (for example, cobalt, copper, lead, and nickel). The high and variable reporting levels for trace elements in water also precluded the statistical comparison between sampling periods of the proportion of samples exceeding benchmarks. For trace elements in whole (unsieved) sediment, 47 percent of samples exceeded empirical upper screening-value benchmarks, indicating these samples are in the probable-effect range. However, there was no significant difference in the proportion of samples exceeding one or more benchmarks between paired pre-landfall post-landfall samples. Benchmark exceedance frequencies could be conservatively high, because they are based on measurements of total trace-element concentrations, including the sediment matrix. In fine sediment (the less than 63-micrometer sediment fraction), one or more trace or major elements were anthropogenically enriched relative to national baseline values for U.S. streams for almost all sediment samples (123 of 124). Sixteen percent of sediment samples exceeded upper screening-value benchmarks for, and were enriched in, one or more of the element(s) barium (in 14 samples), vanadium (5), aluminum (3), manganese (3), arsenic (2), chromium (2), and cobalt (1). These samples, collected from Louisiana and Texas, were evenly divided between the pre-landfall (9 samples) and post-landfall (10 samples) periods. Considering all the information evaluated in this report, there were significant differences between pre-landfall and post-landfall samples for PAH concentrations in sediment. Pre-landfall and post-landfall samples did not differ significantly in concentrations or benchmark exceedances for most organics in water or trace elements in sediment. For trace elements in water, aquatic-life benchmarks were exceeded in almost 50 percent of samples, but the high and variable analytical reporting levels precluded statistical comparison of benchmark exceedances between sampling periods. Concentrations of several PAH compounds in sediment were significantly higher in post-landfall samples than pre-landfall samples, and five of seven sites with the largest differences in PAH concentrations also had diagnostic geochemical evidence of Deepwater Horizon Macondo-1 oil from Rosenbauer and others (2010).

Open-File Report↗

USGS2016

Migratory corridors of adult female Kemp’s ridley turtles in the Gulf of Mexico

For many marine species, locations of migratory pathways are not well defined. We used satellite telemetry and switching state-space modeling (SSM) to define the migratory corridor used by Kemp's ridley turtles (Lepidochelys kempii) in the Gulf of Mexico. The turtles were tagged after nesting at Padre Island National Seashore, Texas, USA from 1997 to 2014 (PAIS; n = 80); Rancho Nuevo, Tamaulipas, Mexico from 2010 to 2011 (RN; n = 14); Tecolutla, Veracruz, Mexico from 2012 to 2013 (VC; n = 13); and Gulf Shores, Alabama, USA during 2012 (GS; n = 1). The migratory corridor lies in nearshore Gulf of Mexico waters in the USA and Mexico with mean water depth of 26 m and a mean distance of 20 km from the nearest mainland coast. Migration from the nesting beach is a short phenomenon that occurs from late-May through August, with a peak in June. There was spatial similarity of post-nesting migratory pathways for different turtles over a 16 year period. Thus, our results indicate that these nearshore Gulf waters represent a critical migratory habitat for this species. However, there is a gap in our understanding of the migratory pathways used by this and other species to return from foraging grounds to nesting beaches. Therefore, our results highlight the need for tracking reproductive individuals from foraging grounds to nesting beaches. Continued tracking of adult females from PAIS, RN, and VC nesting beaches will allow further study of environmental and bathymetric components of migratory habitat and threats occurring within our defined corridor. Furthermore, the existence of this migratory corridor in nearshore waters of both the USA and Mexico demonstrates that international cooperation is necessary to protect essential migratory habitat for this imperiled species.

Gulf of Mexico↗

USGS1991

The status of the Red Hills salamander Phaeognathus hubrichti, Alabama, USA, 1976–1988

A total of 144 sites in the Red Hills Physiographic Province in south-central Alabama, USA, were surveyed in 1988 for burrows of the Red Hills salamander Phaeognathus hubrichti . Of 92 sites surveyed in 1976, no change occurred in the habitat at 54 sites, conditions improved at 19 sites and deteriorated at 18 sites following selective or clear cutting. An additional 14 of 52 sites not surveyed in 1976 were adversely affected by logging. Burrows were most often found on high ( x ̄ = 17 m "> x̄= 17 m ), steep ( x ̄ = 50° "> x̄= 50° ), uncut slopes containing a high soil moisture content ( x ̄ = 57% "> x̄= 57% ) and full tree canopy. Slope angle and soil pH did not affect burrow abundance. Burrow openings averaged 10·9 mm high × 15·3 mm wide. Burrow angle was negatively correlated with burrow width and slope angle but low r 2 values indicate that little of the variation was explained by these variables. Burrows were most often found on the upper two-thirds of slopes; burrows on slopes affected by cutting were found in the middle of the slope where they were less prone to disturbance and desiccation. Although most timber companies claim to no longer cut steep slopes in order to protect salamanders, detrimental forestry practices are still occuring. In some instances, Red Hills salamanders survive selective and clear cutting, but the persistence and viability of affected populations remain unknown. Suggestions are made to reduce impacts from forestry operations. Acquisition of 25 sites containing viable salamander populations and retention as a threatened species under United States federal law are recommended.

Alabama↗