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At least 703 records · Page 39Linked to original sources
USGS2022

Modeling protected species distributions and habitats to inform siting and management of pioneering ocean industries: A case study for Gulf of Mexico aquaculture

Marine Spatial Planning (MSP) provides a process that uses spatial data and models to evaluate environmental, social, economic, cultural, and management trade-offs when siting (i.e., strategically locating) ocean industries. Aquaculture is the fastest-growing food sector in the world. The United States (U.S.) has substantial opportunity for offshore aquaculture development given the size of its exclusive economic zone, habitat diversity, and variety of candidate species for cultivation. However, promising aquaculture areas overlap many protected species habitats. Aquaculture siting surveys, construction, operations, and decommissioning can alter protected species habitat and behavior. Additionally, aquaculture-associated vessel activity, underwater noise, and physical interactions between protected species and farms can increase the risk of injury and mortality. In 2020, the U.S. Gulf of Mexico was identified as one of the first regions to be evaluated for offshore aquaculture opportunities as directed by a Presidential Executive Order. We developed a transparent and repeatable method to identify aquaculture opportunity areas (AOAs) with the least conflict with protected species. First, we developed a generalized scoring approach for protected species that captures their vulnerability to adverse effects from anthropogenic activities using conservation status and demographic information. Next, we applied this approach to data layers for eight species listed under the Endangered Species Act, including five species of sea turtles, Rice’s whale, smalltooth sawfish, and giant manta ray. Next, we evaluated four methods for mathematically combining scores (i.e., Arithmetic mean, Geometric mean, Product, Lowest Scoring layer) to generate a combined protected species data layer. The Product approach provided the most logical ordering of, and the greatest contrast in, site suitability scores. Finally, we integrated the combined protected species data layer into a multi-criteria decision-making modeling framework for MSP. This process identified AOAs with reduced potential for protected species conflict. These modeling methods are transferable to other regions, to other sensitive or protected species, and for spatial planning for other ocean-uses.

PLoS ONE↗
USGS2017

Developing an effective Agassiz's Desert Tortoise monitoring program: Final report to the Coachella Valley Conservation Commission

Agassiz’s desert tortoise (Gopherus agassizii) is a conservation-reliant species with populations north and west of the Colorado River protected as threatened under the Endangered Species Act (Averill-Murray et al. 2012). Since it was listed under this category in 1990, a great deal has been learned about the natural history of the species, and it is now one of the best-studied turtles in the United States (Lovich and Ennen 2013). However, the accumulated body of scientific data available for the species has not yet been translated into recovery or delisting of the species. Successful conservation of any species requires knowledge of their natural history and how vital rates affect their ability to maintain stable populations in the face of natural and anthropogenic stresses. Agassiz’s desert tortoises occur from southwestern Utah to near the Mexican border in California – a distance of over 450 km – but population densities vary greatly across this immense landscape (U.S. Fish and Wildlife Service 2015). Tortoises occur in the Sonoran Desert of California, including the eastern and western ends of the Coachella Valley, where it is one of 27 species covered under the Coachella Valley Multiple Species Habitat Conservation Plan and Natural Community Conservation Plan (CVMSHCP/NCCP). The southern portion of Joshua Tree National Park (JTNP) lies within this 1.1 million acre planning area, and was predicted to be an area of low-density tortoise populations using habitat suitability modeling (Barrows 2011). JTNP is near the southern distributional limit of G. agassizii, yet very little has been published regarding the ecology of tortoises in the Sonoran Desert of California. Reproductive output is an important gross measure of the ability of a population to persist. When integrated with data on fertility and survivorship, this information forms a foundation for assessing population status and formulating effective management strategies (e.g., Congdon et al. 1993, 1994), especially for imperiled species. One aspect of the biology of G. agassizii that has been particularly well-studied is reproductive output. However, most of what we know about this topic comes from research in the Mojave Desert portion of the species’ range (Ernst and Lovich 2009). Comparatively little has been published on the reproductive ecology of populations living in the Sonoran Desert ecosystem of California. Publications by Lovich et al. (1999, 2011, 2012, 2014, 2015) constitute the main body of literature on desert tortoise reproductive ecology in the Sonoran Desert of California, with one study population located at the western end of the CVMSHCP/NCCP area. Collecting data on Agassiz’s desert tortoise ecology in the Sonoran Desert ecosystem is important due to significant differences between the two adjacent desert ecosystems, especially the timing and amounts of annual precipitation, and their potential effects on reproductive output (e.g., Lovich et al. 5 2015). There are also differences in the vulnerability of tortoises to the effects of a warming, drying climate between the two deserts (Barrows 2011; Zylstra et al. 2012). The overall goal of this study was to collect data on demography, reproductive output, and genetic affinities at a study site in the Sonoran Desert portion of JTNP in the eastern end of the CVMSHCP/NCCP area. Specific objectives included: 1) Collect data to establish baselines on tortoise populations and/or their habitat suitability in core habitat within the CVNCCP area, including biotic and abiotic variables affecting persistence of tortoise populations; 2) Compare and contrast with data collected on desert tortoises at USGS/BLM study site near Palm Springs over 16 years; 3) Support long-term modeling efforts needed to determine tortoise population viability; 4) Refine modeled relationships with identified threats such as fire, invasive species and climate change; and 5) Prioritize adaptive management needs for the desert tortoise in and beyond the CVNCCP area. The data from this study will aid in determining baseline estimates of the desert tortoise population size within the planning area as well as establish a marked population of Agassiz’s desert tortoises for future monitoring. Data will be integrated with habitat modeling in order to refine model output. Genetic data will be collected on both the north and south sides of Interstate 10 to determine the potential effects of habitat fragmentation and genetic mixing. Analyses are ongoing and results beyond those presented in this report will be published in peer-reviewed scientific journals following inclusion of additional data collected on the south side of Shavers Valley in 2017-2018.

Report↗
USGS2003

Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota: Integrating hydrologic and biological processes using sediment perfusion cores

Inorganic N transformations were examined in streambed sediments from the Shingobee River using sediment perfusion cores. The experimental design simulated groundwater-stream water mixing within sediment cores, which provided a well-defined one-dimensional representation of in situ hydrologic conditions. Two distinct hydrologic and chemical settings were preserved in the sediment cores: the lowermost sediments, perfused with groundwater, remained anaerobic during the incubations, whereas the uppermost sediments, perfused with oxic water pumped from the overlying water column, simulated stream water penetration into the bed. The maintenance of oxic and anoxic zones formed a biologically active aerobic-anaerobic interface. Ammonium (NH4+) dissolved in groundwater was transported conservatively through the lower core zone but was removed as it mixed with aerated recycle water. Concurrently, a small quantity of nitrate (NO3-) equaling ???25% of the NH4+ loss was produced in the upper sediments. The NH4+ and NO3- profiles in the uppermost sediments resulted from coupled nitrification-denitrification, because assimilation and sorption were negligible. We hypothesize that anaerobic microsites within the aerated upper sediments supported denitrification. Rates of nitrification and denitrification in the perfusion cores ranged 42-209 and 53-160 mg N m-2 day-1, respectively. The use of modified perfusion cores permitted the identification and quantification of N transformations and verified process control by surface water exchange into the shallow hyporheic zone of the Shingobee River.

Minnesota↗
USGS2024

The LTAR cropland Common Experiment at Lower Chesapeake Bay

The Lower Chesapeake Bay (LCB) Long-Term Agroecosystem Research (LTAR) Common Experiment (CE) located in Beltsville, MD, focuses on research of concern to producers of the major regional crops, which are corn ( Zea mays L.), soybean [ Glycine max (L.) Merr.], wheat ( Triticum aestivum L.), and various forage species. Livestock production in the region includes broiler and laying chickens ( Gallus gallus domesticus L.) and dairy and beef cattle ( Bos taurus L.). The LCB region is among the most heavily populated in the United States. Urban development pressure is high for both farms and natural areas. The need to restore Chesapeake Bay water quality is a major influence on regional agricultural practices. Conservation practices such as cover cropping, no-till agriculture, and nutrient management planning are more common in the region compared to nationally. However, farmers still face management challenges implementing practices that address water quality and the rise of herbicide-resistant weeds. Researchers at the LCB site recognize the need to protect the Chesapeake and Delaware Bays and maintain farmer profitability. The LCB CE compares a 3-year crop rotation system featuring alternative crop management (cover crop intensification, crop rotation diversification, and integrated weed management [IWM]) with a prevailing 2-year system (no cover crops and no IWM), both under continuous no-tillage, to identify the optimal balance to promote the sustainability of regional cropping systems. The LTAR LCB site provides data-driven tools and solutions to support farmers in the mid-Atlantic region.

Delaware, Maryland, New Jersey, Pennsylvania, Virg↗
USGS2025

Population and outmigration characteristics of juvenile Bull Trout in a montane ecosystem

Bull Trout Salvelinus confluentus is a federally threatened species in the conterminous United States. Although some populations are stable or increasing, Bull Trout in the United States Fish and Wildlife Service's designated Coeur d'Alene Core Area in Idaho have experienced substantial declines in abundance. Today, the remaining extant population in the Coeur d'Alene Core Area returns to the headwaters of the St. Joe River to spawn. The population has been monitored annually since 1992 using spawning ground surveys, but little is known about early life stages in the system. The objective of our research was to evaluate the distribution and abundance, age and size structure, habitat associations, and outmigration characteristics of juvenile Bull Trout in the upper St. Joe River basin. In 2022–2023, we sampled 200 stream reaches on the mainstem St. Joe River and four tributaries (Heller, Medicine, Sherlock, and Wisdom creeks). We sampled 1,529 Bull Trout varying in length from 29−257 mm in total length (TL; mean ± SD; 108 ± 44 mm). Population estimates suggested there were 1,841 (95% CI = 1,188−2,494) juvenile Bull Trout in the study area in 2022 and 2,388 (1,646−3,130) in 2023. Regression models indicated that abundance was positively related to canopy cover, amount of large substrate, amount of large woody debris, and amount of gravel, and negatively related to water temperature. We tagged 1,142 fish with passive integrated transponders (PIT) and detected 163 (14%) of these fish using a stationary tag array that was operational during June or July through October. Peak autumn outmigration occurred in October of both sampling years. Of the fish that were detected moving, age varied from 1−4 years, but age-1 and age-2 fish were more commonly detected moving downstream compared to other age classes. This study provides important information on the ecology of juvenile Bull Trout that can be used to guide conservation and recovery efforts in montane ecosystems. Furthermore, juvenile Bull Trout in the upper St. Joe River basin were present at similar densities and experienced growth rates similar to more robust adfluvial populations (e.g., Lake Pend Oreille, Idaho), thereby indicating that factors contributing to the low abundance of adults are not likely occurring in the headwaters of the St. Joe River. Thus, conservation efforts may be more successful if they are focused on the migration corridor and Coeur d'Alene Lake.

Idaho↗
USGS2018

Greater sage-grouse science (2015–17)—Synthesis and potential management implications

Executive Summary The greater sage-grouse ( Centrocercus urophasianus ; hereafter called “sage-grouse”), a species that requires sagebrush (Artemisia spp.), has experienced range-wide declines in its distribution and abundance. These declines have prompted substantial research and management investments to improve the understanding of sage-grouse and its habitats and reverse declines in distribution and population numbers. Over the past two decades, the U.S. Fish and Wildlife Service (USFWS) has responded to eight petitions to list the sage-grouse under the Endangered Species Act of 1973, with the completion of the most recent listing determination in September 2015. At that time, the USFWS determined that the sage-grouse did not warrant a listing, primarily because of the large scale science-based conservation and planning efforts completed or started by Federal, State, local agencies, private landowners, and other entities across the range. The planning efforts culminated in the development of the 2015 Bureau of Land Management (BLM) and U.S. Forest Service Land Use Plan Amendments, which provided regulatory certainty and commitment from Federal land-management agencies to limit, mitigate, and track anthropogenic disturbance and implement other sage-grouse conservation measures. After these policy decisions, the scientific community has continued to refine and expand the knowledge available to inform implementation of management actions, increase the efficiency and effectiveness of those actions, and continue developing an overall understanding of sage-grouse populations, habitat requirements, and their response to human activity and other habitat changes. The development of science has been driven by multiple prioritization documents including the “Greater Sage-Grouse National Research Strategy” (Hanser and Manier, 2013) and, most recently, the “Integrated Rangeland Fire Management Strategy Actionable Science Plan” (Integrated Rangeland Fire Management Strategy Actionable Science Plan Team, 2016). In October 2017, after a review of the 2015 Federal plans relative to State sage-grouse plans, in accordance with Secretarial Order 3353, the BLM issued a notice of intent to consider whether to amend some, all, or none of the 2015 land use plans. At that time, the BLM requested the U.S. Geological Survey (USGS) to inform this effort through the development of an annotated bibliography of sage-grouse science published since January 2015 and a report that synthesized and outlined the potential management implications of this new science. Development of the annotated bibliography resulted in the identification and summarization of 169 peer-reviewed scientific publications and reports. The USGS then convened an interagency team (hereafter referred to as the “team”) to develop this report that focuses on the primary topics of importance to the ongoing management of sage-grouse and their habitats. The team developed this report in a three-step process. First, the team identified six primary topic areas for discussion based on the members’ collective knowledge regarding sage-grouse, their habitats, and threats to either or both. Second, the team reviewed all the material in the “Annotated Bibliography of Scientific Research on Greater Sage-Grouse Published since January 2015” to identify the science that addressed the topics. Third, team members discussed the science related to each topic, evaluated the consistency of the science with existing knowledge before 2015, and summarized the potential management implications of this science. The six primary topics identified by the team were: Multiscale habitat suitability and mapping tools Discrete anthropogenic activities Diffuse activities Fire and invasive species Restoration effectiveness Population estimation and genetics

Open-File Report↗
USGS2017

Predicting wading bird and aquatic faunal responses to ecosystem restoration scenarios

In large-scale conservation decisions, scenario planning identifies key uncertainties of ecosystem function linked to ecological drivers affected by management, incorporates ecological feedbacks, and scales up to answer questions robust to alternative futures. Wetland restoration planning requires an understanding of how proposed changes in surface hydrology, water storage, and landscape connectivity affect aquatic animal composition, productivity, and food-web function. In the Florida Everglades, reintroduction of historical hydrologic patterns is expected to increase productivity of all trophic levels. Highly mobile indicator species such as wading birds integrate secondary productivity from aquatic prey (small fishes and crayfish) over the landscape. To evaluate how fish, crayfish, and wading birds may respond to alternative hydrologic restoration plans, we compared predicted small fish density, crayfish density and biomass, and wading bird occurrence for existing conditions to four restoration scenarios that varied water storage and removal of levees and canals (i.e. decompartmentalization). Densities of small fish and occurrence of wading birds are predicted to increase throughout most of the Everglades under all restoration options because of increased flows and connectivity. Full decompartmentalization goes furthest toward recreating hypothesized historical patterns of fish density by draining excess water ponded by levees and hydrating areas that are currently drier than in the past. In contrast, crayfish density declined and species composition shifted under all restoration options because of lengthened hydroperiods (i.e. time of inundation). Under full decompartmentalization, the distribution of increased prey available for wading birds shifted south, closer to historical locations of nesting activity in Everglades National Park.

Restoration Ecology↗
USGS2023

Annotated bibliography of scientific research on greater sage-grouse published from October 2019 to July 2022

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey (USGS) created a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here and built on to incorporate new information. The greater sage-grouse (Centrocercus urophasianus; hereafter “GRSG”) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” under the Endangered Species Act was in part a result of a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the USGS has reviewed and summarized the scientific literature published since January 1, 2015. Our most recent GRSG literature summary was published in 2020 (Carter and others, 2020) and included products published through October 2, 2019. Here, we consider products published between October 2, 2019, and July 21, 2022. We compiled and summarized peer-reviewed journal articles, data products, and formal technical reports (such as U.S. Department of Agriculture Forest Service General Technical Reports and USGS Open-File Reports) on greater sage-grouse. We first systematically searched three reference databases and three government databases using the search phrase “greater sage-grouse.” We refined the initial list of products by removing (1) duplicates, (2) publications not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (3) products for which greater sage-grouse was not a research focus or the study did not present new data or findings about greater sage-grouse. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified management topics addressed by each product; for example, species and population characteristics. We also identified projects that provided new geospatial data. The review process for this annotated bibliography included two initial internal colleague reviews of each summary, requesting input on each summary from an author of the original publication, and formal peer review. Our initial searches resulted in 221 total products, of which 147 met our criteria for inclusion. Across products summarized in the annotated bibliography, broad-scale habitat characteristics, behavior or demographics, site-scale habitat characteristics, habitat selection, and population estimates or targets were the most commonly addressed management topics. The online version of this bibliography, which will be available on the Science for Resource Managers tool ( https://apps.usgs.gov/science-for-resource-managers ), will be searchable by topic, location, and year, and will include links to each original publication. The studies compiled and summarized here may inform planning and management actions that seek to maintain and restore sagebrush landscapes and GRSG populations across the GRSG range.

Open-File Report↗
USGS2010

The use of scenario analysis to assess water ecosystem services in response to future land use change in the Willamette River Basin, Oregon

Human pressures on the natural resources of the United States have resulted in many unintended changes in our ecosystems, e.g., loss of biodiversity, habitat degradation, increases in the number of endangered species, and increases in contamination and water pollution. Environmental managers are concerned about broad-scale changes in land use and landscape pattern and their cumulative impact on hydrologic and ecological processes that affect stream conditions. The type of land use and land cover has direct consequences for most ecosystem services, including water quantity and water quality, erosion control, and biodiversity. As human pressure continues to increase, ecosystem services worldwide are projected to suffer continued loss and degradation, thus reducing the capacity of ecosystems to provide essential goods and services that contribute to human well-being (MEA 2005). The ability to assess, report, and forecast the life support functions of ecosystems is absolutely critical to our capacity to make informed decisions which will maintain the sustainable nature of our environmental services and secure these resources into the future. This study presents an integrated approach to identify areas with potential water quality problems as a result of land cover change projected by stakeholders within a moderately large river basin in the Pacific Northwest (USA). A process-based hydrologic watershed model was used to examine the contribution of land use/land cover to sediment yield, and nitrate and phosphorous loadings, and identify subwatersheds within the Willamette River basin that would be most affected in the year 2050 relative to three possible future scenarios which include inherent differences related to conservation, existing planning trends, and open development. Thus, the objective of this study was to evaluate the effects of alternative future scenarios that describe varying degrees of urban development and human use on hydrological response related to water quality. Results of this study suggest that the amount of forest along streams and agriculture consistently explained a high percentage of variation in nutrients. The AGWA-SWAT model was used to simulate change in sediment yield, nitrate and phosphorus transported with surface runoff for the three future scenarios. With regard to nitrate, the greatest increase was associated with subwatersheds with agricultural land use and urban areas. Although the model predicted some improvement in basin headwaters for all scenarios, nitrate loadings are expected to decrease under the conservation scenario. The largest decrease was observed in the Coast Range. With regard to phosphorous loadings, the lowest reduction was observed in subwatersheds draining predominantly forest areas. The greatest increase was observed under the open development scenario in subwatersheds with agricultural land use. Urbanization and agriculture are presumed to be the major environmental stressors affecting watershed condition of the Willamette River Basin.

Oregon↗
USGS2016

Cryptic invasion of Northern Leopard Frogs ( Rana pipiens ) across phylogeographic boundaries and a dilemma for conservation of a declining amphibian

Anthropogenic introduction of species is a major contributor to loss of biodiversity. Translocations within the range of a species are less frequently recognized, but have the potential for negative effects as well. Genetic mixing may lead to loss of local adaptations or further decline through outbreeding depression. These cryptic invasions may be quite difficult to recognize, but genetic tools can be used to recognize and monitor such intraspecific introductions. Conversely, translocations within species can be an important conservation tool to reduce inbreeding depression and replace lost genetic diversity. Thus, cryptic invasions can be either an aid or a hindrance to conservation efforts. We tested for the presence of non-native genotypes and assessed the extent and nature of introgression in populations of Northern Leopard Frog ( Rana pipiens ) in the southwestern US, where populations have declined to a few remnant populations. The most abundant and diverse complex of populations in the region contained a mitochondrial haplotype that was not native to the western US, probably resulting from the introduction of released pets, laboratory animals, or release during fish stocking. These non-native haplotypes were well integrated into a large complex of ponds and lakes, contributing to high genetic diversity in this area. Logistically, the geographic extent of non-native genetic influence within this population precludes eliminating or controlling the non-native component of this population. We recommend assessing the progress and fate of the introgression over time—along with population fitness parameters—to determine whether this introduction is beneficial or detrimental to population persistence. Meanwhile, translocations from nearby locations with similar environmental conditions have the best prospects for avoiding problems with outbreeding depression in other declining populations and will also most effectively preserve regional genetic diversity.

Biological Invasions↗
USGS2002

Threats to desert tortoise populations: a critical review of the literature

Decision in resource management are generally based on a combination of sociopolitical, economic, and environmental factors, and may be biased by personal values. These three components often contradict each other resulting in controversy. Controversies can usually be reduced when solid scientific evidence is used to support or refute a decision. However, it is important to recognize that data often do little to alter antagonists' positions when differences in values are the bases if the dispute. But, supporting data can make the decision more defensible, both legally and ethically, especially if the data supporting all opposing viewpoints are included in the decision-making process. Resource management decisions must be made using the best scientific information currently available. However, scientific data vary in two important measures of quality: reliability and validity. The reliability of the data is a measure of the degree to which the observations or conclusion can be repeated. Validity of the data is a measure of the degree to which the observation or conclusion reflects what actually occurs in nature. How the data are collected strongly affects the reliability of validity of ecological conclusions that can be made. Research data potentially relevant to management come from different sources, and the source often provides clues to the reliability and, to a certain extent, validity of data. Understanding the quality of data being used to make management decisions helps to separate the philosophical or value-based aspects of arguments from the objective ones, thus helping to clarify the decisions and judgments that need to be made. The West Mojave Plan is a multispecies, bioregional plan for the management of natural resources within a 9.4 million-acre area of the Mojave Desert in California. The plan addresses the legal requirements for the recovery of the desert tortoise ( Gopherus agazzizii ), a threatened species, but also covers an additional approximately 80 species of plants and animals assigned special status by the Bureau of Land Management, U. S. Fish and Wildlife Service, and California Department of Fish and Game. Within the planning area, 28 separate jurisdictions (counties, cities, towns, military installations, etc.) seek programmatic prescriptions that will facilitate streamlined environmental review, result in expedited authorization for development projects, and protect listed and unlisted species into the foreseeable future to avoid or minimize conflicts between proposed development and species' conservation and recovery. All of the scientific data available concerning the biology and management of these approximately 80 species and their habitats must be evaluated to develop a scientifically credible plan. This document provides an overview and evaluation of the knowledge of the major threats to the persistence and recovery of desert tortoise populations. I was specifically asked to evaluate the scientific veracity of the data and reports available. I summarize the data presently available with particular focus on the West Mojave Desert, evaluate the scientific integrity of the data. and identify major gaps in the available knowledge. I do not attempt to provide in-depth details on each study or threat; for more details I encourage the reader to consult the individual papers or reports city throughout this report (many of which are available at most university libraries and at the West Mojave Plan office in Riverside, California). I also do not attempt to characterize or evaluate the past or present management actions, except where they have direct bearing on evaluation of threats, nor do I attempt, for the most part, to acquire, generate, or evaluate new or existing, but uninterpreted data.

California↗
USGS2026

Ecology of reintroduced Rocky Mountain bighorn sheep in Dinosaur National Monument

Translocations have been widely used to restore and conserve bighorn sheep ( Ovis canadensis ) populations in North America. Some translocations have been successful, but many populations remain small and genetically isolated. Population structure can influence the viability and long-term success of reintroductions. Social ungulates often function as interconnected subpopulations (metapopulations); however, few studies evaluate subpopulation sizes, connectivity, and genetic diversity within metapopulations. To address this gap, we conducted a comprehensive study of a reintroduced Rocky Mountain bighorn sheep ( Ovis canadensis canadensis ) population in Dinosaur National Monument in Colorado and Utah, USA, between 2006–2020. We analyzed global positioning system (GPS) radio-collar data, genetic samples, and results of health testing to evaluate abundance, distribution, genetic structure and diversity, habitat use, movement and connectivity, and presence of or exposure to respiratory pathogens. We integrated these analyses to evaluate the outcomes of a reintroduction effort that began in 1952, over 70 years ago, and to inform management decisions in Dinosaur National Monument. We also provide a framework for evaluating metapopulation processes, including a non-invasive approach that links genetic structure with Bayesian spatial capture-recapture analyses to estimate subpopulation sizes. Despite models indicating continuous suitable habitat, we found a spatially structured population with at least 4 subpopulations with constrained connectivity. Evidence from step selection and density analyses suggested that movement among subpopulations may be limited by semi-permeable barriers including rivers and human disturbance, which could contribute to maintenance of spatial structure over time. In 2006, antibody to Mycoplasma ovipneumoniae was detected in all geographically and genetically distinct subpopulations. Widespread clinical signs of disease and a confirmed exposure to M. ovipneumoniae in 2019 indicate a long-term disease challenge. Proximity to domestic sheep creates repeated opportunities for introduction of new M. ovipneumoniae strains. We estimated abundance in 2019 at 109 (95% CrI = 87–133), composed of subpopulations ranging from 18–39 animals (95% CrIs from 11–50). Genetic diversity was relatively high compared to other reintroduced and native Rocky Mountain bighorn sheep populations, which is likely a consequence of multiple translocations from different sources. Three of 4 subpopulation centers generally aligned with the locations of original translocation release sites. Persistence in the presence of pathogens may be facilitated by metapopulation structure and moderately high genetic diversity. Conversely, metapopulation structure can also facilitate pathogen persistence. Our approach offers a path to advance understanding of the population ecology of reintroduced bighorn sheep and can inform effective conservation and management of their populations.

Colorado, Wyoming↗
USGS2002

Toxicological assessment of aquatic ecosystems: application to watercraft contaminants in shallow water environments

Recreational boating and personal watercraft use have the potential to adversely impact shallow water systems through contaminant release and physical disturbance of bottom sediments. These nearshore areas are often already degraded by surface runoff, municipal and industrial effluents, and other anthropogenic activities. For proper management, information is needed on the level of contamination and environmental quality of these systems. A number of field and laboratory procedures can be used to provide this much needed information. Contaminants, such as metals, pesticides, polychlorinated biphenyls and polycyclic aromatic hydrocarbons, entering aquatic environments generally attach to particulate matter that eventually settles and becomes incorporated into the bottom sediments. Because bottom sediments serve as a sink and as a source for contaminants, environmental assessments generally focus on this matrix. While contaminant residues in sediments and sediment pore waters can reflect environmental quality, characteristics of sediment (redox potential, sediment/pore-water chemistry, acid volatile sulfides, percent organic matter, and sediment particle size) influence their bioavailability and make interpretation of environmental significance difficult. Comparisons of contaminant concentrations in pore water (interstitial water) and sediment with water quality criteria and sediment quality guidelines, respectively, can provide insight into potential biological effects. Laboratory bioaccumulation studies and residue concentrations in resident or caged biota also yield information on potential biological impacts. The usefulness of these measurements may increase as data are developed relating in-situ concentrations, tissue residue levels, and biological responses. Exposure of test organisms in situ or to field-collected sediment and pore water are additional procedures that can be used to assess the biological effects of contaminants. A battery of tests using multi-species and/or various life stages with different sensitivities to contaminants may offer a more conservative assessment of toxicity than single species testing. Using a ?weight of evidence? approach, the Sediment Quality Trial produces a robust evaluation of habitat quality and includes a measure of contaminant concentrations in the sediment, an assessment of sediment/pore-water toxicity to laboratory animals, and an evaluation of in situ biological assemblages. Field and laboratory procedures are available that can be used to ascertain habitat quality, identify contaminants causing environmental degradation and delineate aquatic systems requiring mitigation of protective efforts. These studies provide the scientific data that are integral to developing an environmental risk assessment of contaminants from watercraft use in shallow water systems.

Book chapter↗
USGS2025

Principles of riverscape health

Riverscapes are the integration of terrestrial and aquatic systems from headwaters to estuaries that provide habitat and ecosystem benefits when in good health. However, current riverscape degradation is pervasive, impairing the function and resulting benefits of these systems. Healthy riverscapes are adaptive and some can ‘heal’ after disturbance with minimal to no human assistance. As riverscape health is threatened, a need exists to address current degradation and understand the potential for riverscape restoration—concisely communicating what comprises healthy riverscapes is essential to direct limited resources and increase efficacy of restoration and conservation efforts. Healthy riverscapes have (i) space to interact within their valley bottom; (ii) natural flow, sediment, and vegetation regimes appropriate to the biophysical setting and river type; and (iii) structural forcing to support diversity and that creates varied residence times for water, sediment, and vegetation. These three principles are grounded in interdisciplinary science and lessons from riverscape scientists and restoration practitioners across the world. Understanding the context, anthropogenic influences, boundary conditions, and legacy effects influencing riverscapes is essential for the appropriate application of these principles in pursuit of achieving riverscape health. Emphasizing a holistic, biogeomorphic view of riverscapes through these principles can guide policies, restoration actions, and monitoring frameworks that ensure that riverscapes remain capable of accommodating and adjusting to disturbances while continuing to support biodiversity and human benefits.

WIREsWATER (Wiley Interdisciplinary Reviews Primer↗
USGS2011

Ecosystem services provided by playas in the High Plains: potential influences of USDA conservation programs

Playas are shallow depressional wetlands and the dominant wetland type in the non-glaciated High Plains of the United States. This region is one of the most intensively cultivated regions in the Western Hemisphere, and playas are profoundly impacted by a variety of agricultural activities. Conservation practices promoted through Farm Bills by the U.S. Department of Agriculture (USDA) that influence playas and surrounding catchments impact ecosystem functions and related services provided by wetlands in this region. As part of a national assessment, we review effects of agricultural cultivation and effectiveness of USDA conservation programs and practices on ecosystem functions and associated services of playas. Services provided by playas are influenced by hydrological function, and unlike other wetland types in the United States, hydrological function of playas is impacted more by accumulated sediments than drainage. Most playas with cultivated catchments have lost greater than 100% of their volume from sedimentation causing reduced hydroperiods. The Conservation Reserve Program (CRP) has the largest influence on playa catchments (the High Plains has >2.8 million ha), and associated sedimentation, of any USDA program. Unfortunately, most practices applied under CRP did not consider restoration of playa ecosystem function as a primary benefit, but rather established dense exotic grass in the watersheds to reduce soil erosion. Although this has reduced soil erosion, few studies have investigated its effects on playa hydrological function and services. Our review demonstrates that the Wetlands Reserve Program (WRP) has seldom been applied in the High Plains outside of south-central Nebraska. However, this is the primary program that exists within the USDA allowing conservation practices that restore wetland hydrology such as sediment removal. In addition to sediment removal, this practice has the greatest potential effect on improving hydrologic function by reducing sedimentation in vegetative buffer strips. We estimate that a 50-m native-grass buffer strip could improve individual playa hydroperiods by up to 90 days annually, enhancing delivery of most natural playa services. The potential for restoration of playa services using USDA programs is extensive, but only if WRP and associated practices are promoted and playas are considered an integral part of CRP contracts.

Colorado, Kansas, Nebraska, New Mexico, Oklahoma, ↗
USGS2023

Annotated bibliography of scientific research on Gunnison sage-grouse published from January 2005 to September 2022

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey is creating a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate the integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here to frame the presentation. Centrocercus minimus (Gunnison sage-grouse; hereafter GUSG) has been a focus of scientific investigation since the early 2000s. The U.S. Fish and Wildlife Service listed GUSG as threatened under the Endangered Species Act in 2014 because of declining populations and increasing habitat loss. The U.S. Fish and Wildlife Service, Bureau of Land Management, and Colorado Parks and Wildlife have sought to increase the conservation of this species by adapting management and recovery plans to reduce threats and increase population resiliency. GUSG are studied less than the closely related Centrocercus urophasianus (greater sage-grouse); however, research efforts have recently increased to understand the life history, genetics, and habitat suitability of this sagebrush-obligate species. We compiled and summarized peer-reviewed journal articles, data products, and formal technical reports (such as U.S. Department of Agriculture Forest Service General Technical Reports and U.S. Geological Survey Open-File Reports) on GUSG, published between January 2005 and September 2022. We first systematically searched three reference databases and three government databases using the following search phrases: “Gunnison sage-grouse” or “lesser sage-grouse” or “Gunnison grouse” or “Gunnison sage grouse” or “lesser sage grouse” or “ Centrocercus minimus .” We refined the initial list of products by removing (1) duplicates, (2) publications that were not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (3) products that did not have GUSG as a research focus or products that did not present new data or findings about GUSG. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified the management topics (for example, population estimates or targets, habitat, and management efforts) addressed by each product. We also noted which publications included new geospatial data. The review process for this annotated bibliography included two initial internal colleague reviews of each summary, requesting input on each summary from an author of the original publication, and a formal peer review. Our initial searches resulted in 80 total products, of which 63 met our criteria for inclusion of which 53 were products that had not been summarized before. Across products summarized in the annotated bibliography, broad-scale habitat characteristics; population estimates or targets; behavior or demographics; and genetics were the most commonly addressed management topics. The bibliographies are available on the Science for Resource Managers tool ( https://apps.usgs.gov/science-for-resource-managers ) and are searchable by topic, location, and year, and the search tool includes links to each original publication. The studies compiled and summarized in this annotated bibliography may inform planning and management actions that seek to maintain and restore sagebrush landscapes and GUSG populations across the GUSG range.

Colorado↗
USGS2004

Monitoring programs need to take into account imperfect species detectability

Biodiversiry monitoring is important to identify biological units in need of conservation and to check the effectiveness of conservation actions. Programs generally monitor species richness and its changes (trend). Usually, no correction is made for imperfect species detectability. Instead, it is assumed that each species present has the same probability of being recorded and that there is no difference in this detectability across space and time, e.g. among observers and habitats. Consequently, species richness is determined by enumeration as the sum of species recorded. In Switzerland, the federal government has recently launched a comprehensive program that aims at detecting changes in biodiversity at all levels of biological integration. Birds are an important part of that program. Since 1999, 23 visits per breeding season are made to each of >250 1 km2 squares to map the territories of all detected breeding bird species. Here, we analyse data from three squares to illustrate the use of capture-recapture models in monitoring to obtain detectability-corrected estimates of species richness and trend. Species detectability averaged only 85%. Hence an estimated 15% of species present remained overlooked even after three visits. Within a square, changes in detectability for different years were of the same magnitude when surveys were conducted by the same observer as when they were by different observers. Estimates of trend were usually biased and community turnover was overestimated when based on enumeration. Here we use bird data as an illustration of methods. However, species detectability for any taxon is unlikely ever to be perfect or even constant across categories to be compared. Therefore, monitoring programs should correct for species detectability.

Basic and Applied Ecology↗
USGS2021

A new species of tree hyrax (Procaviidae: Dendrohyrax) from West Africa and the significance of the Niger–Volta interfluvium in mammalian biogeography

Tree hyraxes ( Dendrohyrax ) are one of only three genera currently recognized in Procaviidae, the only extant family in the mammalian order Hyracoidea. Their taxonomy and natural history have received little attention in recent decades. All tree hyrax populations of Guineo-Congolian forests of Africa are currently treated as a single species, Dendrohyrax dorsalis , the western tree hyrax, but many other groups of mammals distributed across this large biome have been shown to consist of several different species, each restricted to a distinct biogeographical region. We analysed variation in loud-call structure, pelage colour, skull morphometrics and mitochondrial genomes in populations across much of the range of D. dorsalis . This integrative approach uncovered considerable cryptic variation. The population found between the Niger and Volta Rivers in West Africa is particularly distinctive, and we describe it herein as a new species. Our study highlights the need to revise the taxonomy of the genus Dendrohyrax in light of modern systematics and current understanding of its distribution. It also adds to a growing body of evidence that the Niger–Volta interfluvium has a distinct meso-mammal fauna. Unfortunately, the fauna of this region is under major threat and warrants much greater conservation attention.

Zoological Journal of the Linnean Society↗