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At least 703 records · Page 39Linked to original sources

Practical guidance on characterizing availability in resource selection functions under a use-availability design

Habitat selection is a fundamental aspect of animal ecology, the understanding of which is critical to management and conservation. Global positioning system data from animals allow fine-scale assessments of habitat selection and typically are analyzed in a use-availability framework, whereby animal locations are contrasted with random locations (the availability sample). Although most use-availability methods are in fact spatial point process models, they often are fit using logistic regression. This framework offers numerous methodological challenges, for which the literature provides little guidance. Specifically, the size and spatial extent of the availability sample influences coefficient estimates potentially causing interpretational bias. We examined the influence of availability on statistical inference through simulations and analysis of serially correlated mule deer GPS data. Bias in estimates arose from incorrectly assessing and sampling the spatial extent of availability. Spatial autocorrelation in covariates, which is common for landscape characteristics, exacerbated the error in availability sampling leading to increased bias. These results have strong implications for habitat selection analyses using GPS data, which are increasingly prevalent in the literature. We recommend researchers assess the sensitivity of their results to their availability sample and, where bias is likely, take care with interpretations and use cross validation to assess robustness.

Ecology↗

Health status and relative exposure of mule deer and white-tailed deer to soil contaminants at the rocky mountain arsenal

We evaluated the health of 18 radio-collared deer [13 mule deer ( Odocoileus hemionus ) and 5 white-tailed deer ( O. virginianus )] from the Rocky Mountain Arsenal, near Denver, Colorado, USA, a Superfund site contaminated with a variety of materials, including organochlorine pesticides, metals, and nerve gas production by-products. Radio-collared deer were tracked for 1 to 3 years (1989–1992) to identify relative exposure to contaminants based on telemetry locations plotted on grid maps depicting known soil contaminant concentrations. At the end of the study, all animals were in fair or good body condition at the time of necropsy. Mean ages of mule deer and white-tailed deer were 7.4 (range 4–12) and 10.6 years (range 5–17), respectively. At necropsy, tissues were collected from the deer for serology, histopathology, and analysis for eight chlorinated hydrocarbons and two metals. Detectable residues of mercury were found in the kidneys of 10 deer (range 0.055–0.096 μg/g), dieldrin was found in fat ( n = 9) (range 0.02–0.72 μg/g), liver ( n = 4) (range 0.017–0.12 μg/g), and brain ( n = 1, 0.018 μg/g), and DDE was found in the muscle of one animal (0.02 μg/g). Relative exposure estimates derived from telemetry and soil contamination data were correlated with tissue levels of dieldrin ( p < 0.001) and mercury ( p = 0.05). Two mule deer had severe testicular atrophy, and one of these animals also had antler deformities. The prevalence of antibodies against epizootic hemorrhagic disease serotype 2 was 85%.

Colorado↗

One Health: A perspective from wildlife and environmental health sectors

Loss of biodiversity, habitat fragmentation and pollution, and subsequent degradation of natural environments threaten the range of ecosystem services that support all life on this planet. These changes, among others, are also driving the emergence of infectious diseases, with negative health outcomes for humans, animals, and our shared environment. Historically, interventions aimed at human and agricultural health issues did not always integrate wildlife or environmental health as part of the solution, which has resulted in unintended consequences. One Health recognises the interdependence of humans, animals and their shared environment, and provides a conceptual framework for developing interventions that optimise outcomes for human, animal and environmental health. However, there is a need to clearly articulate the core values, goals, and objectives of One Health for all relevant sectors in order to maximise synergies for communication, coordination, collaboration, and, ultimately, for joint actions on disease control and prevention. Application of systems and harm reduction approaches, focusing on the socio-economic and environmental determinants of health, and ensuring good governance and effective leadership will also maximise the opportunities to develop ‘win-win-win’ solutions to global health and environmental challenges. These solutions would help propel One Health forward to reach its full potential and truly optimise health outcomes for all.

Scientific and Technical Review↗

Using digital photography to examine grazing in montane meadows

Cattle ( Bos taurus ) numbers on national forests are allocated based on allotment grazing capacity, but spatial patterns of timing and density at smaller scales are difficult to assess. However, it is often in meadows or riparian areas that grazing may affect hydrology, biodiversity, and other important ecosystem characteristics. To explore real-time animal presence in montane meadows we distributed 18 digital cameras across nine sites in the Sierra National Forest, California. Our objectives were to document seasonal and diurnal presence of both cattle and mule deer ( Odocoileus hemionus ), identify the effects of three fencing treatments on animal distribution, and test digital photography as a tool for documenting cattle presence. We recorded 409 399 images during daylight hours for two grazing seasons, and we identified 5 084 and 24 482 cattle "marks" (instances of animal occurrence) in 2006 and 2007, respectively. Deer presence was much lower, with 331 marks in 2006 and 598 in 2007. Morning cattle presence was highest before 0800 hours both years (13.7% and 15.4% of total marks for 2006 and 2007, respectively). Marks decreased until 1100 hours and then increased around 1400 hours and remained relatively stable until 1900 hours. Marks then rose precipitously, with >20% of total marks recorded after 1900 hours both years. Deer presence was less than 10% per hour until 1800 hours, when >20% of total marks were recorded after this time both years. Among treatments, cattle marks were highest outside fences at partially fenced meadows, and deer were highest within completely fenced meadows. Our experience suggests that cameras are not viable tools for meadow monitoring due to variation captured within meadows and the time and effort involved in image processing and review.

Rangeland Ecology and Management↗

Dietary and spatial overlap between sympatric ursids relative to salmon use

We hypothesized that there would be minimal dietary overlap between sympatric brown bears ( Ursus arctos ) and American black bears ( U. americanus ) relative to salmon ( Oncorhynchus spp.) utilization when alternative foods (e.g., fruits) are abundant. To maximize the chance that we would reject this hypothesis, we examined the diets of brown and black bears known to have visited salmon streams. Species, sex, and individual identification of bears visiting salmon streams were determined by DNA analysis of hair and feces collected in 2002-2004 along those streams. Diets were estimated from fecal residues and stable isotope analyses of hair. Assimilated diets of brown bears were 66.0% (SD = 16.7%) salmon , 13.9% (SD = 7.5%) terrestrial animal matter, and 20.1% (SD = 17.2%) plant matter. Assimilated diets of black bears were 8.0% (SD = 5.4%) salmon , 8.4% (SD = 9.7%) terrestrial animal matter, and 83.6% (SD = 7.7%) plant matter. Male and female brown bears did not differ in either the proportion of dietary salmon, terrestrial animal matter, or plant matter. The relative amounts of fruit residues in the feces of brown bears (87.0%, SD = 15.2%) and black bears (91.8%, SD = 7.2%) did not differ. Both sexes of brown bears visited salmon streams and consumed significant amounts of salmon, but only male American black bears visited streams and then consumed minimal amounts of salmon. Thus, brown bears were largely carnivorous and black bears were largely herbivorous and frugivorous. This reduced dietary overlap relative to salmon and fruit use is understandable in light of the concentrated, defendable nature of salmon in small streams, the widely dispersed, non-defendable nature of abundant fruits, the dominance of brown over black bears, the higher energy requirement of the larger brown bear, and, therefore, the differing ability of the species to efficiently exploit different food resources.

Ursus↗

Evaluating methods to assess the body condition of female polar bears

An animal's body condition provides insight into its health, foraging success, and overall fitness. Measures of body composition including proportional fat content are useful indicators of condition. Isotopic dilution is a reliable non-destructive method for estimating the body composition of live mammals, but can require prolonged handling times. Alternatively, bioelectrical impedance analysis (BIA) has promise as a quick method for estimating the body composition of live mammals, but measurements can potentially be affected by field conditions. Body condition indices (BCI) and energy density models can also be used to assess body condition based on morphological measurements, but may not reliably reflect an animal's energy stores. Here we evaluate BIA, BCI, and an energy density model in measuring the energy stores of female polar bears ( Ursus maritimus ). We examine the relationship between total body fat (TBF) derived from isotopic dilution to these alternative methods for 9 female polar bears from 14 captures on the sea ice of the southern Beaufort Sea in April 2014–2016. An energy density model, BCI, and BIA-derived measures of TBF were poor predictors of TBF derived from isotopic dilution. We suggest energy density, BCI, and BIA may not be predictive of an animal's body fat at fine scales (e.g., among individuals within the same sex, reproductive status, and season). In particular, BIA should provide similar measures of body composition as isotopic dilution, but it failed to reliably measure TBF of individual bears. These limitations in the precision of body condition measures should be considered when planning future studies.

Ursus↗

Validation of mercury tip-switch and accelerometer activity sensors for identifying resting and active behavior in bears

Activity sensors are often included in wildlife transmitters and can provide information on the behavior and activity patterns of animals remotely. However, interpreting activity-sensor data relative to animal behavior can be difficult if animals cannot be continuously observed. In this study, we examined the performance of a mercury tip-switch and a tri-axial accelerometer housed in collars to determine whether sensor data can be accurately classified as resting and active behaviors and whether data are comparable for the 2 sensor types. Five captive bears (3 polar [ Ursus maritimus ] and 2 brown [ U. arctos horribilis ]) were fitted with a collar specially designed to internally house the sensors. The bears&rsquo; behaviors were recorded, classified, and then compared with sensor readings. A separate tri-axial accelerometer that sampled continuously at a higher frequency and provided raw acceleration values from 3 axes was also mounted on the collar to compare with the lower resolution sensors. Both accelerometers more accurately identified resting and active behaviors at time intervals ranging from 1 minute to 1 hour (&ge;91.1% accuracy) compared with the mercury tip-switch (range = 75.5&ndash;86.3%). However, mercury tip-switch accuracy improved when sampled at longer intervals (e.g., 30&ndash;60 min). Data from the lower resolution accelerometer, but not the mercury tip-switch, accurately predicted the percentage of time spent resting during an hour. Although the number of bears available for this study was small, our results suggest that these activity sensors can remotely identify resting versus active behaviors across most time intervals. We recommend that investigators consider both study objectives and the variation in accuracy of classifying resting and active behaviors reported here when determining sampling interval.

Ursus↗

A reexamination of age-related variation in body weight and morphometry of Maryland nutria

Age-related variation in morphometry has been documented for many species. Knowledge of growth patterns can be useful for modeling energetics, detecting physiological influences on populations, and predicting age. These benefits have shown value in understanding population dynamics of invasive species, particularly in developing efficient control and eradication programs. However, development and evaluation of descriptive and predictive models is a critical initial step in this process. Accordingly, we used data from necropsies of 1,544 nutria (Myocastor coypus) collected in Maryland, USA, to evaluate the accuracy of previously published models for prediction of nutria age from body weight. Published models underestimated body weights of our animals, especially for ages <3. We used cross-validation procedures to develop and evaluate models for describing nutria growth patterns and for predicting nutria age. We derived models from a randomly selected model-building data set (n = 192-193 M, 217-222 F) and evaluated them with the remaining animals (n = 487-488 M, 642-647 F). We used nonlinear regression to develop Gompertz growth-curve models relating morphometric variables to age. Predicted values of morphometric variables fell within the 95% confidence limits of their true values for most age classes. We also developed predictive models for estimating nutria age from morphometry, using linear regression of log-transformed age on morphometric variables. The evaluation data set corresponded with 95% prediction intervals from the new models. Predictive models for body weight and length provided greater accuracy and less bias than models for foot length and axillary girth. Our growth models accurately described age-related variation in nutria morphometry, and our predictive models provided accurate estimates of ages from morphometry that will be useful for live-captured individuals. Our models offer better accuracy and precision than previously published models, providing a capacity for modeling energetics and growth patterns of Maryland nutria as well as an empirical basis for determining population age structure from live-captured animals.

Journal of Wildlife Management↗

Pathogens, nutritional deficiency, and climate influences on a declining moose population

Several potential proximate causes may be implicated in a recent (post-1984) decline in moose ( Alces alces andersoni ) numbers at their southern range periphery in northwest Minnesota, USA. These causes include deleterious effects of infectious pathogens, some of which are associated with white-tailed deer ( Odocoileus virginianus ), negative effects of climate change, increased food competition with deer or moose, legal or illegal hunting, and increased predation by gray wolves ( Canis lupus ) and black bears ( Ursus americanus ). Long-standing factors that may have contributed to the moose decline include those typically associated with marginal habitat such as nutritional deficiencies. We examined survival and productivity among radiocollared ( n = 152) adult female and juvenile moose in northwest Minnesota during 1995–2000, and assessed cause of death and pathology through carcass necropsy of radiocollared and non-radiocollared animals. Aerial moose surveys suggested that hunting was an unlikely source of the numerical decline because the level of harvest was relatively low (i.e., approx. 15% / 2 yr) and the population usually grew in years following a hunt. The majority of moose mortalities (up to 87% of radiocollared moose [ n = 76] and up to 65% of non-radiocollared moose [ n = 84]) were proximally related to pathology associated with parasites and infectious disease. Liver fluke ( Fascioloides magna ) infections apparently constituted the greatest single source of mortality and caused significant pathology in the liver, thoracic and peritoneal cavities, pericardial sac, and lungs. Mortality due to meningeal worm ( Parelaphostrongylus tenuis ) was less prevalent and was manifested through characteristic neurological disease. Several mortalities apparently were associated with unidentified infectious disease, probably acting in close association with malnutrition. Bone-marrow fat was lower for moose dying of natural causes than those dying of anthropogenic factors or accidents, implying that acute malnutrition contributed to moose mortality. Blood profiles from live-captured animals indicated that those dying in the subsequent 18 months were chronically malnourished. Relative to other populations, average annual survival rates for adult females (0.79 [0.74–0.84; 95% CI]) and yearlings (0.64 [0.48–0.86]) were low, whereas those for calves (0.66 [0.53–081]) were high. Pregnancy (48%) and twinning (19%) rates were among the lowest reported for moose, with reproductive senescence among females being apparent as early as 8 years. Pregnancy status was related to indices of acute (i.e., bone-marrow fat) and chronic (i.e., blood condition indices) malnutrition. Opportunistic carcass recovery indicated that there likely were few prime-aged males (>5 yr old) in the population. Analysis of protein content in moose browse and fecal samples indicated that food quality was probably adequate to support moose over winter, but the higher fecal protein among animals that died in the subsequent 18 months could be indicative of protein catabolism associated with malnutrition. Trace element analysis from moose livers revealed apparent deficiencies in copper and selenium, but there was limited evidence of direct association between trace element concentrations and moose disease, pathology, or mortality. Time-series analysis of regional moose counts (1961–2000) indicated that annual population growth rate was related negatively to mean summer temperature, with winter and summer temperatures increasing by an average of 6.8 and 2.1 C, respectively, during the 40-year period. This change may have increased moose thermoregulatory costs and disrupted their energy balance, and thereby reduced their fitness. Time-series analysis failed to show a relationship between annual population growth rate and moose or deer abundance, indicating that food limitation via resource competition was unlikely. Population viability analyses, using count data (1961–2000) and demographic data collected during this study, suggested that the northwest Minnesota moose population likely would not persist over the next 50 years. More broadly, we conclude that the southern distribution of moose may become restricted in areas where climate and habitat conditions are marginal, especially where deer are abundant and act as reservoir hosts for parasites.

Minnesota↗

Search path of a fossorial herbivore, Geomys bursarius , foraging in structurally complex plant communities

The influence of habitat patchiness and unpalatable plants on the search path of the plains pocket gopher ( Geomys bursarius ) was examined in outdoor enclosures. Separate experiments were used to evaluate how individual animals explored (by tunnel excavation) enclosures free of plants except for one or more dense patches of a palatable plant ( Daucus carota ), a dense patch of an unpalatable species ( Pastinaca sativa ) containing a few palatable plants ( D. carota ), or a relatively sparse mixture of palatable ( D. carota ) and unpalatable ( Raphanus sativus ) species. Only two of eight individuals tested showed the predicted pattern of concentrating search effort in patches of palatable plants. The maintenance of relatively high levels of effort in less profitable sites may reflect the security afforded food resources by the solitary social system and fossorial lifestyle of G. bursarius . Unpalatable plants repelled animals under some conditions, but search paths in the sparsely planted mixed-species treatment suggest animals can use visual or other cues to orient excavations. Evidence supporting area-restricted search was weak. More information about the use of visual cues by G. bursarius and the influence of experience on individual search mode is needed for refining current models of foraging behavior in this species.

Journal of Mammalogy↗

Limitations to mapping habitat use areas in changing landscapes using the Mahalanobis distance statistic

We tested the potential of a GIS mapping technique, using a resource selection model developed for black-tailed jackrabbits (Lepus californicus) and based on the Mahalanobis distance statistic, to track changes in shrubsteppe habitats in southwestern Idaho. If successful, the technique could be used to predict animal use areas, or those undergoing change, in different regions from the same selection function and variables without additional sampling. We determined the multivariate mean vector of 7 GIS variables that described habitats used by jackrabbits. We then ranked the similarity of all cells in the GIS coverage from their Mahalanobis distance to the mean habitat vector. The resulting map accurately depicted areas where we sighted jackrabbits on verification surveys. We then simulated an increase in shrublands (which are important habitats). Contrary to expectation, the new configurations were classified as lower similarity relative to the original mean habitat vector. Because the selection function is based on a unimodal mean, any deviation, even if biologically positive, creates larger Malanobis distances and lower similarity values. We recommend the Mahalanobis distance technique for mapping animal use areas when animals are distributed optimally, the landscape is well-sampled to determine the mean habitat vector, and distributions of the habitat variables does not change.

Journal of Agricultural, Biological, and Environme↗

A parametric generalization of the Hayne estimator for line transect sampling

The Hayne model for line transect sampling is generalized by using an elliptical (rather than circular) flushing model for animal detection. By assuming the ration of major and minor axes lengths is constant for all animals, a model results which allows estimation of population density based directly upon sighting distances and sighting angles. The derived estimator of animal density is a generalization of the Hayne estimator for line transect sampling.

Biometrics↗

Capture-recapture survival models taking account of transients

The presence of transient animals, common enough in natural populations, invalidates the estimation of survival by traditional capture- recapture (CR) models designed for the study of residents only. Also, the study of transit is interesting in itself. We thus develop here a class of CR models to describe the presence of transients. In order to assess the merits of this approach we examme the bias of the traditional survival estimators in the presence of transients in relation to the power of different tests for detecting transients. We also compare the relative efficiency of an ad hoc approach to dealing with transients that leaves out the first observation of each animal. We then study a real example using lazuli bunting (Passerina amoena) and, in conclusion, discuss the design of an experiment aiming at the estimation of transience. In practice, the presence of transients is easily detected whenever the risk of bias is high. The ad hoc approach, which yields unbiased estimates for residents only, is satisfactory in a time-dependent context but poorly efficient when parameters are constant. The example shows that intermediate situations between strict 'residence' and strict 'transience' may exist in certain studies. Yet, most of the time, if the study design takes into account the expected length of stay of a transient, it should be possible to efficiently separate the two categories of animals.

Biometrics↗

Feeding ecology of breeding gadwalls on saline wetlands

The feeding ecology of breeding gadwalls ( Anas strepera ) from saline wetlands in North Dakota was examined in relation to sex, pair mates, reproductive status, food availability, and wetland type during the spring and summer of 1971 and 1972. Esophagi of males and females contained 40.4 and 48.2 percent animal food, respectively, between 17 April and 25 August. Animal foods consumed by paired females varied with reproductive condition and were independent of their mates. Invertebrates increased from 47.7 i?? 17.4 percent in the diet during prelaying to 72.0 i?? 18.4 percent during laying and declined to 46.3 i?? 30.0 percent during postlaying. Aquatic insects dominated the diet during egg-laying and were selected disproportionately relative to their availability. Esophageal contents indicated that diversity of plant and animal foods in the diet varied inversely with specific conductance. Major factors influencing food selection of the breeding birds are discussed as interactions among their physiological status, their anatomical and behavioral characteristics, and the abundance and behavior of food organisms as influenced by chemical and physical features of the environment. The data suggested that these interrelated ecological factors act simultaneously to control the phenology of events and determine the foods utilized.

North Dakota↗

Feeding ecology of northern pintails and green-winged teal wintering in California

The feeding ecology of northern pintails (Anas acuta) and green-winged teal (A. crecca) was examined from October through February 1979-81 in 4 major seasonal marsh types in the Central Valley, California. The esophagi of 262 pintails contained 72.3% plant seeds and 27.7% animal matter. The esophagi of 173 green-winged teal contained 62.3% plant seeds and 37.6% animal matter. Swamp timothy (Heleochloa schoenoides) caryopses, chironomid midge larvae, and common barnyardgrass (Echinochloa crusgalli) caryopses formed >50% of the diet of both species. Both species were highly opportunistic and generally shifted their food habits seasonally to the most available foods. Animal matter increased seasonally in the diets of both and formed about 60% of the foods eaten during January and February compared to only about 8% in October and 17% in December. Both species used open water marsh habitats almost exclusively in daytime but they used densely vegetated marshes almost exclusively at night. Management recommendations based on the food habits and habitat use patterns of pintails and green-winged teal are offered.

Journal of Wildlife Management↗

Mortality estimation from carcass searches using the R-package carcass: a tutorial

This article is a tutorial for the R-package carcass . It starts with a short overview of common methods used to estimate mortality based on carcass searches. Then, it guides step by step through a simple example. First, the proportion of animals that fall into the search area is estimated. Second, carcass persistence time is estimated based on experimental data. Third, searcher efficiency is estimated. Fourth, these three estimated parameters are combined to obtain the probability that an animal killed is found by an observer. Finally, this probability is used together with the observed number of carcasses found to obtain an estimate for the total number of killed animals together with a credible interval.

Wildlife Biology↗

Chronic wasting disease detection and mortality sources in semi-protected deer population

Surveillance for wildlife diseases is essential for assessing population dynamics of ungulates, especially in free-ranging populations where infected animals are difficult to sample. Chronic wasting disease (CWD) is an emerging infectious disease of concern because of the potential for substantial negative effects on populations of cervids. Variability in the likelihood that CWD is detected could invalidate traditional estimators for prevalence. In some instances, deer located after death cannot be tested for infectious diseases, including CWD, because of lack of availability or condition of appropriate tissues. We used various methods to detect infectious diseases that could cause mortality for deer Odocoileus spp. residing in Wind Cave National Park, South Dakota, USA, and we report survival estimates for animals in this population. We included 34 monthly encounters of deer resightings and 67 mortalities. We tested live deer by tonsillar biopsy for CWD and estimated pooled prevalence (mean ± SE) at 5.6 ± 3.0% over the three-year study. Live deer potentially had exposure to several infectious diseases, including bluetongue, epizootic hemorrhagic disease, bovine viral diarrhea, West Nile virus, and malignant catarrhal fever, but no apparent morbidity or mortality from those diseases. We tested survival and influence of covariates, including age and sex, using known-fate analysis in Program MARK. Those data best supported a model with time-invariant encounter probability and an annual survival of 72.8%. Even without direct pressure from hunting within the park, average life expectancy in this population was 3.2 years. Only 68% of mortalities contained sufficient material for CWD sampling (because of predation and scavenger activity) and >42% of these were CWD-positive. These findings underscore the possible biases in postmortem surveillance estimates of disease prevalence because of potential for subclinical infected animals to be removed by predators and not tested.

South Dakota↗

Monitoring eradication of European mouflon sheep from the Kahuku Unit of Hawai‘i Volcanoes National Park

European mouflon ( Ovis gmelini musimon ), the world's smallest wild sheep, have proliferated and degraded fragile native ecosystems in the Hawaiian Islands through browsing, bark stripping, and trampling, including native forests within Hawai‘i Volcanoes National Park (HAVO). HAVO resource managers initiated ungulate control efforts in the 469 km 2 Kahuku Unit after it was acquired in 2003. We tracked control effort and used aerial surveys in a 64.7 km 2 area from 2004 to 2017 and more intensive ground surveys and camera-trap monitoring to detect the last remaining animals within a 25.9 km 2 subunit after it was enclosed by fence in 2012. Aerial shooting yielded the most removals per unit effort (3.2 animals/ hour), resulting in 261 animals. However, ground-based methods yielded 4,607 removals overall, 3,038 of which resulted from assistance of volunteers. Ground shooting with dogs, intensive aerial shooting, ground sweeps, and forward-looking infrared (FLIR)-assisted shooting were necessary to find and remove the last remaining mouflon. The Judas technique, baiting, and trapping were not successful in attracting or detecting small numbers of remaining individuals. Effort expended to remove each mouflon increased nearly 15-fold during the last 3 yr of eradication effort from 2013 to 2016. Complementary active and passive monitoring techniques allowed us to track the effectiveness of control effort and reveal locations of small groups to staff. The effort and variety of methods required to eradicate mouflon from an enclosed unit of moderate size illustrates the difficulty of scaling up to entire populations of wild ungulates from unenclosed areas.

Hawai'i↗