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At least 685 records · Page 38Linked to original sources
USGS2025

Stable C and N isotope analyses redefine cisco as pelagic piscivores in Lake Michigan

Lake Michigan’s cisco ( Coregonus artedi ) population is in the midst of an expansion (2011-present) recovering from near extirpation levels observed in the 1970 s. Strong evidence of piscivory derived from observed diet analyses suggests the population may occupy a unique trophic position relative to typical expectations for the species. To verify these observations, cisco and their prey were collected from 2017 to 2020 for stable C and N isotope analyses. Leveraging existing stable isotope datasets for Lake Michigan, the trophic position of cisco was assessed by quantifying the isotopic niche space occupied relative to common salmonine piscivores and prey fish species. Diet mixing models were constructed to estimate the relative importance of potential prey sources to cisco diets. Results suggested that cisco occupied an isotopic niche similar to Pacific salmonines ( Oncorhynchus spp.) and brown trout ( Salmo trutta ) that are mainly piscivorous. Conversely, there was low isotopic niche overlap with prey fish species that are mainly planktivorous. Mixing models suggest greater reliance on pelagic prey sources (including alewife Alosa pseudoharengus and Bythotrephes longimanus ) in cisco diets when compared with observations of stomach contents. Under the present ecological conditions in Lake Michigan, it appears that adult cisco in this population occupy the trophic role of a pelagic piscivore.

Lake Michigan↗
USGS2023

Photochemical mobilization of dissolved hydrocarbon oxidation products from petroleum contaminated soil into a shallow aquifer activate human nuclear receptors

Elevated non-volatile dissolved organic carbon (NVDOC) concentrations in groundwater monitoring wells under oil-contaminated hydrophobic soils originating from a pipeline rupture at the National Crude Oil Spill & Natural Attenuation Research Site near Bemidji, MN are documented.. We hypothesized the elevated NVDOC is comprised of water-soluble photooxidation products transported from the surface to the aquifer. We use field and laboratory samples in combination with complementary analytical methods to test this hypothesis and determine the biological response to these products. Observations from optical spectroscopy and ultrahigh-resolution mass spectrometry reveal a significant correlation between the chemical composition of NVDOC leached from photochemically weathered soils and groundwater monitoring wells with high NVDOC concentrations measured in the aquifer beneath the contaminated soil. Conversely, the chemical composition from the uncontaminated soil photoleachate, matches the NVDOC observed in the uncontaminated wells. Contaminated groundwater and photodissolution leachates from contaminated soil activated biological targets indicative of xenobiotic metabolism and exhibited potential for adverse effects. Newly formed hydrocarbon oxidation products (HOPs) from fresh oil could be distinguished from those downgradient. This study illustrates another pathway for dissolved HOPs to infiltrate groundwater and potentially affect human health and the environment.

Minnesota↗
USGS2014

Practical limitations on the use of diurnal temperature signals to quantify groundwater upwelling

Groundwater upwelling to streams creates unique habitat by influencing stream water quality and temperature; upwelling zones also serve as vectors for contamination when groundwater is degraded. Temperature time series data acquired along vertical profiles in the streambed have been applied to simple analytical models to determine rates of vertical fluid flux. These models are based on the downward propagation characteristics (amplitude attenuation and phase-lag) of the surface diurnal signal. Despite the popularity of these models, there are few published characterizations of moderate-to-strong upwelling. We attribute this limitation to the thermodynamics of upwelling, under which the downward conductive signal transport from the streambed interface occurs opposite the upward advective fluid flux. Governing equations describing the advection–diffusion of heat within the streambed predict that under upwelling conditions, signal amplitude attenuation will increase, but, counterintuitively, phase-lag will decrease. Therefore the extinction (measurable) depth of the diurnal signal is very shallow, but phase lag is also short, yielding low signal to noise ratio and poor model sensitivity. Conversely, amplitude attenuation over similar sensor spacing is strong, yielding greater potential model sensitivity. Here we present streambed thermal time series over a range of moderate to strong upwelling sites in the Quashnet River, Cape Cod, Massachusetts. The predicted inverse relationship between phase-lag and rate of upwelling was observed in the field data over a range of conditions, but the observed phase-lags were consistently shorter than predicted. Analytical solutions for fluid flux based on signal amplitude attenuation return results consistent with numerical models and physical seepage meters, but the phase-lag analytical model results are generally unreasonable. Through numerical modeling we explore reasons why phase-lag may have been over-predicted by the analytical models, and develop guiding relations of diurnal temperature signal extinction depth based on stream diurnal signal amplitude, upwelling magnitude, and streambed thermal properties that will be useful in designing future experiments.

Journal of Hydrology↗
USGS2022

Assessing spatial transferability of a random forest metamodel for predicting drainage fraction

Fully distributed hydrological models are widely used in groundwater management, but model speed and data requirements impede their use for decision support purposes. Metamodels provide a simpler and faster model which emulates the underlying complex model using machine learning techniques. However, metamodel predictions beyond the ranges, in space and/or time, of training data are highly uncertain, and thus it is important to assess the predictive model performance to ranges outside the training data, i.e., model transferability . We present a novel methodology for evaluating model transferability to areas not contained in the training data set, based on various metrics that quantify the differences in covariate distributions between training and testing data. The transferability method can be employed as a screening tool to assess the suitability of a metamodel for spatial prediction beyond its training domain. We evaluated this transferability approach on a Random Forest metamodel of a 1000 km 2 fully distributed coupled groundwater model for predicting drainage fraction, the partitioning of infiltrating water between drains and groundwater. We conducted spatial cross-validation on 9 holdout sub-basins to assess metamodel transferability beyond sampling locations and compared this estimate with a random split-sample validation test. Using mappable covariates only, the metamodel showed high performance (R 2 = 0.79) tested on a 20% randomly sampled holdout. Conversely, metamodel performance significantly decreased for the 9 spatial holdouts (R 2 ranging from 0.13 to 0.61). We document that the proposed transferability metric correlates with metamodel predictive performance, and demonstrate its use to assess model transferability to datasets outside the training data spatial domain.

Journal of Hydrology↗
USGS2023

Searching for the Achilles heel(s) for maintaining invertebrate biodiversity across complexes of depressional wetlands

Wetlands are among the most threatened ecosystems worldwide due to climate change and land-use conversion. Regional biodiversity of temporary wetlands is dependent on the existence of habitat complexes with variable hydroperiods. Because temperature and rainfall regimes are predicted to shift globally, together with land-use patterns, different scenarios of wetland loss are expected in the future. To understand how wetland biodiversity might change in the future, it is important to evaluate how the loss of particular hydroperiods will affect overall diversity in a region. Using invertebrate datasets from five wetland complexes distributed across South and North America, we calculated beta diversity metrics for each region. Then we contrasted those metrics to simulations of sequential deletions of subsets (30%) of the long-, moderate- and short-hydroperiod wetlands to assess which wetland class would most affect invertebrate beta diversity in each region. Deletions of the short-hydroperiod wetlands led to the most significant decline in beta diversity. However, deletion effects of different wetland classes varied across study regions, with a negative correlation existing between deletions of the long- and short-hydroperiod wetlands on invertebrate beta diversity. Our simulations indicate that loss of short-hydroperiod wetlands will have the most significant effects on invertebrate beta diversity, but loss of long-hydroperiod wetlands will also be important. Thus, wetlands from both hydroperiod extremes should be considered when assessing potential biodiversity declines associated with habitat loss.

Journal for Nature Conservation↗
USGS2008

Pre-1991 sulfur transfer between mafic injections and dacite magma in the Mt. Pinatubo reservoir

Before the 1991–1992 activity, a large andesite lava dome belonging to the penultimate Pinatubo eruptive period (Buag ∼ 500 BP) formed the volcano summit. Buag porphyritic andesite contains abundant amphibole-bearing microgranular enclaves of basaltic–andesite composition. Buag enclaves have lower K 2 O and incompatible trace element (LREE, U, Th) contents than mafic pulses injected in the Pinatubo reservoir during the 1991–1992 eruptive cycle. This study shows that Buag andesite formed by mingling of a hot, water-poor and reduced mafic magma with cold, hydrous and oxidized dacite. Depending on their size, enclaves experienced variable re-equilibration during mixing/mingling. Re-equilibration resulted in hydration, oxidation and transfer of mobile elements (LILE, Cu) from the dacite to the mafic melts and prompted massive amphibole crystallization. In Buag enclaves, S-bearing phases (sulfides, apatite) and melt inclusions in amphibole and plagioclase record the evolution of sulfur partition among melt, crystal and fluid phases during magma cooling and oxidation. At high temperature, sulfur is partitioned between andesitic melt and sulfides (Ni-pyrrhotite). Magma cooling, oxidation and hydration resulted in exsolution of a S–Cl–H 2 O vapor phase at the S-solubility minimum near the sulfide–sulfate redox boundary. Primary magmatic sulfide (pyrrhotite) and xenocrystic sulfide grains (pyrite), recycled together with olivines and pyroxenes from old mafic intrusives, were replaced by Cu-rich phases (chalcopyrite, cubanite) and, partially, by Ba–Sr sulfate. Sulfides degassed and transformed into residual spongy magnetite in response to fS 2 drop during final magma ascent and decompression. Our research suggests that a complete evaluation of the sulfur budget at Pinatubo must take into account the en route S assimilation from the country rocks. Moreover, this study shows that the efficiency of sulfur transfer between mafic recharges and injected magmas is controlled by the extent and rate of mingling, hydrous flushing and melt oxidation. Vigorous mixing/mingling and transformation of the magmatic recharge into a spray of small enclaves is required in order to efficiently strip their primary S-content that otherwise remains locked in the sulfides. Hydrous flushing increases the magma oxidation state of the recharges and modifies their primary volatile concentrations that cannot be recovered by the study of late-formed mineral phases and melt inclusions. Conversely, S stored in both late-formed Cu-rich sulfides and interstitial rhyolitic melt represents the pre-eruptive sulfur budget immediately available for release from mafic enclaves during their decompression.

Journal of Volcanology and Geothermal Research↗
USGS2017

Semipermanent GPS (SPGPS) as a volcano monitoring tool: Rationale, method, and applications

Semipermanent GPS (SPGPS) is an alternative to conventional campaign or survey-mode GPS (SGPS) and to continuous GPS (CGPS) that offers several advantages for monitoring ground deformation. Unlike CGPS installations, SPGPS stations can be deployed quickly in response to changing volcanic conditions or earthquake activity such as a swarm or aftershock sequence. SPGPS networks can be more focused or more extensive than CGPS installations, because SPGPS equipment can be moved from station to station quickly to increase the total number of stations observed in a given time period. SPGPS networks are less intrusive on the landscape than CGPS installations, which makes it easier to satisfy land-use restrictions in ecologically sensitive areas. SPGPS observations are preferred over SGPS measurements because they provide better precision with only a modest increase in the amount of time, equipment, and personnel required in the field. We describe three applications of the SPGPS method that demonstrate its utility and flexibility. At the Yellowstone caldera, Wyoming, a 9-station SPGPS network serves to densify larger preexisting networks of CGPS and SGPS stations. At the Three Sisters volcanic center, Oregon, a 14-station SPGPS network complements an SGPS network and extends the geographic coverage provided by 3 CGPS stations permitted under wilderness land-use restrictions. In the Basin and Range province in northwest Nevada, a 6-station SPGPS network has been established in response to a prolonged earthquake swarm in an area with only sparse preexisting geodetic coverage. At Three Sisters, the estimated precision of station velocities based on annual ~ 3 month summertime SPGPS occupations from 2009 to 2015 is approximately half that for nearby CGPS stations. Conversely, SPGPS-derived station velocities are about twice as precise as those based on annual ~ 1 week SGPS measurements. After 5 years of SPGPS observations at Three Sisters, the precision of velocity determinations is estimated to be 0.5 mm/yr in longitude, 0.6 mm/yr in latitude, and 0.8 mm/yr in height. We conclude that an optimal approach to monitoring volcano deformation includes complementary CGPS and SPGPS networks, periodic InSAR observations, and measurements from in situ borehole sensors such as tiltmeters or strainmeters. This comprehensive approach provides the spatial and temporal detail necessary to adequately characterize a complex and evolving deformation pattern. Such information is essential to multi-parameter models of magmatic or tectonic processes that can help to guide research efforts, and also to inform hazards assessments and land-use planning decisions.

Journal of Volcanology and Geothermal Research↗
USGS2019

Evaluating the role of Farm Bill conservation program participation in conserving America’s grasslands

Grasslands are one of the most imperiled ecosystems in the world and the majority of the grassland ecosystem in the United States is privately owned and used for agriculture. Conversion of grasslands to row crops is expanding, fueled by commodity price increases, technological improvements, and agricultural policy. The U.S. government primarily uses voluntary incentive-based conservation programs to address the environmental impacts of agriculture and encourage conservation on private land. To investigate the utility of these programs to conserve grasslands, we surveyed private landowners in the Plains and Prairie Pothole Ecoregion (PPPE), one of America’s most at-risk grassland areas, about their land use, environmental attitudes and values, and reasons for or against participating in a Farm Bill conservation program. Agricultural landowners with large land holdings, who value hunting, and have positive environmental values, attitudes, and behaviors, were more likely to participate in a program. Financial considerations and a desire for autonomy limited participation. While program participants had less land in grass than nonparticipants and were more likely to convert planted grass to row crops and/or remove wetlands, they were also less likely to convert virgin sod to row crops. These findings signal the need for additional research and tools other than FBCPs to conserve the PPPE grasslands.

Land Use Policy↗
USGS2019

C–O stable isotope geochemistry and 40Ar/39Ar geochronology of the Bear Lodge carbonatite stockwork, Wyoming, USA

The carbonatite dike swarm and vein stockwork at the center of the Paleogene Bear Lodge alkaline complex (BLAC), Wyoming, USA, is host to diverse REE mineral assemblages that are largely a result of subsolidus modification and REE redistribution. Pseudomorphic replacement of primary burbankite by an assemblage of ancylite, strontianite, and barite is the result of interaction with late-stage hydrothermal fluids that added Sr, Ba, S, F, and REE, analogous to the replacement processes described for some carbonatite complexes of Russia's Kola Peninsula. Carbon and oxygen stable isotope ratios indicate that the primary carbonatite mineralogy experienced degassing/pneumatolysis and alteration by fluids of variable temperature, CO 2 /H 2 O ratios, and/or meteoric water content. Isotopic differences of matrix calcite between Group 1 carbonatites (avg. δ 13 C = −7.3‰; δ 18 O = 9.1‰) and Group 2 carbonatites (avg. δ 13 C = −9.9‰; δ 18 O = 10.2‰) are consistent with loss of CO 2 during degassing. The open-system alteration of burbankite caused a pronounced positive δ 18 O-shift in bulk ancylite pseudomorphs (δ 18 O: 14.3–25.7‰) relative to matrix calcite (δ 18 O: 8.7–11.2‰). Oxygen isotope compositions of biotite (δ 18 O: 4.5–5.9‰) and K-feldspar (δ 18 O: 7.3–7.9‰) in unoxidized carbonatite are typical of primary magmatic silicates and suggest that fluids responsible for the burbankite-to-ancylite conversion remained predominantly magmatic (carbohydrothermal). Concomitant increases toward the surface in 13 C and 18 O, oxidation, matrix carbonate dissolution, and the replacement of REE carbonates (ancylite, carbocernaite, and burbankite) by Ca-REE fluorocarbonates (bastnäsite, parisite, synchysite) suggest interaction with late-stage, low temperature (<250 °C) fluids characterized by lower CO 2 /H 2 O ratios, and an increasing meteoric water component. The first 40 Ar/ 39 Ar ages from carbonatite-hosted biotite and K-feldspar at the BLAC are between 51.45 ± 0.08 and 51.89 ± 0.14 Ma. Although carbonatite is commonly observed as the final intrusive phase in alkaline igneous complexes, relative-age relationships and previously published geochronology for Bear Lodge rocks indicate that alkaline silicate magmatism both preceded and followed carbonatite emplacement.

Wyoming↗
USGS2013

Influence of history and environment on the sediment dynamics of intertidal flats

Morphological trends of three distinct intertidal environments in South San Francisco Bay were investigated using a combination of measurement and modeling tools. Because of the inherent relationship between the physical environment and the sediment properties, the sediment properties provide a good indicator of morphologic trends. A significant finding of this study is that surface sediment erodibility increases as the energy level in the environment increases. Conversely subsurface sediment erodibility shows a strong relationship to the long-term history of the site. The combination of the measured sediment properties, the history of deposition and erosion, and simple modeling of the physical environment illustrate the interaction of these properties such that an understanding of intertidal flat behavior is developed.

California↗
USGS2013

Changes in surfzone morphodynamics driven by multi-decadal contraction of a large ebb-tidal delta

The impact of multi-decadal, large-scale deflation (76 million m 3 of sediment loss) and contraction (~ 1 km) of a 150 km 2 ebb-tidal delta on hydrodynamics and sediment transport at adjacent Ocean Beach in San Francisco, CA (USA), is examined using a coupled wave and circulation model. The model is forced with representative wave and tidal conditions using recent (2005) and historic (1956) ebb-tidal delta bathymetry data sets. Comparison of the simulations indicates that along north/south trending Ocean Beach the contraction and deflation of the ebb-tidal delta have resulted in significant differences in the flow and sediment dynamics. Between 1956 and 2005 the transverse bar (the shallow attachment point of the ebb-tidal delta to the shoreline) migrated northward ~ 1 km toward the inlet while a persistent alongshore flow and transport divergence point migrated south by ~ 500 m such that these features now overlap. A reduction in tidal prism and sediment supply over the last century has resulted in a net decrease in offshore tidal current-generated sediment transport at the mouth of San Francisco Bay, and a relative increase in onshore-directed wave-driven transport toward the inlet, accounting for the observed contraction of the ebb-tidal delta. Alongshore migration of the transverse bar and alongshore flow divergence have resulted in an increasing proportion of onshore migrating sediment from the ebb-tidal delta to be transported north along the beach in 2005 versus south in 1956. The northerly migrating sediment is then trapped by Pt. Lobos, a rocky headland at the northern extreme of the beach, consistent with the observed shoreline accretion in this area. Conversely, alongshore migration of the transverse bar and divergence point has decreased the sediment supply to southern Ocean Beach, consistent with the observed erosion of the shoreline in this area. This study illustrates the utility of applying a high-resolution coupled circulation-wave model for understanding coastal response to large-scale bathymetric changes over multi-decadal timescales, common to many coastal systems adjacent to urbanized estuaries and watersheds worldwide.

California↗
USGS2014

The potential for sea-level-rise-induced barrier island loss: Insights from the Chandeleur Islands, Louisiana, USA

As sea level rises and hurricanes become more intense, barrier islands around the world become increasingly vulnerable to conversion from self-sustaining migrating landforms to submerging or subaqueous sand bodies. To explore the mechanism by which such state changes occur and to assess the factors leading to island disintegration, we develop a suite of numerical simulations for the Chandeleur Islands in Louisiana, U.S.A., which appear to be on the verge of this transition. Our results suggest that the Chandeleurs are likely poised to change state, leading to their demise, within decades depending on future storm history. Contributing factors include high rates of relative sea level rise, limited sediment supply, muddy substrate, current island position relative to former Mississippi River distributary channels, and the effects of changes in island morphology on sediment transport pathways. Although deltaic barrier islands are most sensitive to disintegration because of their muddy substrate, the importance of relative sea level rise rate in determining the timing of threshold crossing suggests that the conceptual models for deltaic barrier island formation and disintegration may apply more broadly in the future.

Louisiana, Mississippi↗
USGS2014

Response of diatom and silicoflagellate assemblages in the central Gulf of California to regional climate change during the past 55 kyrs

High-resolution studies of diatoms and silicoflagellates of the past 55 kyrs in cores MD02-2517/2515 from the central Gulf of California (GoC) reveal profound changes in GoC surface waters. Roperia tesselata , a diatom proxy for late winter–early spring upwelling, and Dictyocha stapedia , a subtropical silicoflagellate indicative of GoC sea surface temperatures (SSTs) > 24 °C, are common during the Holocene but rare during Marine Isotope Stage (MIS) 2 and most of MIS 3, a relationship that likely reflects a more northerly position of the North Pacific High (NPH) during the Holocene. In contrast during most of MIS 2 (~ 27–15 ka), the persistent presence of Distephanus speculum , a silicoflagellate associated with SSTs < 16°, suggests that cold, low salinity waters penetrated into the GoC, consistent with southward displacement of the NPH. During MIS 3 (~ 55–27 ka), increased dominance of Azpeitia nodulifera (diatom) implies that stratified, tropical waters were present year round, whereas silicoflagellate assemblages suggest that stratified tropical conditions alternated with more productive, upwelling conditions on millennial timescales. Reduced biosiliceous productivity during Heinrich events likely reflected a reduction in both surface water nutrient levels and in the strength of northwest winds due to a weakened and more southerly NPH. Conversely, enhanced biosiliceous productivity during MIS 3 interstadials was probably linked to heightened nutrient levels and a strengthened NPH. Abrupt relative abundance increases of the silicoflagellate, Dictyocha aculeata , approximate the termination of MIS3 Heinrich events and may signal times when nutrient-rich deep waters associated with the resumption of enhanced Atlantic Meridional Overturning Circulation penetrated into the central Gulf.

California↗
USGS2015

Standardization of reflectance measurements in dispersed organic matter: results of an exercise to improve interlaboratory agreement

Vitrinite reflectance generally is considered the most robust thermal maturity parameter available for application to hydrocarbon exploration and petroleum system evaluation. However, until 2011 there was no standardized methodology available to provide guidelines for vitrinite reflectance measurements in shale. Efforts to correct this deficiency resulted in publication of ASTM D7708: Standard test method for microscopical determination of the reflectance of vitrinite dispersed in sedimentary rocks . In 2012-2013, an interlaboratory exercise was conducted to establish precision limits for the D7708 measurement technique. Six samples, representing a wide variety of shale, were tested in duplicate by 28 analysts in 22 laboratories from 14 countries. Samples ranged from immature to overmature (0.31-1.53% R o ), from organic-lean to organic-rich (1-22 wt.% total organic carbon), and contained Type I (lacustrine), Type II (marine), and Type III (terrestrial) kerogens. Repeatability limits (maximum difference between valid repetitive results from same operator, same conditions) ranged from 0.03-0.11% absolute reflectance, whereas reproducibility limits (maximum difference between valid results obtained on same test material by different operators, different laboratories) ranged from 0.12-0.54% absolute reflectance. Repeatability and reproducibility limits degraded consistently with increasing maturity and decreasing organic content. However, samples with terrestrial kerogens (Type III) fell off this trend, showing improved levels of reproducibility due to higher vitrinite content and improved ease of identification. Operators did not consistently meet the reporting requirements of the test method, indicating that a common reporting template is required to improve data quality. The most difficult problem encountered was the petrographic distinction of solid bitumens and low-reflecting inert macerals from vitrinite when vitrinite occurred with reflectance ranges overlapping the other components. Discussion among participants suggested this problem could not be easily corrected via kerogen concentration or solvent extraction and is related to operator training and background. No statistical difference in mean reflectance was identified between participants reporting bitumen reflectance vs. vitrinite reflectance vs. a mixture of bitumen and vitrinite reflectance values, suggesting empirical conversion schemes should be treated with caution. Analysis of reproducibility limits obtained during this exercise in comparison to reproducibility limits from historical interlaboratory exercises suggests use of a common methodology (D7708) improves interlaboratory precision. Future work will investigate opportunities to improve reproducibility in high maturity, organic-lean shale varieties.

Marine and Petroleum Geology↗
USGS2020

Organic petrography of Leonardian (Wolfcamp A) mudrocks and carbonates, Midland Basin, Texas: The fate of oil-prone sedimentary organic matter in the oil window

To better understand evolution of oil-prone sedimentary organic matter to petroleum and expulsion from source rock, we evaluated organic petrographic features of Leonardian Wolfcamp A repetitive siliceous and calcareous mudrock and fine-grained carbonate lithofacies cycles occurring in the R. Ricker #1 core from Reagan County, Midland Basin, Texas. The objectives of the petrographic investigation were to estimate thermal maturity, identify organic matter types and abundances, and identify the presence or absence of migrated hydrocarbons in organic-lean carbonate layers. An integrated analytical program included geochemical screening [total organic carbon (TOC) content by LECO, programmed pyrolysis by hydrocarbon analyzer with kinetics (HAWK) including analysis of solvent-extracted samples], X-ray diffraction mineralogy, organic petrography, scanning electron microscopy with energy dispersive spectroscopy (SEM-EDS) including correlative light and electron microscopy (CLEM), and micro-Fourier transform infrared spectroscopy (μ-FTIR) analyses of solid bitumen. The data indicate all samples are early to middle oil window thermal maturity with solid bitumen reflectance (BR o ) values of 0.55–0.86% and T max of 440–455 °C. Organic matter is predominantly solid bitumen (as identified by optical microscopy) in all lithofacies with minor contributions from inertinite. Solid bitumen abundance decreases from siliceous mudrock (TOC >3.0 wt%) to calcareous mudrock (TOC 1.0 to 3.0 wt%) to fine-grained carbonate (TOC <1.0 wt%) lithofacies. Interpretations of petrographic data suggest siliceous and calcareous mudrocks are source rock lithofacies and contain solid bitumen (with petroleum generation potential) that is residual (what remains) from conversion of an original Type II sedimentary organic matter. In turn, fine-grained carbonates are interpreted as reservoir lithofacies which contained little or no original oil-prone sedimentary organic matter and at present-day contain only a minor component of migrated solid petroleum sourced from adjacent siliceous and calcareous mudrock lithofacies. This work helps to document petroleum generation and migration processes, improve unconventional reservoir characterization and better define areas of oil window thermal maturity in an area critical to United States hydrocarbon production.

Texas↗
USGS2016

Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus)

Newcastle disease is caused by virulent forms of avian paramyxovirus of serotype 1 (APMV-1) and has global economic importance. The disease reached panzootic proportions within two decades after first being identified in 1926 in the United Kingdom and Indonesia and still remains endemic in many countries across the world. Here we review information on the host, temporal, and geographic distribution of APMV-1 genetic diversity based on the evolutionary systematics of the complete coding region of the fusion gene. Strains of APMV-1 are phylogenetically separated into two classes (class I and class II) and further classified into genotypes based on genetic differences. Class I viruses are genetically less diverse, generally present in wild waterfowl, and are of low virulence. Class II viruses are genetically and phenotypically more diverse, frequently isolated from poultry with occasional spillovers into wild birds, and exhibit a wider range of virulence. Waterfowl, cormorants, and pigeons are natural reservoirs of all APMV-1 pathotypes, except viscerotropic velogenic viruses for which natural reservoirs have not been identified. Genotypes I and II within class II include isolates of high and low virulence, the latter often being used as vaccines. Viruses of genotypes III and IX that emerged decades ago are now isolated rarely, but may be found in domestic and wild birds in China. Containing only virulent viruses and responsible for the majority of recent outbreaks in poultry and wild birds, viruses from genotypes V, VI, and VII, are highly mobile and have been isolated on different continents. Conversely, virulent viruses of genotypes XI (Madagascar), XIII (mainly Southwest Asia), XVI (North America) and XIV, XVII and XVIII (Africa) appear to have a more limited geographic distribution and have been isolated predominantly from poultry.

Infection, Genetics and Evolution↗
USGS2020

Utilization of multiple microbial tools to evaluate efficacy of restoration strategies to improve recreational water quality at a Lake Michigan Beach (Racine, WI)

Hydro-meteorological conditions facilitate transport of fecal indicator bacteria (FIB) to the nearshore environment, affecting recreational water quality. North Beach (Racine, Wisconsin, United States), is an exemplar public beach site along Lake Michigan, where precipitation-mediated surface runoff, wave encroachment, stormwater and tributary outflow were demonstrated to contribute to beach advisories. Multiple restoration actions, including installation of a stormwater retention wetland, were successfully deployed to improve recreational water quality. Implementation of molecular methods (e.g. human microbial source tracking markers and Escherichia coli ( E. coli ) qPCR) assisted in identifying potential pollution sources and improving public health response time. However, periodic water quality failures still occur. As local beach managers reassess restoration measures in response to climatic changes, use of expanded microbial methods (including bacterial community profiling) may contribute to a better understanding of these dynamic environments. In this 2-year study (2015 and 2019), nearshore/offshore Lake Michigan, stormwater, and tributary samples were collected to determine if, 1) the constructed wetland (~50 m from the shoreline) continued to provide stormwater separation/retention and 2) mixing between onshore sources, Root River and Lake Michigan, was increasing due to rising precipitation/lake levels. Monthly rainfall totals were 1.5× higher in 2019 than 2015, coinciding with a 0.63 m lake-level rise. The prevalence of more intense, onshore winds also increased, facilitating interaction between potential reservoirs of FIB with nearshore water through wind driven waves and lake intrusion, e.g. beach sands and the adjacent Root River. While a strong relationship existed between wet weather wetland and North Beach nearshore E. coli concentrations (all sites), bacterial communities were strikingly different. Conversely, bacterial community overlap existed between the Root River mouth and nearshore/offshore sites. These results suggest the constructed wetland can accommodate the climate-related changes observed in this study. Future restoration activities could be directed towards upstream tributary sources in order to minimize microbial contaminants entering Lake Michigan.

Wisconsin↗
USGS2009

Evidence for long-term climate change in Upper Devonian strata of the central Appalachians

The highest 1 to 200 m of the Upper Devonian (Famennian) Catskill and equivalent Hampshire formations exhibit a noticeable vertical or stratigraphic change in color and a shift in lithologic character. The lower part of the unit is characterized by typically red, channel-phase sandstones and overbank siltstone and mudstone containing thin calcareous paleosols. These lithologies give way to greenish gray sandstone containing abundant coaly plant fragments, coalified logs, and pyrite, interbedded with thick intervals of non-calcareous paleo-vertisols. The increase in the prominence of preserved terrestrial organic matter suggests that there was a corresponding increase in the abundance of plants in terrestrial ecosystems. The stratigraphic change in lithology within the upper part of the Catskill-Hampshire succession suggests the onset of environmental conditions that became increasingly wet in response to elevated humid climatic conditions during the final stages of Catskill alluvial plain deposition. The sedimentological signature suggesting increased climatic wetness within the uppermost Catskill and Hampshire formations is nearly contemporaneous with the initiation of Late Devonian Gondwanan glaciation in the paleo-high-latitudes. The Appalachian climate record indicates that this change began during the Fa2c and continued through the latest Famennian, reaching its peak during the Fa2d when glacial deposits are recorded in the paleo-mid-latitudes of the Appalachian basin. Evidence of this late Famennian increase in precipitation also is recorded in the adjacent marine environments. Equivalent-age marine units in Ohio and Kentucky record progressive increases in both total organic carbon and the percentage of terrestrially-derived organic carbon. This suggests that there was a late Famennian increase in terrestrial organic matter productivity, and that during the late Famennian, there were elevated levels of runoff produced by the interpreted increase in precipitation that washed progressively higher amounts of terrestrial organic matter into the local marine environments. The late Famennian climate changes identified within the Appalachian basin strata have been recognizable globally, and appear to have had both positive and negative effects on the Earth's biota. Some marine groups exhibit sharp diversity drops or even extinction coincident with the maximum development of the late Famennian ice age. Conversely, terrestrial biota appears to have been more positively affected by the late Famennian increased wetness that accompanied this progressive climate change. Marked diversification and evolutionary innovation, which appear to coincide with this climatic deviation, can be recognized within terrestrial plant communities and early tetrapod amphibians. ?? 2009 Elsevier B.V. All rights reserved.

Palaeogeography, Palaeoclimatology, Palaeoecology↗