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Pacific Lamprey responses to stressors: Dewatering and electrofishing

The Pacific Lamprey Conservation Initiative (PLCI) is a collaboration of Tribes, Federal, and State agencies working together to protect and restore Pacific Lamprey ( Entosphenus tridentatus ) and other native lampreys (i.e., Lampetra spp.) in Alaska, Washington, Oregon, California, and Idaho. The U.S. Fish and Wildlife Service hosts and facilitates the PLCI, and the Columbia River Tribes play a large role in setting conservation goals and defining research needs. The PLCI annually solicits proposals for research and restoration activities, which are reviewed and ranked in collaboration with the Bonneville Power Administration (BPA), who annually provides funding to support PLCI priority proposals. This report summarizes two research projects selected through PLCI, and funded under one BPA contract, in support of Pacific Lamprey conservation. The two projects were not topically related apart from a common theme of potential stressors to lampreys and are being reported together because they were combined under one BPA agreement for contracting.

Report↗

Macracanthorhynchus ingens from raccoons in Maryland

There have been very few published records of the occurrence of the acanthocephalan parasite Macracanthorhynchus ingens (von Linstow, 1897) in North America. Chandler (1942) and Moore (1946) reported 11 o 13 raccoons ( Procyon lotor ) trapped in Angelina County, Texas, infected with these intestinal parasites. From 1 to 90 worms occurred in these animals. Chandler and Melvin (1951), in a study of parasites collected from mammals in Pennsylvania, reported M. ingens common in its usual host, the raccoon, and also found immature worms believed to belong to this species in skunk, Mephitis nigra ; mink, Mustela vision ; fox, Urocyon cineraoargenteus ; and mole, Parascalops breweri . Van Cleave (1953), in a review of North American Acanthocephala, lists the definitive host as raccoon of the States of Texas and Pennsylvania. He further states: “It is thought that the apparent discontinuous distribution of M. ingens is due to incomplete records of its occurrence in intervening states.” Subsequently, Goldberg (1954) reported 5 specimens of M. ingens in one of 14 skunks from Beltsville, Md. This parasite appears to be fairly common in raccoons from Maryland, as indicated by material from two stations in the State. Of 44 intestinal tracts collected during the winter months, 1943-1946, at the Patuxent Research Refuge, laurel, Maryland, 22 (50%) contained M. ingens in their intestines (Ediger, 1950). Numbers of these parasites per host varied from 1 to 125. Since then, additional raccoons from the Patuxent Research refuge have been found infected with M. ingens . The parasite has also been noted in raccoons collected from the Blackwater National Wildlife refuge and surrounding areas, near Cambridge on the eastern shore of Maryland. One raccoon obtained in May, 1950, contained five specimens of M. ingens . In a series of raccoons obtained by V.T. Harris, during the winter months 1950-1951, 32 (37%) of 86 raccoons examined were infected with M. ingens . Intensity varied from 1 to 44 worms per raccoon.

Maryland↗

Wilderness mineral potential: Assessment of mineral-resource potential in U.S. Forest Service lands studied in 1964-1984: Volume 1

Under the provisions of the Wilderness Act (Public Law 88-577, September 3, 1964) and subsequent related legislation, the U.S. Geological Survey (USGS) and the U.S. Bureau of Mines (USBM) have been conducting mineral surveys of wilderness and primitive areas, and of other national forest lands being considered for wilderness designation. The Wilderness Act directs that the results of these surveys are to be made available to the public and are to be submitted to the President and the Congress. This professional paper is a synopsis of the mineral surveys made from 1965 to 1983. It summarizes our current knowledge of mineral and energy resources and of the potential for the occurrence of undiscovered mineral and energy resources in 45 million acres of Federal lands, chiefly in national forests. This book, in two volumes, consists of 332 summary articles, arranged alphabetically by State, in which the mineral-resource potential of about 800 individual areas is discussed. The summaries of the mineral surveys were written during 1982-83, generally by those who made the surveys. Index maps of each state show the location of the areas studied, numerically keyed to an alphabetic list. The national distribution of the wilderness lands studied is shown on the frontispiece. Where lands were in proximity or were added to expand previously designated areas, they often are described in a single article. Each article begins with a short summary of the results of the mineral survey followed by a discussion of the character and geologic setting of the area. Mineral resources (if any) are discussed, and the potential for undiscovered mineral resources is assessed; these are keyed to the generalized geographic and geologic map of each area Areas that have geologic characteristics indicative of different degrees of potential for the occurrence of mineral resources are shown in shades of red on each map. Some articles have a section on suggestions for further study to better define the mineral-resource potential of the area A list of pertinent references (including many of the maps and reports prepared during the mineral survey) is provided at the end of each article. This introduction contains some basic concepts about mineral resources and mineral-resource potential to try to make the book more useful to those who are not familiar with the fields of earth science and mineral-resource assessments. The legislation dealing with the wilderness program is reviewed briefly, because this evolving legislation has imparted a continuing and changing influence on the mineral-resource surveys. The introduction concludes with a description of the publications of the Geological Survey that report in greater detail the results of the joint wilderness studies by the Geological Survey and the Bureau of Mines.

Alabama, Alaska, Arizona, Arkansas, California, Co↗

Updated study reporting levels (SRLs) for trace-element data collected for the California Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project, October 2009–October 2018

Groundwater samples have been collected in California as part of statewide investigations of groundwater quality conducted by the U.S. Geological Survey for the Groundwater Ambient Monitoring and Assessment (GAMA) Priority Basin Project (PBP) since 2004. The GAMA-PBP is being conducted in cooperation with the California State Water Resources Control Board to assess and monitor the quality of groundwater resources used for public and domestic drinking-water supply and to improve public knowledge of groundwater quality in California. Quality-control samples (including but not limited to field, equipment, and source-solution blanks) were collected to evaluate and quantify the quality of the groundwater sample results. The GAMA-PBP previously determined study reporting levels (SRLs) for trace-element results based primarily on field blanks collected in California from May 2004 through March 2013. SRLs are raised reporting levels used to reduce the likelihood of reporting false detections attributable to contamination bias. The purpose of this report is to identify any changes in the pattern or magnitude of concentrations or detections in field blanks since the last evaluation that would require changing or ending the use of SRLs implemented in October 2009. Constituents analyzed were aluminum, antimony, arsenic, barium, beryllium, boron, cadmium, chromium, hexavalent chromium, cobalt, copper, iron, lead, lithium, manganese, molybdenum, nickel, selenium, silver, strontium, thallium, uranium, vanadium, and zinc. For this review, data from 167 field blanks collected from October 2009 through October 2018 by the GAMA-PBP for trace elements were compiled. Based on a consistent pattern of decreasing cobalt and manganese concentrations in field blanks from 2009 to 2013, the GAMA-PBP decided to reevaluate all trace-element SRLs, effectively setting an end date for previously defined SRLs. Beginning October 2013, SRLs would be determined from field-blank data collected through October 2018. The detection frequency and upper limit of potential contamination bias (BD-90/90) were determined from field blanks for each trace element. The BD-90/90, that is, the upper 90-percent confidence limit of the 90th percentile concentration of potential extrinsic contamination, was calculated by assuming the binomial probability distribution. These results were compared to each constituent’s detection limit to determine whether an SRL was necessary to minimize the potential for detections in the groundwater samples, attributed principally to contamination bias. Results of the evaluation were used to set SRLs for trace-element data collected by the GAMA-PBP between October 2013 and October 2018. Trace elements prescribed an SRL based on this review were hexavalent chromium, cobalt, copper, lead, and zinc. This review also resulted in the removal of SRLs from iron, manganese, molybdenum, and nickel. Although an SRL for hexavalent chromium could not be evaluated in the earlier reviews because the data were not collected regularly until 2015, one was established herein as 0.34 micrograms per liter (µg/L). The SRL for cobalt, as previously implemented, had been to reject all results; it was changed to 0.16 µg/L following a reduction in cobalt field-blank detection frequency resulting from mitigation steps, starting in 2014, aimed at reducing contamination bias introduced by high-capacity capsule filters used during sample collection. The SRL for copper did not change, and the SRL for lead changed very little based on this review. Lastly, the SRL for zinc was lowered from 6.2 µg/L to 3.9 µg/L.

California↗

Sediment-hosted stratabound copper deposit model

This report contains a descriptive model of sediment-hosted stratabound copper (SSC) deposits that supersedes the model of Cox and others (2003). This model is for use in assessments of mineral resource potential. SSC deposits are the second most important sources of copper in the world behind porphyry copper deposits. Around 20 percent of the copper in the world is produced from this class of deposits. They are also the most important sources of cobalt in the world, and they are fourth among classes of ore deposits in production of silver. SSC deposits are the basis of the economies of three countries: Democratic Republic of Congo, Poland, and Zambia. This report provides a description of the key features of SSC deposits; it identifies their tectonic-sedimentary environments; it illustrates geochemical, geophysical, and geoenvironmental characteristics of SSC deposits; it reviews and evaluates hypotheses on how these deposits formed; it presents exploration and assessment guides; and it lists some gaps in our knowledge about the SSC deposits. A summary follows that provides overviews of many subjects concerning SSC deposits.

Scientific Investigations Report↗

Water sediment, and nutrient budgets, and bathymetric survey of Old and New Gillespie Lakes, Macoupin County, Illinois, May 1996-April 1997; with a discussion of lake-management practices

The Gillespie Lakes system serves as a drinking water source for the town of Gillespie, Illinois, and is a major recreational focus for the area. As part of an investigation of a concern that the lakes are being adversely affected by excessive sediment and nutrient in flows, this report presents hydrologic, sediment, and nutrient budgets for Old Gillespie Lake and New Gillespie Lake, calculated by the U.S. Geological Survey with data collected during May 1996-April 1997 in cooperation with the Illinois Environmental Protection Agency and the city of Gillespie, Illinois. Bathymetric data also were collected in the two lakes to produce maps of the lake bed elevations. The influx of sediment, phosphorus, and nitrogen into Old Gillespie Lake during the study period was 4,063, 6.02, and 52.3 tons, respectively. Old Gillespie Lake retained 92 percent of the inflowing sediment (which agrees with theoretical calculations of trapping efficiency for Old Gillespie Lake), 84 percent of the inflowing phosphorus, and 87 percent of the inflowing nitrogen. The influx of sediment, phosphorus, and nitrogen into New Gillespie Lake during the study period was 4,792, 7.56, and 64.3 tons, respectively. Old Gillespie Lake retained 95 percent of the inflowing sediment (which agrees with theoretical calculations of trapping efficiency for New Gillespie Lake), 82 percent of the inflowing phosphorus, and 81 percent of the inflowing nitrogen. The loads per area of phosphorus and nitrogen to the Gillespie Lakes were 1.06 tons/mi 2 and 9.26 tons/mi 2 , respectively. For row crops of corn and soybeans, the literature reports ranges of loads per area of phosphorus of 0.15 to 1.43 tons/mi 2 and of nitrogen of 0.86 to 11.43 tons/mi 2 . Therefore, loads to the Gillespie Lakes are relatively high for the given cropping practices, and application of best management practices may substantially reduce the per area loads of these nutrients. Considering these loads and retention of sediment and nutrients, a review of basic lake management practices is presented and discussed. This review is presented to assist lake managers in the achievement of lake water-quality goals.

Macoupin County↗

Observing systems, modeling, and forecasting

Predicting harmful algal blooms (HABs) requires integrating physical, chemical, and biological data collected from observing networks and then assimilating these data into models, which are used to generate forecasts. In 2005, the Harmful Algal Research and Response: A National Environmental Science Strategy 2005-2015 (HARRNESS, 2005) made recommendations on how to improve HAB modeling and forecasting over the next decade. Key HARRNESS recommendations related to sensing, networking, and modeling HABs included: ● Support the development and validation of new and improved technologies for remote cell and toxin detection, and for modeling and forecasting, ● Improve coordination of monitoring/ and modeling efforts, both at national and regional levels, ● Improve the use of networking technologies for monitoring and modeling efforts, ● Conduct sustained time series measurements of the biotic, chemical, and physical environments impacted by HABs, ● Develop food web models on the ecosystem fate and effects of toxins, ● Develop and improve species-specific models that link to physical-biological models. Here we review HAB observing, modeling, and forecasting advances and technologies and recommend research and management priorities for the next decade and beyond. Our report encompasses sensing technologies, sensor networking and data management, models and forecasts, and the paths to operationalize forecasts. Continued improvements of deployable sensors are foundational to improving early warning indicators, models, and forecasts, which are only as good as the underlying data. Sensing technology has advanced considerably in the last decade; for example, more capable fluorometric pigment sensors can track changes in bloom biomass in real-time. Additionally, automated imaging/classifying systems to identify and quantify key harmful algal (HA) taxa are being routinely deployed. However, deployable toxin sensors are available for only some HAB toxins and continue to be identified as a critical need by researchers and managers. As more and improved sensors and technologies become available, the data quality associated with each sensor needs to be assessed. Data quality encompasses the reliability, accuracy, and uncertainty associated with sensor-generated data. These data need to be of known quality so that researchers, managers, and end-users can reliably determine if the information is appropriate for their intended applications. Many of the data quality recommendations from HARRNESS (2005) are still relevant and have been reiterated within the management community. Understanding and documenting data quality, and when applicable, standardizing best practices for sensor use, continue to be recommended.

Report↗

Geology of possible petroleum provinces in Alaska

The history of petroleum exploration in Alaska and the geology of possible petroleum provinces in Alaska are reviewed. Maps showing Alaska's major Mesozoic and Tertiary tectonic elements, possible petroleum provinces, and indications of petrol, are included in this report. Annotated references in Geological Survey publications relating to petroleum and oil shale in Alaska are given at the end of the report. For the purpose of appraising its petroleum possibilities, Alaska is divided into the southern, central, and northern major geologic-physiographic regions. Southern Alaska includes the arcuate mountain chain formed by the Alaska and Aleutian Ranges and the Mentasta- Nutzotin Mountains, the coastal range and valley area to the south, and the southeastern Alaska "panhandle" -- an area of 185,000 square miles. Oil seeps on the west shore of Cook Inlet in southern Alaska were known as early as 1853, and claims were staked in this region in 1882. Drilling began near the oil seeps in the Katalla district about 1901, and this started Alaska's first period of oil activity. From 1902 to 1933 the Katalla field produced 154,000 barrels of oil from fractured shale and sandstone of Tertiary age the- first and only commercial production in Alaska. On the basis of geology, surficial indications of petroleum, and test wells drilled, six possible petroleum provinces are indicated in southern Alaska. They are Heceta Island area, Keku Islands area, Cook Inlet Mesozoic province, Gulf of Alaska Tertiary province, Cook Inlet Tertiary province, and Copper River basin. The exposed rocks in the Heceta Island area include lower Paleozoic graywacke-type sandstone, sandstone, conglomerate, and massive limestones with reeflike structures; igneous rocks are rare or lacking in much of the area. The Kosciusko-Tuxekan-Heceta synclinorium, the main structural feature, is modified by minor folds and faults. Some of the minor folds are reported to be broad and open, with flanks dipping 20°-145°. As far as known, the Heceta Island area has not heretofore been seriously considered as a possible petroleum province. Rocks of Silurian to Cretaceous age are exposed in the Keku Island area and include moderately folded and relatively unaltered limestone and other marine sedimentary rocks. The Cook Inlet Mesozoic province, a land area of approximately 18,500 square miles, includes a great thickness of unmetamorphosed marine sedimentary rocks of Jurassic and Cretaceous age. At least 23 test wells were drilled or started in this province by the end of 1955. Shows of oil and gas were encountered in many of these wells. During 1955 at least ten oil companies were active in this area and by the end of 1955 about 1 1/2 million acres were included in oil and gas leases applied for or granted. The Gulf of Alaska Tertiary province includes about 5,200 square miles in which rocks of Tertiary age are exposed or are believed to underlie Quaternary deposits. Between 1901 and the end of 1955 about 47 wells were drilled or started in this province. The Cook Inlet Tertiary province embraces an area of about 9,500 square miles, of which about 4,100 is covered by the shallow waters of Cook Inlet. Petroleum exploration has been in that part of the area which overlaps the Cook Inlet Mesozoic province. Eocene or younger Tertiary nonmarine sedimentary rocks are believed to underlie much of the province, and marine rocks of Tertiary age may also be present. The Copper River basin is a topographic basin underlain by unconsolidated deposits of Quaternary age. Tertiary rocks favorable for the accumulation of petroleum may underlie part of the basin but this is not believed likely. Except for some leasing activity no petroleum exploration has been recorded in the Copper River Basin to the end of 1955. Central Alaska is a region of about 275,000 square miles and consists of an irregular assemblage of intricately dissected uplands and alluvium-floored lowland basins. Scattered peaks of resistant intrusive igneous rocks surmount most of the upland areas. In the vast region of central Alaska only six test wells are known to have been drilled for the purpose of finding oil and gas. The maximum depth reached was 350 feet and the holes were mostly or entirely in Quaternary deposits. In recent years several oil companies have investigated some parts of the region and large areas in the Yukon-Koyukuk province are now under lease. Oil seeps, gas seeps, and other indications of petroleum have been reported from many localities; samples from two localities have been analyzed and reported to be petroleum. The geology of central Alaska is similar in a general way to that of the area between the Rocky Mountains and Sierra-Cascade belts of the United States. Sedimentary rocks, probably equivalent to the Precambrian Belt series, and rocks of the Cambrian and all younger geologic systems have been recognized in central Alaska. The structure of the region is known to be complex, but except in local mineral districts, it has not been mapped in detail. Based on the limited amount of available information, the region cannot be regarded as distinctly favorable for significant accumulations of petroleum. However, three pre-Cenozoic provinces, the Yukon-Koyukuk, the Kobuk, and the Kandik, and several large Cenozoic basin provinces may be worthy of further investigation. Northern Alaska includes the Brooks Range and all the treeless tundra north to the Arctic Coast, an area of about 125,000 square miles. The presence of oil seeps along the Arctic Coast has been known at least since 1900 and a description of the Cape Simpson oil seeps vas published in 1909. Since then oil and gas seeps have been described from nine localities, and oil shales and oil-bearing sandstones are known from many localities in the Arctic Foothills province. Oil and gas deposits have been discovered and geologic conditions are favorable for oil and gas accumulations in approximately half of the region. In 1923 approximately 37,000 square miles in northern Alaska was reserved by Executive order as Naval Petroleum Reserve No. 4. In 1944 the U. S. Navy began a vast petroleum exploration program which was suspended in 1953. In the years 1945 through 1955, 37 test wells and 45 core tests were drilled on 18 structures. Three oil fields, Umiat, Simpson, and Fish Creek, and two gas fields, South Barrow and Gubik, were discovered. Total reserve estimates for all discoveries of oil to 1955 range from 30 to 100 million barrels, and for gas, from 370 billion to 900 billion cubic feet. All northern Alaska, with the exception of the Brooks Range, can be considered a possible petroleum province, but the region can be subdivided into provinces of somewhat different potentialities. These subdivisions roughly correspond with the geomorphic provinces and sections, which in turn reflect differences in geology. The known oil-bearing beds are of Mesozoic age, primarily Cretaceous, and thus the possible petroleum provinces could be designated as Mesozoic. However, Paleozoic and Cenozoic rocks with favorable reservoir characteristics are exposed in the region and possibly underlie, in favorable structural situations, some of the areas as yet not tested. The Arctic Coastal Plain province includes gently folded and flat-lying Mesozoic beds that overlie a basement complex of Paleozoic and early Mesozoic age. Near the southern edge of this province the basement rocks are at depths of at least 20,000 feet, and to the north these rocks rise to within 2,500 feet of the surface. The Teshukpuk Lake section of the Arctic Coastal plain includes many of the known oil seeps; it is the most accessible to sea transportation, and lies almost completely within NPR 4. Thirteen test wells and 35 core tests have been drilled here; one gas field and two (at present, noncommercial) oil fields have been discovered. The possibility of further discoveries may depend largely on locating porous sandstones in stratigraphic rather than anticlinal traps. The White Hills section is distinguished topographically from the Teshukpruk section by its white-gravel-covered hills and fever lakes, and geologically by the presence of Tertiary rocks, including 2,000 feet of nonmarine beds in the west and at least 7,000 feet of marine beds to the east, in the vicinity of Carter Creek. This section appears to be more complex structurally. No test wells have been drilled in the White Hills section. The Northern Foothills section includes many closed anticlines. Twenty-four test wells and ten core tests have been drilled on 11 structures and two discoveries have been made -the Umiat oil field and the Gubik gas field. All these tests have been drilled in Cretaceous rocks. The Southern Foothills section is structurally similar to the Alberta Foothills and to the northern part of the Brooks Range. Great thicknesses of marine shale of Lover Cretaceous, Jurassic, and Triassic age are exposed. The outcropping Mesozoic sandstones are generally poorly sorted, nonporous, and impermeable. To the south the section is bordered by mountainous exposures of Mississippian limestone, which probably underlie at least part of this section. The rocks that underlie the deeply eroded complex structures of the Brooks Range include schist, slate, argillite, and limestone. Some exposed limestones have a strong petroleum-like odor and contain traces of petroleum residues.

Alaska↗

Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: Prominence of thymus expression, immune and metabolic function, and regions of ancient synteny

Background Bats of the genus Lasiurus occur throughout the Americas and have diversified into at least 20 species among three subgenera. The hoary bat ( Lasiurus cinereus ) is highly migratory and ranges farther across North America than any other wild mammal. Despite the ecological importance of this species as a major insect predator, and the particular susceptibility of lasiurine bats to wind turbine strikes, our understanding of hoary bat ecology, physiology, and behavior remains poor. Methods To better understand adaptive evolution in this lineage, we used whole-genome sequencing to identify protein-coding sequence and explore signatures of positive selection. Gene models were predicted with Maker and compared to seven well-annotated and phylogenetically representative species. Evolutionary rate analysis was performed with PAML. Results Of 9,447 single-copy orthologous groups that met evaluation criteria, 150 genes had a significant excess of nonsynonymous substitutions along the L. cinereus branch ( P < 0.001 after manual review of alignments). Selected genes as a group had biased expression, most strongly in thymus tissue. We identified 23 selected genes with reported immune functions as well as a divergent paralog of Steep1 within suborder Yangochiroptera. Seventeen genes had roles in lipid and glucose metabolic pathways, partially overlapping with 15 mitochondrion-associated genes; these adaptations may reflect the metabolic challenges of hibernation, long-distance migration, and seasonal variation in prey abundance. The genomic distribution of positively selected genes differed significantly from background expectation by discrete Kolmogorov–Smirnov test ( P < 0.001). Remarkably, the top three physical clusters all coincided with islands of conserved synteny predating Mammalia, the largest of which shares synteny with the human cat-eye critical region (CECR) on 22q11. This observation coupled with the expansion of a novel Tbx1 -like gene family may indicate evolutionary innovation during pharyngeal arch development: both the CECR and Tbx1 cause dosage-dependent congenital abnormalities in thymus, heart, and head, and craniodysmorphy is associated with human orthologs of other positively selected genes as well.

PeerJ↗

Nutrients, phytoplankton, zooplankton, and macrobenthos

Lower trophic levels support the prey fish on which most sport fish depend. Therefore, understanding the production potential of lower trophic levels is integral to the management of Lake Ontario’s fishery resources. Lower trophic-level productivity differs among offshore and nearshore waters. In the offshore, there is concern about the ability of the lake to support Alewife (Table 1) production due to a perceived decline in productivity of phytoplankton and zooplankton whereas, in the nearshore, there is a concern about excessive attached algal production (e.g., Cladophora) associated with higher nutrient concentrations—the oligotrophication of the offshore and the eutrophication of the nearshore (Mills et al. 2003; Holeck et al. 2008; Dove 2009; Koops et al. 2015; Stewart et al. 2016). Even though the collapse of the Alewife population in Lake Huron in 2003 (and the associated decline in the Chinook Salmon fishery) may have been precipitated by a cold winter (Dunlop and Riley 2013), Alewife had not returned to high abundances in Lake Huron as of 2014 (Roseman et al. 2015). Failure of the Alewife population to recover from collapse has been attributed to declines in lower trophic-level production (Barbiero et al. 2011; Bunnell et al. 2014; but see He et al. 2015). In Lake Michigan, concerns of a similar Alewife collapse led to a decrease in the number of Chinook Salmon stocked. If lower trophic-level production declines in Lake Ontario, a similar management action could be considered. On the other hand, in Lake Erie, which supplies most of the water in Lake Ontario, eutrophication is increasing and so are harmful algal blooms. Thus, there is also a concern that nutrient levels and algal blooms could increase in Lake Ontario, especially in the nearshore. Solutions to the two processes of concern—eutrophication in the nearshore and oligotrophication in the offshore—may be mutually exclusive. In either circumstance, fisheries management needs information on the productivity of lower trophic levels in Lake Ontario. In this chapter, we review the status of lower trophic levels in Lake Ontario with special attention to the current (2008-2013) and previous (2003-2007) reporting periods. During the two reporting periods, three whole-lake surveys of lower trophic levels were conducted: the Lower Trophic Level Assessment (LOLA) in 2003 and 2008 (Makarewicz and Howell 2012; Munawar et al. 2015b) and the Cooperative Science and Management Initiative (CSMI) in 2013. Analyses of the CSMI data are ongoing. In addition to the three one-year sources of information on lower trophic levels, several multi-year sources of information are available, including data from the surveillance program conducted since 1965 by Environment Canada (EC) (Dove 2009), monitoring conducted since 1980 by the U.S. Environmental Protection Agency’s (EPA) Great Lakes National Program Office (GLNPO) (Barbiero et al. 2014; Reavie et al. 2014), sampling for a Bioindex Program at two stations, one offshore and one in the Eastern Basin, assessments of Mysis diluviana (formerly Mysis relicta) conducted since 1980 by Fisheries and Oceans Canada (Johannsson et al. 1998, 2011) and the Ontario Ministry of Natural Resources and Forestry (OMNRF), and monitoring conducted since 1995 by the Biomonitoring Program (BMP) on the New York side of the lake (Holeck et al. 2015b). The BMP is a collaboration of the New York State Department of Environmental Conservation (DEC), U.S. Fish and Wildlife Service, U.S. Geological Survey (USGS), and Cornell University.

Special Publication↗

Analysis of high-resolution single channel seismic data for use in sediment resource evaluation, eastern Texas and western Louisiana Continental Shelf, Gulf of Mexico

Shallow subsurface geologic data recorded as high-resolution seismic profiles are used to interpret the geology of coastal and marine systems. These data were originally recorded on paper rolls that are stored in geophysical archives. Data collection has since converted to entirely digital formats, yet the analog data are still useful for geologic interpretation. This report describes the process of recovering analog copies of seismic profiles from physical archives, electronically scanning, and converting them to industry-standard digital format. The recovered data are also reviewed and assessed for potential sediment resources. The data recovered in this study were collected from the Gulf of Mexico continental shelf offshore of East Texas and West Louisiana. The project is a collaborative study between the U.S. Geological Survey and the Bureau of Ocean Energy Management.

Louisiana, Texas↗