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Status of the Sierra Nevada: the Sierra Nevada Ecosystem Project

The Sierra Nevada ecosystem project was requested by Congress in the Conference Report for Interior and related Agencies 1993 Appropriation Act, which authorized funds for a scientific review of the remaining old growth in the national forests of the Sierra Nevada in California, and for a study of the entire Sierra Nevada ecosystem by an independent panel of scientists, with expertise in diverse areas related to this issue. This CD-ROM is a digital version of the set of reports titled 'Sierra Nevada Ecosystem Project, final report to Congress' published in paper form by the Centers for Water and Wildland Resources of the University of California, Davis.

Data Series↗

Land-margin ecosystem hydrologic data for the coastal Everglades, Florida, water years 1996-2012

Mangrove forests and salt marshes dominate the landscape of the coastal Everglades (Odum and McIvor, 1990). However, the ecological effects from potential sea-level rise and increased water flows from planned freshwater Everglades restoration on these coastal systems are poorly understood. The National Park Service (NPS) proposed the South Florida Global Climate Change Project (SOFL-GCC) in 1990 to evaluate climate change and the effect from rising sea levels on the coastal Everglades, particularly at the marsh/mangrove interface or ecotone (Soukup and others, 1990). A primary objective of SOFL-GCC project was to monitor and synthesize the hydrodynamics of the coastal Everglades from the upstream freshwater marsh to the downstream estuary mangrove. Two related hypotheses were set forward (Nuttle and Cosby, 1993): 1. There exists hydrologic conditions (tide, local rainfall, and upstream water deliveries), which characterize the location of the marsh/mangrove ecotone along the marine and terrestrial hydrologic gradient; and 2. The marsh/mangrove ecotone is sensitive to fluctuations in sea level and freshwater inflow from inland areas. Hydrologic monitoring of the SOFL-GCC network began in 1995 after startup delays from Hurricane Andrew (August 1992) and organizational transfers from the NPS to the National Biological Survey (October 1993) and the merger with the U.S. Geological Survey (USGS) Biological Research Division in 1996 (Smith, 2004). As the SOFL-GCC project progressed, concern by environmental scientists and land managers over how the diversion of water from Everglades National Park would affect the restoration of the greater Everglades ecosystem. Everglades restoration scenarios were based on hydrodynamic models, none of which included the coastal zone (Fennema and others, 1994). Modeling efforts were expanded to include the Everglades coastal zone (Schaffranek and others, 2001) with SOFL-GCC hydrologic data assisting the ecological modeling needs. In 2002, as a response for a more interdisciplinary science approach to understanding the coastal Everglades ecological system, the SOFL-GCC hydrology project was integrated into the “Dynamics of Land-Margin Ecosystems: Historical Change, Hydrology, Vegetation, Sediment, and Climate” study (Smith and others, 2002). Data from the ongoing study has been useful in providing an empirical hydrologic baseline for the greater Everglades ecosystem restoration science and management needs. The hydrology network consisted of 13 hydrologic gaging stations installed in the southwestern coastal region of Everglades National Park along three transects: Shark River (Shark or SH) transect, Lostmans River (Lostmans or LO) transect, and Chatham River (Chatham or CH) transect (fig. 1). There were five paired surface-water/groundwater gaging stations on the Shark transect (SH1, SH2, SH3, SH4, and SH5) and one stage gaging station (BSC) in the Big Sable Creek; four paired surface-water/groundwater gaging stations on the Lostmans transect (LO1, LO2, LO3, and LO4); and three paired surface-water/groundwater gaging stations on the Chatham transect (CH1, CH2, and CH3). Both surface-water and groundwater levels, salinities, and temperatures were monitored at the paired gaging stations. Rainfall was recorded at marsh and open canopy gaging stations. This report details the study introduction, method, and description of data collected, which are accessible through the final instantaneous hydrologic dataset stored in the USGS South Florida Information Access (SOFIA) South Florida Hydrology Database website, http://sofia.usgs.gov/exchange/sfl_hydro_data/location.html#brdlandmargin .

Florida↗

Louisiana coastal ecosystem

Louisiana's coast and its degradation and restoration are major environmental issues being studied at the National Wetlands Research Center. Coastal ecosystems are vulnerable because of the tremendous amount of human activity that takes place along the coast. Information on ecological processes is essential to guide the development along the coast as well as to protect and restore wildlife habitat. Louisiana has about 40% of coastal wetlands in the lower 48 states; they support fish, waterfowl, and fur-bearing animals as well as unique cultures like that of the Acadians. The fish and wildlife resources of Louisiana's coast produce over $1 billion each year in revenues. But Louisiana has the highest coastal loss rate because of natural and human causes. Over the past three decades, Louisiana has lost as much as 35-40 mi 2 (90-104 km 2 ) of coastal wetlands a year. The National Wetlands Research Center is qualified to assess and monitor this ecosystem because of its proximity to the study area, a staff chosen for their expertise in the system, and a number of established partnerships with others who study the areas. The Center is often the lead group in partnerships with universities, other federal agencies, and private entities who study this ecosystem. Most of the Center's research and technology development performed for coastal wetlands are done at the Lafayette headquarters; some work is performed at the National Wetlands Research Center's project office in Baton Rouge, LA.

Fact Sheet↗

Measuring and mapping the topography of the Florida Everglades for ecosystem restoration

One of the major issues facing ecosystem restoration and management of the Greater Everglades is the availability and distribution of clean, fresh water. The South Florida ecosystem encompasses an area of approximately 28,000 square kilometers and supports a human population that exceeds 5 million and is continuing to grow. The natural systems of the Kissimmee-Okeechobee-Everglades watershed compete for water resources primarily with the region's human population and urbanization, and with the agricultural and tourism industries. Surface water flow modeling and ecological modeling studies are important means of providing scientific information needed for ecosystem restoration planning and modeling. Hydrologic and ecological models provide much-needed predictive capabilities for evaluating management options for parks, refuges, and land acquisition and for understanding the impacts of land management practices in surrounding areas. These models require various input data, including elevation data that very accurately define the topography of the Florida Everglades.

Florida↗

The tides and inflows in the mangroves of the Everglades (TIME) interdisciplinary project of the South Florida Ecosystem Program

The U. S. Geological Survey (USGS) has a prominent role in the Federal Government's comprehensive restoration plan for the south Florida ecosystem encompassing the Everglades-the largest remaining subtropical wilderness in the continental United States. USGS scientists, in collaboration with researchers from the National Park Service (NPS), other governmental agencies, and academia, are providing scientific information to land and resource managers for planning, executing, and evaluating restoration actions. One major thrust of the restoration effort is to restore the natural functioning of the ecosystem to predrainage conditions, an objective that requires knowledge of the hydrologic and hydraulic factors that affect the flow of water. A vast network of interlaced canals, rimmed with levees and fitted with hydraulic control structures, and highways, built on elevated embankments lined by borrow ditches and undercut by culverts, now act to control and direct the flow of water through the shallow low-gradient wetlands. As water flows south from Lake Okeechobee past the city of Miami and through Everglades National Park (ENP), it is diminished by canal diversions, augmented by seasonably variable precipitation, and depleted through evapotranspiration. Along its path, the shallow flowing water, referred to as sheet flow, interacts with surficial aquifers and is subject to the resistance effects of variably dense vegetation and forcing effects of winds. New scientific investigations are providing additional insight into the hydrologic and hydraulic processes governing the flow, and recent data-collection efforts are supplying more comprehensive data describing the flow behavior, both of which are benefiting development of improved numerical models to evaluate and restore the natural functioning of the ecosystem.

Florida↗

USGS Science for Restoration of South Florida: The South Florida Ecosystem Program

As land and resource managers see the value of their resources diminish, and the public watches the environments they knew as children become degraded, there are increasing calls to restore what has been lost, or to build productive ecosystems that will be healthy and sustainable under the conditions of human use. The U.S. Geological Survey's (USGS) Placed-Based Studies Program was established to provide sound science for resource managers in critical ecosystems such as South Florida (fig. 1). The program, which began in south Florida in 1995, provides relevant information, high-quality data, and models to support decisions for ecosystem restoration and management. The program applies multi- and interdisciplinary science to address regional and subregional environmental resources issues.

Florida↗

Loss of sagebrush ecosystems and declining bird populations in the Intermountain West: Priority research issues and information needs

Sagebrush lands in the Intermountain West are declining rapidly in quality and extent. Consequently, populations of many bird species dependent on these ecosystems also are declining. The greater sage-grouse has been petitioned for listing as a threatened and endangered species, and other species of sagebrush-obligate birds have special conservation status in most states. We identified the primary issues and information needs during a multi-agency workshop, conducted in response to concerns by management agencies related to declining bird population trends in sagebrush habitats. Priority needs were to (1) obtain a better understanding of bird response to habitat and landscape features, (2) develop monitoring designs to sample habitats and bird populations, (3) determine the effects of land use on sagebrush habitats and dependent bird species, and (4) identify linkages between breeding and wintering ranges. This agenda will identify causes and mechanisms of population declines in birds dependent on sagebrush ecosystems and will lead to better management of the ecosystems upon which they depend.

Fact Sheet↗

Canal and wetland flow transport interaction; coupling models for canal and wetland interactions in the South Florida ecosystem

Introduction The U.S. Geological Survey is one of several agencies participating in the scientific effort to provide knowledge that can help protect and preserve the ecosystem of south Florida. One project of the intergovernmental South Florida Ecosystem Program (SFEP) is focused on developing a computer model to simulate the flow of water and analyze the transport of waterborne chemical constituents between canals and wetlands. Quantification of dynamic flows within the south Florida ecosystem is vital to understanding the implications of the residence time of water, potentially nutrient-enriched (with nitrates or phosphates) or contaminant-laden (with metals or pesticides), that can alter plant life and affect biological communities. Nutrients carried in the water conveyed by canals draining agricultural areas and dispersed into wetlands by canal discharges, by levee overflows, or by seepage are considered to be a major contributor to changes in the types of vegetation found in the Everglades. Freshwater inflows, typically of varying magnitudes and durations, not only influence the salinity of Florida Bay but also potentially carry toxic substances that can affect and alter the Bay's aquatic biota. The simulation capability being developed within the SFEP can be useful for identifying approaches to alleviate adverse impacts of excessive or deficient flows and transported constituents. Through strategic use of a simulation model, cause-and-effect relations between discharge sources, flow magnitudes, transport processes, and changes in vegetation and biota can be investigated. The effects of driving forces on nutrient cycling and contaminant transport can then be quantified, evaluated, and considered in the development of remedial management plans.

Florida↗

Nutrient controls on biocomplexity of mangrove ecosystems

Mangrove forests are important coastal ecosystems that provide a variety of ecological and societal services. These intertidal, tree-dominated communities along tropical coastlines are often described as “simple systems,” compared to other tropical forests with larger numbers of plant species and multiple understory strata; however, mangrove ecosystems have complex trophic structures, and organisms exhibit unique physiological, morphological, and behavioral adaptations to environmental conditions characteristic of the land-sea interface. Biogeochemical functioning of mangrove forests is also controlled by interactions among the microbial, plant, and animal communities and feedback linkages mediated by hydrology and other forcing functions. Scientists with the U.S. Geological Survey (USGS) at the National Wetlands Research Center are working to understand more fully the impact of nutrient variability on these delicate and important ecosystems.

Fact Sheet↗

Science-Based Strategies for Sustaining Coral Ecosystems

Coral ecosystems and their natural capital are at risk. Greenhouse gas emissions, overfishing, and harmful land-use practices are damaging our coral reefs. Overwhelming scientific evidence indicates that the threats are serious, and if they are left unchecked, the ecological and social consequences will be significant and widespread. Although the primary stressors to coral ecosystems are known, science-based strategies are needed to more accurately explain natural processes and forecast human-induced change. Collaborations among managers and scientists and enhanced mapping, monitoring, research, and modeling can lead to effective mitigation plans. U.S. Geological Survey scientists and their partners assess coral ecosystem history, ecology, vulnerability, and resiliency and provide study results to decisionmakers who may devise policies to sustain coral resources and the essential goods and services they provide.

Fact Sheet↗

Future scenarios of impacts to ecosystem services on California rangelands

The 18 million acres of rangelands in the Central Valley of California provide multiple benefits or “ecosystem services” to people—including wildlife habitat, water supply, open space, recreation, and cultural resources. Most of this land is privately owned and managed for livestock production. These rangelands are vulnerable to land-use conversion and climate change. To help resource managers assess the impacts of land-use change and climate change, U.S. Geological Survey scientists and their cooperators developed scenarios to quantify and map changes to three main rangeland ecosystem services—wildlife habitat, water supply, and carbon sequestration. Project results will help prioritize strategies to conserve these rangelands and the ecosystem services that they provide.

California↗

Urban development and stream ecosystem health—Science capabilities of the U.S. Geological Survey

Urban development creates multiple stressors that can degrade stream ecosystems by changing stream hydrology, water quality, and physical habitat. Contaminants, habitat destruction, and increasing streamflow variability resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic biota. Understanding how algal, invertebrate, and fish communities respond to these physical and chemical stressors can provide important clues as to how streams should be managed to protect stream ecosystems as a watershed becomes increasingly urbanized. The U.S. Geological Survey continues to lead monitoring efforts and scientific studies on the effects of urban development on stream ecosystems in metropolitan areas across the United States.

Fact Sheet↗

U.S. Geological Survey Arctic ecosystem assessments

The U.S Geological Survey (USGS) conducts natural hazard and resource assessments of the Earth’s ecosystems and the response of those ecosystems to environmental change, human activities, and land use. Arctic regions of Alaska are important for cultural and economic sustainability and host a wide variety of wildlife species, many of which are of conservation and management interest to the U.S. Department of the Interior. The USGS and collaborators provide information about Arctic ecosystems that are used by Arctic residents, management agencies, and industry. This fact sheet describes recent USGS assessments on focal species and important topic areas in the Arctic.

Alaska↗

Environmental quality and preservation; reefs, corals, and carbonate sands; guides to reef-ecosystem health and environment

Introduction In recent years, the health of the entire coral reef ecosystem that lines the outer shelf off the Florida Keys has declined markedly. In particular, loss of those coral species that are the building blocks of solid reef framework has significant negative implications for economic vitality of the region. What are the reasons for this decline? Is it due to natural change, or are human activities (recreational diving, ship groundings, farmland runoff, nutrient influx, air-borne contaminants, groundwater pollutants) a contributing factor and if so, to what extent? At risk of loss are biologic resources of the reefs, including habitats for endangered species in shoreline mangroves, productive marine and wetland nurseries, and economic fisheries. A healthy reef ecosystem builds a protective offshore barrier to catastrophic wave action and storm surges generated by tropical storms and hurricanes. In turn, a healthy reef protects the homes, marinas, and infrastructure on the Florida Keys that have been designed to capture a lucrative tourism industry. A healthy reef ecosystem also protects inland agricultural and livestock areas of South Florida whose produce and meat feed much of the United States and other parts of the world. In cooperation with the National Oceanic and Atmospheric Administration's (NOAA) National Marine Sanctuary Program, the U.S. Geological Survey (USGS) continues longterm investigations of factors that may affect Florida's reefs. One of the first steps in distinguishing between natural change and the effects of human activities, however, is to determine how coral reefs have responded to past environmental change, before the advent of man. By so doing, accurate scientific information becomes available for Marine Sanctuary management to understand natural change and thus to assess and regulate potential human impact better. The USGS studies described here evaluate the distribution (location) and historic vitality (thickness) of Holocene reefs in South Florida, relative to type of underlying bedrock morphology, and their varied natural response to rising sea level. These studies also assess movement and accumulation of sands, relative to direction of prevailing energy, and origin of the component sand grains. Geophysical data collected with highresolution sound-wave instruments that provide pictures of the sediment and bedrock are used to interpret sediment thickness. Reef thickness is determined by collecting limestone rock cores by drilling. Drill cores through reefs are used to identify the coral species that built them and to determine how reefs reacted to rising sea level. These data are supplemented by using isotope-dating techniques to derive the carbon-14 (C14) age of the corals and mangrove peat in the cores. Mangrove peat forms in very shallow water and at the shoreline but is found today buried beneath offshore reefs.

Open-File Report↗

Monitoring Ground-Water Quality in Coastal Ecosystems

INTRODUCTION The Cape Cod National Seashore (CACO) extends along more than 70 km of Atlantic Ocean open-beach coastline and includes three large saltwater bays - Wellfleet Harbor, Nauset Marsh, and Pleasant Bay (fig. 1). CACO encompasses about 18,000 ha of uplands, lakes, wetlands, and tidal lands (Godfrey and others, 1999) including most habitats typical of the sandy coast in National seashores and parks extending southward from Massachusetts to Florida. In 1995, CACO was selected by the National Park Service (NPS) as a prototype park typifying the Atlantic and Gulf Coast biogeographic region for long-term coastal ecosystem monitoring. The U.S. Geological Survey (USGS) is currently (2007) assisting the NPS in the development of protocols for a Long-Term Coastal Ecosystem Monitoring Program at the CACO in Massachusetts. The overall purpose of the monitoring program is to characterize both natural and human-induced change in the biological resources of the CACO, over a time scale of decades, in the context of a changing global ecosystem.

Open-File Report↗

Synthesis of age data and chronology for Florida Bay and Biscayne Bay cores collected for ecosystem history of South Florida’s estuaries project

210 Pb, 14 C, and pollen biostratigraphic data have been compiled and synthesized to develop age models for cores collected from Florida Bay and Biscayne Bay. These cores are being used to interpret the ecosystem history of south Florida’s estuaries by examining the physical, chemical, and biological record preserved within the cores. The beginning of the 20th century, which marks an important turning point for the natural vs. anthropogenically influenced ecosystem, has been identified based on at least two data points in ten cores. 210 Pb data alone are presented for an additional 38 cores. Age models for older sediments have been developed for seven cores. Comparison of pre-1900 and post-1900 records allows researchers to compare natural ecosystem changes to anthropogenic change. General patterns of sedimentation rates in Florida Bay and Biscayne Bay emerge from the data. Mid-bay mudbanks in both bays show more rapid rates of sedimentation, fewer signs of sediment disruption, and more internal consistency of sediments than cores located closer to shore. Nearshore cores indicate slower average rates of sedimentation, more disruption in the sedimentary sequences, and more indications of “old” carbon effects. Cores in close proximity to each other generally show very similar patterns of deposition, which indicates support for the age models.

Southern Florida↗

Project plan-Surficial geologic mapping and hydrogeologic framework studies in the Greater Platte River Basins (Central Great Plains) in support of ecosystem and climate change research

The Greater Platte River Basin area spans a central part of the Midcontinent and Great Plains from the Rocky Mountains on the west to the Missouri River on the east, and is defined to include drainage areas of the Platte, Niobrara, and Republican Rivers, the Rainwater Basin, and other adjoining areas overlying the northern High Plains aquifer. The Greater Platte River Basin contains abundant surficial deposits that were sensitive to, or are reflective of, the climate under which they formed: deposits from multiple glaciations in the mountain headwaters of the North and South Platte Rivers and from continental ice sheets in eastern Nebraska; fluvial terraces (ranging from Tertiary to Holocene in age) along the rivers and streams; vast areas of eolian sand in the Nebraska Sand Hills and other dune fields (recording multiple episodes of dune activity); thick sequences of windblown silt (loess); and sediment deposited in numerous lakes and wetlands. In addition, the Greater Platte River Basin overlies and contributes surface water to the High Plains aquifer, a nationally important groundwater system that underlies parts of eight states and sustains one of the major agricultural areas of the United States. The area also provides critical nesting habitat for birds such as plovers and terns, and roosting habitat for cranes and other migratory birds that travel through the Central Flyway of North America. This broad area, containing fragile ecosystems that could be further threatened by changes in climate and land use, has been identified by the USGS and the University of Nebraska-Lincoln as a region where intensive collaborative research could lead to a better understanding of climate change and what might be done to adapt to or mitigate its adverse effects to ecosystems and to humans. The need for robust data on the geologic framework of ecosystems in the Greater Platte River Basin has been acknowledged in proceedings from the 2008 Climate Change Workshop and in draft reports by researchers developing a multidisciplinary science plan for the Greater Platte River Basin.

Open-File Report↗

A conceptual framework for Lake Michigan coastal/nearshore ecosystems, with application to Lake Michigan Lakewide Management Plan (LaMP) objectives

The Lakewide Management Plans (LaMPs) within the Great Lakes region are examples of broad-scale, collaborative resource-management efforts that require a sound ecosystems approach. Yet, the LaMP process is lacking a holistic framework that allows these individual actions to be planned and understood within the broader context of the Great Lakes ecosystem. In this paper we (1) introduce a conceptual framework that unifies ideas and language among Great Lakes managers and scientists, whose focus areas range from tributary watersheds to open-lake waters, and (2) illustrate how the framework can be used to outline the geomorphic, hydrologic biological, and societal processes that underlie several goals of the Lake Michigan LaMP, thus providing a holistic and fairly comprehensive roadmap for tackling these challenges. For each selected goal, we developed a matrix that identifies the key ecosystem processes within the cell for each lake zone and each discipline; we then provide one example where a process is poorly understood and a second where a process is understood, but its impact or importance is unclear. Implicit in these objectives was our intention to highlight the importance of the Great Lakes coastal/nearshore zone. Although the coastal/nearshore zone is the important linkage zone between the watershed and open-lake zones—and is the zone where most LaMP issues are focused--scientists and managers have a relatively poor understanding of how the coastal/nearshore zone functions. We envision follow-up steps including (1) collaborative development of a more detailed and more complete conceptual model of how (and where) identified processes are thought to function, and (2) a subsequent gap analysis of science and monitoring priorities.

Lake Michigan↗