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At least 685 records · Page 38Linked to original sources

USGS2015

Contrasting fish assemblages in free-flowing and impounded tributaries to the Upper Delaware River: Implications for conserving biodiversity

The Neversink River and the Beaver Kill in southeastern New York are major tributaries to the Delaware River, the longest undammed river east of the Mississippi. While the Beaver Kill is free flowing for its entire length, the Neversink River is subdivided by the Neversink Reservoir, which likely affects the diversity of local fish assemblages and health of aquatic ecosystems. The reservoir is an important part of the New York City waster-supply system that provides drinking water to more than 9 million people. Fish population and community data from recent quantitative surveys at comparable sites in both basins were assessed to characterize the differences between free-flowing and impounded rivers and the extent of reservoir effects to improve our capacity to define ecosystems responses that two modified flow-release programs (implemented in 2007 and 2011) should produce in the Neversink River. In general, the continuum of changes in fish assemblages which normally occur between headwaters and mouth was relatively uninterrupted in the Beaver Kill, but disrupted by the mid-basin impoundment in the Neversink River. Fish assemblages were also adversely affected at several acidified sites in the upper Neversink River, but not at most sites assessed herein. The reservoir clearly excluded diadromous species from the upper sub-basin, but it also substantially reduced community richness, diversity, and biomass at several mid-basin sites immediately downstream from the impoundment. There results will aid future attempts to determine if fish assemblages respond to more natural, yet highly regulated, flow regimes in the Neversink River. More important, knowledge gained from this study can help optimize use of valuable water resources while promoting species of special concern, such as American eel (Anguilla rostrata) and conserving biodiversity in Catskill Mountain streams.

Book chapter↗

USGS1987

Evapotranspiration and microclimate at a low-level radioactive-waste disposal site in northwestern Illinois

From July 1982 through June 1984, a study was made of the microclimate and evapotranspiration at a low-level radioactive-waste disposal site near Sheffield, Bureau County, Illinois. Vegetation at the site consists of mixed pasture grasses, primarily brome (Bromus inermis) and red clover (Trifoleum pratense). Three methods were used to estimate evapotranspiration: (1) an energy-budget with the Bowen ratio, (2) an aerodynamic-profile, and (3) a soil-based water-budget. For the aerodynamic-profile method, sensible-heat flux was estimated by a profile equation and evapotranspiration was then calculated as the residual in the energy-balance equation. Estimates by the energy-budget and aerodynamic-profile methods were computed from hourly data, then summed by days and months. Yearly estimates for March through November, by these methods, were quite close--648 and 626 millimeters, respectively. Daily estimates range up to a maximum of about 6 millimeters. The water-budget method produced only monthly estimates based on weekly or biweekly soil-moisture content measurements. The yearly evapotranspiration estimated by this method (which actually included only the months of April through October) was 655 millimeters. The March-through-November average for the three methods of 657 millimeters was equivalent to 70 percent of precipitation. Continuous measurements were made of incoming and reflected shortwave radiation, incoming and emitted longwave radiation, net radiation, soil-heat flux, soil temperature, horizontal windspeed, and wet- and dry-bulb air temperature. Windspeed and air temperature were measured at heights of 0.5 and 2.0 meters (and also at 1.0 meter after September 1983). Soil-moisture content of the soil zone was measured with a gamma-attenuation gage. Annual precipitation (938 millimeters) and average temperature (10.8 degrees Celsius) were virtually identical to long-term averages from nearby National Weather Service stations. Solar radiation averaged 65 percent of that normally expected under clear skies. Net radiation averaged 70.1 watts per square meter and was highest in July and negative during some winter months. Wind direction varied but was predominately out of the south-southeast. Wind speed at the 2-meter height averaged 3.5 meters per second and was slightly higher in winter months than the rest of the year. The amount of water stored within the soil zone was greatest in early spring and least in late summer. Seasonal and diurnal trends in evapotranspiration rates mirrored those in net radiation; July was usually the month with the highest rate. The ratio of sensible- to latent-heat fluxes (commonly called the Bowen ratio) for the 2-year period was 0.38, as averaged from the three methods. Monthly Bowen ratios fluctuated somewhat but averaged about 0.35 for late spring through summer. In fall, the ratio declined to zero or to slightly negative values. When the ratio was negative, the latent-heat flux was slightly greater than the net radiation because of additional energy supplied by the cooling soil and air. Evapotranspiration calculated by the three methods averaged 75 percent of potential evapotranspiration, as estimated by the Penman equation. There was no apparent seasonal trend in the relation between actual and potential evapotranspiration rates.

Illinois↗

USGS2017

Variation and plasticity and their interaction with urbanization in Guadalupe Bass populations on and off the Edwards Plateau

The Colorado River Basin in Texas has experienced major alterations to its hydrologic regime due to changing land and water use patterns. These anthropogenic influences on hydrologic variability have had major implications for riparian and aquatic ecosystems and the species dependent upon them. However, impacts are often assessed at a limited temporal and spatial scale, tending to focus on relatively short and discrete periods or portions of a river basin. It is not clear how basin-wide alterations occurring over decades affect species. Guadalupe Bass Micropterus treculii are endemic to central Texas and are typically associated with shallow runs and riffles in small streams. However, Guadalupe Bass are found throughout the Colorado River Basin, including the mainstem portion of the lower river downstream of the city of Austin where they support a popular fishery. Because Guadalupe Bass exist across a wide range of stream orders within the basin, it is unclear whether populations respond similarly to anthropogenic disturbances or to conservation and restoration activities. Therefore, our objectives were to: Assess the effects of urbanization and hydrology on the population structure and dynamics of Guadalupe Bass. Evaluate the effects of environmental gradients on ecomorphological variation in Guadalupe Bass populations across multiple spatial scales. Describe the life history, habitat use, and behavior of the Guadalupe Bass population in the lower Colorado River and compare it to populations in more “typical” habitats. Results contribute to an understanding of the response of Guadalupe Bass to anthropogenic disturbances, including increased urbanization in central Texas and further assist in the conservation of the species. The ability of the population to not only persist, but flourish downstream of a heavily populated urban area presented a unique opportunity to investigate a native species response to anthropogenic disturbance. This research revealed differences in Guadalupe Bass habitat associations and movements, contrasts in age and growth, and morphological variation across a gradient of disturbance throughout the Colorado River Basin. Results of this work provide information on the potential effects of human population growth and increased water withdrawals on Guadalupe Bass populations. Additionally, this work adds to an understanding of the unique Guadalupe Bass population found in the lower Colorado River and how it differs from upstream tributary populations. Gathering additional population-level information facilitates conservation actions critical to preserving preferred habitat and promoting growth rates for Guadalupe Bass in streams of different sizes and flow conditions while highlighting interpopulation differences that may warrant consideration for stocking programs and other management strategies. Key findings of this study were: The similarity in response of growth rates to streamflow throughout the Colorado Basin suggests phenotypic plasticity in this trait rather than population-specific adaptations. Reductions in streamflows in the Colorado River Basin, whether due to increased frequency of drought or increased anthropogenic water withdrawal, will likely result in lower Guadalupe Bass growth rates with the potential to impact the structure of populations. Growth and recruitment showed a positive correlation with increased baseflows and mean monthly flows; however, continued assessment is necessary to determine a true relationship. We documented morphological divergence among Guadalupe Bass populations in response to spatial and temporal environmental variation. These ecomorphological differences among populations provide insight into the ability of Guadalupe Bass to respond to the differing in-stream habitat and flow conditions between small ‘typical’ tributary systems and the mainstem Colorado River. Morphological variation may be a population-level adaptation that potentially needs to be taken into consideration when choosing broodstock to maximize stocking success within a system. Understanding the morphological differences between Guadalupe Bass populations in response to local conditions could improve the success of restoration and supplemental stocking programs, especially in the ever-changing landscape of central Texas. We established a baseline for understanding the morphological response of Guadalupe Bass to increased population growth and the threats posed by increased water withdrawals and impervious surface. The mainstem population of Guadalupe Bass was generally more mobile, and more responsive to changes in streamflow, than tributary populations. The observed differences could influence the response of Guadalupe Bass populations to conservation and management actions, such as habitat restoration efforts. Continued monitoring of recruitment and angler exploitation may be beneficial to identify any changes that could negatively impact the population. Conservation initiatives solely focused on physical instream or riparian habitat are unlikely to be as beneficial to Guadalupe Bass as those focused on restoring or maintaining adequate streamflow

Cooperator Science Series↗

USGS1976

Sampling procedures and catalogue of samples for eight boreholes at Clear Lake, Lake County, California

Clear Lake, California, is situated in an area which has been subject to crustal movement, earthquake-generated ground shaking, volcanic eruptions, and climatic fluctuations during late Quaternary time. The U.S. Geological Survey, in cooperation with Lake County, has undertaken a study of the seismic, volcanic, and environmental history recorded in the late Quaternary sediments beneath the floor of the lake (Sims, 1974). This study is based on continuous core samples measuring 12 cm or 15 cm in diameter that were obtained in August-November, 1973, from 8 boreholes measuring 14-113 m in length (Figure 1). Preliminary description of many of these samples and interpretation of ancient seismic events can be found in Sims and Rymer (1975). Over 2,000 multiple samples have been taken from these cores in order to study the environmental record preserved in the lacustrine sediments. Samples were taken for pollen, diatoms, cladocera, bulk mineralogy, fine size analysis, macrofossils, and water-content/organic carbon-content at designated depths. In addition, volcanic ash and radiocarbon samples were removed for correlation studies and age determinations. This report provides a description of the standard sampling procedures designed for sapropelic muds and peat-rich clays, a description of modified sampling procedures developed for sampling sands and coarser sediments, and a catalogue of samples from the Clear Lake cores. Table 2 outlines the steps followed for the standard sampling procedures.

California↗

USGS2015

Stress and mass changes at a “wet” volcano: Example during the 2011–2012 volcanic unrest at Kawah Ijen volcano (Indonesia)

Since 2010, Kawah Ijen volcano has been equipped with seismometers, and its extremely acid volcanic lake has been monitored using temperature and leveling sensors, providing unprecedented time resolution of multiparametric data for an acidic volcanic lake. The nature of stress and mass changes of the volcano is studied by combining seismic analyses and volcanic lake measurements that were made during the strongest unrest ever recorded by the seismic network at Kawah Ijen. The distal VT earthquake swarm that occurred in May 2011 was the precursor of volcanic unrest in October 2011 that caused an increase in shallow earthquakes. The proximal VT earthquakes opened pathways for ﬂuids to ascend by increasing the permeability of the rock matrix. The following months were characterized by two periods of strong heat and mass discharge into the lake and by the initiation of monochromatic tremor (MT) activity when steam/gases interacted with shallow portions of the aquifer. Signiﬁcant seismic velocity variations, concurrent with water level rises in which water contained a large amount of steam/gas, were associated with the crises, that caused an although the unrest did not aﬀect the shallow hydrothermal system at a large scale. Whereas shallow VT earthquakes likely reﬂect a magmatic intrusion, MT and relative seismic velocity changes are clearly associated with shallow hydrothermal processes. These results will facilitate the forecast of future crises.

Kawah Ijen↗

USGS1947

Geology of the Borah Peak quadrangle, Idaho

This report is on result of a long program of geologic investigation in south-central Idaho, undertaken as an aid in the development of the mineral resources of the region. This quadrangle was examined because of the exceptional opportunities for the study of stratigraphy and structure afforded by the Lost River Range, which is the highest in Idaho and contains comparatively few intrusive igneous rocks. The Borah Peak quadrangle differs from the region to the west and northwest in that it contains parts of two sharply defined, narrow ranges elongated in a north-westerly direction, instead of broad, irregular mountain masses, in which the trends of most local topographic units are ill-defined. These ranges, the Lost River and the Lemhi, are flanked by intermontane valleys sparsely populated by stock ranchers. The Lemhi and Swauger quartzites, regarded as of Belt (pre-Cambrian) age, are named. The two Cambrian (?) formations of the Bayhorse region are not recognized in this quadrangle. The Ramshorn slate (Lower Ordovician), widespread and thick there, does not appear to be exposed anywhere in the Borah Peak quadrangle with the possible exception of small areas east of the Elkhorn Ranch, where relations are obscure. The higher Paleozoic formations, named in order of decreasing age, are the Kinnikinic quartzite, Saturday Mountain formation, Laketown dolomite, Jefferson dolomite, Grand View dolomite, Three Forks limestone, Milligen formation, Brazer limestone, and Wood River formation. The Three Forks limestone, nowhere much over 250 feet thick, is the only one of these not recognized farther west. It provides substantial aid in the interpretation of upper Paleozoic stratigraphy. Equivalent beds to the west are presumably grouped with the Milligen. The grit that introduced uncertainties into the correlation of the Wood River and Milligen formations in the southeastern part of the Bayhorse quadrangle is absent here, and both formations have close lithologic resemblances to those in the type localities in the Wood River region. Wood River strata (Pennsylvanian) crop out only in the southwest corner of the quadrangle, and the Brazer may have been the last Paleozoic unit to be deposited over most of the area. Certainly it can have had comparatively little cover over it throughout the Mesozoic. The Brazer is regarded as Mississippian, but some of the fossils in it have Pennsylvania affinities. The carbonate rocks in the Three Forks and later formations are dominantly calcareous, while those in earlier units are dolomitic. Carbonaceous matter is present in most of the formations but is abundant only in the Milligen. The Challis volcanics (Oligocene or Miocene) constitute the first stratified unit to be laid down after Paleozoic deposition ceased, although there was a little intrusive activity late in the Mesozoic. The volcanics were once widely distributed on the flanks of the mountains and are still plentiful in the northwestern corner of the quadrangle, near the head of the valley of the Pahsimeroi, and in smaller areas. They are neither so abundant nor so diversified as they are farther west. They are locally succeeded by an alluvial formation, here termed the Donkey fanglomerate, of possible Pliocene age. Abundant Quaternary glacial and alluvial deposits are present in the larger valleys. The Lemhi and Swauger quartzites were broadly folded before Paleozoic sedimentation began. Apparently the later deformation affected them only enough to render the more impure beds somewhat schistose. The Paleozoic rocks have been folded into closely spaced, asymmetric anticlines, locally broken by thrusts at and near their crests. These folds approximately parallel the trends of the present range, whereas those in the old rocks strike more nearly north. Later deformation twisted some of the folds and produced thrusts of lower dip and greater extent. The folded rocks in the Lost River Range have been arched into an anticlinorium. The original, tight folds may have preceded the emplacement of the Idaho batholith farther west, while the anticlinorium and the late twists and low thrusts result from deformation during the long period in which the batholith came to place and adjusted itself. Local intricately contorted beds in the Brazer limestone are interpreted as the effects of flowage in calcareous material subjected to tangential pressure under comparatively light supercumbent load. The quadrangle contains numerous normal faults of diverse trends. Most of those that can be conclusively demonstrated strike transverse to the trends of the ranges, but especially along parts of the southwest front of the Lemhi Range normal faults along the range fronts may have helped locally to guide erosion of the mountains. Some of the faults have displacements of thousands of feet and are thought to have originated in connection with the low-angle thrusts. Most of these, as well as minor breaks of diverse trends, affect also the Challis volcanics, which shows that renewed movement occurred in Tertiary time. The present mountain masses and broad intermontane valleys are in about the positions occupied by similar features in the early Tertiary. Several incomplete erosion cycles since then have greatly modified the topography but have not obliterated the influence of these ancient land forms. The results of early episodes in the development of the topography are much obscured by the rugged forms that result from active Pleistocene glaciation and later vigorous stream erosion, but modified remnants of the post-Challis and Donkey Hills surfaces can be clearly distinguished. Several less widespread remnants mark intermediate steps in the process. Exceptionally abundant and permeable, coarse alluvial and glacial deposits floor intermontane valleys and choke the larger mountain gorges to such an extent as to interfere with normal erosion and make the surface-water supplies even scantier than might be expected from the climate of the region, which is moderately humid in the mountains and semiarid in the valleys. Active erosion in the high mountains and comparatively static conditions on fans at the range borders result in striking contrasts.

Idaho↗

USGS2012

Lewis and Clark National Historical Park Elk Monitoring Program Annual Report 2010

Fiscal year 2010 was the second full year of elk monitoring protocol implementation at Lewis and Clark National Historical Park (LEWI), part of the North Coast and Cascades Network (NCCN) Inventory and Monitoring program. Elk monitoring at Lewis and Clark NHP includes two components. Fecal pellet surveys at a systematic sample of points in the Fort Clatsop unit are intended to give quantitative estimates of relative use by elk in that unit. Driving surveys on specified routes in and near the Fort Clatsop unit are intended to provide an index of elk viewing opportunities on those roads. Fecal pellet surveys include a fall clearing session and a late winter sampling session. Fall clearing from November 9 to November 17, 2009 included visits to 67 survey points. Late winter sampling from March 1 to March 8 2010 included repeat visits to 65 of those same points, but not to two others that had hazardous access or were under water. We detected elk fecal pellets in 30 points in the fall and at 30 points in the late winter. Three to four road surveys per month were conducted in each of the 12 months of fiscal year 2010 (i.e., October-December 2009 and January-September 2010). Data from those surveys will be entered, validated, certified, and analyzed following the acceptance of the peer-reviewed protocol and associated database. Data from FY09, FY10, and FY11 will be useful in the formal analyses of trend. Those three years of data will contribute to the preparation of a four-year analysis and report after only one more year. Quantitative estimates of relative use by elk throughout the Fort Clatsop unit will be provided in the four-year report in 2012. Those estimates will account for detection bias, which comes from an incomplete count of elk pellets that were present in the subplots at the time of survey.

Oregon↗

USGS1973

Hydrologic changes after clear-cut logging in a small Oregon coastal watershed

Preliminary graphical analysis indicates that clear-cut logging of a small Oregon watershed has significantly altered certain hydrologic characteristics. After logging, moderate increases were noted in annual runoff, but no significant changes were detected in either peak or minimum flow rates. Both the annual sediment yields and the maximum monthly water temperatures increased greatly after logging; sediment yields and temperatures in the unlogged control watershed actually decreased during the postlogging period.

Oregon↗

USGS2019

Modeling connectivity of non‐floodplain wetlands: Insights, approaches, and recommendations

Representing hydrologic connectivity of non‐floodplain wetlands (NFWs) to downstream waters in process‐based models is an emerging challenge relevant to many research, regulatory, and management activities. We review four case studies that utilize process‐based models developed to simulate NFW hydrology. Models range from a simple, lumped parameter model to a highly complex, fully distributed model. Across case studies, we highlight appropriate application of each model, emphasizing spatial scale, computational demands, process representation, and model limitations. We end with a synthesis of recommended “best modeling practices” to guide model application. These recommendations include: (1) clearly articulate modeling objectives, and revisit and adjust those objectives regularly; (2) develop a conceptualization of NFW connectivity using qualitative observations, empirical data, and process‐based modeling; (3) select a model to represent NFW connectivity by balancing both modeling objectives and available resources; (4) use innovative techniques and data sources to validate and calibrate NFW connectivity simulations; and (5) clearly articulate the limits of the resulting NFW connectivity representation. Our review and synthesis of these case studies highlights modeling approaches that incorporate NFW connectivity, demonstrates tradeoffs in model selection, and ultimately provides actionable guidance for future model application and development.

Journal of the American Water Resources Associatio↗

USGS2005

An integrated environmental tracer approach to characterizing groundwater circulation in a mountain block

The subsurface transfer of water from a mountain block to an adjacent basin (mountain block recharge (MBR)) is a commonly invoked mechanism of recharge to intermountain basins. However, MBR estimates are highly uncertain. We present an approach to characterize bulk fluid circulation in a mountain block and thus MBR that utilizes environmental tracers from the basin aquifer. Noble gas recharge temperatures, groundwater ages, and temperature data combined with heat and fluid flow modeling are used to identify clearly improbable flow regimes in the southeastern Salt Lake Valley, Utah, and adjacent Wasatch Mountains. The range of possible MBR rates is reduced by 70%. Derived MBR rates (5.5–12.6 × 10 4 m 3 d −1 ) are on the same order of magnitude as previous large estimates, indicating that significant MBR to intermountain basins is plausible. However, derived rates are 50–100% of the lowest previous estimate, meaning total recharge is probably less than previously thought.

Water Resources Research↗

USGS2016

A new look at liming as an approach to accelerate recovery from acidic deposition effects

Acidic deposition caused by fossil fuel combustion has degraded aquatic and terrestrial ecosystems in North America for over four decades. The only management option other than emissions reductions for combating the effects of acidic deposition has been the application of lime to neutralize acidity after it has been deposited on the landscape. For this reason, liming has been a part of acid rain science from the beginning. However, continued declines in acidic deposition have led to partial recovery of surface water chemistry, and the start of soil recovery. Liming is therefore no longer needed to prevent further damage, so the question becomes whether liming would be useful for accelerating recovery of systems where improvement has lagged. As more is learned about recovering ecosystems, it has become clear that recovery rates vary with watershed characteristics and among ecosystem components. Lakes appear to show the strongest recovery, but recovery in streams is sluggish and recovery of soils appears to be in the early stages. The method in which lime is applied is therefore critical in achieving the goal of accelerated recovery. Application of lime to a watershed provides the advantage of increasing Ca availability and reducing or preventing mobilization of toxic Al, an outcome that is beneficial to both terrestrial and aquatic ecosystems. However, the goal should not be complete neutralization of soil acidity, which is naturally produced. Liming of naturally acidic areas such as wetlands should also be avoided to prevent damage to indigenous species that rely on an acidic environment.

Science of the Total Environment↗

USGS2014

The effects of changing land cover on streamflow simulation in Puerto Rico

This study quantitatively explores whether land cover changes have a substantive impact on simulated streamflow within the tropical island setting of Puerto Rico. The Precipitation Runoff Modeling System (PRMS) was used to compare streamflow simulations based on five static parameterizations of land cover with those based on dynamically varying parameters derived from four land cover scenes for the period 1953-2012. The PRMS simulations based on static land cover illustrated consistent differences in simulated streamflow across the island. It was determined that the scale of the analysis makes a difference: large regions with localized areas that have undergone dramatic land cover change may show negligible difference in total streamflow, but streamflow simulations using dynamic land cover parameters for a highly altered subwatershed clearly demonstrate the effects of changing land cover on simulated streamflow. Incorporating dynamic parameterization in these highly altered watersheds can reduce the predictive uncertainty in simulations of streamflow using PRMS. Hydrologic models that do not consider the projected changes in land cover may be inadequate for water resource management planning for future conditions.

Journal of the American Water Resources Associatio↗

USGS1995

Nutrient loading to Lewisville Lake, north-central Texas, 1984-87

Concentrations of nutrients in the streams of the 1,660-square-mile Lewisville Lake drainage basin have some association with the two types of physiographic regions in the basin prairie regions and cross timbers regions. Total nitrogen and phosphorus concentrations generally are larger in streams draining the prairie regions than in streams draining the cross timbers regions, a characteristic that might be accounted for in part by the fact that prairie regions tend to have more nutrient-rich, less-permeable soils than cross timbers regions. Most of the variability in nutrient loads is associated with variability in discharge. During a low-flow synoptic survey, the largest contributor of total nitrogen and total phosphorus (at the downstream-most site) was Isle du Bois Creek (815 pounds per day of total nitrogen and 146 pounds per day of total phosphorus). During a high-flow synoptic survey, the largest contributor of total nitrogen and total phosphorus (at the downstream-most site) was Elm Fork Trinity River (4,620 pounds per day of total nitrogen and 210 pounds per day of total phosphorus). On the basis of results of stormflow and periodic sampling, the total nitrite plus nitrate nitrogen that entered the reservoir on the average each day during 1986 was 5,640 pounds per day, and during 1987,4,480 pounds per day. During the same period, about one and one-half as much nitrogen in the form of total ammonia plus organic nitrogen entered the reservoir (8,530 pounds per day in 1986 and 7,020 pounds per day in 1987); and about one-fourth as much total phosphorus entered the reservoir during the period (1,310 pounds per day in 1986 and 1,080 pounds per day in 1987). Point sources accounted for small fractions (probably less than 10 percent) of the total nutrient load from Clear Creek, Little Elm Creek, Hickory Creek, and Elm Fork Trinity River. Most of the point-source load to Lewisville Lake could originate at a few sewage-treatment plants discharging to ungaged streams close to the reservoir. The estimated long-term (1974-89 water years) average annual total nitrogen load (excluding loads from sewage-treatment plants in ungaged areas) is 11,800 pounds per day. The estimated long-term (1974 89 water years) average annual total phosphorus load (excluding loads from sewage-treatment plants in ungaged areas) is 1,100 pounds per day.

Texas↗

USGS2014

Impact of stressors on transmission potential of Renibacterium salmoninarum in Chinook salmon

Renibacterium salmoninarum is the causative agent of bacterial kidney disease (BKD) affecting several species of Pacific salmon. The severity of BKD can range from a chronic infection to overt disease with high mortality as in the case of large losses of adult Chinook salmon ( Oncorhynchus tshawytscha ) in the Great Lakes during late 1980s. The goal of this study was to empirically evaluate how environmental stressors relevant to the Great Lakes impact R. salmoninarum disease progression and bacterial shedding, the latter parameter being a proxy of horizontal transmission. In the first study (Aim 1), we focused on how endogenous host thiamine levels and dietary fatty acids impacted resistance of Chinook salmon to R. salmoninarum . Juvenile fish were fed one of four experimental diets, including a (1) thiamine replete diet formulated with fish oil, (2) thiamine deplete diet formulated with fish oil, (3) thiamine replete diet formulated with soybean oil, and (4) thiamine deplete diet formulated with soybean oil, before being challenged with buffer or R. salmoninarum . We observed significantly higher mortality in the R. salmoninarum infected groups relative to the corresponding mock controls in only the thiamine replete diet groups. We also observed a significant effect of time and diet on kidney bacterial load and bacterial shedding, with a significant trend towards higher shedding and bacterial load in the fish oil – thiamine replete diet group. However, during the course of the study, unexpected mortality occurred in all groups attributed to the myxozoan parasite Ceratomyxa shasta . Since the fish were dually-infected with C. shasta , we evaluated parasite DNA levels (parasitic load) in the kidney of sampled fish. We found that parasite load varied across time points but there was no significant effect of diet. However, parasite load did differ significantly between the mock and R. salmoninarum challenge groups with a trend towards longer persistence of C. shasta DNA in fish dually-infected with R. salmoninarum . Overall, results in Aim 1 indicated: 1) that the experimental diets impacted bacterial but not parasitic infection patterns, 2) that low thiamine levels may reduce the severity of R. salmoninarum infection, and 3) that fish infected with R. salmoninarum may be less able to clear a secondary infection with a parasite. The second study (Aim 2) focused on the role that temperature plays in the progression of BKD from the asymptomatic infected state to a diseased state. Lake Michigan Chinook salmon were infected with R. salmoninarum at a common intermediate water temperature and, at 2 weeks post-infection, were split into three temperature groups (cool, intermediate and warm). Fish held at the cool temperature (8°C) had significantly greater mortality following challenge, significantly higher levels of bacteria in the kidney, and shed significantly greater amounts of bacteria into the water relative to fish held at the intermediate (12°C) and warm (15°C) temperatures. Thus, our results support the hypothesis that, for BKD, warm temperature stress does not contribute to greater disease progression and increased bacterial shedding. Our laboratory results are consistent with field epidemiological observations that BKD mortality in the Great Lakes is commonly associated with declining water temperatures in the fall or when water temperatures begin to increase but are still cool after over-wintering.

Report↗

USGS2008

Isotope geochemistry of mercury in source rocks, mineral deposits and spring deposits of the California Coast Ranges, USA

We present here the first study of the isotopic composition of mercury in rocks, ore deposits, and active spring deposits from the California Coast Ranges, a part of Earth's crust with unusually extensive evidence of mercury mobility and enrichment. The Franciscan Complex and Great Valley Sequence, which form the bedrock in the California Coast Ranges, are intruded and overlain by Tertiary volcanic rocks including the Clear Lake Volcanic Sequence. These rocks contain two types of mercury deposits, hot-spring deposits that form at shallow depths (< 300??m) and silica-carbonate deposits that extend to depths of 1000??m. Active springs and geothermal areas continue to precipitate Hg and Au and are modern analogues to the fossil hydrothermal systems preserved in the ore deposits. The Franciscan Complex and Great Valley Sequence contain clastic sedimentary rocks with higher concentrations of mercury than volcanic rocks of the Clear Lake Volcanic Field. Mean mercury isotopic compositions (??202Hg) for all three rock units are similar, although the range of values in Franciscan Complex rocks is greater than in either Great Valley or Clear Lake rocks. Hot spring and silica-carbonate mercury deposits have similar average mercury isotopic compositions that are indistinguishable from averages for the three rock units, although ??202Hg values for the mercury deposits have a greater variance than the country rocks. Precipitates from spring and geothermal waters in the area have similarly large variance and a mean ??202Hg value that is significantly lower than the ore deposits and rocks. These observations indicate that there is little or no isotopic fractionation (< ?? 0.5???) during release of mercury from its source rocks into hydrothermal solutions. Isotopic fractionation does appear to take place during transport and concentration of mercury in deposits, however, especially in their uppermost parts. Boiling of hydrothermal fluids, separation of a mercury-bearing CO2 vapor or reduction and volatilization of Hg(0) in the near-surface environment are likely the most important processes causing the observed Hg isotope fractionation. This should result in the release of mercury with low ??202Hg values into the atmosphere from the top of these hydrothermal systems. Estimates of mass balance suggest that residual Hg reservoirs are not measurably enriched in heavy Hg isotopes as a result of this process because only a small amount of Hg (< 4%) leaves actively ore-forming systems. ?? 2008 Elsevier B.V. All rights reserved.

Earth and Planetary Science Letters↗

USGS2024

Metal mobilization from thawing permafrost to aquatic ecosystems is driving rusting of Arctic streams

Climate change in the Arctic is altering watershed hydrologic processes and biogeochemistry. Here, we present an emergent threat to Arctic watersheds based on observations from 75 streams in Alaska’s Brooks Range that recently turned orange, reflecting increased loading of iron and toxic metals. Using remote sensing, we constrain the timing of stream discoloration to the last 10 years, a period of rapid warming and snowfall, suggesting impairment is likely due to permafrost thaw. Thawing permafrost can foster chemical weathering of minerals, microbial reduction of soil iron, and groundwater transport of metals to streams. Compared to clear reference streams, orange streams have lower pH, higher turbidity, and higher sulfate, iron, and trace metal concentrations, supporting sulfide mineral weathering as a primary mobilization process. Stream discoloration was associated with dramatic declines in macroinvertebrate diversity and fish abundance. These findings have considerable implications for drinking water supplies and subsistence fisheries in rural Alaska.

Alaska↗

USGS1996

Holocene paleoenvironments of Northeast Iowa

This paper presents the biotic, sedimentary, geomorphic, and climatic history of the upper part of the Roberts Creek Basin, northeastern Iowa for the late—glacial and Holocene, and compares these records with a C—O isotopic sequence from Coldwater Cave, 60 km northwest of Roberts Creek. The biotic record (pollen, vascular plant and bryophyte macrofossils, and insects) is preserved in floodplain alluvium that underlies three constructional surfaces separated by low scarps. Each surface is underlain by a lithologically and temporally distinct alluvial fill. The highest surface is underlain by the Gunder Member of the Deforest Formation, dating from 11 000 to 4000 yr BP; beneath the intermediate level is the Roberts Creek Member, dating from 4000 to 400 yr BP; and the lowest level is underlain by the Camp Creek Member, deposited during the last 380 yr. Pollen and plant macrofossils in the alluvial fill show that a typical late—glacial spruce forest was replaced by Quercus and Ulmus in the early Holocene. This early—to—middle Holocene forest became dominated by mesic elements such as Acer saccharum, Tilia americana, Ostrya virginiana, and Carpinus caroliniana as late as 5500 yr BP; in contrast, the closest sites to the west and north were at their warmest and driest and were covered by prairie vegetation between 6500 and 5500 yr BP. After 5500 yr BP, the forest in the Roberts Creek area was replaced by prairie, as indicated by a rich assemblage of plant macrofossils, although only Ambrosia and Poaceae became abundant in the pollen record. The return of Quercus ≈ 3000 BP (while nonarboreal pollen percentages remained relatively high) indicates that oak savanna prevailed with little change until settlement time. The bryophyte assemblages strongly support the vascular plant record. Rich fen species characteristic of boreal habitats occur only in the late—glacial. They are replaced by a number of deciduous—forest elements when early—to—middle Holocene forests were present, but mosses of forest habitats completely disappear when prairie became dominant. A few deciduous—forest taxa return during the late—Holocene, when oak savanna prevailed. The C—O isotopic record from stalagmite s in Coldwater Cave indicates a relatively stable environment from ≈ 8000 to 5100 yr BP, when the δ 13 C values indicate a change in vegetation dominated by C 3 (predominantly forest) to C 4 (predominantly prairie) plants. About 4900 yr BP, the rise in 18 O values indicates a temperature increase of ≈ 1.5 ° C. The fact that the vegetational change suggested by the δ 13 C values preceded the temperature increase suggests that fire may have been an important factor in converting forest to prairie. Abundant charred seeds and other plant material at Roberts Creek 4830 yr BP support this hypothesis. The 18 O values remain constant from ≈ 5100 to ≈ 3000 yr BP, but the δ 13 C values gradually rise, indicating that soil formed under forest takes at least 2000 yr for its carbon to reach equilibrium after replacement by prairie vegetation. The return of oak to form savanna is reflected in the gradual decline of δ 13 C values in the last 3000 yr BP; O isotopic values drop sharply by ≈ 1 ° C ≈ 2800 yr BP and then were relatively stable. In contrast to the vegetational and isotopic records, the insect assemblages suggest little change in the local environments throughout most of the Holocene. All of the beetle taxa presently occur in eastern Iowa. The relative stability through the Holocene indicates that both open grassland and riparian woodland elements were present throughout. Settlement, land clearing, and land cultivation by EuroAmericans in the region caused rapid erosion of the upland landscape, the deposition of 1—2 m of sediment across the floodplain, a replacement of the native vegetation with ruderal species, a decimation of the native insect fauna, and a degradation of water quality in the stream. These changes in the landscape, vegetation, and insect faunas are as striking as those associated with glacial—interglacial transitions. The timing and direction of changes in the vegetation at Roberts Creek generally correlate well with the carbon and oxygen isotopic record in speleothems at nearby Coldwater Cave and indicate that climate was the main forcing function. However, the contrast between the vegetational change and the stability of the beetle population suggests that climatic changes were subtle. We hypothesize that the factors involved in the Holocene changes were seasonal changes in temperature and precipitation that may not have resulted in much mean annual change. Such changes may have affected the vegetation more than the insect fauna.

Iowa↗

USGS2025

Science needs for determining the effects of climate change on harmful algal blooms in the southeastern United States

The Southeastern United States has many lakes, streams, and reservoirs that serve as important drinking water sources with recreational, agricultural, and ecological uses. However, harmful algal blooms (HABs) are becoming more common in these waters, causing health issues for humans and animals. HABs have been listed as a contaminant of emerging concern, and the magnitude, frequency, and duration of HABs appear to be increasing at the global scale. While it is well known that nutrients stimulate algae growth, it is not clear how climate change and other parameters stimulate the development of toxin production by HABs. The scientific literature describes parameters, such as storm occurrence, temperature, dissolved metals, erosion of soils, increasing length of growing season, discharge, and hydroperiod, that may affect algae growth and toxin production. Climate and hydrologic models address many of the physical and environmental parameters that influence HABs, but no climate models directly address HABs. This report compiles information from the existing literature pertaining to HABs and the modeling and forecasting of HABS. This compilation is done through the incorporation of climate change models. HAB research that involves climate change will require multiple disciplines that bring together ecologists, hydrologists, climatologists, engineers, economists, and new technology. Resource managers could use geographic data about the occurrence and distribution of HABs to develop models that identify waterbodies more vulnerable to HAB events. Development of such models will require teams capable of integrating biological, chemical, and physical factors. Model development will require additional research that can resolve anthropogenic and climate-related environmental factors to identify trends in freshwater HABs. The complexity and interconnectedness of the parameters that influence HAB occurrences will make model development challenging and require rigorous regional calibration.

Open-File Report↗