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USGS2023

Selenium hazards in the Salton Sea environment—Summary of current knowledge to inform future wetland management

Quaternary marine and continental shales in the western United States are sources of selenium that can be loaded into the aquatic environment through mining, agricultural, and energy production processes. The mobilization of selenium from shales through agricultural irrigation has been recognized since the 1930s; however, discovery of deformities in birds and other wildlife using agricultural habitats during the 1980s spurred studies to determine the extent and effects of the contamination. Through these early studies, researchers determined that biota in the Salton Sea drainage basin was at risk from legacy selenium contamination in the Colorado River watershed. The Salton Sea and its surrounding managed and unmanaged wetlands provide vital inland habitat and trophic support for diverse assemblages of resident and migratory wildlife, and understanding regional selenium hazards for these trust species is a priority for many Federal and State agencies. The modern Salton Sea is a shallow, landlocked saline lake in Riverside and Imperial Counties (not shown) of California that is sustained by irrigation return and perennial river inflow. Changes in water transfer agreements under the 2003 Quantification Settlement Agreement (QSA) have resulted in reduced irrigation flow, declining lake levels, and the evolution of unmanaged wetlands in areas where drains and rivers no longer reach the Salton Sea. These wetlands provide additional habitat for some species of concern, but their potential to increase selenium hazards for trust species is largely unknown. From the 1980s to 2020, efforts to document selenium contamination and effects throughout the region have resulted in a considerable amount of selenium data from the Salton Sea and its surrounding drainage basin; however, no long-term (greater than 20 years), consistent sampling program has been established, and all data have been collected by different entities using a variety of protocols and analytical techniques. This lack of coordination has been previously documented in regional management plans and has led to difficulty in reliably assessing selenium hazards in the Salton Sea environment. This report provides a summary of the available disparate selenium information collected from water, sediment, and biota in the Salton Sea region since the 1980s and to identify data gaps that need to be filled to understand the potential effects of selenium on species of concern, including federally endangered desert pupfish ( Cyprinodon macularius ) and Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis; formerly Yuma Clapper Rail, Rallus longirostris yumanensis ). Available data from the Salton Sea drainage basin show that water from the Colorado River has the lowest selenium concentration of all surface water sources. All other surface water flowing into the Salton Sea has elevated selenium concentrations due to evaporation and evapotranspiration that occurs in agricultural fields and associated water delivery infrastructure or leaching of selenium from irrigated farmland soils. The Salton Sea has lower selenium concentrations because of various biogeochemical processes that recycle selenium into the sediment or volatilize it to the atmosphere; however, these mechanisms are not well defined, and it is not clear if selenium cycling will change in response to possible changes in the oxidation state of the Salton Sea bottom waters as water levels decline. Agricultural drains have the highest average selenium concentrations, but few drains have been sampled since changes in irrigation practices have occurred (due to the 2003 QSA). Groundwater selenium concentrations are variable; some wells south of the Salton Sea have selenium concentrations as high as 300 micrograms per liter (µg/L), whereas selenium concentrations are below detection in other wells. Groundwater and surface-water geothermal discharge zones around the margins of the Salton Sea and in unmanaged wetlands have not been studied in detail, and published selenium measurements are not available for these surface features. Selenium concentrations in the sediment of the Salton Sea drainage basin are highest in wetland particulate organic matter and the Salton Sea lakebed, indicating that removal of selenium from the water to the sediment has been a primary mechanism for keeping selenium concentrations low in the water column. Sediment selenium concentrations in wetlands are lower than in the Salton Sea but higher than inflowing drains and rivers, indicating the lentic wetland sites also may be important sinks for selenium because of biogeochemical processes. Sediment selenium data have not been collected in agricultural drains since changes in irrigation practices occurred (due to the 2003 QSA), and it is unknown if selenium sequestration from the water column has changed in these systems. We divided biological data into broad taxonomic categories, including primary producers, invertebrates, herpetofauna, mammals, fishes, and birds to facilitate evaluation of selenium concentrations and spatiotemporal trends observed in the Salton Sea. Overall, selenium concentrations were substantially greater in algae samples compared to all vascular plant samples combined. Median selenium concentrations in several invertebrate taxa (Chironomidae, Formicidae, Corixidae, Corbiculidae and Nereididae, and Decapoda) exceeded the maximum suggested dietary threshold of 3.0–4.0 micrograms per gram (µg/g) dry weight (dw) for predators consuming invertebrates in aquatic food webs. The greatest number of samples were collected from fish, and selenium distributions among species and locations showed that the range for most samples was lower than the U.S. Environmental Protection Agency selenium criterion for aquatic life (8.5 µg/g dw whole body, 11.3 µg/g dw fillets). The median selenium concentrations for whole body fish were below the selenium criterion in most locations, except for bairdiella ( Bairdiella icistia ) from the Salton Sea and irrigation drains, a few individual tilapia spp. (family Cichlidae, including genera Tilapia, Oreochromis , and their hybrids) from the river and river outlets, and several western mosquitofish ( Gambusia affinis ) and sailfin molly ( Poecilia latipinna ) from irrigation drain outlets. For avian samples combined among years and locations, median selenium concentrations in livers from all families except waders and Ibis (family Threskiornithidae) were higher than levels expected to cause selenium toxicosis (10–20 µg/g dw), and all median egg concentrations were above or near 6.0 μg/g dw, which is a conservative threshold value for reproductive impairment. Most knowledge gaps we identified for water, sediment, and biota were interrelated, and the use of integrated approaches to address knowledge gaps can provide greater insight into the drivers behind selenium hazards. Integrated water, sediment, and biota studies could help identify cost-effective management solutions that serve multiple purposes. A comprehensive analysis of the hydrology, biogeochemistry, and food-web processes in wetlands and other habitats can inform predictive models to identify drivers of selenium bioavailability, uptake from the environment and subsequent trophic transfer, ultimately forming the basis for experimental habitat management manipulations to minimize selenium hazards to wildlife. Furthermore, a comprehensive, long-term sampling and analytical laboratory plan would enable comparison of data among different entities that are sampling at the Salton Sea. Such efforts are well suited to help fill knowledge gaps that preclude understanding of selenium hazards and future management options for biota using Salton Sea habitats, including newly formed wetlands throughout the region. All data compiled for this report are available in two U.S. Geological Survey data releases: Groover and others (2022) for water and sediment samples and De La Cruz and others (2022) for biological samples. The data releases include all publicly available data for selenium concentrations in water, sediment, and biological samples collected in and around the Salton Sea, including the Coachella and Imperial Valleys. The data releases also include previously unpublished data.

California↗

USGS2025

Efficacy of oblique bubble screen deterrents on redirecting live eggs and larvae of grass carp (Ctenopharyngodon idella) at different developmental stages

Invasive carp have severely damaged aquatic ecosystems in the USA, particularly in the Mississippi River Basin. Behavioral deterrents have been developed in the last few decades to control population expansion into new ecosystems. However, none of these deterrents are capable of controlling early-life stage carp, which have limited or no mobility during their drifting stage in rivers. Capturing eggs and larvae in large numbers warrants new methods due to their distinct physical and biological properties as well as their lack of behavioral response. We tested a novel method to redirect downstream drifting eggs and larvae for their efficient removal in streams using an oblique bubble screen (OBS) deterrent. We investigated the effects of mean water velocity and airflow rate on redirection of eggs, pre-gas bladder inflation (GBI) larvae, near-GBI larvae, and dead larvae. Although similar OBS configurations had shown high efficacy redirecting plastic spheres (egg surrogates) in previous studies, they underperform redirecting live eggs and larvae. However, distinct patterns were identified for eggs, pre-GBI, near-GBI, and dead larvae. A detailed hydrodynamic analysis showed that eggs closely follow the larger scales of motions created by the OBS, and that larvae can actively respond to turbulence cues. This study yielded new insights into the movement of early-life stage grass carp in a turbulent flow with strong recirculation, and provided important data to improve the design of bubble screen dispersal barriers for invasive carp management and population control.

Water Resources Research↗

USGS2013

Evaluating analytical approaches for estimating pelagic fish biomass using simulated fish communities

Pelagic fish assessments often combine large amounts of acoustic-based fish density data and limited midwater trawl information to estimate species-specific biomass density. We compared the accuracy of five apportionment methods for estimating pelagic fish biomass density using simulated communities with known fish numbers that mimic Lakes Superior, Michigan, and Ontario, representing a range of fish community complexities. Across all apportionment methods, the error in the estimated biomass generally declined with increasing effort, but methods that accounted for community composition changes with water column depth performed best. Correlations between trawl catch and the true species composition were highest when more fish were caught, highlighting the benefits of targeted trawling in locations of high fish density. Pelagic fish surveys should incorporate geographic and water column depth stratification in the survey design, use apportionment methods that account for species-specific depth differences, target midwater trawling effort in areas of high fish density, and include at least 15 midwater trawls. With relatively basic biological information, simulations of fish communities and sampling programs can optimize effort allocation and reduce error in biomass estimates.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2015

Upstream dispersal of an invasive crayfish aided by a fish passage facility

Fish passage facilities for reservoir dams have been used to restore habitat connectivity within riverine networks by allowing upstream passage for native species. These facilities may also support the spread of invasive species, an unintended consequence and potential downside of upstream passage structures. We documented dam passage of the invasive virile crayfish, Orconectes virilis (Hagen, 1870), at fish ladders designed for upstream passage of American eels, Anguilla rostrata (Lesueur, 1817), in the Shenandoah River drainage, USA. Ladder use and upstream passage of 11 virile crayfish occurred from 2007–2014 during periods of low river discharge (<30 m 3 s –1 ) and within a wide range of water temperatures from 9.0–28.6 °C. Virile crayfish that used the eel ladders were large adults with a mean carapace length and width of 48.0 mm and 24.1 mm, respectively. Our data demonstrated the use of species-specific fish ladders by a non-target non-native species, which has conservation and management implications for the spread of aquatic invasive species and upstream passage facilities. Specifically, managers should consider implementing long-term monitoring of fish passage facilities with emphasis on detection of invasive species, as well as methods to reduce or eliminate passage of invasive species.

Virginia, West Virginia↗

USGS2013

Predicting the toxicity of metal mixtures

The toxicity of single and multiple metal (Cd, Cu, Pb, and Zn) solutions to trout is predicted using an approach that combines calculations of: (1) solution speciation; (2) competition and accumulation of cations (H, Ca, Mg, Na, Cd, Cu, Pb, and Zn) on low abundance, high affinity and high abundance, low affinity biotic ligand sites; (3) a toxicity function that accounts for accumulation and potency of individual toxicants; and (4) biological response. The approach is evaluated by examining water composition from single metal toxicity tests of trout at 50% mortality, results of theoretical calculations of metal accumulation on fish gills and associated mortality for single, binary, ternary, and quaternary metal solutions, and predictions for a field site impacted by acid rock drainage. These evaluations indicate that toxicity of metal mixtures depends on the relative affinity and potency of toxicants for a given aquatic organism, suites of metals in the mixture, dissolved metal concentrations and ratios, and background solution composition (temperature, pH, and concentrations of major ions and dissolved organic carbon). A composite function that incorporates solution composition, affinity and competition of cations for two types of biotic ligand sites, and potencies of hydrogen and individual metals is proposed as a tool to evaluate potential toxicity of environmental solutions to trout.

Science of the Total Environment↗

USGS2012

Semi-discrete biomass dynamic modeling: an improved approach for assessing fish stock responses to pulsed harvest events

Continuous harvest over an annual period is a common assumption of continuous biomass dynamics models (CBDMs); however, fish are frequently harvested in a discrete manner. We developed semidiscrete biomass dynamics models (SDBDMs) that allow discrete harvest events and evaluated differences between CBDMs and SDBDMs using an equilibrium yield analysis with varying levels of fishing mortality ( F ). Equilibrium fishery yields for CBDMs and SDBDMS were similar at low fishing mortalities and diverged as F approached and exceeded maximum sustained yield ( F MSY ). Discrete harvest resulted in lower equilibrium yields at high levels of F relative to continuous harvest. The effect of applying harvest continuously when it was in fact discrete was evaluated by fitting CBDMs and SDBDMs to time series data generated from a hypothetical fish stock undergoing discrete harvest and evaluating parameter estimates bias. Violating the assumption of continuous harvest resulted in biased parameter estimates for CBDM while SDBDM parameter estimates were unbiased. Biased parameter estimates resulted in biased biological reference points derived from CBDMs. Semidiscrete BDMs outperformed continuous BDMs and should be used when harvest is discrete, when the time and magnitude of harvest are known, and when F is greater than F MSY .

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2014

Does water chemistry affect the dietary uptake and toxicity of silver nanoparticles by the freshwater snail Lymnaea stagnalis ?

Silver nanoparticles (AgNPs) are widely used in many applications and likely released into the aquatic environment. There is increasing evidence that Ag is efficiently delivered to aquatic organisms from AgNPs after aqueous and dietary exposures. Accumulation of AgNPs through the diet can damage digestion and adversely affect growth. It is well recognized that aspects of water quality, such as hardness, affect the bioavailability and toxicity of waterborne Ag. However, the influence of water chemistry on the bioavailability and toxicity of dietborne AgNPs to aquatic invertebrates is largely unknown. Here we characterize for the first time the effects of water hardness and humic acids on the bioaccumulation and toxicity of AgNPs coated with polyvinyl pyrrolidone (PVP) to the freshwater snail Lymnaea stagnalis after dietary exposures. Our results indicate that bioaccumulation and toxicity of Ag from PVP-AgNPs ingested with food are not affected by water hardness and by humic acids, although both could affect interactions with the biological membrane and trigger nanoparticle transformations. Snails efficiently assimilated Ag from the PVP-AgNPs mixed with diatoms (Ag assimilation efficiencies ranged from 82 to 93%). Rate constants of Ag uptake from food were similar across the entire range of water hardness and humic acid concentrations. These results suggest that correcting regulations for water quality could be irrelevant and ineffective where dietary exposure is important.

Environmental Pollution↗

USGS1999

Canal and wetland flow transport interaction; coupling models for canal and wetland interactions in the South Florida ecosystem

Introduction The U.S. Geological Survey is one of several agencies participating in the scientific effort to provide knowledge that can help protect and preserve the ecosystem of south Florida. One project of the intergovernmental South Florida Ecosystem Program (SFEP) is focused on developing a computer model to simulate the flow of water and analyze the transport of waterborne chemical constituents between canals and wetlands. Quantification of dynamic flows within the south Florida ecosystem is vital to understanding the implications of the residence time of water, potentially nutrient-enriched (with nitrates or phosphates) or contaminant-laden (with metals or pesticides), that can alter plant life and affect biological communities. Nutrients carried in the water conveyed by canals draining agricultural areas and dispersed into wetlands by canal discharges, by levee overflows, or by seepage are considered to be a major contributor to changes in the types of vegetation found in the Everglades. Freshwater inflows, typically of varying magnitudes and durations, not only influence the salinity of Florida Bay but also potentially carry toxic substances that can affect and alter the Bay's aquatic biota. The simulation capability being developed within the SFEP can be useful for identifying approaches to alleviate adverse impacts of excessive or deficient flows and transported constituents. Through strategic use of a simulation model, cause-and-effect relations between discharge sources, flow magnitudes, transport processes, and changes in vegetation and biota can be investigated. The effects of driving forces on nutrient cycling and contaminant transport can then be quantified, evaluated, and considered in the development of remedial management plans.

Florida↗

USGS2023

A review of grass carp and related species literature on diet, behavior, toxicology, and physiology focused on informing development of controls for invasive grass carp populations in North America

Grass carp ( Ctenopharyngodon idella ) are globally important in aquaculture and aquatic vegetation control. However, escaped grass carp have established invasive populations. A targeted keyword search was performed on a carp (order: Cypriniformes) literature database maintained by the U.S. Geological Survey to identify literature relevant to grass carp. Additional sources cited in reviewed documents and provided by numerous reviewers were also included. There were three focus areas designed to provide support for invasive grass carp management: (1) diet and behavior; (2) physiological constraints, toxicity, and biology; and (3) gut physiology. Each focus area provides information to guide development of potential pathways for invasive grass carp control. Information from other carp species was used to fill in gaps where grass carp information was lacking and provide additional, potential research directions. Diet-related information included food selection and aquacultural diet formulations. Behavioral information included stimuli and non-physical barriers to attract, repel, or stop movement. Physiological constraints, toxicology, reproductive control, and biological control provide a research review for control options. Gut physiology and related control pathways provide knowledge to improve toxin or pathogen delivery. This review provides a basis for developing approaches and research for controlling invasive grass carp populations, aquaculture, and native population management.

Fishes↗

USGS2012

Biomedical health assessments of the Florida manatee in Crystal River - providing opportunities for training during the capture, handling, and processing of this endangered aquatic mammal

Federal and state researchers have been involved in manatee (Trichechus manatus) biomedical health assessment programs for a couple of decades. These benchmark studies have provided a foundation for the development of consistent capture, handling, and processing techniques and protocols. Biologists have implemented training and encouraged multi-agency participation whenever possible to ensure reliable data acquisition, recording, sample collection, publication integrity, and meeting rigorous archival standards. Under a U.S. Fish and Wildlife Service wildlife research permit granted to the U.S. Geological Survey (USGS) Sirenia Project, federal biologists and collaborators are allowed to conduct research studies on wild and captive manatees detailing various aspects of their biology. Therefore, researchers with the project have been collaborating on numerous studies over the last several years. One extensive study, initiated in 2006 has focused on health and fitness of the winter manatee population located in Crystal River, Florida. During those health assessments, capture, handling, and work-up training has been afforded to many of the participants. That study has successfully captured and handled 123 manatees. The data gathered have provided baseline information on manatee health, reproductive status, and nutritional condition. This research initiative addresses concerns and priorities outlined in the Florida Manatee Recovery Plan. The assessment teams strive to continue this collaborative effort to help advance our understanding of health-related issues confronting manatees throughout their range and interlacing these findings with surrogate species concepts.

Florida↗

USGS2026

Effects of carbamazepine to visual function in early life stage fish

The frequent detection of pharmaceuticals and personal care products (PPCPs) in the environment raises concern for aquatic systems. Carbamazepine (CBZ), an antiepileptic drug, is among the most detected PPCP globally, with concentrations in surface water exceeding those that induce toxicity to aquatic organisms. Non-targeted transcriptomic profiling was conducted in zebrafish ( Danio rerio ) larvae exposed to 0, 1, 5, 10, or 50 μg/L CBZ from 2 h post fertilization (hpf) through hatching, and then sampled at 48, 72, or 144 hpf. Transcriptomic profiles were annotated and characterized with in silico bioinformatic software to assess top enriched pathways and identify targets of environmentally relevant concentrations of CBZ and anchor molecular effects to higher levels of biological organization. Based on this analysis, CBZ was predicted to impair visual perception and sensory system development. The number of eye saccades, determined with a visually mediated behavioral assay, optokinetic response, was significantly reduced in 144 hpf larvae exposed to concentrations as low as 1 μg/L CBZ. These results indicate that environmentally relevant concentrations of CBZ may target and impact processes involved in visual function in fish.

Environmental Research↗

USGS2024

Body size and early marine conditions drive changes in Chinook salmon productivity across northern latitude ecosystems

Disentangling the influences of climate change from other stressors affecting the population dynamics of aquatic species is particularly pressing for northern latitude ecosystems, where climate-driven warming is occurring faster than the global average. Chinook salmon ( Oncorhynchus tshawytscha ) in the Yukon-Kuskokwim (YK) region occupy the northern extent of their species' range and are experiencing prolonged declines in abundance resulting in fisheries closures and impacts to the well-being of Indigenous people and local communities. These declines have been associated with physical (e.g., temperature, streamflow) and biological (e.g., body size, competition) conditions, but uncertainty remains about the relative influence of these drivers on productivity across populations and how salmon–environment relationships vary across watersheds. To fill these knowledge gaps, we estimated the effects of marine and freshwater environmental indicators, body size, and indices of competition, on the productivity (adult returns-per-spawner) of 26 Chinook salmon populations in the YK region using a Bayesian hierarchical stock-recruitment model. Across most populations, productivity declined with smaller spawner body size and sea surface temperatures that were colder in the winter and warmer in the summer during the first year at sea. Decreased productivity was also associated with above average fall maximum daily streamflow, increased sea ice cover prior to juvenile outmigration, and abundance of marine competitors, but the strength of these effects varied among populations. Maximum daily stream temperature during spawning migration had a nonlinear relationship with productivity, with reduced productivity in years when temperatures exceeded thresholds in main stem rivers. These results demonstrate for the first time that well-documented declines in body size of YK Chinook salmon were associated with declining population productivity, while taking climate into account.

Global Change Biology↗

USGS2018

Measuring and evaluating ecological flows from streams to regions: Steps towards national coverage

Living aquatic communities are largely determined and maintained by the volume and quality of flowing waters, both within lotic systems and in receiving waters of coastal systems. However, flow is one of the most frequently and extensively altered features of rivers and streams; alteration effects are likely to be exacerbated by climate change. Lotic systems vary and different fish species need different environmental conditions, and distinct problems are evident at various spatial scales. New synoptic flow and biological information now make it possible to evaluate the effects of altered flows throughout the Great Lakes Region at scales from the stream reach to the Region. We used estimates of river and streamflow and observed fish abundances to develop tools that specify the response of fish to alterations in those flows. We fit the logistic model to a cumulative fish abundance curve as a function of yield providing an empirical means to develop models of the response of cumulative fish abundance to flows. Response zones of yield for each species in each system type (based on size and thermal class) illustrate how criteria may be developed that can be used in decision‐making for management of flows. In our example application, we evaluate both the general response of brook trout ( Salvelinus fontinalis ) abundances (and fish diversity) to changes in flows and assess the sensitivity of each stream fish community to flow alteration. Mapping stream sensitivity to flow alteration throughout the US Great Lakes Region with a multiscale spatial framework showed how regional variability in sensitivity for any fish species or assemblage may be evaluated and provides managers with information to help determine where the best opportunities for protection or restoration of streamflows and associated communities exist. These results provide valuable tools and critical information to managers responsible for balancing water uses and maintaining high quality lotic ecosystems. These methods may be applied to any geographic region and can be extended nationally or globally, where flow, temperature, fish and landscape data are available.

Illinois, Indiana, Michigan, Minnesota, New York, ↗

USGS2009

Using propensity scores to estimate the effects of insecticides on stream invertebrates from observational data

Analyses of observational data can provide insights into relationships between environmental conditions and biological responses across a broader range of natural conditions than experimental studies, potentially complementing insights gained from experiments. However, observational data must be analyzed carefully to minimize the likelihood that confounding variables bias observed relationships. Propensity scores provide a robust approach for controlling for the effects of measured confounding variables when analyzing observational data. Here, we use propensity scores to estimate changes in mean invertebrate taxon richness in streams that have experienced insecticide concentrations that exceed aquatic life use benchmark concentrations. A simple comparison of richness in sites exposed to elevated insecticides with those that were not exposed suggests that exposed sites had on average 6.8 fewer taxa compared to unexposed sites. The presence of potential confounding variables makes it difficult to assert a causal relationship from this simple comparison. After controlling for confounding factors using propensity scores, the difference in richness between exposed and unexposed sites was reduced to 4.1 taxa, a difference that was still statistically significant. Because the propensity score analysis controlled for the effects of a wide variety of possible confounding variables, we infer that the change in richness observed in the propensity score analysis was likely caused by insecticide exposure.

Environmental Toxicology and Chemistry↗

USGS1987

Snowpack ion accumulation and loss in a basin draining to Lake Superior

The objective of this study was to relate winter precipitation ionic inputs, snowpack retention, and change in first-order stream chemistry with spring snowpack melt. During winter 1982–83, measurement of precipitation inputs, snowpack concentration and loading, and streamwater concentration and discharge of Ca2+, K+, H+, NO3−, and SO42− from a 176-ha watershed reveals that only H+ might be lost from the snowpack before first thaw. Above-freezing soil temperature beneath the snowpack may be a factor in H+ loss. An initial 1-d thaw resulted in loss of over one third (6 eq∙ha−1) of the snowpack Ca2+. Over one half the snowpack load of K+, H+, NO3−, and SO42−, was lost in a subsequent midwinter freeze–thaw period. Snowpack loading of ionic species was reduced by 70–90% before peak spring melting and stream discharge. Ecosystem H+ retention and biological uptake of NO3− further mitigate ionic "pulses" in streamwater. Sulfate discharge exceeds bulk inputs, which suggests significant dry deposition input and little forest soil retention of this anion. The snowpack was relatively small, which limits wider application of these results to the region.

Lake Superior↗

USGS1990

Influence of exchange flow between the channel and hyporheic zone on nitrate production in a small mountain stream

Variation in local exchange of flows between the channel and hyporheic zone produced temporally shifting concentration gradients of dissolved oxygen, nitrate, and ammonium in subsurface waters of a small, gravel-cobble bed stream. Channel water advected laterally supplied dissolved oxygen, and groundwater supplied ammonium to support hyporheic nitrification. Nitrate production was highest in sediment slurries from aerobic hyporheic sites, was absent at nearly anoxic sites, and was stopped by nitrification inhibitors (chlorate and nitrapyrin). Ammonium amendment to sediment slurries only slightly enhanced nitrate production indicating that sorption competed with biota for available substrate. Nitrate concentration increased from 75–130 μg N/L during 9 d of ammonium amendment to a hyporheic subsurface flow. Ammonium concentration rose slowly relative to a sulfate tracer initially, and declined slowly after cutoff as ammonium desorbed. Nitrate levels remained elevated for 6 d after cutoff as desorbed ammonium became biotically available. Interactions between the channel's hydrology, lithology, and biology such as we observed in nitrate production are probably more common than reported. However, the magnitude of the resulting nutrient flux will depend on factors which determine the depth and lateral extension of suitable hyporheic habitat.

California↗

USGS2020

Restoration of rapids habitat in a Great Lakes connecting channel, the St. Marys River, Michigan

Aquatic habitat has been extensively altered throughout the Laurentian Great Lakes to increase navigation connectivity. In particular, the St. Marys River, a Great Lakes connecting channel, lost >50% of its historic rapids habitat over the past century. In 2016, the natural flow was restored to the Little Rapids area of the St. Marys River. The goal of our study was to evaluate physical and ecological responses to the restoration of the Little Rapids area. Extensive habitat and biological data were collected prior to restoration (2013 and 2014), and after restoration (2017 and 2018). Measured parameters included total suspended solids, current velocity, benthic macroinvertebrates, and larval, juvenile, and adult fishes. Total suspended solids stayed low (<4 mg/L) following restoration, with the exception of a single construction‐related event. Pre‐restoration data indicated that all measured velocities were below the target flow rate of 0.24 m/s, whereas 70% of the measured habitat was above the target flow post‐restoration. Abundance and richness of benthic macroinvertebrates were reduced following restoration (>90% reduction). We observed a 45% increase in richness of larval fish 2 years after restoration and a 131% increase in catch per unit effort. For adult fishes, the proportion of individuals with a preference for fast‐moving waters increased from 1.5 to 45% in the restored area, and from 7 to 15% upstream of the restored area; a similar response was observed for lithophilic spawners. The physical and biological conditions of the Little Rapids improved and resembled conditions typical of rapids habitat extent in other areas of the river and other systems.

Michigan↗

USGS2016

Using large-scale flow experiments to rehabilitate Colorado River ecosystem function in Grand Canyon: Basis for an adaptive climate-resilient strategy

Adaptive management of Glen Canyon Dam is improving downstream resources of the Colorado River in Glen Canyon National Recreation Area and Grand Canyon National Park. The Glen Canyon Dam Adaptive Management Program (AMP), a federal advisory committee of 25 members with diverse special interests tasked to advise the U.S. Department of the Interior), was established in 1997 in response to the 1992 Grand Canyon Protection Act. Adaptive management assumes that ecosystem responses to management policies are inherently complex and unpredictable, but that understanding and management can be improved through monitoring. Best known for its high-flow experiments intended to benefit physical and biological resources by simulating one aspect of pre-dam conditions—floods, the AMP promotes collaboration among tribal, recreation, hydropower, environmental, water and other natural resource management interests. Monitoring has shown that high flow experiments move limited new tributary sand inputs below the dam from the bottom of the Colorado River to shorelines; rebuilding eroded sandbars that support camping areas and other natural and cultural resources. Spring-timed high flows have also been shown to stimulate aquatic productivity by disturbing the river bed below the dam in Glen Canyon. Understanding about how nonnative tailwater rainbow trout ( Oncorhynchus mykiss ), and downstream endangered humpback chub ( Gila cypha ) respond to dam operations has also increased, but this learning has mostly posed “surprise” adaptation opportunities to managers. Since reoperation of the dam to Modified Low Fluctuating Flows in 1996, rainbow trout now benefit from more stable daily flows and high spring releases, but possibly at a risk to humpback chub and other native fishes downstream. In contrast, humpback chub have so far proven robust to all flows, and native fish have increased under the combination of warmer river temperatures associated with reduced storage in Lake Powell, and a system-wide reduction in trout from 2000-06, possibly due to several years of natural reproduction under limited food supply. Uncertainties about dam operations and ecosystem responses remain, including how native and nonnative fish will interact and respond to possible increased river temperatures under drier basin conditions. Ongoing assessment of operating policies by the AMP’s diverse stakeholders represents a major commitment to the river’s valued resources, while surprise learning opportunities can also help identify a resilient climate-change strategy for co-managing nonnative and endangered native fish, sandbar habitats and other river resources in a region with already complex and ever-increasing water demands.

Arizona↗