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USGS2023

Pacific coastal and marine science of the U.S. Geological Survey in Santa Cruz, California

Introduction The Pacific Coastal and Marine Science Center is one of three U.S. Geological Survey science centers that serve the mission of the Coastal and Marine Hazards and Resources Program, the primary Federal marine geology and physical science research program focused on the Nation’s coastal and marine landscape. Our portfolio of coastal and marine projects in the Pacific Ocean provides the scientific information necessary to sustainably manage coastal and marine resources, to prepare for natural hazard events such as landslides and tsunamis, and to build resilience in coastal communities vulnerable to the effects of climate change, as well as storms, flooding, and risks to groundwater resources. The Nation’s demand for societally relevant coastal and marine science has never been greater, and we invite you to explore some of our ongoing Pacific Coastal and Marine Science Center activities in these pages.

General Information Product↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS2010

Flood risks and the willingness to purchase flood insurance

Computer simulation experiments were conducted to determine the effects of alternative sources of uncertainty on the willingness to pay for flood insurance. Two alternative insurance protection schemes were investigated: coinsurance and fixed coverage. The question investigated here is to what extent does the insurance scheme influence how purchasers respond to flood risks? Floods were assumed to be log normally distributed and the effects on the purchase of insurance of uncertainties in the parameters of the distribution were explored using response surface analysis. Results indicate that fixed coverage insurance provisions shift most of the uncertainty in the physical parameters governing natural disaster occurrences away from the insuree and onto the insurer. The results also show that the form of the damage function has little effect on the demand for flood insurance.

Water Resources Research↗

USGS2022

Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach

1. Large-scale, long-term biodiversity monitoring is essential to conservation, land management, and identifying threats to biodiversity. However, multispecies surveys are prone to various types of observation error, including false positive/negative detection, and misclassification, where a species is thought to have been encountered but not correctly identified. Previous methods assume an imperfect classifier produces species-level classifications, but in practice, particularly with human observers, we may end up with extraspecific classifications including `unknown', morphospecies designations, and taxonomic identifications coarser than species. Disregarding these types of species misclassification in biodiversity monitoring datasets can bias estimates of ecologically important quantities such as demographic ratess, occurrence, and species richness. 2. Here we present a joint classification-occupancy model that accounts for species non-detection and misclassification. Our framework accommodates extinction and colonization dynamics, allows for additional uncertain `morphospecies' designations, and makes use of individual specimens with known species identities in a semi-supervised setting. We compare the performance of our model to a classification-only model that discards information about occupancy and encounter rate. We illustrate our model with an empirical case study of the carabid beetle (Carabidae) community at the National Ecological Observatory Network Niwot Ridge Mountain Research Station, near Boulder, CO, USA. We also use simulations to evaluate model performance through validation metrics where varying fractions of the data are confirmed. 3. The model supported imperfect classifier accuracy and favored certain true species classifications strongly for some morphospecies. The model outperformed (e.g., precision) the reduced model that discarded occupancy information, and these differences were most pronounced for abundant species. 4. Spatial and temporal dynamics from modeled occupancy and encounter rates may inform species misclassification probability, but this idea has not yet been tested. Our statistical framework explores this opportunity, and can be applied to datasets with imperfect species detection and classification, limited verification data, and non-species classifications.

Methods in Ecology and Evolution↗

USGS2002

History and ecology of mangroves in the Dry Tortugas

Dry Tortugas National Park, which includes Bush, Long, Loggerhead, Garden, and Bird Keys, is a cluster of islands and coral reefs approximately 112.9 km (70 miles) west of Key West, Florida ( fig. 1 ). These islands were explored in 1513 by Ponce de León, who named them for the abundance of sea turtles, “tortugas,” and the lack of fresh water in the area. Historically, the Tortugas shoals have been valued as a military outpost, and the area is now additionally recognized as nesting grounds for diverse seabirds. The Dry Tortugas were declared a national treasure and bird sanctuary as early as 1908 and were incorporated into the National Park Service in 1935. These islands have been the setting for the U.S. Geological Survey’s National Wetlands Research Center (NWRC) research into mangroves and their relationship to bird life.

Florida↗

USGS2022

Maintaining wetland ecosystem services in a changing climate

A changing climate is causing challenges for soil and water management in many parts of the world. Current soil management practices need to be redesigned to effectively address present and future fluctuating climates. Soil Hydrology in a Changing Climate explores how soil management practices impact soil hydrological characteristics, and how we can improve our understanding of soil and water management under changing conditions. Soil hydrology includes water infiltration and soil water storage, which are critical for agricultural plant and animal production. With our future climate predicted to include hotter, drier conditions, increases in evapotranspiration as well as fewer, more intense storms, improved soil management and soil hydrology are critical to ensuring our agriculture production can meet human demand. This comprehensive book is a valuable resource for land managers, soil conservationists, researchers and others who wish to understand how different management practices affect soil and water dynamics and how these practices can be adjusted to enhance agricultural sustainability and environmental quality.

Book chapter↗

USGS2020

A GT-seq panel for walleye (Sander vitreus) provides important insights for efficient development and implementation of amplicon panels in non-model organisms

Targeted amplicon sequencing methods, such as genotyping-in-thousands by sequencing (GT-seq), facilitate rapid, accurate, and cost-effective analysis of hundreds of genetic loci in thousands of individuals. Development of GT-seq panels is nontrivial, but studies describing trade-offs associated with different steps of GT-seq panel development are rare. Here, we construct a dual-purpose GT-seq panel for walleye ( Sander vitreus ), discuss trade-offs associated with different development and genotyping approaches, and provide suggestions for researchers constructing their own GT-seq panels. Our GT-seq panel was developed using an ascertainment set consisting of restriction site-associated DNA data from 954 individuals sampled from 23 populations in Minnesota and Wisconsin, USA. We conducted simulations to test the utility of all loci for parentage analysis and genetic stock identification and designed 600 primer pairs to maximize joint accuracy for these analyses. We then performed three rounds of primer optimization to remove loci that overamplified and our final panel consisted of 436 loci. We also explored different approaches for DNA extraction, multiplexed polymerase chain reaction (PCR) amplification, and cleanup steps during the GT-seq process and discovered the following: (i) inexpensive Chelex extractions performed well for genotyping; (ii) the exonuclease I and shrimp alkaline phosphatase (ExoSAP) procedure included in some current protocols did not improve results substantially and was probably unnecessary; and (iii) it was possible to PCR amplify panels separately and combine them prior to adapter ligation. Well-optimized GT-seq panels are valuable resources for conservation genetics and our findings and suggestions should aid in their construction in myriad taxa.

Minnesota, Wisconsin↗

USGS2021

Integrating ecological impacts: Perspectives on drought in the Upper Missouri Headwaters, Montana, United States

Drought is a complex challenge experienced in specific locations through diverse impacts, including ecological impacts. Different professionals involved in drought preparedness and response approach the problem from different points of view, which means they may or may not recognize ecological impacts. This study examines the extent to which interviewees perceive ecological drought in the Upper Missouri Headwaters basin in southwestern Montana. Through semistructured interviews, this research investigates individuals’ perceptions of drought by analyzing how they define drought, how they describe their roles related to drought, and the extent to which they emphasize ecological impacts of drought. Results suggest that while most interviewees have an integrated understanding of drought, they tend to emphasize either ecological or nonecological impacts of drought. This focus was termed their drought orientation. Next, the analysis considers how participants understand exposure to drought. Results indicate that participants view drought as a complex problem driven by both human and natural factors. Last, the paper explores understandings of the available solution space by examining interviewees’ views on adaptive capacity, particularly factors that facilitate or hinder the ability of the Upper Missouri Headwaters region to cope with drought. Participants emphasized that adaptive capacity is both helped and hindered by institutional, cultural, and economic factors, as well as by available information and past resource management practices. Understanding how interviewees perceive the challenges of drought can shape drought preparedness and response, allowing those designing programs to better align their efforts to the perceptions of their target audience.

Montana↗

USGS2012

Plague

Plague offers readers an overview of this highly complex disease caused by the bacteria Yersinia pestis . The history of the disease, as well as information about Yersinia pestis and its transmission by fleas, is described. The section Geographic Distribution presents areas of the world and United States where plague occurs most commonly in rodents and humans. Species Susceptibility describes infection and disease rates in rodents, humans, and other animals. Disease Ecology considers the complex relationship among rodents, domestic and wild animals, and humans and explores possible routes of transmission and maintenance of the organism in the environment. The effects of climate change, the potential for Y. pestis to be used as a bioweapon, and the impact of plague on conservation of wildlife are considered in Points to Ponder . Disease Prevention and Control outlines methods of prevention and treatment including vaccination for prairie dogs and black-footed ferrets. A glossary of technical terms is included. Tonie E. Rocke, the senior author and an epizootiologist at the USGS National Wildlife Health Center (NWHC), is a prominent researcher on oral vaccination of prairie dogs to prevent plague. She is currently working to transfer her success in the laboratory to the field to control plague in prairie dogs. Rachel C. Abbott, a biologist at the NWHC, is assisting Dr. Rocke in this process and will coordinate field trials of the vaccine. Milt Friend, first director of the NWHC, wrote the foreword. Plague is intended for scholars and the general public. The material is presented in a simple, straightforward manner that serves both audiences. Numerous illustrations and tables provide easily understood summaries of key points and information.

Circular↗

USGS2020

Simultaneous observations of geoelectric and geomagnetic ﬁelds produced by magnetospheric ULF waves

Geomagnetic perturbations ( B G E O ) related to magnetospheric ultralow frequency (ULF) waves induce electric fields within the conductive Earth—geoelectric fields ( E G E O )—that in turn drive geomagnetically induced currents. Though numerous past studies have examined ULF wave B G E O from a space weather perspective, few studies have linked ULF waves with E G E O . Using recently available magnetotelluric impedance and E G E O measurements in the contiguous United States, we explore the relationship between ULF waves and E G E O . We use satellite, ground‐based radar, B G E O , and E G E O measurements in a case study of a plasmaspheric virtual resonance (PVR), demonstrating that the PVR E G E O has significant spatial variation in contrast to a relatively uniform B G E O , consistent with spatially varying Earth conductivity. We further show ULF wave E G E O measurements during two moderate storms of ∼ 1 V/km. We use both results to highlight the need for more research characterizing ULF wave E G E O .

Geophysical Research Letters↗

USGS2025

The communication of volcano information in New Zealand - A narrative review

Communication of volcano information is critical for effective volcanic risk management. A variety of information is communicated to inform decisions and guide actions for planning, preparedness, and response. Such information needs to be reliable, and fit-for-purpose across different stages of volcanic activity (quiescence, unrest, short or long-term eruptive stages, and the post-eruptive stage). However, an understanding of communication across these different stages of volcanic activity remains limited. We undertook a narrative review of New Zealand literature to explore what information is communicated about volcanoes, across which stages of activity and by whom. Results highlight that NZ literature only documents certain aspects of volcano information and communication, specifically regarding certain locations, stages of volcanic activity (i.e. quiescence or unrest), or hazards. Literature gaps exist regarding volcano communication during unrest and post-eruptive stages, as well as how volcano information evolves between these phases, and how decision-makers use such information. Additional work would be useful to document existing examples of volcano information for different stages of activity. Further research could help in understanding the information needs of decision-makers during each of these stages to improve information and communication.

New Zealand Journal of Geology and Geophysics↗

USGS2023

Sound and sturgeon: Bioacoustics and anthropogenic sound

Sturgeons are basal bony fishes, most species of which are considered threatened and/or endangered. Like all fishes, sturgeons use hearing to learn about their environment and perhaps communicate with conspecifics, as in mating. Thus, anything that impacts the ability of sturgeon to hear biologically important sounds could impact fitness and survival of individuals and populations. There is growing concern that the sounds produced by human activities (anthropogenic sound), such as from shipping, commercial barge navigation on rivers, offshore windfarms, and oil and gas exploration, could impact hearing by aquatic organisms. Thus, it is critical to understand how sturgeon hear, what they hear, and how they use sound. Such data are needed to set regulatory criteria for anthropogenic sound to protect these animals. However, very little is known about sturgeon behavioral responses to sound and their use of sound. To help understand the issues related to sturgeon and anthropogenic sound, this review first examines what is known about sturgeon bioacoustics. It then considers the potential effects of anthropogenic sound on sturgeon and, finally identifies areas of research that could substantially improve knowledge of sturgeon bioacoustics and effects of anthropogenic sound. Filling these gaps will help regulators establish appropriate protection for sturgeon.

The Journal of the Acoustical Society of America↗

USGS2021

Preface to the Focus Section on the 2020 Intermountain West earthquakes

The Intermountain West region of the United States extends from the eastern margin of the Sierra Nevada and Cascade Mountains in the west to the Rocky Mountains in the east. The region is characterized by dextral shear along the eastern margin of the Sierra Nevada and nearly east-west extension in the Basin and Range. This region experienced four significant earthquake sequences in the first half of 2020. The most significant mainshocks were the 18 March 2020 Mw 5.7 earthquake north of Magna, Utah (a suburb of Salt Lake City), the 31 March 2020 Mw 6.5 earthquake northwest of Stanley, Idaho, the 15 May 2020 Mw 6.5 earthquake in the Monte Cristo Range, northwest of Tonopah, Nevada, and the 24 June 2020 Mw 5.8 earthquake near Lone Pine, California. The 15 articles appearing in this focus section explore timely and important topics associated with these sequences, including kinematic rupture models, near-field ground motions, aftershock statistics, geologic observations, seismic hazard implications, and seismotectonics. It is noteworthy that the efforts to record and characterize these earthquake sequences took place during travel and work restrictions necessitated by the COVID-19 pandemic.

Seismological Research Letters↗

USGS2005

Wagon loads of sand blows in White County, Illinois

Several anecdotal accounts provide compelling evidence that liquefaction occurred at several sites in Illinois during the 1811-1812 New Madrid sequence, as much as 250 km north of the New Madrid seismic zone (NMSZ). At one Wabash Valley location, sand blows are still evident near Big Prairie, Illinois, a location described in a particularly detailed and precise historic account. This account includes descriptions of substantial liquefaction (sand blows) as well as a two-mile-long east-west-trending “crack” along which two feet of south-side-down displacement occurred. An offset can no longer be seen at this location, which has been extensively farmed and plowed for decades. Field reconnaissance verifies many of the details provided in the account, however. We conducted a seismic-reflection experiment at this location and observed a modest offset in the Paleozoic strata at this location. The offset is opposite to that described in the historic account, consistent with the hypothesis that large midcontinent earthquakes occur on faults reactivated in a Holocene stress regime different from the one in which they were formed. Only two explanations can account for these observations: Either large NMSZ events triggered substantial liquefaction at distances greater than hitherto realized, or at least one large “New Madrid” event occurred significantly north of the NMSZ. We explore these possibilities and conclude that, while neither one can be ruled out, several disparate lines of evidence suggest that the 23 January 1812 “New Madrid mainshock” occurred in White County, Illinois, near the location of the m b 5.5 1968 southern Illinois earthquake and recent microearthquake activity.

Illinois↗

USGS2019

Discovery of an extensive deep-sea fossil serpulid reef associated with a cold seep, Santa Monica Basin, California

Multi-beam mapping of the Santa Monica Basin in the eastern Pacific has revealed the existence of a number of elevated bathymetric features, or mounds, harboring cold seep communities. During 2013-2014, mounds at ~600 m water depth were observed for the first time and sampled by Monterey Bay Aquarium Research Institute’s ROV Doc Ricketts. Active cold seeps were found, but surprisingly one of these mounds was characterized by massive deposits composed of fossil serpulid worm tubes (Annelida: Serpulidae) exhibiting various states of mineralization by authigenic carbonate. No living serpulids with equivalent tube morphologies were found at the site; hence the mound was termed ‘Fossil Hill’. In the present study, the identity of the fossil serpulids and associated fossil community, the ages of fossils and authigenic carbonates, the formation of the fossil serpulid aggregation, and the geological structure of the mound are explored. Results indicate that the tubes were most likely made by a deep-sea serpulid lineage, with radiocarbon dating suggesting that they have a very recent origin during the Late Pleistocene, specifically to the Last Glacial Maximum ~20,000 years ago. Additional U-Th analyses of authigenic carbonates mostly corroborate the radiocarbon dates, and also indicate that seepage was occurring while the tubes were being formed. We also document similar, older deposits along the approximate trajectory of the San Pedro Basin Fault. We suggest that the serpulid tube facies formed in situ, and that the vast aggregation of these tubes at Fossil Hill is likely due to a combination of optimal physical environmental conditions and chemosynthetic production, which may have been particularly intense as a result of sea-level lowstand during the Last Glacial Maximum.

California↗

USGS2019

Discriminating among Pacific salmon, Rainbow Trout, and Atlantic Salmon species using common genetic screening methods

The five most common species of Pacific salmon, Rainbow Trout (steelhead) Oncorhynchus spp., and Atlantic Salmon Salmo salar intermingle in the North Pacific Ocean and its freshwater tributaries. Efficient morphological methods for distinguishing among these species are sometimes limited by condition of the specimen (degraded or missing morphology), life history stage, or training of the observer. Researchers have successfully applied various genetic methods to distinguish among these species when morphological analyses are not possible, but they cannot easily incorporate these methods into standard fish and wildlife population monitoring analysis workflows. Here we test five 5′–3′ exonuclease (TaqMan) assays developed from mitochondrial genes and provide novel methods that take advantage of TaqMan output to distinguish among these species. We found that combinations of as few as two of the five assays were adequate to distinguish all species. TaqMan chemistry is designed to interrogate a single nucleotide locus. We also explore the basis for the variation in the observed scatter plot distributions (variation in florescent signals) and show that this variation is due to nucleotide diversity in and near the probe site. Because the SNPs underlying the assays developed here are all physically close to one another along the mitochondrial genome, the potential exists to develop a single DNA sequence-based assay to discriminate among salmon species. This single assay can be added to a genotyping-by-sequencing panel to identify and exclude nontarget species from analyses.

Journal of Fish and Wildlife Management↗

USGS2024

Joint pilot fish habitat framework

This story map will take you through the process of exploring and testing methods necessary for a higher resolution, seamless fish habitat assessment across both inland and estuarine waters through the lens of our joint pilot assessment Fish habitat assessments attempt to relate past, current, or future landscape conditions to the state of fish species occurrence, distribution, abundance, or community and habitat condition in streams, rivers, or estuaries. Previous fish habitat assessments, such as the National Fish Habitat Assessment, conducted separate and disconnected assessments for inland waters and estuaries. In this project, National Oceanic and Atmospheric Administration ( NOAA ) and U.S. Geological Survey ( USGS ) researchers created a seamless spatial framework to allow assessments that integrate influences on fish habitat from headwaters to the estuary. This effort began when the Chesapeake Bay Program Fish Habitat Action Team expressed interest in a Baywide fish habitat assessment spanning tidal salt, tidal fresh, warm non-tidal, and cold non-tidal waters. However, the complexity of the myriad of implementation details to consider when developing such an assessment necessitated the need for a tributary-specific pilot assessment. To conduct this pilot assessment, a NOAA/USGS joint partnership was formed with cooperation and support from the Chesapeake Bay Agreement and Chesapeake Bay Fish Habitat Action Team (FHAT).

Maryland↗

USGS2025

The role of bedrock circulation depth and porosity in mountain streamflow response to prolonged drought

Quantitative understanding is lacking on how the depth of active groundwater circulation in bedrock affects mountain streamflow response to a multi‐year drought. We use an integrated hydrological model to explore the sensitivity of a variety of streamflow metrics to bedrock circulation depth and porosity under a plausible extreme drought scenario lasting up to 5 years. Endmember depth versus hydraulic conductivity relationships and porosity values for fractured crystalline rock are simulated. With drought, a deeper circulation system with higher drainable porosity more effectively buffers minimum flow and significantly limits perennial stream loss in comparison to a shallow circulation system. Streamflow buffering is accomplished through extensive groundwater storage loss. However, deeper circulation systems experience prolonged recovery from drought in comparison to storage‐limited shallow systems. Research highlights the importance of characterizing the deeper bedrock hydrogeology in mountainous watersheds to better understand and predict drought impacts on stream ecosystem health and water resource sustainability.

Colorado↗