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At least 667 records · Page 37Linked to original sources
USGS2025

Leveraging artificial intelligence and machine learning to advance Chesapeake Bay research and management: A review of status, challenges, and opportunities

The Chesapeake Bay and its watershed (hereafter “Chesapeake Bay region”) have been the focus of extensive restoration efforts for several decades. These restoration efforts are guided by the Chesapeake Bay Watershed Agreement (Chesapeake Executive Council 2014) which outlines 10 goals and 31 measurable outcomes. The Chesapeake Bay is globally recognized as a model for coastal restoration due to long-term investments in monitoring, modeling, implementation and research by the Chesapeake Bay Program (CBP) partnership. These monitoring network spans tidal and non-tidal regions and provides data across multiple scales. Artificial intelligence (AI), particularly machine-learning (ML) and deep learning (DL), has emerged as a powerful tool for analyzing large, complex datasets. These techniques have gained widespread adoption across various disciplines, including ecology, hydrology, and environmental science. In the Bay context, AI/ML is increasingly being used to explore drivers of environmental change, analyze system dynamics, and predict conditions in areas with limited monitoring. The CBP partnership, particularly its Scientific and Technical Advisory Committee (STAC), has increasingly recognized the growing role of AI/ML in watershed and estuarine management. Recent Chesapeake Community Research Symposium sessions and initiatives such as the Chesapeake Global Collaboratory highlight increasing regional momentum to apply big data and AI/ML for environmental solutions. Together, these developments underscore the timely need to explore how AI/ML can help advance Chesapeake Bay restoration and management. This STAC workshop, titled “Leveraging Artificial Intelligence and Machine learning to Advance Chesapeake Bay Research and Management: A review of status, challenges, and opportunities,” was held from February 24-25, 2025, in Edgewater, Maryland to bring together over 50 federal, state, and academic scientists and partners to synthesize the current state of AI/ML applications and identify research gaps in Chesapeake Bay research and management. The workshop focused on three main objectives: 1. Summarize recent AI/ML applications and lessons learned in both tidal and nontidal areas of the Chesapeake Bay region. 2. Identify challenges and gaps in applying AI/ML approaches to Chesapeake Bay data. Such challenges and gaps may include data limitations, harmonization issues, ineffective communication of AI/ML insights, and a lack of coordination among research and management institutions. 3. Develop recommendations and identify opportunities for leveraging AI/ML to address issues across the Chesapeake Bay region. Key areas of focus may include generating new information to support watershed management, delivering AI/MLgenerated insights to managers in a clear and actionable way, and fostering greater collaboration among stakeholders within the CBP Partnership. Workshop participants engaged in science presentations and breakout sessions to develop recommendations for advancing the integration of AI/ML techniques into research and management across the Chesapeake Bay region. By synthesizing current applications, identifying challenges, and exploring new opportunities, the workshop has provided valuable insights and recommendations for better leveraging AI/ML approaches to support the success of Bay restoration efforts. Together, these recommendations provide a roadmap for enhancing data-driven, science-based decision making aligned with the goals and outcomes of the Chesapeake Bay Watershed Agreement.

Delaware, Maryland, Virginia↗
USGS2022

Ecological and socioeconomic factors associated with the human burden of environmentally mediated pathogens: A global analysis

Background Billions of people living in poverty are at risk of environmentally mediated infectious diseases—that is, pathogens with environmental reservoirs that affect disease persistence and control and where environmental control of pathogens can reduce human risk. The complex ecology of these diseases creates a global health problem not easily solved with medical treatment alone. Methods We quantified the current global disease burden caused by environmentally mediated infectious diseases and used a structural equation model to explore environmental and socioeconomic factors associated with the human burden of environmentally mediated pathogens across all countries. Findings We found that around 80% (455 of 560) of WHO-tracked pathogen species known to infect humans are environmentally mediated, causing about 40% (129 488 of 359 341 disability-adjusted life years) of contemporary infectious disease burden (global loss of 130 million years of healthy life annually). The majority of this environmentally mediated disease burden occurs in tropical countries, and the poorest countries carry the highest burdens across all latitudes. We found weak associations between disease burden and biodiversity or agricultural land use at the global scale. In contrast, the proportion of people with rural poor livelihoods in a country was a strong proximate indicator of environmentally mediated infectious disease burden. Political stability and wealth were associated with improved sanitation, better health care, and lower proportions of rural poverty, indirectly resulting in lower burdens of environmentally mediated infections. Rarely, environmentally mediated pathogens can evolve into global pandemics (eg, HIV, COVID-19) affecting even the wealthiest communities. Interpretation The high and uneven burden of environmentally mediated infections highlights the need for innovative social and ecological interventions to complement biomedical advances in the pursuit of global health and sustainability goals. Funding Bill & Melinda Gates Foundation, National Institutes of Health, National Science Foundation, Alfred P. Sloan Foundation, National Institute for Mathematical and Biological Synthesis, Stanford University, and the US Defense Advanced Research Projects Agency.

The Lancet Planetary Health↗
USGS2001

Baseline channel morphology and bank erosion inventory of South Fork Campbell Creek at Campbell Tract, Anchorage, Alaska, 1999 and 2000

South Fork Campbell Creek drains largely undeveloped land in Anchorage, Alaska, but supports heavy use near the Bureau of Land Management (BLM) Campbell Tract facility for recreation and environmental education. To help assess the impacts of human activities in the basin on biological communities, particularly aquatic and terrestrial biota, morphological changes to the channel bed and banks were monitored for 2 years. Erosion conditions and rates of change were measured and 11 transects were surveyed in three reaches of Campbell Creek near the BLM Campbell Creek Science Center in 1999. Repeat measurements at these 33 transects in 2000 documented noticeable differences between horizontal or vertical channel position at eight transects. Repeat measurements of 51 erosion pins at the survey transects provided details of bank erosion between the 2 years. Annual erosion rates at the erosion pins ranged from 0.81 foot per year of erosion to 0.16 foot per year of deposition.

Open-File Report↗
USGS2025

Proceedings of the 2024 Asia-Pacific Wildlife Health Workshop—Collaborating against shared threats

Emerging diseases of wildlife origin are increasingly transboundary (they spread rapidly across geographic regions and across continents). In recent years, examples include the rapid spread of African swine fever across Europe and Asia with negative effects on food security, and the near global spread of highly pathogenic avian influenza which has devastated wildlife populations, caused economic harm, and which threatens public health; consequently, international partnerships and networks are essential to facilitate the sharing of information for improved situational awareness and better preparedness and response. In this regard, the U.S. Geological Survey and the Korea National Institute for Wildlife Disease Control and Prevention have had a long-standing partnership to foster scientific collaboration. A key part of the activities has been annual scientific workshops, which commenced in 2016. The 2024 workshop in Hilo, Hawaii, was the most recent in these series of workshops and included participants from across Asia and the Pacific region, including Thailand, Vietnam, China, Republic of Korea, Japan, Australia, Cook Islands, Fiji, and the United States. The goals of the workshop were: to continue to build the wildlife health community of practice in the Asia-Pacific region and expand the participants to agencies and institutions from other countries in the region; and exchange scientific knowledge among the participants to share best practices, create scientific networks, and build capacity in wildlife health science for the Asia-Pacific region. The themes discussed at the workshop included wildlife health risk management, avian Influenza, African swine fever, climate change and emerging diseases, and international cooperation. This report contains the author-submitted abstracts which provide a summary of the presentations and discussions during the workshop. The aim is to share this information to continue to foster international scientific exchange to protect wildlife health, livestock, and public health from the negative impacts of infectious and noninfectious diseases.

Open-File Report↗
USGS2022

The Volcano Hazards Program — Strategic science plan for 2022–2026

The U.S. Geological Survey (USGS) Volcano Hazards Program (VHP) Strategic Science Plan, developed through discussion with scientists-in-charge of the USGS volcano observatories and the director of the USGS Volcano Science Center, specifies six major strategic goals to be pursued over the next 5 years. The purpose of these goals is to help fulfill the USGS VHP mission to enhance public safety and to minimize social and economic disruption caused by volcanic eruptions in the United States and its territories, through delivery of effective forecasts, warnings, and information on volcano hazards based on scientific understanding of volcanic processes. These six major strategic goals are to (1) continue—and when possible, accelerate—implementation of the National Volcano Early Warning System (NVEWS); (2) improve community preparedness for volcanic hazards by updating and standardizing essential components of volcano hazard assessments and providing training to land managers, emergency responders, and State and local communities; (3) develop the next generation of volcano hazard assessments using geographic information systems and other digital tools; (4) make observations with new instrumentation and take advantage of advances in real-time gas sensors; (5) rebuild the Hawaiian Volcano Observatory and its monitoring capabilities; and (6) form new partnerships and strengthen existing partnerships with other government agencies and with academia and industry, to advance volcano monitoring, increase understanding of volcanic processes, and disseminate USGS information. In its effort to advance volcano science and monitoring techniques, the VHP has identified six scientific targets to pursue over the next 5 years, including: (1) increased understanding of volcano seismicity; (2) improved probabilistic forecasting; (3) deepened grasp of volcano eruption histories and geochronology; (4) newly developed and refined physical models of magmatic systems, leading to better situational awareness and accuracy of eruption forecasts; (5) improved warnings and forecasts of volcanic ash and gas clouds and characterization of volcanic smog sources; and (6) refined lava-flow modeling and forecasting of lava-flow paths.

Circular↗
USGS1983

River discharge controls phytoplankton dynamics in the northern San Francisco Bay estuary

Phytoplankton dynamics in the upper reach of the northern San Francisco Bay estuary are usually characterized by low biomass dominated by microflagellates or freshwater diatoms in winter, and high biomass dominated by neritic diatoms in summer. During two successive years of very low river discharge (the drought of 1976-77), the summer diatom bloom was absent. This is consistent with the hypothesis that formation of the diatom population maximum is a consequence of the same physical mechanisms that create local maxima of suspended sediments in partially-mixed estuaries: density-selective retention of particles within an estuarine circulation cell. Because the estuary is turbid, calculated phytoplankton growth rates are small in the central deep channel but are relatively large in lateral shallow embayments where light limination is less severe. When river discharge falls within a critical range (100–350 m 3 s −1 ) that positions the suspended particulate maximum adjacent to the productive shallow bays, the population of neritic diatoms increases. However, during periods of high discharge (winter) or during periods of very low discharge (drought), the suspended particulate maximum is less well-defined and is uncoupled (positioned downstream or upstream) from the shallow bays of the upper estuary, and the population of neritic diatoms declines. Hence, the biomass and community composition of phytoplankton in this estuary are controlled by river discharge.

California↗
USGS2009

The effect of Hurricane Katrina on nekton communities in the tidal freshwater marshes of Breton Sound, Louisiana, USA

Hurricanes are climatically-induced resource pulses that affect community structure through the combination of physical and chemical habitat change. Estuaries are susceptible to hurricane pulses and are thought to be resilient to habitat change, because biotic communities often return quickly to pre-hurricane conditions. Although several examples provide evidence of quick recovery of estuarine nekton communities following a hurricane, few studies take place in tidal freshwater habitat where physical habitat effects can be extensive and may not be readily mitigated. We examined nekton communities (density, biomass, ?? and ?? diversity, % occurrence by residence status) in tidal freshwater marshes in Breton Sound, Louisiana, before and after a direct hit by Hurricane Katrina (2005). Vegetative marsh loss in the study area was extensive, and elevated salinity persisted for almost 6 months. Post-Katrina nekton density and biomass increased significantly, and the nekton community shifted from one of tidal freshwater/resident species to one containing brackish/migrant species, many of which are characterized by pelagic and benthic life history strategies. By spring 2007, the nekton community had shifted back to tidal freshwater/resident species, despite the enduring loss of vegetated marsh habitat. ?? 2009 Elsevier Ltd.

Estuarine, Coastal and Shelf Science↗
USGS2024

Multiple lines of evidence point to pesticides as stressors affecting invertebrate communities in small streams in five United States regions

Multistressor studies were performed in five regions of the United States to assess the role of pesticides as stressors affecting invertebrate communities in wadable streams. Pesticides and other chemical and physical stressors were measured in 75 to 99 streams per region for 4 weeks, after which invertebrate communities were surveyed (435 total sites). Pesticides were sampled weekly in filtered water, and once in bed sediment. The role of pesticides as a stressor to invertebrate communities was assessed by evaluating multiple lines of evidence: toxicity predictions based on measured pesticide concentrations, multivariate models and other statistical analyses, and previously published mesocosm experiments. Toxicity predictions using benchmarks and species sensitivity distributions and statistical correlations suggested that pesticides were present at high enough concentrations to adversely affect invertebrate communities at the regional scale. Two undirected techniques—boosted regression tree models and distance-based linear models—identified which pesticides were predictors of (respectively) invertebrate metrics and community composition. To put insecticides in context with known, influential covariates of invertebrate response, generalized additive models were used to identify which individual pesticide(s) were important predictors of invertebrate community condition in each region, after accounting for natural covariates. Four insecticides were identified as stressors to invertebrate communities at the regional scale: bifenthrin, chlordane, fipronil and its degradates, and imidacloprid. Fipronil was particularly important in the Southeast region, and imidacloprid, bifenthrin, and chlordane were important in multiple regions. For imidacloprid, bifenthrin, and fipronil, toxicity predictions were supported by mesocosm experiments that demonstrated adverse effects on naïve aquatic communities when dosed under controlled conditions. These multiple lines of evidence do not prove causality—which is challenging in the field under multistressor conditions—but they make a strong case for the role of insecticides as stressors adversely affecting invertebrate communities in streams within the five sampled regions.

Science of the Total Environment↗
USGS2025

Pacific island landbird monitoring report, Kalaupapa National Historical Park, 2021

In 2021, landbird surveys were conducted at Kalaupapa National Historical Park on the island of Molokaʻi to assess changes in species composition, distribution, and population densities since 2005. Point-transect distance sampling surveys were conducted on six transects at 50 landbird monitoring stations within an 1,834-hectare area. A total of nine landbird species were detected, with the ʻApapane ( Himatione sanguinea ) the only endemic Hawaiian species detected. Sufficient detections of six species allowed for population density and abundance estimates, which were compared to 2005 estimates using a two-sample z-test. The abundance of ʻApapane declined by 57% to 2,476 ± 729 (SE) birds in 2021 compared to 2005. Population densities of the House Finch ( Haemorhous mexicanus ), Japanese Bush Warbler ( Horornis diphone ), Warbling White-eye ( Zosterops japonicus ), and White-rumped Shama ( Copsychus malabaricus ) were also lower in 2021 than in 2005, but comparisons were inconclusive. Since 2005, the Red-billed Leiothrix ( Leiothrix lutea ) irrupted within the survey area to an estimated abundance of 11,088 ± 1,208 birds. The Warbling White-eye was the most abundant species, with an estimated 101,724 ± 11,692 birds. Surveyors failed to detect the Hawaiʻi ʻAmakihi ( Chlorodrepanis virens ), which has become increasingly rare on Molokaʻi. The federally threatened ʻIʻiwi ( Drepanis coccinea ) was last seen on Molokaʻi in 2010, further raising concerns about its potential extirpation. The Olomaʻo ( Myadestes lanaiensis ), an endemic thrush, has not been detected since 1980 and is likely extinct. These findings show the ongoing shift toward non-native bird communities and highlight the challenges of conserving native forest birds amidst widespread avian malaria transmission, introduced predators, and extensive habitat degradation.

Hawaii↗
USGS2021

Introduced mangroves along the coast of Moloka‘i, Hawai‘i may represent novel habitats for megafaunal communities

Mangrove forests are prevalent along tropical/subtropical coastlines and provide valuable ecosystem services including coastline stabilization, storm impact reduction, and enhanced coastal productivity. However, mangroves were absent from the Hawaiian Islands and their introduction to Moloka‘i in 1902 has provided an opportunity to examine their unique influence on coastal landscapes. Previous studies indicate an inability of native detritivores to utilize tannin-rich substrates, yielding poor cycling of mangrove-derived detritus in Hawaiian tidal zones. We hypothesize that in addition to altering detrital inputs, introduced mangroves facilitate the persistence of introduced species in the Hawaiian coastal zone by providing novel habitat for juvenile megafauna. To determine whether mangrove-dominated tidal zones harbor megafaunal assemblages distinct from open sandflats, we sampled in two mangrove (M1 and M2) and two adjacent sandflat (S1 and S2) sites along the southern coast of Moloka‘i, where the most mature mangrove forests occur in Hawai‘i. There were no statistical differences in total abundances between M1 and M2 or S1 and S2; therefore, results from individual deployments were pooled across the sites in order to conduct between-habitat (mangrove vs. sandflat) comparisons. Our mangrove study site had significantly higher abundances of megafauna, including several shrimp and crab species, compared to the sandflat site. The community composition within the mangrove site differed from the sandflat site, including higher abundances of non-native mangrove crabs ( Scylla serrata ), as well as native fish Bathygobius cocosensis and crustaceans ( Thalamita crenata , Palaemon pacificus , P. debilis ) than in the sandflat site, indicating that the mangrove site may provide niches for both invasive and native species. In addition, mean body length for several similar species was smaller in the mangrove site than in the sandflat site, suggesting that these mangroves may be providing a habitat for juvenile species. While our study was spatially limited to two mangrove and two adjacent sandflat sites, our results suggest that introduced mangroves in Moloka‘i may support small-bodied, native, and non-native megafauna, influencing coastal Hawaiian trophic dynamics. Our case study provides a baseline for megafaunal fish and invertebrate communities present prior to non-native mangrove removal as well as for monitoring potential community changes following expansion of mangrove habitats due to climate change.

Hawaii↗
USGS2018

Community for Data Integration 2017 annual report

The Community for Data Integration (CDI) is a group that helps members grow their expertise on all aspects of working with scientific data. The CDI’s activities advance data and information integration capabilities in the U.S. Geological Survey and in the wider Earth and biological sciences. This annual report describes the presentations, activities, collaboration areas, workshop, and other CDI-sponsored events in fiscal year 2017. The report also describes the objectives of the 11 CDI-funded projects in fiscal year 2017. The report shows how the CDI activities fulfill the strategic objective of the U.S. Geological Survey’s Core Science Systems Mission Area to develop a workplace model for interdisciplinary science.

Open-File Report↗
USGS2002

A National survey of methyl tert -butyl ether and other volatile organic compounds in drinking-water sources: Results of the random source-water survey

Methyl tert -butyl ether (MTBE) was detected in source water used by 8.7 percent of randomly selected community water systems (CWSs) in the United States at concentrations that ranged from 0.2 to 20 micrograms per liter ( μ g/L). The Random Survey conducted by the U.S. Geological Survey, in cooperation with the Metropolitan Water District of Southern California and the Oregon Health & Science University, was designed to provide an assessment of the frequency of detection, concentration, and distribution of MTBE, three other ether gasoline oxygenates, and 62 other volatile organic compounds (VOCs) in ground- and surface-water sources used for drinking-water supplies. The Random Survey was the first of two components of a national assessment of the quality of source water supplying CWSs sponsored by the American Water Works Association Research Foundation. A total of 954 CWSs were selected for VOC sampling from the population of nearly 47,000 active, self-supplied CWSs in all 50 States, Native American Lands, and Puerto Rico based on a statistical design that stratified on CWS size (population served), type of source water (ground and surface water), and geographic distribution (State). At a reporting level of 0.2 μ g/L, VOCs were detected in 27 percent of source-water samples collected from May 3, 1999 through October 23, 2000. Chloroform (in 13 percent of samples) was the most frequently detected of 42 VOCs present in the source-water samples, followed by MTBE. VOC concentrations were generally less than 10 μ g/L 95 percent of the 530 detections and 63 percent were less than 1.0 μ g/L. Concentrations of 1,1-dichloroethene, tetrachloroethene, trichloroethene, vinyl chloride, and total trihalomethanes (TTHMs), however, exceeded drinking-water regulations in eight samples. Detections of most VOCs were more frequent in surface-water sources than in ground-water sources, with gasoline compounds collectively and MTBE individually detected significantly more often in surface water. Use of personal and commercial motorized watercraft on surface-water bodies that are drinking-water sources is probably the reason for the elevated detections of gasoline contaminants relative to ground water. MTBE detections demonstrated a seasonal pattern with more frequent detections in surface water in summer months, which is consistent with seasonal watercraft use. The detection frequency of most VOCs was significantly related to urban land use and population density. Detections of any VOC, non-trihalo-methane compounds, gasoline compounds collectively, the specific gasoline compounds benzene, toluene, ethylbenzene, and xylenes (BTEX), MTBE, solvents, and refrigerants were significantly greater in areas with more than 60 percent urban land use and (or) population density greater than 1,000 people per square mile than in source waters from less urbanized or lower population-density areas. MTBE detections were five times more frequent in source waters from areas with high MTBE use than in source waters from low or no MTBE use, but, unlike other gasoline compounds, MTBE detections were not significantly related to the density of gasoline storage tanks near drinking-water sources.

Water-Resources Investigations Report↗
USGS2018

Projected 21st century coastal flooding in the Southern California Bight. Part 1: Development of the third generation CoSMoS model

Due to the effects of climate change over the course of the next century, the combination of rising sea levels, severe storms, and coastal change will threaten the sustainability of coastal communities, development, and ecosystems as we know them today. To clearly identify coastal vulnerabilities and develop appropriate adaptation strategies due to projected increased levels of coastal flooding and erosion, coastal managers need local-scale hazards projections using the best available climate and coastal science. In collaboration with leading scientists world-wide, the USGS designed the Coastal Storm Modeling System (CoSMoS) to assess the coastal impacts of climate change for the California coast, including the combination of sea-level rise, storms, and coastal change. In this project, we directly address the needs of coastal resource managers in Southern California by integrating a vast range of global climate change projections in a thorough and comprehensive numerical modeling framework. In Part 1 of a two-part submission on CoSMoS, methods and the latest improvements are discussed, and an example of hazard projections is presented.

Journal of Marine Science and Engineering↗
USGS2007

Yellowstone grizzly bear investigations: Annual report of the Interagency Grizzly Bear Study Team, 2006

The contents of this Annual Report summarize results of monitoring and research from the 2006 field season. The report also contains a summary of nuisance grizzly bear ( Ursus arctos horribilis ) management actions. The Interagency Grizzly Bear Study Team (IGBST) continues to work on issues associated with counts of unduplicated females with cubs-of- the-year (COY). These counts are used to establish a minimum population size, which is then used to establish mortality thresholds for the Recovery Plan (U.S. Fish and Wildlife Service [USFWS] 1993). After considerable delays due to programming issues, a computer program that defines the rule set used by Knight et al. (1995) to differentiate unique family groups was development and tested in 2005 and 2006. Simulations using observations of collared females with COY were randomly sampled to generate datasets of observations of random females with COY. These datasets were then run though the simulations program to test the accuracy of the rules. Data are currently being summarized. This project has been completed and a manuscript was submitted to the Journal of Wildlife Management. The grizzly bear recovery plan (USFWS 1993) established human-caused mortality quotas. We used the latest information on reproduction and survival to estimate population trajectory in the same simulation model originally used by Harris (1984). A Wildlife Monographs was published in 2006. Additionally, the study team, in cooperation with several quantitative experts, reassessed how population size is indexed and how sustainable mortality rates are established. A draft report was presented to the Yellowstone Ecosystem Subcommittee in spring 2005. It was published as part of the USFWS Delisting Rule (Federal Register Vol. 70, No. 221, Nov. 17, 2005, 69853–69884) and subjected to public comment. This workshop document can be found at http://www.fws.gov/mountain-prairie/species/mammals/grizzly/yellowstone.htm. During the summer of 2006, a second workshop was held to address public comment and professional peer review. The result of this workshop was a supplement to the 2005 workshop document. This supplement can be found at http://www.fws.gov/mountain-prairie/species/mammals/grizzly/yellowstone.htm under the link Revised Methods to Estimate Population Size and Sustainable Mortality Limits. Results of those estimates are provided in Appendix A. Our project addressing the potential application of stable isotopes and trace elements to quantify consumption rates of whitebark pine ( Pinus albicaulis ) and cutthroat trout ( Oncorhynchus clarki ) by grizzly bears was completed. Our manuscript on consumption rates of whitebark pine was published in the Canadian Journal of Zoology 81:763-770. Results of the mercury studies were also published in the Canadian Journal of Zoology 82:493–501. Copies can be found on the IGBST website http://www.nrmsc.usgs.gov/research/igbst-home.htm. Based upon this work, we submitted a proposal to analyze all historic tissue samples from grizzly bears in the ecosystem. That proposal was funded and samples have been sent to a lab for isotopic analysis. We hope to have those results in early 2008. Results of DNA hair snaring work conducted on Yellowstone Lake were submitted and published in the Journal Ursus (Haroldson et al. 2005). Results of this study conducted from 1997–2000 showed a decline in fish use by grizzly bears when compared to earlier work conducted by Reinhart (1990) in 1985–1987. As a consequence, the IGBST submitted a proposal to the National Park Service and received 3 years funding to repeat that work. This project began in 2007. There are 2 graduate students and several field technicians working on the program. We completed the final field season in Grand Teton National Park evaluating habitat use both temporally and spatially between grizzly and black bears ( Ursus americanus ). We continue to use GPS technology that incorporates a spread spectrum communication system. Spread spectrum allows for transfer of stored GPS locations from the collar to a remote receiving station. Results of the 2006 field season are reported here. We plan to complete the final report in late 2007. We continued to monitor the health of whitebark pine in the Greater Yellowstone Ecosystem (GYE) in cooperation with the Greater Yellowstone Whitebark Pine Monitoring Working Group. A summary of the 2006 monitoring is also presented (Appendix B). The IGBST uses counts of winter-killed ungulates to index spring carcass abundance for grizzly bears. Likewise, we use wier counts and stream surveys to index cutthroat trout abundance. We ask Dr. Steve Cherry, Department of Mathematical Sciences, Montana State University-Bozeman, to review the protocols and make recommendations for improving them. That review and recommendations are presented in Appendix C. Finally, the state of Wyoming, following recommendations from the Yellowstone Ecosystem Subcommittee and the IGBST, launched the Bear Wise Community Effort. The focus is to minimize human/bear conflicts, minimize human-caused bear mortalities associated with conflicts, and safeguard the human community. Results of these efforts are detailed in Appendix D. The annual reports of the IGBST summarize annual data collection. Because additional information can be obtained after publication, data summaries are subject to change. For that reason, data analyses and summaries presented in this report supersede all previously published data. The study area and sampling techniques are reported by Blanchard (1985), Mattson et al. (1991 a), and Haroldson et al. (1998).

Idaho, Montana, Wyoming↗
USGS2021

Mangroves and people: Impacts and interactions

Mangroves have long been associated with human populations, as coastal communities rely on the various ecosystem services that mangroves provide. However, human degradation and destruction of mangrove forests is common, despite and because of our reliance on them as valuable ecosystems. Mangrove research and management must elucidate and reconcile these conflicts to maintain mangrove forests and the services that humans depend on. To better understand the complex dynamics, interactions and relationships that exist between mangroves and coastal communities, the 5th Mangrove Macrobenthos and Management (MMM5) conference was held in Singapore in July 2019, with the theme “ Mangroves and People: Impacts and Interactions”. This theme was chosen because Southeast Asia is the epicentre of ongoing mangrove loss, and a large number of coastal communities in the region rely on the ecosystem services that mangroves provide. The 32 papers published in this Special Issue represent the breadth of mangrove research presented at MMM5, including topics in faunal biology, ecosystem ecology, genetics, physical geography, biogeochemistry, remote sensing and the social sciences. The articles are characterized under the following topics: 1) mangrove ecosystem functioning; 2) range expansion of mangroves; 3) ecosystem services of mangroves; 4) anthropogenic and natural threats to mangroves; and 5) the management and social-ecology of mangroves. This Special Issue highlights the current state of the art of mangrove research and application, and describes a number of emerging new ideas and research opportunities that will continue to advance mangrove ecosystem science into the future.

Estuarine, Coastal and Shelf Science↗
USGS2007

A cold phase of the East Pacific triggers new phytoplankton blooms in San Francisco Bay

Ecological observations sustained over decades often reveal abrupt changes in biological communities that signal altered ecosystem states. We report a large shift in the biological communities of San Francisco Bay, first detected as increasing phytoplankton biomass and occurrences of new seasonal blooms that began in 1999. This phytoplankton increase is paradoxical because it occurred in an era of decreasing wastewater nutrient inputs and reduced nitrogen and phosphorus concentrations, contrary to the guiding paradigm that algal biomass in estuaries increases in proportion to nutrient inputs from their watersheds. Coincidental changes included sharp declines in the abundance of bivalve mollusks, the key phytoplankton consumers in this estuary, and record high abundances of several bivalve predators: Bay shrimp, English sole, and Dungeness crab. The phytoplankton increase is consistent with a trophic cascade resulting from heightened predation on bivalves and suppression of their filtration control on phytoplankton growth. These community changes in San Francisco Bay across three trophic levels followed a state change in the California Current System characterized by increased upwelling intensity, amplified primary production, and strengthened southerly flows. These diagnostic features of the East Pacific "cold phase" lead to strong recruitment and immigration of juvenile flatfish and crustaceans into estuaries where they feed and develop. This study, built from three decades of observation, reveals a previously unrecognized mechanism of ocean-estuary connectivity. Interdecadal oceanic regime changes can propagate into estuaries, altering their community structure and efficiency of transforming land-derived nutrients into algal biomass.

California↗
USGS2004

Slow recovery in desert perennial vegetation following prolonged human disturbance

Questions: How long may it take for desert perennial vegetation to recover from prolonged human disturbance and how do different plant community variables (i.e. diversity, density and cover) change during the recovery process? Location: Sonoran Desert, Arizona, USA. Methods: Since protection from grazing from 1907 onwards, plant diversity, density and cover of perennial species were monitored intermittently on ten 10 m x 10 m permanent plots on Tumamoc Hill, Tucson, Arizona, USA. Results: The study shows an exceptionally slow recovery of perennial vegetation from prolonged heavy grazing and other human impacts. Since protection, overall species richness and habitat heterogeneity at the study site continued to increase until the 1960s when diversity, density and cover had been stabilized. During the same period, overall plant density and cover also increased. Species turnover increased gradually with time but no significant relation between any of the three community variables and precipitation or Palmer Drought Severity Index (PDSI) was detected. Conclusions: It took more than 50 yr for the perennial vegetation to recover from prolonged human disturbance. The increases in plant species richness, density, and cover of the perennial vegetation were mostly due to the increase of herbaceous species, especially palatable species. The lack of a clear relationship between environment (e.g. precipitation) and community variables suggests that site history and plant life history must be taken into account in examining the nature of vegetation recovery processes after disturbance.

Arizona↗
USGS2024

Design, development, and implementation of IsoBank: A centralized repository for isotopic data

Stable isotope data have made pivotal contributions to nearly every discipline of the physical and natural sciences. As the generation and application of stable isotope data continues to grow exponentially, so does the need for a unifying data repository to improve accessibility and promote collaborative engagement. This paper provides an overview of the design, development, and implementation of IsoBank , a community-driven initiative to create an open-access repository for stable isotope data implemented online in 2021. A central goal of IsoBank is to provide a web-accessible database supporting interdisciplinary stable isotope research and educational opportunities. To achieve this goal, we convened a multi-disciplinary group of over 40 analytical experts, stable isotope researchers, database managers, and web developers to collaboratively design the database. This paper outlines the main features of IsoBank and provides a focused description of the core metadata structure. We present plans for future database and tool development and engagement across the scientific community. These efforts will help facilitate interdisciplinary collaboration among the many users of stable isotopic data while also offering useful data resources and standardization of metadata reporting across eco-geoinformatics landscapes.

PLoS ONE↗