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At least 649 records · Page 36Linked to original sources
USGS1998

Multi-level slug tests in highly permeable formations: 2. Hydraulic conductivity identification, method verification, and field applications

Using the developed theory and modified Springer-Gelhar (SG) model, an identification method is proposed for estimating hydraulic conductivity from multi-level slug tests. The computerized algorithm calculates hydraulic conductivity from both monotonic and oscillatory well responses obtained using a double-packer system. Field verification of the method was performed at a specially designed fully penetrating well of 0.1-m diameter with a 10-m screen in a sand and gravel alluvial aquifer (MSEA site, Shelton, Nebraska). During well installation, disturbed core samples were collected every 0.6 m using a split-spoon sampler. Vertical profiles of hydraulic conductivity were produced on the basis of grain-size analysis of the disturbed core samples. These results closely correlate with the vertical profile of horizontal hydraulic conductivity obtained by interpreting multi-level slug test responses using the modified SG model. The identification method was applied to interpret the response from 474 slug tests in 156 locations at the MSEA site. More than 60% of responses were oscillatory. The method produced a good match to experimental data for both oscillatory and monotonic responses using an automated curve matching procedure. The proposed method allowed us to drastically increase the efficiency of each well used for aquifer characterization and to process massive arrays of field data. Recommendations generalizing this experience to massive application of the proposed method are developed.Using the developed theory and modified Springer-Gelhar (SG) model, an identification method is proposed for estimating hydraulic conductivity from multi-level slug tests. The computerized algorithm calculates hydraulic conductivity from both monotonic and oscillatory well responses obtained using a double-packer system. Field verification of the method was performed at a specially designed fully penetrating well of 0.1-m diameter with a 10-m screen in a sand and gravel alluvial aquifer (MSEA site, Shelton, Nebraska). During well installation, disturbed core samples were collected every 0.6 m using a split-spoon sampler. Vertical profiles of hydraulic conductivity were produced on the basis of grain-size analysis of the disturbed core samples. These results closely correlate with the vertical profile of horizontal hydraulic conductivity obtained by interpreting multi-level slug test responses using the modified SG model. The identification method was applied to interpret the response from 474 slug tests in 156 locations at the MSEA site. More than 60% of responses were oscillatory. The method produced a good match to experimental data for both oscillatory and monotonic responses using an automated curve matching procedure. The proposed method allowed us to drastically increase the efficiency of each well used for aquifer characterization and to process massive arrays of field data. Recommendations generalizing this experience to massive application of the proposed method are developed.

Journal of Hydrology↗
USGS2017

Best practices for assessing forage fish fisheries-seabird resource competition

Worldwide, in recent years capture fisheries targeting lower-trophic level forage fish and euphausiid crustaceans have been substantial (∼20 million metric tons [MT] annually). Landings of forage species are projected to increase in the future, and this harvest may affect marine ecosystems and predator-prey interactions by removal or redistribution of biomass central to pelagic food webs. In particular, fisheries targeting forage fish and euphausiids may be in competition with seabirds, likely the most sensitive of marine vertebrates given limitations in their foraging abilities (ambit and gape size) and high metabolic rate, for food resources. Lately, apparent competition between fisheries and seabirds has led to numerous high-profile conflicts over interpretations, as well as the approaches that could and should be used to assess the magnitude and consequences of fisheries-seabird resource competition. In this paper, we review the methods used to date to study fisheries competition with seabirds, and present “best practices” for future resource competition assessments. Documenting current fisheries competition with seabirds generally involves addressing two major issues: 1) are fisheries causing localized prey depletion that is sufficient to affect the birds? (i.e., are fisheries limiting food resources?), and 2) how are fisheries-induced changes to forage stocks affecting seabird populations given the associated functional or numerical response relationships? Previous studies have been hampered by mismatches in the scale of fisheries, fish, and seabird data, and a lack of causal understanding due to confounding by climatic and other ecosystem factors (e.g., removal of predatory fish). Best practices for fisheries-seabird competition research should include i) clear articulation of hypotheses, ii) data collection (or summation) of fisheries, fish, and seabirds on matched spatio-temporal scales, and iii) integration of observational and experimental (including numerical simulation) approaches to establish connections and causality between fisheries and seabirds. As no single technique can provide all the answers to this vexing issue, an integrated approach is most promising to obtain robust scientific results and in turn the sustainability of forage fish fisheries from an ecosystem perspective.

Fisheries Research↗
USGS2006

Influence of a dam on fine-sediment storage in a canyon river

Glen Canyon Dam has caused a fundamental change in the distribution of fine sediment storage in the 99-km reach of the Colorado River in Marble Canyon, Grand Canyon National Park, Arizona. The two major storage sites for fine sediment (i.e., sand and finer material) in this canyon river are lateral recirculation eddies and the main-channel bed. We use a combination of methods, including direct measurement of sediment storage change, measurements of sediment flux, and comparison of the grain size of sediment found in different storage sites relative to the supply and that in transport, in order to evaluate the change in both the volume and location of sediment storage. The analysis shows that the bed of the main channel was an important storage environment for fine sediment in the predam era. In years of large seasonal accumulation, approximately 50% of the fine sediment supplied to the reach from upstream sources was stored on the main-channel bed. In contrast, sediment budgets constructed for two short-duration, high experimental releases from Glen Canyon Dam indicate that approximately 90% of the sediment discharge from the reach during each release was derived from eddy storage, rather than from sandy deposits on the main-channel bed. These results indicate that the majority of the fine sediment in Marble Canyon is now stored in eddies, even though they occupy a small percentage (???17%) of the total river area. Because of a 95% reduction in the supply of fine sediment to Marble Canyon, future high releases without significant input of tributary sediment will potentially erode sediment from long-term eddy storage, resulting in continued degradation in Marble Canyon. Copyright 2006 by the American Geophysical Union.

Journal of Geophysical Research F: Earth Surface↗
USGS2006

Morphology of androgenetic and gynogenetic grass carp, Ctenopharyngodon idella (Valenciennes)

Crosses between female carp x male grass carp resulted in androgenetic grass carp and hybrids. Fertilizing grass carp eggs with carp milt that had been irradiated with ultraviolet light for 15 min at 1.0 mW/cm 2 produced gynogenetic grass carp. We compared the morphology of experimental progeny with that of the parental species to determine if inheritance was strictly matroclinous in gynogenesis and strictly patroclinous in andro-genesis. Dorsal and anal fin rays, lateral line scales, gill rakers, pharyngeal teeth, and the relative length of the dorsal fin all suggested that gynogenetic grass carp were identical with the maternal species and androgenetic grass carp with the paternal species. Hybrids were intermediate between the parents except that the number of anal rays was identical with that in carp. The number of dorsal rays, the body depth, and the pharyngeal teeth in hybrids were more like those in carp than in grass carp, whereas the number of gill rakers was more similar to that in the paternal species.

Journal of Fish Biology↗
USGS1987

LAGRANGIAN MODELING OF A SUSPENDED-SEDIMENT PULSE.

The one-dimensional Lagrangian Transport Model (LTM) has been applied in a quasi two-dimensional manner to simulate the transport of a slug injection of microbeads in steady experimental flows. A stationary bed segment was positioned below each parcel location to simulate temporary storage of beads on the bottom of the flume. Only one degree of freedom was available for all three bead simulations. The results show the versatility of the LTM and the ability of the LTM to accurately simulate transport of fine suspended sediment.

Conference Paper↗
USGS2007

Variation in salinity tolerance, gill Na+/K+-ATPase, Na+/K+/2Cl– cotransporter and mitochondria-rich cell distribution in three salmonids Salvelinus namaycush, Salvelinus fontinalis and Salmo salar

We compared seawater tolerance, gill Na + /K + -ATPase and Na + /K + /2Cl – cotransporter (NKCC) abundance, and mitochondria-rich cell (MRC) morphology of three salmonids, lake trout Salvelinus namaycush , brook trout Salvelinus fontinalis and Atlantic salmon Salmo salar . They were transferred directly from 0 p.p.t. (parts per thousand; freshwater) to 30 p.p.t. seawater, or transferred gradually from 0 to 10, 20 and 30 p.p.t. at 1-week intervals and kept in 30 p.p.t. for 3 weeks. The survival rates of lake trout, brook trout and Atlantic salmon were 80%, 50% and 100% following direct transfer, and 80%, 100% and 100% during gradual transfer, respectively. Plasma Na + , K + and Cl – concentrations in surviving lake trout increased rapidly and remained at high levels in 30 p.p.t. of both direct and gradual transfer, whereas those in brook trout showed a transient increase following direct transfer but did not change significantly during gradual transfer. Only minor changes in plasma ions were observed in Atlantic salmon smolts in both direct and gradual transfer. These results suggest that lake trout retains some degree of euryhalinity and that brook trout possesses intermediate euryhalinity between lake trout and Atlantic salmon smolts. Gill Na + /K + -ATPase activity of lake trout and brook trout increased in seawater, whereas that of Atlantic salmon smolts was already upregulated in freshwater and remained high after seawater exposure. NKCC abundance was upregulated in parallel with gill Na + /K + -ATPase activity in each species. Immunocytochemistry with anti-Na + /K + -ATPaseα -subunit and anti-NKCC revealed that the two ion transporters were colocalized on the basolateral membrane of gill MRCs. Immunopositive MRCs were distributed on both primary filaments and secondary lamellae in all three species kept in freshwater; following transfer to seawater this pattern did not change in lake trout and brook trout but lamellar MRCs disappeared in Atlantic salmon. Previous studies on several teleost species have suggested that filament and lamellar MRCs would be involved in seawater and freshwater acclimation, respectively. However, our results in lake trout and brook trout suggest that lamellar MRCs could be also functional during seawater acclimation.

Journal of Experimental Biology↗
USGS2023

Respiratory acclimation of tropical forest roots in response to in situ experimental warming and hurricane disturbance

Climate projections predict higher temperatures and more frequent hurricanes in the tropics. Tropical plants subjected to these stresses may respond by acclimating their physiology. We investigated tropical forest root respiration in response to in situ experimental warming and hurricane disturbance in eastern Puerto Rico. We measured mass-normalized root specific respiration, root biomass, and root traits at the Tropical Responses to Altered Climate Experiment (TRACE), where understory vegetation is warmed + 4 °C above ambient. Our measurements span 5 years, including before and after two major hurricanes, to quantify root contributions to ecosystem carbon fluxes. Experimental warming did not affect root specific respiration at a standard temperature of 25° (RSR 25 , mean = 3.89 nmol CO 2 g −1 s −1 ) or the temperature sensitivity of root respiration (Q 10 , mean = 1.75), but did result in decreased fine-root biomass, thereby decreasing area-based estimations of ecosystem-level root respiration in warmed plots by ~ 35%. RSR 25 of newer roots, which increased with increasing root nitrogen, showed greater rates 6 months after the hurricanes, but subsequently decreased after 12 months. Root specific respiration did not acclimate to higher temperatures, based on lack of adjustments in either Q 10 or RSR 25 in the warmed plots; however, decreased root biomass indicates the root contribution to soil carbon dioxide efflux was overall lower with warming. Lower root biomass may also limit nutrient and water uptake, having potential negative effects on carbon assimilation. Our results show that warming and hurricane disturbance have strong potential to affect tropical forest roots, as well as ecosystem carbon fluxes.

Ecosystems↗
USGS2012

Climate impacts on bird and plant communities from altered animal-plant interactions

The contribution of climate change to declining populations of organisms remains a question of outstanding concern. Much attention to declining populations has focused on how changing climate drives phenological mismatches between animals and their food. Effects of climate on plant communities may provide an alternative, but particularly powerful, influence on animal populations because plants provide their habitats. Here, we show that abundances of deciduous trees and associated songbirds have declined with decreasing snowfall over 22 years of study in montane Arizona, USA. We experimentally tested the hypothesis that declining snowfall indirectly influences plants and associated birds by allowing greater over-winter herbivory by elk (Cervus canadensis). We excluded elk from one of two paired snowmelt drainages (10 ha per drainage), and replicated this paired experiment across three distant canyons. Over six years, we reversed multi-decade declines in plant and bird populations by experimentally inhibiting heavy winter herbivory associated with declining snowfall. Moreover, predation rates on songbird nests decreased in exclosures, despite higher abundances of nest predators, demonstrating the over-riding importance of habitat quality to avian recruitment. Thus, our results suggest that climate impacts on plant–animal interactions can have forceful ramifying effects on plants, birds, and ecological interactions.

Arizona↗
USGS2022

Analog field-scale acoustic study of volcanic eruption directivity using a tiltable liquid nitrogen-charged water cannon

Laterally directed explosive eruptions are responsible for multiple fatalities over the past decade and are an increasingly important volcanology problem. To understand the energy dynamics for these events, we collected field-scale explosion data from nine acoustic sensors surrounding a tiltable cannon as part of an exploratory experimental design. For each cannon discharge, the blast direction was varied systematically at 0°, 12°, and 24° from vertical, capturing acoustic wavefield directivity related to the tilt angle. While each event was similar in energy discharge potential, the resulting acoustic signal features were variable event-to-event, producing non-repetitious waveforms and spectra. Systematic features were observed in a subset of individual events for vertical and lateral discharges. For vertical discharges, the acoustic energy had a uniform radiation pattern. The lateral discharges showed an asymmetric radiation pattern with higher frequencies in the direction of the blast and depletion of those frequencies behind the cannon. Results suggest that, in natural volcanic systems, near-field blast directionality may be elucidated from acoustic sensors in absence of visual data, with implications for volcano monitoring and hazard assessment.

Earth, Planets and Space↗
USGS2004

Total dissolved gas and water temperature in the lower Columbia river, Oregon and Washington, 2004: Quality-assurance data and comparison to water-quality standards

Significant Findings When water is released through the spillways of dams, air is entrained in the water, increasing the downstream concentration of total dissolved gas. Excess dissolved-gas concentrations can have adverse effects on freshwater aquatic life. The U.S. Geological Survey (USGS), in cooperation with the U.S. Army Corps of Engineers (USACE), collected total-dissolved-gas (TDG) and water-temperature data at eight sites on the lower Columbia River in 2004. Significant findings from the data include: Variances to the Oregon and Washington water-quality standards for total dissolved gas were exceeded on a few days at three of the monitoring sites: Camas, The Dalles forebay, and Bonneville forebay. These exceedances may have been the result of the cumulative effects of supersaturated water moving downstream through the lower Columbia River. Apparently, the levels of TDG did not dissipate rapidly enough downstream from the dams before reaching the next site. TDG levels at an experimental monitoring site directly below Bonneville Dam at Cascade Island showed a larger response to spill than the site 5.5 miles farther downstream at Warrendale. From mid-July to mid-September, water temperatures were above 20°C (degrees Celsius) at each of the seven lower Columbia River sites. Both the Oregon and Washington water-quality standards contain a numerical standard of 20°C for the lower Columbia River. The new location of the forebay monitoring site at John Day navigation lock showed less daily temperature variation than the previous location. The probe at the new site was farther away from the dam and at a greater depth, so it apparently avoided the daily temperature excursions associated with the surface-layer heating at the previous site. Most field checks of total-dissolved-gas sensors with a secondary standard were within ±1% saturation. Most of the field checks of barometric pressure were within ±1 mm Hg (millimeter of mercury) of a secondary standard, and water temperature field checks were all within ±0.1°C. For the seven monitoring sites used to regulate spill in water year 2004, an average of 99.0% of the total- dissolved-gas data were received in real time by the USGS satellite downlink and were within 1% saturation of the expected value, based on calibration data, replicate quality-control measurements in the river, and comparison to ambient river conditions at adjacent sites.

Oregon, Washington↗
USGS1956

X-ray powder data for uranium and thorium minerals

The U.S. Geological Survey has in preparation a comprehensive volume on the mineralogy of uranium and thorium. This work has been done as part of a continuing systematic survey of data on uranium and thorium minerals on behalf of the Division of Raw Materials, U.S. Atomic Energy Commission. Pending publication of this volume and in response to a widespread demand among workers in uranium and thorium mineralogy, the X-ray powder diffraction data for the known minerals that contain uranium or thorium as an essential constituent are presented here. The coverage is complete except for a few minerals for which there are no reliable data owing to lack of authentic specimens. With the exception of that for ianthinite, the new data either originated in the Geological Survey or in the Mineralogical Laboratory of Harvard University. Data from the literature or other sources were cross-checked against the files of standard patterns of these laboratories; the sources are indicated in the references. Data not accompanied by a reference were obtained from films in the Harvard Standard File and cross-checked as to the identity of the film with the Geological Survey's file. Minor differences can be expected in the d-spacings reported for the same specimens by different investigators because of the manner of preparation of the mount, the conditions of X-ray irradiation, and the method of photography and measurement of the film or chart. The Harvard and Geological Survey data all were obtained from films taken in 114-mm diameter cameras, using either ethyl cellulose and toluene or collodion spindle mounts and Straumanis-type film mounting. Unless otherwise indicated all patterns were taken with copper radiation (Kα 1.5418 A.) and nickel filter and data are given in Angstrom units. The d-spacings are not corrected for film shrinkage. The correction ordinarily is small and in general is less than either the variation in spacing arising from differences in experimental technique of different investigators, including the varying absorption of samples of different thickness and concentration, or the variation attending slight changes in the chemical composition of the mineral. Some uranium minerals give poor diffraction patterns. The best results are generally obtained by using relatively small diameter spindles and long exposures, with a take-off angle from teh X-ray tube of about 4°. It is sometimes advantageous to shield the film from fluorescence in the visible region excited by X-ray irradiation. Copper radiation is preferable. The patterns of a few uranium minerals are greatly impaired by heavy grinding of the sample. Light crushing of the coarse sample after mixing with about one-third its volume of coarsely powdered low-absorption glass is helpful. Many uranium minerals, such as the members of the torbernite group, readily lose zeolithic water or transform to lower hydrates at or near ordinary conditions of temperature and humidity and care should be taken to control this in the manner of preservation and preparation of the sample.

Trace Elements Investigations↗
USGS1970

The thin eggshell problem

It has long been known that DDT and related chemicals can impair the reproduction of birds. In early years of organochlorine pesticide use, widespread mortality occurred immediately following heavy applications of these chemicals, and survivors contained substantial amounts of toxicant in their tissues. Repopulation from untreated areas tended to conceal the extent of the effects. DDT and dieldrin have become ubiquitous and the original source of the chemicals producing bird deaths often cannot be traced. The extent of sublethal effects cannot be fully appraised, although laboratory experiments continually reveal new and potentially deleterious physiological reactions. Thin eggshells have become prevalent among certain declining species of predatory birds. Shell thinning and associated reproductive effects have been produced experimentally in mallard ducks and in sparrow hawks. Coturnix quail fed dietary dosages of p,p'-DDT produced fewer eggs than did untreated birds and the eggs had thinner shells. Hatchability was not significantly altered. Comparisons between these results and those obtained in other studies indicate significant species differences.

Book chapter↗
USGS1975

Determining earthquake recurrence intervals from deformational structures in young lacustrine sediments

Examination of the silty sediments in the lower Van Normal reservoir after the 1971 San Fernando, California earthquake revealed three zones of deformational structures in the 1-m-thick sequence of sediments exposed over about 2 km 2 of the reservoir bottom. These zones are correlated with moderate earthquakes that shook the San Fernando area in 1930, 1952, and 1971. The success of this study, coupled with the experimental formation of deformational structures similar to those of the Van Norman reservoir, led to a search for similar structures in Pleistocene and Holocene lakes and lake sediments in other seismically active areas. Thus, studies have been started in Pleistocene and Holocene silty and sandy lake sediments in the Imperial Valley, southeastern California; Clear Lake, in northern California; and the Puget Sound area of Washington. The Imperial Valley study has yielded spectacular results: five zones of structures in the upper 10 m of Late Holocene sediments near Brawley have been correlated over an area of approximately 100 km 2 , using natural outcrops. These structures are similar to those of the Van Norman reservoir and are interpreted to represent at least five moderate to large earthquakes that affected the southern Imperial Valley area during Late Holocene time. The Clear Lake study has provided ambiguous results with respect to determination of earthquake recurrence intervals because the cores studied are in clayey rich in organic material sediments that have low liquefaction potential. A study of Late Pleistocene varved glacio-lacustrine sediments has been started in the Puget Sound area of Washington, and thirteen sites have been examined. One has yielded 18.75 m of sediments that contains 1,804 varves and fourteen deformed zones interpreted as being caused by earthquake, because they are identical to structures formed experimentally by simulated seismic shaking. Correlation of deformational structures with seismic events is based on: (1) proximity to presently active seismic zones; (2) presence of potentially liquefiable sediments; (3) similarity to structures formed experimentally; (4) small-scale internal structures within deformed zones that suggest liquefaction; (5) structures restricted to single stratigraphic intervals; (6) zones of structures correlatable over large areas; and (7) absence of detectable influence by slopes, slope failures, or other sedimentological, biological, or deformational processes.

Tectonophysics↗
USGS2017

Pushing precipitation to the extremes in distributed experiments: Recommendations for simulating wet and dry years

Intensification of the global hydrological cycle, ranging from larger individual precipitation events to more extreme multiyear droughts, has the potential to cause widespread alterations in ecosystem structure and function. With evidence that the incidence of extreme precipitation years (defined statistically from historical precipitation records) is increasing, there is a clear need to identify ecosystems that are most vulnerable to these changes and understand why some ecosystems are more sensitive to extremes than others. To date, opportunistic studies of naturally occurring extreme precipitation years, combined with results from a relatively small number of experiments, have provided limited mechanistic understanding of differences in ecosystem sensitivity, suggesting that new approaches are needed. Coordinated distributed experiments (CDEs) arrayed across multiple ecosystem types and focused on water can enhance our understanding of differential ecosystem sensitivity to precipitation extremes, but there are many design challenges to overcome (e.g., cost, comparability, standardization). Here, we evaluate contemporary experimental approaches for manipulating precipitation under field conditions to inform the design of ‘Drought-Net’, a relatively low-cost CDE that simulates extreme precipitation years. A common method for imposing both dry and wet years is to alter each ambient precipitation event. We endorse this approach for imposing extreme precipitation years because it simultaneously alters other precipitation characteristics (i.e., event size) consistent with natural precipitation patterns. However, we do not advocate applying identical treatment levels at all sites – a common approach to standardization in CDEs. This is because precipitation variability varies >fivefold globally resulting in a wide range of ecosystem-specific thresholds for defining extreme precipitation years. For CDEs focused on precipitation extremes, treatments should be based on each site's past climatic characteristics. This approach, though not often used by ecologists, allows ecological responses to be directly compared across disparate ecosystems and climates, facilitating process-level understanding of ecosystem sensitivity to precipitation extremes.

Global Change Biology↗
USGS1966

Spermatogenesis in bald eagles experimentally fed a diet containing DDT

When Bald Eagles were fed DDT in the diet at the level of 10 ppm (dry weight basis) for periods of 60 and 120 days, there was no interference with spermatogenic activity. Degenerative testicular changes were produced only by levels of DDT that produced abnormal neurological signs and usually resulted in death. Histological examination of these testes indicates that Bald Eagles have a seasonal testicular cycle similar to that reported for many other birds of the Northern Hemisphere.

Condor↗
USGS1993

History of greenness mapping at the EROS data center

In 1987, the U.S. Geological Survey's EROS Data Center (EDC)installed a system to acquire, process, and distribute advanced very high resolution radiometer (AVHRR) satellite image data collected over North America. Using this system, the EDC began an experimental greenness mapping program as part of the U.S. Agency for the International Development Famine Early Warning System. The program used the greenness information derived from AVHRR data to identify potential outbreaks of locusts and grasshoppers in the Sahelian region of Africa. In 1988, the EDC began greenness mapping projects in Africa and the northern Great Plains of the United States. In 1989, the system was augmented to acquire AVHRR information for the rest of the world. As a result, the greenness mapping program was able to collect data for fire danger assessment, agricultural assessment, and land characterization. Illustrations of each of the mapping projects trace the chronology of the greenness mapping program at the EDC. Displays represent the initial activity in Africa and the transition of the north Great Plains project to the current conterminous U.S. project. The program's expansion to include Alaska, Eurasia, a prototype North America data set, and ultimately, an experimental global land 1-km product is also shown. The poster describes major technical advances in data processing, the development of derivative products, the magnitude of the data volume of each level, and major applications.

Pecora 12 Symposium↗
USGS2025

Landscape transcriptomic analysis detects thermal stress responses and potential adaptive variation in wild brook trout (Salvelinus fontinalis) during successive heatwaves

Extreme weather events, such as heatwaves, are becoming more frequent and intense as a result of climate change. Critically, such extreme weather events can be more important drivers of extirpation and selection than changes in annual or seasonal averages and they pose a particularly large threat to poikilothermic organisms. In this study, we evaluated the transcriptomic response of a coldwater adapted fish species, the eastern brook trout ( Salvelinus fontinalis ), to two successive heatwaves during July and August 2022. We sampled brook trout at eight time points from four streams ( N = 116 fish), sequenced mRNA from gill samples using TagSeq, and quantified expression levels of 32,670 unique transcripts. Multivariate analyses found that overall expression patterns in response to water temperature change were similar among streams. These analyses further detected groups of genes involved in immune response and oxygen carrier activity that were upregulated and downregulated respectively at higher water temperatures. We also detected 43 genes that were differentially expressed at different time points and followed the same expression pattern during the two heatwaves. Of these genes, 42 covaried with water temperature and most (27, 62.8 %) exhibited responses that varied by stream. Some of the differentially expressed genes, including heat shock proteins and cold-inducible RNA binding proteins, have been widely linked to temperature responses in experimental studies, whereas other genes we identified have functions that have not been well-studied in relationship to temperature or have unknown functions. This study shows the utility of landscape transcriptomic approaches to identify important biological processes governing wild organismal responses to short-term stressors. The results of this study can guide future investigations to identify phenotypic and genetic diversity that contribute to adaptive responses to heatwaves and improve predictions of how populations will respond to future climate change.

Pennsylvania↗
USGS2018

Simulation of less‐mobile porosity dynamics in contrasting sediment water interface porous media

Considering heterogeneity in porous media pore size and connectivity is essential to predicting reactive solute transport across interfaces. However, exchange with less‐mobile porosity is rarely considered in surface water/groundwater recharge studies. Previous research indicates that a combination of pore‐fluid sampling and geoelectrical measurements can be used to quantify less‐mobile porosity exchange dynamics using the time‐varying relation between fluid and bulk electrical conductivity. For this study, we use macro‐scale (10 s of cm) advection–dispersion solute transport models linked with electrical conduction in COMSOL Multiphysics to explore less‐mobile porosity dynamics in two different types of observed sediment water interface porous media. Modeled sediment textures contrast from strongly layered streambed deposits to poorly sorted lakebed sands and cobbles. During simulated ionic tracer perturbations, a lag between fluid and bulk electrical conductivity, and the resultant hysteresis, is observed for all simulations indicating differential loading of pore spaces with tracer. Less‐mobile exchange parameters are determined graphically from these tracer time series data without the need for inverse numerical model simulation. In both sediment types, effective less‐mobile porosity exchange parameters are variable in response to changes in flow direction and fluid flux. These observed flow‐dependent effects directly impact local less‐mobile residence times and associated contact time for biogeochemical reaction. The simulations indicate that for the sediment textures explored here, less‐mobile porosity exchange is dominated by variable rates of advection through the domain, rather than diffusion of solute, for typical low‐to‐moderate rate (approximately 3–40 cm/day) hyporheic fluid fluxes. Overall, our model‐based results show that less‐mobile porosity may be expected in a range of natural hyporheic sediments and that changes in flowpath orientation and magnitude will impact less‐mobile exchange parameters. These temporal dynamics can be assessed with the geoelectrical experimental tracer method applied at laboratory and field scales.

Hydrological Processes↗