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Estuarine environments as rearing habitats for juvenile Coho Salmon in contrasting south-central Alaska watersheds

For Pacific salmon, estuaries are typically considered transitional staging areas between freshwater and marine environments, but their potential as rearing habitat has only recently been recognized. The objectives of this study were two-fold: (1) to determine if Coho Salmon Oncorhynchus kisutch were rearing in estuarine habitats, and (2) to characterize and compare the body length, age, condition, and duration and timing of estuarine occupancy of juvenile Coho Salmon between the two contrasting estuaries. We examined use of estuary habitats with analysis of microchemistry and microstructure of sagittal otoliths in two watersheds of south-central Alaska. Juvenile Coho Salmon were classified as estuary residents or nonresidents (recent estuary immigrants) based on otolith Sr : Ca ratios and counts of daily growth increments on otoliths. The estuaries differed in water source (glacial versus snowmelt hydrographs) and in relative estuarine and watershed area. Juvenile Coho Salmon with evidence of estuary rearing were greater in body length and condition than individuals lacking evidence of estuarine rearing. Coho Salmon captured in the glacial estuary had greater variability in body length and condition, and younger age-classes predominated the catch compared with the nearby snowmelt-fed, smaller estuary. Estuary-rearing fish in the glacial estuary arrived later and remained longer (39 versus 24 d of summer growth) during the summer than did fish using the snowmelt estuary. Finally, we observed definitive patterns of overwintering in estuarine and near shore environments in both estuaries. Evidence of estuary rearing and overwintering with differences in fish traits among contrasting estuary types refute the notion that estuaries function as only staging or transitional habitats in the early life history of Coho Salmon.

Alaska↗

The dependence of estuarine turbidity on tidal intrusion length, tidal range and residence time

It is shown that there is a marked tendency for long, strongly tidal estuaries to have greater suspended particulate matter (SPM) concentrations within their high-turbidity regions than shorter estuaries with comparable tidal ranges at their mouths, or weakly tidal estuaries. Using consistently derived data from 44 estuaries in Europe and the Americas, contours of the logarithm of maximum estuarine SPM concentration are shown to be reasonably smooth when plotted against the logarithm of mean spring tidal range (at the estuary mouth) and the logarithm of estuarine tidal length. Predictions from the plot are compared with published observations made in the Delaware, Scheldt, Rio de la Plata, Gironde, Bay of Fundy, Changjiang (Yangtze), Amazon, Patos Lagoon and the Hawkesbury Estuary and it is shown that, qualitatively, there are no serious discrepancies. Short, weakly tidal estuaries are predicted to have very low ‘intrinsic’ SPM concentrations. High SPM concentrations in these estuaries would most likely be the result of either locally generated wave resuspension, high freshwater sediment loads due to freshets, or intruding seawater carrying suspended sediments derived from wave activity in the coastal zone. Application of a generic tidal model demonstrates that longer estuaries possess faster tidal currents for a given tidal range at their mouth and, in the presence of a supply of erodable fine sediment, therefore (by implication) produce greater concentrations of SPM that can be accumulated within a turbidity maximum. The same is true if the tidal range is increased for estuaries of a given length. These features are illustrated by comparing surveys of SPM data from two large estuaries possessing greatly different tidal ranges (the microtidal, medium turbidity Potomac and the macrotidal, highly turbid Humber-Ouse) and a third, much smaller but strongly tidal estuary (the low-turbidity Tweed). It is demonstrated that longer estuaries tend to have longer flushing times for solutes than shorter systems and that larger tides tend to reduce flushing times, although the tidal influence is secondary. Short, rapidly flushed estuaries quickly lose their erodable fine sediment to the coastal zone during freshets and during the ebbing currents of spring tides. Turbidity is therefore small during low runoff, low wave activity conditions. Very long, very slowly flushed estuaries are unlikely to lose a significant fraction of their resuspended sediments during freshets or individual ebb tides and are therefore able to accumulate large and increasing amounts of fine sediment in the long-term. Turbidity within them is therefore high during the fast currents of large spring tides.

Continental Shelf Research↗

Oyster model inventory: Identifying critical data and modeling approaches to support restoration of oyster reefs in coastal U.S. Gulf of Mexico waters

Executive Summary Along the coast of the U.S. Gulf of Mexico, the eastern oyster ( Crassostrea virginica ) plays important ecological and economic roles. Commercial landings from this region account for more than 50 percent of all U.S. landings; these oyster reefs also provide varied ecosystem services, including nursery habitat for many fish and macroinvertebrate species, shoreline protection, and water-quality maintenance. Declining trends in both total oyster production and functional reef area across this region have spurred investment in restoration of oyster resources, with specific calls for restoration projects to develop a network of reefs and identify broodstock and sanctuary reef restoration sites. Decision making related to restoration and establishment of a network of oyster reefs in the Gulf of Mexico requires information on both the environment and the effects of the environment on the oyster life cycle (including larval movement, survival, oyster recruitment, reproduction, growth, and mortality). Here, we examined the current state of data and model development in this region with the goal of providing an overview of oyster modeling approaches and an inventory of available data and existing oyster models. This report is meant to provide an overview to managers for understanding existing efforts and identify a path forward to most efficiently inform oyster resource management and restoration planning in moving from a single reef management approach to a reef network management approach. Numerous models related to some aspect of the oyster life cycle have been built, calibrated, and validated for various Gulf of Mexico estuaries over the last few decades (over 30 models identified). These models, which could inform site restoration, can be classified into four approaches: (1) oyster Habitat Suitability Index (HSI) models; (2) larval transport models; (3) on-reef oyster models that may include oyster growth, mortality and reproduction, and substrate persistence; and (4) coupled larval transport on-reef metapopulation models that simulate the entire oyster life cycle. The data requirements, model complexity and assumptions, and transferability vary by approach. Specifically, some approaches may offer greater accessibility, flexibility, and transferability spatially or temporally, with minimal data input, but only provide broad information to support site selection. In contrast, other approaches may require significant site-specific data for their construction and validation but may provide more accurate and location-specific data to support site selection for broodstock reefs. Regardless of modeling approach used, data on environmental drivers, such as salinity, water temperature, or water flow impacting oyster metabolism and movement, are required at appropriate spatial and temporal scales. While numerous data collection platforms, environmental models, and research products exist within Gulf of Mexico estuaries to provide important environmental data to use as drivers in the oyster models, significant variability in temporal and spatial coverage of the data, and variation in the availability of future condition models, exists across estuaries. This variation influences the spatial and temporal scales at which oyster models may be developed and impacts the calibration and validation of the oyster models within a given estuary, affecting its potential ability to address specific management or restoration questions. While multiple modeling approaches exist for informing site selection of broodstock or sanctuary oyster reefs, the development, calibration, and validation of a single modeling platform presents the most efficient, transferable, and useful tool for managers across the Gulf of Mexico. The development of a single modeling platform would involve using standardized input variables, governing equations, and assumptions for the modeled oyster processes and outputs, and for standardized calibration and validation procedures that could be applied within each estuary. The differences among estuary applications would require substituting only estuary-specific environmental data, and calibrating and validating the modeling approach with local oyster data. Two modeling approaches likely to be useful include (1) development of a general geospatial HSI modeling framework that could be applied consistently across estuaries and (2) a mechanistic coupled larval transport on-reef metapopulation model requiring only estuarine specific calibration and hydrodynamic models. Both approaches benefit from existing work across multiple Gulf of Mexico estuaries and could provide valuable support for oyster restoration, but may differ in their ability to address specific questions related to oyster restoration. HSI models specifically guide restoration practitioners in determining suitable habitat based on available data. The HSI approach, while currently more widely used and accessible, requires more development of larval suitability and larval input and output components in order to inform reef connectivity. A metapopulation approach considering the full oyster life cycle that simulates both on-reef oyster growth, mortality, reproduction, substrate persistence, and larval transport (ideally with larval growth and mortality) would provide the greatest detail and level of understanding but requires significant up-front investment. The larval oyster model and on-reef oyster model are usually developed independently for systems, although the two approaches can be coupled to represent the entire oyster life cycle in order to characterize and assess a reef metapopulation. This approach may be less accessible and much more data-intensive, however, and it requires some expertise to run and apply to inform oyster resource management. Ultimately, the development of single modeling platforms for each of these approaches would provide flexible tools applicable across all Gulf of Mexico oyster supporting estuaries. By using a single platform for model development, testing, calibrating and validating, and evaluation of modeled future scenarios, oyster restoration scientists and managers would not only be able to examine different scenario outcomes within a single estuary, but could also have comparable modeled results to evaluate potential outcomes, across estuaries and regions, that are not confounded by varying modeled data inputs, governing equations, assumptions, or user judgement.

Alabama, Florida, Louisiana, Mississippi, Texas↗

Physical, chemical, and biological characteristics of the Charlotte Harbor basin and estuarine system in southwestern Florida: A summary of the 1982-89 U.S. Geological Survey Charlotte Harbor assessment and other studies

The Charlotte Harbor estuarine system, having a surface area of about 270 square miles, averages about 7 feet in depth and is connected to deep water of the Gulf of Mexico through several passes and inlets between barrier islands. Three major rivers flow into the estuary--the Peace, the Myakka, and the Caloosahatchee. Freshwater and tidal flushing transport nutrients and other constituents from the basin through the estuary into the gulf. Flushing characteristics were evaluated using a two-dimensional hydrodynamic model. The model indicated that the time required to flush injected dye (simulated) from some subareas of the harbor was longer for reduced freshwater inflow than for typical freshwater inflow. After 30 days of simulation of reduced freshwater inflow, 42 percent of the dye injected into the upper harbor remained in the upper harbor, compared to 28 percent for typical freshwater inflow. The Charlotte Harbor estuary is usually well mixed or partially mixed in the vertical, but vertical salinity stratification does occur, primarily during late summer when freshwater inflows are greatest. A box model was developed that incorporated vertically averaged salinities to account indirectly for three-dimensional transport processes associated with vertical stratification. The box model predicts that under high (7,592 cubic feet per second) and average (2,470 cubic feet per second) freshwater inflows from the Peace and Myakka Rivers, 50 percent of the original water (present at the start of the model run) would be flushed from the northern part of the estuarine system into the Gulf of Mexico in 10 days and 20 days, respectively. The distribution of plant nutrients in the Charlotte Harbor Estuary is affected by nutrient inputs, freshwater and tidal flushing, mixing, and recycling processes in the estuary. The distributions of total phosphorus and orthophosphate are affected mainly by river input and physical mixing. The distribution of ammonia nitrogen is variable and is related more to recycling within the estuary than to input from the rivers. Ammonia concentrations increase in deeper water, probably in response to vertical salinity stratification and low concentrations of dissolved oxygen that foster regeneration of ammonia from bottom sediments. The distribution of nitrite plus nitrate nitrogen is nonconservative--concentrations are high in the rivers and decrease more rapidly in the estuary than expected due to dilution with sea water, probably because of phytoplankton uptake. Phytoplankton productivity and biomass are usually greatest during late summer near the mouths of the tidal rivers when freshwater inflow and nutrient loading are greatest. The highly colored freshwater runoff reduces light penetration and phytoplankton productivity in regions of the estuary where salinity is less than about 10 parts per thousand, but the nutrient-rich, colored water is diluted by seawater at midsalinities (10-20 parts per thousand) so that availability of light increases and inorganic nitrogen concentrations are still high enough to stimulate productivity and growth of phytoplankton. In much of the estuary, salinity is greater than 20 parts per thousand, and availability of inorganic nitrogen, not light, limits productivity and growth. Although the Charlotte Harbor estuarine system is relatively undisturbed, much of its basin has been altered by human activities. Streamflow decreased substantially during 1931-84 in parts of the Peace River, probably because of ground-water withdrawals in the basin. Nutrient concentrations generally increased in the rivers during 1970-85, because of an increase in the flow of wastewater and agricultural runoff. The concentrations of phosphorus are naturally high in the Peace River because of extensive phosphate deposits in the basin. The phosphate deposits also are relatively rich in radionuclides of the uranium-238 series, including radium-226. In the upper basin, these deposits are exposed in the riverbed. Extensive phosphate mining and processing have exposed additional deposits to surface runoff. Periodic spills of phosphate sediments (slimes) have contributed additional phosphorus and radium-226 to the river and estuary. A single spill can contribute a phosphorus load equal to the annual loading in the Peace River at Arcadia. The projected increase in population in the basin by the year 2020 would generate an additional 60 million gallons per day of domestic wastewater over that generated during 1980, which would increase nitrogen loading in the basin by more than 3 tons per day. Intensified agricultural and industrial developments, particularly expanding citrus production and phosphate mining, could generate additional loads of nutrients and a variety of inorganic and organic contaminants. Increased inputs of nutrients, particularly nitrogen, could encourage growth and increase abundance of phytoplankton and benthic and epiphytic algae. If water were less colored as a result of reduced freshwater inflow, undesirable algal growth could be exacerbated because of increased availability of light. Increased abundance of phytoplankton and other algae could likely change dissolved-oxygen concentrations in the estuary, resulting in greater day-to-night fluctuations and the possible depletion of dissolved oxygen in deep water. At the present time, near-anaerobic conditions occur for days or weeks in the deep water (more than 9 feet) of the northern harbor during late summer. These conditions could become more persistent with time and over wider areas, if phytoplankton and other algae increase in abundance and in their contribution to benthic oxygen demand. An increased abundance of phytoplankton and other algae also would reduce light penetration and adversely affect seagrasses.

Florida↗

Tidal flat sediments - texture, Willapa Bay, Washington

The purpose of this study was to texturally characterize the sediments of the mid-estuary tidal flats between Goose Point and Pickernell Creek in Willapa Bay, Washington and to compare these flats with other flats in the estuary. The mean grain size of sediments on tidal flats in the mid-estuary are fine sand (2-3 V). Sand shoals at the Bay entrance and erosion of cliffs between Goose Point and Pickernell Creek are the source of the sand. The subordinate mud fraction is supplied by rivers and creeks; little mud is deposited on the tidal flats except for those flats immediately adjacent to the rivers. Gravel is a minor component and is concentrated in sediments near the base of the cliffs high on the tidal flats. Variability in texture within the study area is most pronounced near the Palix River and Pickernell Creek. The average characteristics of mid-estuary tidal flat sediments are best described as poorly sorted, fine-grained sand with strongly-fine skewed leptokurtic distributions. Distribution patterns of textural parameters show consistent trends of hydraulic energy. Locally, textural patterns reflect (1) the coarsing effects of a flood current gyre between Goose Point and Sandy Point, and (2) relatively narrow flats (i.e., greater slopes) have coarser sediments proportionately higher upslope than wider flats. The following comparisons can be made between tide flats in Willapa Bay. Mean grain size varies systematically up-estuary permitting the estuary to be artificially divided into 3 parts: outer estuary = 2-3 Ø ; mid-estuary = 3-4 Ø ; and inner estuary = greater than 4 Ø . Outer estuarine tide flats extend deep into the estuary, particularly to the south. The transition from outer to inner estuarine tide flats based on textural differences is a rapid change (i.e., occurs over a short distance).

Washington↗

Estuarine salinity extremes: Using the Coastal Salinity Index to quantify the role of droughts, floods, hurricanes, and freshwater flow alteration

In the face of accelerating climate change, advancing understanding of how extreme climatic events influence estuarine salinities can help to inform resource management. Extreme salinities driven by droughts, hurricanes, floods, and freshwater flow alterations can lead to ecological transformations in estuarine ecosystems. Here, we applied the Coastal Salinity Index (CSI; Conrads and Darby 2017) to 22 years (1998–2020) of salinity data in a Louisiana estuary (Barataria Estuary, USA) to elucidate the impacts of extreme events on estuarine salinities. The CSI is an index to quantify salinity patterns at a specific location through long-term averages and deviations from historical average conditions. We calculated and compared CSI values for four stations distributed along an estuarine salinity gradient. We identified 10 events between 1998 and 2020 that produced extreme salinities, including two droughts, four hurricanes, three floods, and one freshwater diversion. The droughts of 2000 and 2006 caused surface water salinities to increase substantially throughout the estuary. The effects of hurricanes were highly variable, with some storms leading to elevated salinities throughout the entire estuary (e.g., Hurricanes Katrina and Rita in 2005), whereas other storms led to elevated salinities for some but not all stations (e.g., Hurricanes Gustav and Ike in 2008 or Hurricane Isaac in 2012). The opening of a freshwater river diversion in 2010 contributed to fresher conditions throughout the estuary and appeared to reduce or eliminate the increases in salinity that normally occur during the summer, although these effects were short-lived. Mississippi River floods in 2008, 2011, and 2019 reduced salinities throughout the estuary, but the effects were most pronounced in the lower estuary compared to the upper estuary. Collectively, our results advance understanding of the influence of extreme events on estuarine salinity regimes. Our analyses also highlight the value of the CSI for identifying periods with extreme salinities (i.e., extreme high or low salinities) via calculations that place salinity levels within and across estuaries within a historical context.

Louisiana↗

Coastal wetland adaptation to sea level rise: Quantifying potential for landward migration and coastal squeeze

Coastal wetland ecosystems are expected to migrate landwards in response to rising seas. However, due to differences in topography and coastal urbanization, estuaries vary in their ability to accommodate migration. Low‐lying urban areas can constrain migration and lead to wetland loss (i.e. coastal squeeze), especially where existing wetlands cannot keep pace with rising seas via vertical adjustments. In many estuaries, there is a pressing need to identify landward migration corridors and better quantify the potential for landward migration and coastal squeeze. We quantified and compared the area available for landward migration of tidal saline wetlands and the area where urban development is expected to prevent migration for 39 estuaries along the wetland‐rich USA Gulf of Mexico coast. We did so under three sea level rise scenarios (0.5, 1.0, and 1.5 m by 2100). Within the region, the potential for wetland migration is highest within certain estuaries in Louisiana and southern Florida (e.g. Atchafalaya/Vermilion Bays, Mermentau River, Barataria Bay, and the North and South Ten Thousand Islands estuaries). The potential for coastal squeeze is highest in estuaries containing major metropolitan areas that extend into low‐lying lands. The Charlotte Harbor, Tampa Bay, and Crystal‐Pithlachascotee estuaries (Florida) have the highest amounts of urban land expected to constrain wetland migration. Urban barriers to migration are also high in the Galveston Bay (Texas) and Atchafalaya/Vermilion Bays (Louisiana) estuaries. Synthesis and applications . Coastal wetlands provide many ecosystem services that benefit human health and well‐being, including shoreline protection and fish and wildlife habitat. As the rate of sea level rise accelerates in response to climate change, coastal wetland resources could be lost in areas that lack space for landward migration. Migration corridors are particularly important in highly urbanized estuaries where, due to low‐lying coastal development, there is not space for wetlands to move and adapt to sea level rise. Future‐focused landscape conservation plans that incorporate the protection of wetland migration corridors can increase the adaptive capacity of these valuable ecosystems and simultaneously decrease the vulnerability of coastal human communities to the harmful effects of rising seas.

Gulf of Mexico coast↗

Estuarine fish communities respond to climate variability over both river and ocean basins

Estuaries are dynamic environments at the land–sea interface that are strongly affected by interannual climate variability. Ocean–atmosphere processes propagate into estuaries from the sea, and atmospheric processes over land propagate into estuaries from watersheds. We examined the effects of these two separate climate-driven processes on pelagic and demersal fish community structure along the salinity gradient in the San Francisco Estuary, California, USA. A 33-year data set (1980–2012) on pelagic and demersal fishes spanning the freshwater to marine regions of the estuary suggested the existence of five estuarine salinity fish guilds: limnetic (salinity = 0–1), oligohaline (salinity = 1–12), mesohaline (salinity = 6–19), polyhaline (salinity = 19–28), and euhaline (salinity = 29–32). Climatic effects propagating from the adjacent Pacific Ocean, indexed by the North Pacific Gyre Oscillation (NPGO), affected demersal and pelagic fish community structure in the euhaline and polyhaline guilds. Climatic effects propagating over land, indexed as freshwater outflow from the watershed (OUT), affected demersal and pelagic fish community structure in the oligohaline, mesohaline, polyhaline, and euhaline guilds. The effects of OUT propagated further down the estuary salinity gradient than the effects of NPGO that propagated up the estuary salinity gradient, exemplifying the role of variable freshwater outflow as an important driver of biotic communities in river-dominated estuaries. These results illustrate how unique sources of climate variability interact to drive biotic communities and, therefore, that climate change is likely to be an important driver in shaping the future trajectory of biotic communities in estuaries and other transitional habitats.

California↗

Analysis of the Shallow Groundwater Flow System at Fire Island National Seashore, Suffolk County, New York

Fire Island National Seashore (FIIS) occupies 42 kilometers of the barrier island for which it is named that lies off the southern shore of Suffolk County, N.Y. Freshwater in the highly permeable, sandy aquifer underlying Fire Island is bounded laterally by marine surface waters and at depth by saline groundwater. Interspersed throughout FIIS are 17 pre-existing residential communities that in summer months greatly increase in population through the arrival of summer residents and vacationers; in addition, the National Park Service (NPS) has established several facilities on the island to accommodate visitors to FIIS. The 2.2 million people estimated by the NPS to visit Fire Island annually impact groundwater quality through the release of waste-derived contaminants, such as nutrients, pathogens, and organic compounds, into the environment. Waste-contaminated groundwater can move through the aquifer and threaten the ecological health of the adjacent back-barrier estuaries to which much of the groundwater ultimately discharges. In 2004, the U.S. Geological Survey (USGS), in cooperation with the NPS, began a 3-year investigation to (1) collect groundwater levels and water-quality (nutrient) samples, (2) develop a three-dimensional model of the shallow (water-table) aquifer system and adjacent marine surface waters, and (3) calculate nitrogen loads in simulated groundwater discharges from the aquifer to back-barrier estuaries and the ocean. The hydrogeology of the shallow aquifer system was characterized from the results of exploratory drilling, geophysical surveying, water-level monitoring, and water-quality sampling. The investigation focused on four areas-the communities of Kismet and Robbins Rest, the NPS Visitor Center at Watch Hill, and the undeveloped Otis Pike Fire Island High Dune Wilderness. Thirty-five observation wells were installed within FIIS to characterize subsurface hydrogeology and establish a water-table monitoring network in the four study areas. A variable-density model of the shallow aquifer system and adjacent marine surface waters was developed to simulate groundwater flow patterns and rates. Nitrogen loads from the shallow aquifer system were calculated from representative total nitrogen (TN) concentrations and simulated groundwater discharges to back-barrier estuaries and the ocean. The model simulates groundwater directions, velocities, and discharge rates under 2005 mean annual conditions. Groundwater budgets were developed for recharge areas of similar land use that contribute freshwater to back-barrier estuaries, the ocean, and subsea-discharge zones. Total freshwater discharge from the shallow aquifer system is about 43,500 cubic meters per day (m3/d) (79.8 percent) to back-barrier estuaries and about 10,200 m3/d (18.7 percent) to the ocean; about 836 m3/d (1.5 percent) may exit the system as subsea underflow. The total contribution of fresh groundwater to shoreline discharge zones amounts to about 53,700 m3/d (98.5 percent). The median age of freshwater discharged to back-barrier estuaries and the ocean was 3.4 years, and the 95th-percentile age was 20 years. The TN concentrations and loads under 2005 mean annual conditions for areas that contribute fresh groundwater to back-barrier estuaries and the ocean were calculated for the principal land uses on Fire Island. The overall TN load from the shallow aquifer system to shoreline discharge zones is about 16,200 kilograms per year (kg/yr) (82.2 percent) to back-barrier estuaries and about 3,500 kg/yr (17.8 percent) to the ocean. The overall TN load to marine surface waters amounts to about 19,700 kg/yr-roughly 6 percent of the annual TN load from shallow groundwater entering the South Shore Estuary Reserve (SSER) from the Suffolk County mainland, which is about 345,000 kg/yr. In contrast to the TN load from shallow groundwater for the SSER watershed, which annually yields about 353 kilograms per square kilometer (kg/km2), the overall TN loa

Scientific Investigations Report↗

Coastal habitats of the Elwha River, Washington- Biological and physical patterns and processes prior to dam removal

This report includes chapters that summarize the results of multidisciplinary studies to quantify and characterize the current (2011) status and baseline conditions of the lower Elwha River, its estuary, and the adjacent nearshore ecosystems prior to the historic removal of two long-standing dams that have strongly influenced river, estuary, and nearshore conditions. The studies were conducted as part of the U.S. Geological Survey Multi-disciplinary Coastal Habitats in Puget Sound (MD-CHIPS) project. Chapter 1 is the introductory chapter that provides background and a historical context for the Elwha River dam removal and ecosystem restoration project. In chapter 2, the volume and timing of sediment delivery to the estuary and nearshore are discussed, providing an overview of the sediment stored in the two reservoirs and the expected erosion mechanics of the reservoir sediment deposits after removal of the dams. Chapter 3 describes the geological background of the Olympic Peninsula and the geomorphology of the Elwha River and nearshore. Chapter 4 details a series of hydrological data collected by the MD-CHIPS Elwha project. These include groundwater monitoring, surface water-groundwater interactions in the estuary, an estimated surface-water budget to the estuary, and a series of temperature and salinity measurements. Chapter 5 details the work that has been completed in the nearshore, including the measurement of waves, tides, and currents; the development of a numerical hydrodynamic model; and a description of the freshwater plume entering the Strait of Juan de Fuca. Chapter 6 includes a characterization of the nearshore benthic substrate developed using sonar, which formed a habitat template used to design scuba surveys of the benthic biological communities. Chapter 7 describes the ecological studies conducted in the lower river and estuary and includes characterization of juvenile salmon diets and seasonal estuary utilization patterns using otolith analysis to determine habitat specific and hatchery compared with wild patterns in juvenile Chinook salmon, assessment of benthic and terrestrial macroinvertebrate communities, and seasonal patterns of water nutrients. In Chapter 8, the vegetation communities of the eastern estuary are characterized by mapped vegetation cover types and samples collected for vegetation composition and diversity. Chapter 9 summarizes the existing conditions of the study area as detailed in this report and describes some of the possible outcomes of river restoration on the coastal ecosystems of the Elwha River. Together, these different scientific perspectives form a basis for understanding the Elwha River ecosystem, an environment that has and will undergo substantial change. A century of change began with the start of dam construction in 1910; additional major change will result from dam removal scheduled to begin in September 2011. This report provides a scientific snapshot of the lower Elwha River, its estuary, and adjacent nearshore ecosystems prior to dam removal that can be used to evaluate the responses and dynamics of various system components following dam removal.

Scientific Investigations Report↗