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At least 631 records · Page 35Linked to original sources

USGS2004

Identification of larval Pacific lampreys (Lampetra tridentata), river lampreys (L. ayresi), and western brook lampreys (L. richardsoni) and thermal requirements of early life history stages of lampreys. Annual report 2002-2003

Two fundamental aspects of lamprey biology were examined to provide tools for population assessment and determination of critical habitat needs of Columbia River Basin (CRB) lampreys (the Pacific lamprey, Lampetra tridentata, and the western brook lamprey, L. richardsoni). We evaluated the usefulness of current diagnostic characteristics for identification of larval lampreys (i.e., pigment patterns) and collected material for development of meristic and morphometric descriptions of early life stage CRB lampreys, and we determined the effects of temperature on survival and development of early life stage CRB lampreys. Thirty-one larval lampreys were collected from locations throughout the CRB and transported to the Columbia River Research Laboratory. Lampreys were sampled at six-week intervals at which time they were identified to the species level based on current diagnostic characteristics. Sampling was repeated until lampreys metamorphosed, at which time species identification was validated based on dentition, or until they died, at which time they were preserved for genetic examination. These lampreys were sampled 30 times with two individuals metamorphosing, both of which were consistently identified, and subsequently validated, as Pacific lampreys. Of the remaining lampreys, only one was inconsistently identified (Pacific lamprey in 83% of the sampling events and western brook lamprey in 17% of the sampling events). These data suggest that pigmentation patterns do not change appreciably through time. In 2001 and 2002 we artificially spawned Pacific and western brook lampreys in the laboratory to provide material for meristic and morphometric descriptions. We collected, digitized, preserved, and measured the mean chorion diameter of Pacific and western brook lamprey embryos. Embryos ranged in development from 1 d post fertilization to just prior to hatch, and were incubated at 14 C. Mean chorion diameter was greater and more variable for Pacific lampreys (mean {+-} SD; 1.468 {+-} 0.107 mm, N = 320) than for western brook lampreys (1.237 {+-} 0.064 mm, N = 280). An unpaired t-test showed that the difference in mean chorion diameter between species was highly significant (t = 32.788, df = 528.62, P < 0.0001). For larvae, we collected, digitized, and preserved 156 individuals from each species. Eight homologous landmarks defining a two-cell truss network with two appended triangles were selected for morphometric analyses and species discrimination. A full model discriminant analysis correctly classified 92% of the Pacific lampreys and 93% of the western brook lampreys in a classification data set. When applied to a test data set, the classification functions correctly classified 91% of the Pacific lampreys and 85% of the western brook lampreys. A backward elimination discriminant analysis removed four variables from the full model, and the reduced model correctly classified 91% of the Pacific lampreys and 93% of the western brook lampreys in a classification data set. The reduced model classification functions correctly classified 91% of the Pacific lampreys and 85% of the western brook lampreys in a test data set. In 2001 and 2002 Pacific and western brook lampreys were artificially spawned and resulting progeny were reared in the laboratory at 10 C, 14 C, 18 C, and 22 C. The estimated temperature for zero development was 4.85 C for Pacific and 4.97 C for western brook lampreys. Survival was greatest at 18 C followed by 14 C, 10 C, and 22 C, with significant differences observed between 22 C and other temperatures. Overall survival was significantly greater for western brook than for Pacific lampreys, although the difference in proportion of individuals surviving was only 0.02. Survival to hatch was significantly greater than survival to the larval stage with a difference of only 0.03. The proportion of individuals exhibiting abnormalities at the larval stage was greatest at 22 C followed by 18 C, 10 C, and 14 C, with significant differences observed between 22 C and other temperatures.

Report↗

USGS2019

Florida Coastal Mapping Program—Overview and 2018 workshop report

The Florida Coastal Mapping Program is a nascent but highly relevant program that has the potential to greatly enhance the “Blue Economy” of Florida by coordinating and facilitating sea-floor mapping efforts and aligning partner and stakeholder activities for increased efficiency and cost reduction. Sustained acquisition of modern coastal mapping information for Florida may improve management of resources and reduce costs by eliminating redundancy. Economic growth could be aided by improved data to support emerging sectors such as aquaculture and renewable energy. The present focus of the Florida Coastal Mapping Program is on modern, high-resolution bathymetric and coastal topobathymetric data, which can be immediately used to update navigational charts and identify navigation hazards, provide fundamental baseline data for scientific research, and provide information for use by emergency managers and responders. Derivative products include identifying sand resources for beach nourishment, creating vastly improved models for coastal erosion and flooding, identifying coastal springs, and creating benthic habitat maps. The uses and applications of the data generated could grow over time. The process of creating a steering committee and technical team, conducting an inventory and gaps analysis, soliciting feedback from the stakeholder and partner communities, and developing a prioritization process has provided a framework on which a successful program can develop a sustainable funding strategy that may be an investment the citizens of Florida could benefit from for decades.

Florida↗

USGS2024

Realizing the potential of eDNA biodiversity monitoring tools in the marine environment with application to offshore renewable energy

The U.S. Geological Survey (USGS) researches the biological diversity and distribution of species to support management, conservation, and resource use decisions. USGS scientists advance detection and monitoring technologies to assess changes in fish and wildlife populations, biodiversity, and the health of ecosystems. The United States is planning to install 30 gigawatts of offshore marine and wind energy by 2030. However, the effects on fish and wildlife and their habitats are not well understood. The USGS is a leader in the field of eDNA technologies and has helped advance robotic eDNA samplers, has extensive experience working in the offshore environment, and has developed novel and actionable statistical methods and standards for eDNA monitoring applications. This fact sheet presents key eDNA research and development advances needed for realizing the potential of eDNA biodiversity monitoring tools in the marine environment and applying eDNA monitoring to offshore renewable energy development. New and cost-effective tools for measuring changes in biodiversity in response to offshore renewable energy development can help to inform natural resource management and project planning and permitting decisions.

Fact Sheet↗

USGS1993

Applications of research from the U.S. Geological Survey program, assessment of regional earthquake hazards and risk along the Wasatch Front, Utah

INTERACTIVE WORKSHOPS: ESSENTIAL ELEMENTS OF THE EARTHQUAKE HAZARDS RESEARCH AND REDUCTION PROGRAM IN THE WASATCH FRONT, UTAH: Interactive workshops provided the forum and stimulus necessary to foster collaboration among the participants in the multidisciplinary, 5-yr program of earthquake hazards reduction in the Wasatch Front, Utah. The workshop process validated well-documented social science theories on the importance of interpersonal interaction, including interaction between researchers and users of research to increase the probability that research will be relevant to the user's needs and, therefore, more readily used. REDUCING EARTHQUAKE HAZARDS IN UTAH: THE CRUCIAL CONNECTION BETWEEN RESEARCHERS AND PRACTITIONERS: Complex scientific and engineering studies must be translated for and transferred to nontechnical personnel for use in reducing earthquake hazards in Utah. The three elements needed for effective translation, likelihood of occurrence, location, and severity of potential hazards, and the three elements needed for effective transfer, delivery, assistance, and encouragement, are described and illustrated for Utah. The importance of evaluating and revising earthquake hazard reduction programs and their components is emphasized. More than 30 evaluations of various natural hazard reduction programs and techniques are introduced. This report was prepared for research managers, funding sources, and evaluators of the Utah earthquake hazard reduction program who are concerned about effectiveness. An overview of the Utah program is provided for those researchers, engineers, planners, and decisionmakers, both public and private, who are committed to reducing human casualties, property damage, and interruptions of socioeconomic systems. PUBLIC PERCEPTIONS OF THE IMPLEMENTATION OF EARTHQUAKE MITIGATION POLICIES ALONG THE WASATCH FRONT IN UTAH: The earthquake hazard potential along the Wasatch Front in Utah has been well defined by a number of scientific and engineering studies. Translated earthquake hazard maps have also been developed to identify areas that are particularly vulnerable to various causes of damage such as ground shaking, surface rupturing, and liquefaction. The implementation of earthquake hazard reduction plans are now under way in various communities in Utah. The results of a survey presented in this paper indicate that technical public officials (planners and building officials) have an understanding of the earthquake hazards and how to mitigate the risks. Although the survey shows that the general public has a slightly lower concern about the potential for economic losses, they recognize the potential problems and can support a number of earthquake mitigation measures. The study suggests that many community groups along the Wasatch Front, including volunteer groups, business groups, and elected and appointed officials, are ready for action-oriented educational programs. These programs could lead to a significant reduction in the risks associated with earthquake hazards. A DATA BASE DESIGNED FOR URBAN SEISMIC HAZARDS STUDIES: A computerized data base has been designed for use in urban seismic hazards studies conducted by the U.S. Geological Survey. The design includes file structures for 16 linked data sets, which contain geological, geophysical, and seismological data used in preparing relative ground response maps of large urban areas. The data base is organized along relational data base principles. A prototype urban hazards data base has been created for evaluation in two urban areas currently under investigation: the Wasatch Front region of Utah and the Puget Sound area of Washington. The initial implementation of the urban hazards data base was accomplished on a microcomputer using dBASE III Plus software and transferred to minicomputers and a work station. A MAPPING OF GROUND-SHAKING INTENSITIES FOR SALT LAKE COUNTY, UTAH: This paper documents the development of maps showing a

Professional Paper↗

USGS2015

Community for Data Integration 2013 Annual Report

The U.S. Geological Survey (USGS) conducts earth science to help address complex issues affecting society and the environment. In 2006, the USGS held the first Scientific Information Management Workshop to bring together staff from across the organization to discuss the data and information management issues affecting the integration and delivery of earth science research and investigate the use of “communities of practice” as mechanisms to share expertise about these issues. Out of this effort emerged the Council for Data Integration, which was conceived as an official organizational function that would help guide data integration activities and formalize communities of practice into working groups. However by 2009, it became apparent that many members of the council had an interest in developing data integration solutions and sharing expertise in a less formal grassroots perspective, thus transforming the “Council” into a “Community” for Data Integration (CDI). Today, the CDI represents a dynamic community of practice focused on advancing science data and information management and integration capabilities across the USGS and the CDI community. The CDI fosters an environment for collaboration and sharing by bringing together expertise from external partners and representatives across USGS who are involved in research, data management, and information technology. Membership is voluntary and open to USGS employees and other individuals and organizations willing to contribute to the community (if interested, contact cdi@usgs.gov). The purpose of the CDI is to advance understanding of Earth systems through enhanced use of data and information including associated tools and techniques provide a forum for people doing work with data integration to come together to share ideas as well as learn new skills and techniques, and grow overall USGS capabilities with data and information by increasing visibility of the work of many people throughout the USGS and the CDI community. To achieve these goals, the CDI operates within four applied areas: monthly forums, annual workshop/webinar series, working groups, and projects. The monthly forums, also known as the Opportunity/Challenge of the Month, provide an open dialogue to share and learn about data integration efforts or to present problems that invite the Community to offer solutions, advice, and support. Since 2010, the CDI has also sponsored annual workshops/webinar series to encourage the exchange of ideas, sharing of activities, presentations of current projects, and networking among members. Stemming from common interests, the working groups are focused on efforts to address data management and technical 2 challenges, including the development of standards and tools, improving interoperability and information infrastructure, and data preservation within USGS and its partners. The growing support for the activities of the working groups led to the CDI’s first formal request for proposals (RFP) process in 2013 to fund projects that produced tangible products. Today the CDI continues to hold an annual RFP that create data management tools and practices, collaboration tools, and training in support of data integration and delivery.

Open-File Report↗

USGS2020

Aquatic invasive species in the Chesapeake Bay drainage—Research-based needs and priorities of U.S. Geological Survey partners and collaborators

Executive Summary The U.S. Geological Survey (USGS) is revising the Chesapeake Bay-based science plan to align it with recent U.S. Department of Interior and USGS science priorities that include, as stated in the plan, providing “an integrated understanding of the factors affecting fish habitat, fish health, and landscape conditions” in Chesapeake Bay and its watershed. A report of partner agencies’ needs and priorities related to aquatic invasive species (AIS) science was identified as an informational gap; a report would help to further development of the science program related to aquatic animal health and habitat. This objective was addressed through review of pertinent documentation and conversations with representatives of State, Federal, and regional agencies with vested interests in AIS management in Chesapeake Bay and the Chesapeake Bay drainage area, and this document was produced to summarize the related findings. All agencies and organizations (13) reported that AIS are of general concern, with most stakeholder groups reporting AIS-related issues to be of high priority, including invasive fishes and invertebrates, invasive plants, and microbes including aquatic animal pathogens. Invasive fishes are of great concern to all partner agencies. Channa argus (northern snakehead) and Ictalurus furcatus (blue catfish) are high priority and represent the two most named AIS of concern for these agencies. Nine of 10 stakeholder groups listed northern snakehead as a high priority species, and 6 listed blue catfish as a high priority species as well. Pylodictis olivaris (flathead catfish), invasive crayfish species , and dressenid mussels were also prioritized by multiple partner groups, each receiving specific mention by at least 3 of the 10 stakeholder groups in discussions or documents. Invasive carp, such as Hypophthalmichthys molatrix (silver carp), also received mention by multiple agencies (3 of the 10 stakeholder groups) because these fish represent priority AIS in nearby watersheds and a threat for introduction and dissemination within the Chesapeake Bay watershed from these neighboring regions. Invasive plants are among priority species, and Hydrilla verticillata (hydrilla) topped the list. Hydrilla was reported as a priority species by 5 of the stakeholder groups queried. Trapa natans and T. bispinosa (water chestnut), Phragmites australis (common reed), and Lythrum salicaria (purple loosestrife) were also among the aquatic invasive plants that were prioritized by multiple partner agencies. Multiple stakeholder groups (5 of the 10 groups) also considered Didymosphenia geminata (didymo) and various aquatic animal pathogens among their priority AIS for management considerations. Science needs that were recurrently indicated by stakeholders to support management of invasive species include Technology to enhance biosurveillance capability, such as reliable environmental DNA based detection methodology; Risk assessment modeling to forewarn of and prioritize AIS-related threats; Increased information and intervention methods related to vectors and pathways of AIS introductions; Increased information about the biology and life history of AIS, including information related to trophic interactions, health and disease, and distribution and abundance; and Potential applications of mitigation strategies, including genetically based biocontrol mechanisms. Potential next steps to address the science needs include Development of biosurveillance and risk assessment tools for identification of AIS in proactive management; Development of proactive management techniques to prevent AIS introductions through recognized vectors and pathways; Development of interagency biosurveillance programs to best utilize personnel, funds, and other resources among interested agencies and organizations; Investigations to address life history, consequences, and movement/dissemination of top priority invasive species in the region; Investigations to determine the potential for novel mitigation technologies, such as the application of synthetic biological (genetic) control methods; and Investigations with focus on emerging and high priority AIS in the region, including fishes (blue catfish, flathead catfish, northern snakehead), invertebrates (invasive crayfish and mollusks) and plants (hydrilla, water chestnut, phragmites).

Virginia, Maryland, Delaware, West Virginia, Penns↗

USGS2014

Validation of the SCEC broadband platform V14.3 simulation methods using pseudo spectral acceleration data

This paper summarizes the evaluation of ground motion simulation methods implemented on the SCEC Broadband Platform (BBP), version 14.3 (as of March 2014). A seven-member panel, the authorship of this article, was formed to evaluate those methods for the prediction of pseudo-‐spectral accelerations (PSAs) of ground motion. The panel’s mandate was to evaluate the methods using tools developed through the validation exercise (Goulet et al. ,2014), and to define validation metrics for the assessment of the methods’ performance. This paper summarizes the evaluation process and conclusions from the panel. The five broadband, finite-source simulation methods on the BBP include two deterministic approaches herein referred to as CSM (Anderson, 2014) and UCSB (Crempien and Archuleta, 2014); a band-‐limited stochastic white noise method called EXSIM (Atkinson and Assatourians, 2014); and two hybrid approaches, referred to as G&P (Graves and Pitarka, 2014) and SDSU (Olsen and Takedatsu, 2014), which utilize a deterministic Green’s function approach for periods longer than 1 second and stochastic methods for periods shorter than 1 second. Two acceptance tests were defined to validate the broadband finite‐source ground methods (Goulet et al., 2014). Part A compared observed and simulated PSAs for periods from 0.01 to 10 seconds for 12 moderate to large earthquakes located in California, Japan, and the eastern US. Part B compared the median simulated PSAs to published NGA-‐West1 (Abrahamson and Silva, 2008; Boore and Atkinson, 2008; Campbell and Bozorgnia, 2008; and Chiou and Youngs, 2008) ground motion prediction equations (GMPEs) for specific magnitude and distance cases using a pass-‐fail criteria based on a defined acceptable range around the spectral shape of the GMPEs. For the initial Part A and Part B validation exercises during the summer of 2013, the software for the five methods was locked in at version 13.6 (see Maechling et al., 2014). In the spring of 2014, additional moderate events were considered for the Part A validation, and additional magnitude and distance cases were considered for the Part B validation, for the software locked in at version 14.3. Several of the simulation procedures, specifically UCSB and SDSU, changed significantly between versions 13.6 and 14.3. The CSM code was not submitted in time for the v14.3 evaluation and its detailed performance is not addressed in this paper. As described in Goulet et al. (2014) and Maechling et al. (2014), the BBP generates a variety of products, including three-‐component acceleration time series. A series of post-‐processing codes were developed to provide individual component PSAs and average median horizontal-‐component PSA (referred to as RotD50; Boore, 2010) for oscillator periods ranging from 0.01 to 10 seconds, as well as median PSA values computed using the NGA-‐West 1 GMPEs. The BBP was also configured to provide statistical analysis of simulation results relative to recordings (Part A) and GMPEs (Part B) as described further in sections below. As part of our evaluation, we reviewed documentation provided by each of the developers, which included the technical basis behind the methods and the developer’s self-‐assessments regarding the extrapolation capabilities (in terms of magnitude and distance ranges) of their methods. Two workshops were held in which methods and results were presented, and the panel was given the opportunity to question the developers and to have detailed technical discussions. A SCEC report (Dreger et al., 2013) describes the results of this review for BBP version 13.6. This paper summarizes that work and presents results for the more recent BBP 14.3 validation.

Seismological Research Letters↗

USGS1997

Taking the Earth's pulse

During the past 35 years, scientists have developed a vast network of seismometers that record earthquakes, volcanic eruptions, and nuclear explosions throughout the world. Seismographic data support disaster response, scientific research, and global security. With this network, the United States maintains world leadership in monitoring the greatest natural and technological events that threaten our planet's population.

Fact Sheet↗

USGS2009

Understanding the Habitat Needs of the Declining Western Yellow-Billed Cuckoo

The western yellow-billed cuckoo, once common along the streams and rivers of the American West, is now a candidate for protection under the Endangered Species Act. Most of the remaining breeding pairs are found in Arizona, California, and New Mexico. Research to understand the cuckoos' habitat needs by U.S. Geological Survey (USGS) and Northern Arizona University scientists has shown that cuckoos in Arizona prefer breeding habitat dominated by native tree species, especially cottonwood-willow habitat bordered by mesquite bosque habitat. This research also revealed that the size of habitat patches matters - breeding cuckoos were found only in large, continuous areas of riparian habitat. These findings and the development of spatially explicit habitat models by USGS scientists will help resource managers conserve and manage riparian habitats needed to ensure the survival of the western yellow-billed cuckoo.

Fact Sheet↗

USGS2012

Mapping grasslands suitable for cellulosic biofuels in the Greater Platte River Basin, United States

Biofuels are an important component in the development of alternative energy supplies, which is needed to achieve national energy independence and security in the United States. The most common biofuel product today in the United States is corn-based ethanol; however, its development is limited because of concerns about global food shortages, livestock and food price increases, and water demand increases for irrigation and ethanol production. Corn-based ethanol also potentially contributes to soil erosion, and pesticides and fertilizers affect water quality. Studies indicate that future potential production of cellulosic ethanol is likely to be much greater than grain- or starch-based ethanol. As a result, economics and policy incentives could, in the near future, encourage expansion of cellulosic biofuels production from grasses, forest woody biomass, and agricultural and municipal wastes. If production expands, cultivation of cellulosic feedstock crops, such as switchgrass ( Panicum virgatum L. ) and miscanthus ( Miscanthus species ), is expected to increase dramatically. The main objective of this study is to identify grasslands in the Great Plains that are potentially suitable for cellulosic feedstock (such as switchgrass) production. Producing ethanol from noncropland holdings (such as grassland) will minimize the effects of biofuel developments on global food supplies. Our pilot study area is the Greater Platte River Basin, which includes a broad range of plant productivity from semiarid grasslands in the west to the fertile corn belt in the east. The Greater Platte River Basin was the subject of related U.S. Geological Survey (USGS) integrated research projects.

Colorado;Nebraska;South Dakota;Wyoming↗

USGS1977

Preliminary foraminiferal biostratigraphy and correlation of selected stratigraphic sections and wells in the Gulf of Alaska Tertiary province

As part of ongoing research by the U.S. Geological Survey on the geology and resource potential of the Gulf of Alaska Tertiary Province, a vast amount of data has been accumulated over the past 25 years on the lithology and paleontology of bedded rocks in the province. This report brings together available information on the occurrence, age, and paleoecologic, significance of benthonic foraminifers and presents correlations based on these data from 16 measured stratigraphic sections and 12 exploratory wells. Relatively few reports employing modern taxonomic methods developed during the past 40 years have been published on foraminiferal biostratigraphy of the Gulf of Alaska. Reports by Cushman (1941), Cushman and Todd (1947), Tappan (1951), Todd (1953), Loeblich and Tappan (1953), Todd (1957), Rau (1963), Cooper (1964), and Todd and Low (1967) are primarily concerned with taxonomy, ecology and paleoecology, or the geologic age of assemblages from isolated outcrops. Almost no data have been published on foraminiferal correlations of measured sections and wells. The paucity of such information has prompted the synthesis and interpretation of foraminiferal data that provide the framework of correlation presented in this report. Some of the benthonic provincial stages that have been assigned to lower and middle parts of the Tertiary of other west coast areas are recognized for the Gulf of Alaska. Divisions for the upper part of the Tertiary are broad, but specific faunal occurrences are recognized as possible aids to correlations. Regional correlations presented in this report are necessarily broad and may be modified and redefined when new data become available from the current round of exploratory drilling for petroleum in the offshore part of the Gulf of Alaska Tertiary Province. It is anticipated that this report will be of particular interest to readers associated with petroleum exploration. As a convenience to them and because most foraminiferal data from wells, including those of this report, are from cuttings, all checklists are arranged to show plainly the highest occurrence of each species within each measured section and well. Furthermore, in conformity with these data, all sections and wells are described from the top to bottom. The text describes the stratigraphic and paleoecologic significance of foraminifers by biostratigraphic units and by individual sections and wells.

Alaska↗

USGS2020

Ungulate migrations of the western United States, Volume 1

Across the western United States, many ungulate herds must migrate seasonally to access resources and avoid harsh winter conditions. Because these migration paths cover vast landscapes (in other words migration distances up to 150 miles [241 kilometers]), they are increasingly threatened by roads, fencing, subdivisions, and other development. Over the last decade, many new tracking studies have been conducted on migratory herds, and analytical methods have been developed that allow for population-level corridors and stopovers to be mapped and prioritized. In 2018, the U.S. Geological Survey assembled a Corridor Mapping Team to provide technical assistance to western states working to map bison, elk, moose, mule deer, and pronghorn migrations using existing Global Positioning System data. Led by the Wyoming Cooperative Fish and Wildlife Research Unit, the team consists of federal scientists, university researchers, and biologists and analysts from participating state agencies. In its first year, the team has worked to develop standardized analytical and computational methods and a workflow applicable to datasets typically collected by state agencies. In 2019, the team completed analyses necessary to map corridors, stopovers, routes and winter ranges in Arizona, Idaho, Nevada, Utah, and Wyoming. A total of 26 corridors, 16 migration routes, 25 stopovers, and 9 winter ranges were mapped across these states and are included in this report. This report and associated data release provide the means for the habitats required for migration to be taken into account by state and federal transportation officials, land and wildlife managers, planners, and other conservationists working to maintain big-game migration in the western states.

Scientific Investigations Report↗

USGS1990

Field manual for the investigation of fish kills

Preface Fish kills are graphic evidence of serious problems in a lake or stream. If the kill is related to the presence of toxic chemicals, there may be human health concerns, in addition to the obvious damage to the ecosystem and the fisheries resources. Depending on the cause of a fish kill, legal and economic ramifications may be involved. If the kill is cause by human or corporate actions, litigation is likely to follow, with possible court-awarded damages and assessed costs for cleanup and restoration. Federal and State agencies have expressed the need for a compendium of known and accepted methods and techniques that should be followed by anyone investigation a fish kill. This manual is an attempt to fill that need. It addresses the many facets involved in a fish kill investigation and provides instruction, guidance, examples, and sample forms that can be used. The U.S. Fish and Wildlife Service is pleased to provide this manual to help fisheries biologists and others prepare for a fish kill investigation. Research and Development (Region 8) has cooperated with the Division of Environmental Contaminants in Fish and Wildlife Enhancement to provide expertise and funds. We hope that the manual proves to be useful for interpreting evidence at the site of a fish kill, and corrective actions, and preparing for appearance as a court witness.

Resource Publication↗

USGS2022

Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database

To advance national efforts for the detection and biosurveillance of aquatic invasive species (AIS), we employed a community consensus process to enable the incorporation of environmental DNA (eDNA) detection data into the U.S. Geological Survey’s (USGS) Nonindigenous Aquatic Species (NAS) database (https://nas.er.usgs.gov/eDNA/). Our goal was to identify minimum standards and best practices for the verification of eDNA data by working closely with AIS eDNA community practitioners and natural resource managers across government, private and academic sectors. To better inform management decisions, verified AIS eDNA data will be displayed on a separate mapping layer alongside visual sighting data with the inclusion of additional information on the eDNA methods employed to collect and produce the data. To allow for eDNA data display, we produced consensus derived online documents including a submission application and data submission template and are developing a guidance document for detailing the eDNA data submission process. We also developed a communication plan including a mechanism for reporting detections to appropriate managers for consideration prior to display. The products of these efforts are an application and data submission process that will be used in the new environmental DNA data layer on the Nonindigenous Aquatic Species (NAS) database. Herein, we detail how we engaged the eDNA community for consensus of our standards, share lessons learned from the process, and describe the benefits of such an approach at instilling confidence among the research and decision-maker community.

Management of Biological Invasions↗

USGS1997

Geospatial Technology Strategic Plan 1997-2000

Executive Summary -- Geospatial technology applications have been identified in many U.S. Geological Survey Biological Resources Division (BRD) proposals for grants awarded through internal and partnership programs. Because geospatial data and tools have become more sophisticated, accessible, and easy to use, BRD scientists frequently are using these tools and capabilities to enhance a broad spectrum of research activities. Bruce Babbitt, Secretary of the Interior, has acknowledged--and lauded--the important role of geospatial technology in natural resources management. In his keynote address to more than 5,500 people representing 87 countries at the Environmental Systems Research Institute Annual Conference (May 21, 1996), Secretary Babbitt stated, '. . .GIS [geographic information systems], if properly used, can provide a lot more than sets of data. Used effectively, it can help stakeholders to bring consensus out of conflict. And it can, by providing information, empower the participants to find new solutions to their problems.' This Geospatial Technology Strategic Plan addresses the use and application of geographic information systems, remote sensing, satellite positioning systems, image processing, and telemetry; describes methods of meeting national plans relating to geospatial data development, management, and serving; and provides guidance for sharing expertise and information. Goals are identified along with guidelines that focus on data sharing, training, and technology transfer. To measure success, critical performance indicators are included. The ability of the BRD to use and apply geospatial technology across all disciplines will greatly depend upon its success in transferring the technology to field biologists and researchers. The Geospatial Technology Strategic Planning Development Team coordinated and produced this document in the spirit of this premise. Individual Center and Program managers have the responsibility to implement the Strategic Plan by working within the policy and guidelines stated herein.

Information and Technology Report↗

USGS2001

Abstracts from "Coastal Marsh Dieback in the Northern Gulf of Mexico: Extent, Causes, Consequences, and Remedies

In the spring of 2000, scientists discovered a new and unprecedented loss of salt marsh vegetation in coastal Louisiana and other areas along the northern coast of the Gulf of Mexico. This dieback of salt marsh vegetation, sometimes called the brown marsh phenomenon', primarily involved the rapid browning and dieback of smooth cordgrass (Spanina alterniflora). Coastal Louisiana has already undergone huge, historical losses of coastal marsh due to both human-induced and natural factors, and the current overall rate of wetland loss (25-35 sq mi 65-91 SQ KM each year) stands to threaten Louisiana's coastal ecosystem, infrastructure, and economy. On January 11-12, 2001, individuals from Federal and State agencies, universities, and the private sector met at the conference 'Coastal Marsh Dieback in the Northern Gulf of Mexico: Extent, Causes, Consequences, and Remedies' to discuss and share information shout the marsh dieback. Presentations discussed trends in the progress of dieback during the summer of 2000 and in environmental conditions occurring at field study sites, possible causes including drought and Mississippi low flow' conditions, changes in soil conditions (salinity, the bioavailability of metals, pathogens, etc.), the potential for wetland loss that could occur if above and below normality occurs and is sustained over an extended period, advanced techniques for tracking the dieback via aerial photography and remote sensing, linkages of marsh hydrology to the dieback, and mechanisms of modeling dieback and recovery. In addition, presentations were made regarding development of a web site to facilitate information sharing and progress in preparation for requests for proposals based on an emergency appropriation by the U.S. Congress. All findings tended to support the idea that the dieback constituted a continuing environmental emergency and research and natural resource management efforts should be expended accordingly.

Information and Technology Report↗

USGS2000

Field guide to malformations of frogs and toads: with radiographic interpretations

In 1995, students found numerous malformed frogs on a field trip to a Minnesota pond. Since that time, reports of malformed frogs have increased dramatically. Malformed frogs have now been reported in 44 states in 38 species of frogs, and 19 species of toads. Estimates as high as 60% of the newly metamorphosed frog populations have had malformations at some ponds (NARCAM, ’99). The wide geographic distribution of malformed frogs and the variety of malformations are a concern to resource managers, research scientists and public health officials. The potential for malformations to serve as a signal of ecosystem disruption, and the affect this potential disruption might have on other organisms that share those ecosystems, has not been resolved. Malformations represent an error that occurred early in development. The event that caused the developmental error is temporally distant from the malformation we see in the fully developed animal. Knowledge of normal developmental principles is necessary to design thoughtful investigations that will define the events involved in abnormal development in wild frog populations. Development begins at the time an egg is fertilized and progresses by chemical communication between cells and cell layers. This communication is programmed through gene expression. Malformations represent primary errors in development, errors in chemical communication or translation of genetic information. Deformations arise later in development and usually result from the influence of mechanical factors (such as amputation) that alter shape or anatomy of a structure that has developed normally. The occurrence and the type of malformations are influenced by the type of error or insult as well as the timing of the error (the developmental stage at which the error occurred). The appearance of the malformation can therefore provide clues that suggest when the error may have occurred. If the malformation is an incomplete organ, such as an incomplete limb, the factor or insult acted during a susceptible period prior to organ completion. Although defining the anatomy of the malformed metamorphosed frog can give us an idea of the approximate window during which the developmental insult was initiated, and might even suggest the type of insult that may have occurred, the morphology of the malformation does not define the cause. To define causes and mechanisms of frog malformations we need to use well designed investigations that are different from traditional tests used in acute toxicity or disease pathogenicity studies. When investigating malformations in metamorphosed frogs, we are looking at the affect of exposure to an agent that occurred early in tadpole development. Therefore investigations to determine causes of malformations need to look at agents that are present in the tadpoles or their environments at these early developmental times. Laboratory experiments need to expose embryos and tadpoles to suspect agents at appropriate developmental stages and look at acute results, such as toxicity and death, as well as following the developmental process to completion to determine the impact of the agent on the developing tadpole and the fully developed frog. This means holding animals past metamorphic climax to assure that the anatomy and physiology of the adult have developed normally. As we look at field collections of abnormal frogs, we need to keep in mind that these collections reflect survivors only. We are looking at malformations that were not fatal to tadpoles. We cannot assume that because we do not collect other malformations, they did not exist. More work needs to be done on the developing tadpole, in the field and in the laboratory, to better elucidate the range, frequency, character and causes of anuran malformations.

Biological Science Report↗

USGS2015

Near-surface stratigraphy and morphology, Mississippi Inner Shelf, northern Gulf of Mexico

Over the past decade, the Mississippi Barrier Islands have been the focus of a comprehensive geologic investigation by the U.S. Geological Survey (USGS), in collaboration with the U.S. Army Corps of Engineers (USACE) and the National Park Service (NPS). The islands (Dauphin, Petite Bois, Horn, East Ship, West Ship, and Cat) are part of the Gulf Islands National Seashore (GUIS), and provide a diverse ecological habitat, protect the mainland from storm waves, and help maintain estuarine conditions within Mississippi Sound. Over the past century, the islands have been in a state of decline with respect to elevation and land-area loss. In 2005, the islands were severely impacted by Hurricane Katrina, which inundated them with a storm surge of 8 meters, causing severe shoreface erosion and widening breaches in Dauphin, West Ship, and Cat Islands. To evaluate the impact and fate of the islands, understanding their evolution and resiliency became a priority for the USGS under the Northern Gulf of Mexico Ecosystem Change and Hazard Susceptibility Project. The project formed the basis for collaboration with the USACE Mississippi Coastal Improvement Project, which is intended to restore portions of coastal Mississippi and GUIS affected by storm impact. Since then, many studies have contributed to our understanding of the islands’ morphology and nearshore stratigraphy. This report expands upon the nearshore component to provide a stratigraphic and morphologic assessment offshore of Petit Bois Island. In June 2013, as part of the MsCIP project, the USGS conducted a geophysical survey consisting of about 650 line-kilometers (km), encompassing an area of approximately 212 square kilometers (km 2 ). The survey area extended from 1 to 13 km offshore of Petite Bois Island. The geophysical investigation included interferometric swath bathymetry, sidescan sonar, and chirp subbottom profiling. The intent of the survey was to provide geologic information that would assist the USACE in developing a sediment sampling strategy for identifying deposits suitable for shoreline restoration operations. The data from the geophysical survey would also further our understanding of the geologic framework along the inner shelf. Numerous seafloor and subbottom features were identified. At the surface, shoals and shelf sand sheets of various sizes and orientations are the predominant morphology. In the subsurface, Holocene- and Pleistocene-age features include marine transgressive deposits infilling older fluvia distributary systems. These interpretations from the geophysical research were integrated with sediment cores collected by the USGS and USACE to provide textural and volumetric information.

Mississippi-Alabama shelf↗