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Benthic invertebrates and periphyton in the Elwha river basin: Current conditions and predicted response to dam removal

The impending removal of two dams on the Elwha River in Washington State offers a unique opportunity to study ecosystem restoration at a watershed scale. We examine how periphyton and benthic invertebrate assemblages vary across regulated and unregulated sections of the Elwha River and across different habitat types, and establish baseline data for tracking future changes following dam removal. We collected multiple years of data on physical habitat, water chemistry, periphyton, and benthic invertebrates from 52 sites on the Elwha River and a reference section on the Quinault River, a neighboring basin. We found that substrate in regulated river sections was coarser and less heterogeneous in size than in unregulated sections, and summer water temperature and specific conductivity higher. Periphyton biomass was also consistently higher in regulated than unregulated sections. Benthic invertebrate assemblage structure at sites above both dams was distinct from sites between and below the dams, due in large part to dominance of mayfly taxa compared to higher relative abundance of midges and non-insect taxa at downstream sites. Following dam removal, we anticipate that both periphyton and benthic invertebrate abundance and diversity will temporarily decrease between and below dams as a result of sediment released from behind the reservoirs. Over the long-term, increased floodplain heterogeneity and recolonization by anadromous fish will alter benthic invertebrate and periphyton assemblages via increases in niche diversity and inputs of marine-derived nutrients. The extended timeline predicted for Elwha River recovery and the complexities of forecasting ecological response highlights the need for more long-term assessments of dam removal and river restoration practices.

Northwest Science↗

Archive of digital chirp subbottom profile data collected during USGS cruise 10BIM04 offshore Cat Island, Mississippi, September 2010

In September of 2010, the U.S. Geological Survey (USGS), in cooperation with the U.S. Army Corps of Engineers (USACE), conducted a geophysical survey to investigate the geologic controls on barrier island framework of Cat Island, Miss., as part of a broader USGS study on Barrier Island Mapping (BIM). These surveys were funded through the Mississippi Coastal Improvements Program (MsCIP) and the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility Project as part of the Holocene Coastal Evolution of the Mississippi-Alabama Region Subtask. This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, GIS files, Field Activity Collection System (FACS) logs, and formal FGDC metadata. Gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Acronyms page for expansions of acronyms and abbreviations used in this report. The USGS Saint Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 10BIM04 tells us the data were collected in 2010 during the fourth field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity identification (ID). All chirp systems use a signal of continuously varying frequency; the EdgeTech SB-512i system used during this survey produces high-resolution, shallow-penetration (typically less than 50 milliseconds (ms)) profile images of sub-seafloor stratigraphy. The towfish contains a transducer that transmits and receives acoustic energy; it was housed within a float system (built at the SPCMSC), which allows the towfish to be towed at a constant depth of 1.07 meters (m) below the sea surface. As transmitted acoustic energy intersects density boundaries, such as the seafloor or sub-surface sediment layers, some energy is reflected back toward the transducer, received, and recorded by a Personal Computer (PC)-based seismic acquisition system. This process is repeated at regular time intervals (for example, 0.125 seconds (s)), and returned energy is recorded for a specific duration (for example, 50 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y rev. 0 format (Barry and others, 1975); the first 3,200 bytes of the card image header are in American Standard Code for Information Interchange (ASCII) format instead of Extended Binary Coded Decimal Interchange Code (EBCDIC) format. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2010). See the How To Download SEG Y Data page for download instructions. The printable profiles provided here are GIF images that were processed and gained using SU software, and they can be viewed from the Profiles page or from links located on the trackline maps; refer to the Software page for links to example SU processing scripts. The SEG Y files are available on the DVD version of this report or on the Web, downloadable via the USGS Coastal and Marine Geoscience Data System (http://cmgds.marine.usgs.gov). The data are also available for viewing using GeoMapApp (http://www.geomapapp.org) and Virtual Ocean (http://www.virtualocean.org) multi-platform open source software.

Mississippi↗

Progradational sequences in Miocene shoreline deposits, southeastern Caliente Range, California

An exceptionally well exposed marine-nonmarine transition in middle Miocene strata exists in the southeastern Caliente Range, California. About 50 individual progradational sequences form a succession that ranges in thickness from approximately 1000 m (where predominantly nonmarine) to more than 2500 m (where predominantly marine). Paleogreographic evidence in basalt flows near the top of the succession and in overlying fluvial deposists indicates that these middle Miocene strata were deposited across a north-northwest trending shoreline. A complete progradational sequence typically is several meters to a few tens of meters thick and includes strata that represent three intertonguing stratigraphic units. Individual sequences generally rest on a thin gravel deposit interpreted as a transgressive lag on an erosional surface. The gravel is overlain by structureless siltstone or fine-grained sandstone deposited at water depths where the rate of faunal mixing exceeded that of production of structures by physical processes. These rocks grade upward into bedded fine sandstone deposited closer to shore where physical processes exceeded bioturbation. Crossbedded lenses of coarse sand or fine gravel in the upper part of this facies suggest the presence of failry long-period surface waves. The bedded fine sandstone is sharply overlain by a crossbedded coarse sandstone facies that is interpreted as a combined offshore bar-rip channel-surf zone assemblage. Cross-strata dip dominantly offshore, suggesting substantial deposition from rip currents. A secondary, shore=parallel mode of cross-strata direction suggests longshore currents produced by surface waves from the northwest. The crossbedded coarse-grained sandstone grades upward into planar-bedded medium-grained sandstone that is interpreted as a beach foreshore. This facies grades upward through structureless medium-grained sandstone into nonmarine or lagoonal red and green mudstone of the Caliente Formation. The middle Miocene succession was deposited in a subsiding basin that was otherwise remarkably stable tectonically; the position of the strand line differed no more than a few kilometers through a period of 1 to 3 m.y. The average duration of the transgressive-regressive cycles, a few tens of thousands of years, together with their distribution in groups of three or four in the lower two-thirds of the succession, is consistent with the pattern of long-term climatic cycles produced by periodicity of the earth's solar orbit and may be related to eustatic sea level changes attendant to the development of the Antarctic ice cap. Changes in the pattern of progradation in the upper part of the succession and nearby basaltic eruptions may hav been precursors to the onset of movement along the San Andreas fault in this area 12-14 m.y. ago.

California↗

EAARL-B coastal topography: Fire Island, New York, pre-Hurricane Sandy, 2012: seamless (bare earth and submerged)

These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida. This project provides highly detailed and accurate datasets for part of Fire Island, New York, acquired pre-Hurricane Sandy on October 27, 2012. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar, known as the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B), was used during data acquisition. The EAARL-B system is a raster-scanning, waveform-resolving, green-wavelength (532-nm) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL-B sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, down-looking red-green-blue (RGB) and infrared (IR) digital cameras, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL-B platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL-B system. The resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed originally in a NASA-USGS collaboration. The exploration and processing of lidar data in an interactive or batch mode is supported using ALPS. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. The Airborne Lidar Processing System (ALPS) is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the "bare earth" under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site.

New York↗

Sediment classification and the characterization, identification, and mapping of geologic substrates for the glaciated Gulf of Maine seabed and other terrains, providing a physical framework for ecological research and seabed management

A geologic substrate is a surface (or volume) of sediment or rock where physical, chemical, and biological processes occur, such as the movement and deposition of sediment, the formation of bedforms, and the attachment, burrowing, feeding, reproduction, and sheltering of organisms. Seabed mapping surveys in the Stellwagen Bank region off Boston, Massachusetts, from 1993 to 2004 have led to the development of a methodology for characterizing, identifying, and mapping geologic substrates. The resulting high-resolution interpretive maps (1:25,000) show the distribution of substrates in a glaciated terrain of banks and basins in water depths of 30 to 185 meters. Data sources used to characterize substrates are multibeam sonar bathymetric and backscatter imagery to document seabed topography and patterns of sediment and rock distribution, grain-size analyses of sediment samples to determine substrate composition, and video and photographic imagery of the seabed to aid in the interpretation of multibeam sonar imagery and to provide information on substrate layering and mobility, seabed structures, and sediments and nonsediment materials that cannot be physically sampled. Sediment composition is a major property of many seabed substrates. Sediment grains belong to a continuum of grain-diameter sizes previously classified into grades (for example, fine sand, medium sand) and into aggregates (mud, sand, gravel). The definition of grade and aggregate boundaries in a classification is arbitrary, and a useful classification is limited to as few classes as are needed to effectively organize and apply information. For the purpose of mapping substrates, sediment grades and aggregates were simplified and re-classified into eight composite grades based on grain-size content, mode of transport, and ecological role. Five composite grades are identified using grain-size analysis and three are identified using video and photographic imagery of the seabed. Naturally occurring sediments contain various amounts of the aggregates mud, sand, and gravel. The separation of naturally occurring sediments into sediment classes, based on grain-size analysis, requires that limits be set on the amount of mud, sand, and gravel each class contains. Fifteen previously identified basic sediment classes provided interpretive information on sediment transport by emphasizing gravel content (a low 0.01-weight-percent threshold) and on winnowing processes based on the sand-to-mud ratio. The present study recognizes 20 basic sediment classes that are combinations of aggregates in which the lower limits for recognition of mud and sand are 10 weight percent and of gravel, 25 weight percent. These sediment classes can be made more specific by listing their content of the composite grades fine-grained sand (3 and 4 phi), which is transported in suspension, and coarse-grained sand (0, 1, and 2 phi), which is transported as bedload. Additional sediment classes and nonsediment classes that cannot be sampled are recognized on the basis of visual analysis of seabed video and photographic imagery and include pebble, cobble, and boulder gravel, rock outcrops, and shell beds, among others. Substrates are not classified because their properties are too varied for a classification to be concise and useful. Rather, substrates are characterized and identified by sediment grain-size composition (the sediment class); the distribution, in millimeters, of grain diameters in the sediment; the presence of nonsediments (for example, rock outcrops); substrate mobility based on the presence of sediment ripples; substrate layering (for example, a partial veneer of sand on gravel); and seabed structures. These properties have interpretive value by providing information about sedimentary processes acting on a substrate and about its ecological function. A geologic substrate, when it is associated with one or more species, is an important element of a habitat. This methodology was developed to map a glaciated terrain characterized by geologic substrates that typify a wide range of erosional and depositional sedimentary environments, and it likely will be useful for mapping substrates in other terrains. Substrate maps provide the physical framework required for identifying sediment transport processes, validating sediment transport models, studying the ecology of species and communities, and managing marine resources and seabed usage.

Massachusetts↗

Shallow structure and geologic development of the Southern Red Sea

A series of 34 shallow-penetration seismic-reflection profiles made across the Red Sea show that it developed in two main stages. Initially, an early or pre-Miocene uplift and lateral extension resulted in crustal thinning and eventual formation of the main Red Sea Basin. During Miocene time, the Red Sea was isolated from the Indian Ocean but possibly connected with the Mediterranean Sea, which, like the Red Sea, was an evaporite basin at that time. A distinct acoustic reflector (reflector S) in the Red Sea marks the top of the Miocene evaporite sequence and is correlative with reflector M in the Mediterranean, which is similarly identified with termination of evaporite conditions. In Pliocene time, connection with the Indian Ocean was re-established, the opening to the Mediterranean was closed, and normal marine conditions were resumed in the Red Sea. Sea-floor spreading first started in Pliocene-Pleistocene time, and resulted in the formation of the axial zone of the Red Sea.

GSA Bulletin↗

Methane hydrate - A major reservoir of carbon in the shallow geosphere?

Methane hydrates are solids composed of rigid cages of water molecules that enclose methane. Sediment containing methane hydrates is found within specific pressure-temperature conditions that occur in regions of permafrost and beneath the sea in outer continental margins. Because methane hydrates are globally widespread and concentrate methane within the gas-hydrate structure, the potential amount of methane present in the shallow geosphere at subsurface depths of < ???2000 m is very large. However, estimates of the amount are speculative and range over about three orders of magnitude, from 2 ?? 103 to 4 ?? 106 Gt (gigatons = 1015 g) of carbon, depending on the assumptions made. The estimate I favor is ??? 1 ?? 104 Gt of carbon. The estimated amount of organic carbon in the methane-hydrate reservoir greatly exceeds that in many other reservoirs of the global carbon cycle - for example, the atmosphere (3.6 Gt); terrestrial biota (830 Gt); terrestrial soil, detritus and peat (1960 Gt); marine biota (3 Gt); and marine dissolved materials (980 Gt). In fact, the amount of carbon may exceed that in all fossil fuel deposits (5 ?? 103 Gt). Because methane hydrates contain so much methane and occur in the shallow geosphere, they are of interest as a potential resource of natural gas and as a possible source of atmospheric methane released by global warming. As a potential resource, methane hydrates pose both engineering and production problems. As a contributor to a changing global climate, destabilized methane hydrates, particularly those in shallow, nearshore regions of the Arctic Ocean, may have some effect, but this effect will probably be minimal, at least during the next 100 years. ?? 1988.

Chemical Geology↗

Planar PCB Hazards to Fish, Wildlife, and Invertebrates: A Synoptic Review

Ecological and toxicological aspects of polychlorinated biphenyls (PCBs) in the environment are reviewed with emphasis on biologically active congeners and fish and wildlife. Subtopics include sources and uses, chemical and biochemical properties, concentrations in field collections, lethal and sublethal effects, and recommendations for the protection of sensitive resources. All production of PCBs in the United States ceased in 1977. Of the 1.2 million tons of PCBs manufactured to date, about 65% are still in use in electrical equipment and 31% in various environmental compartments, and 4% were degraded or incinerated. The 209 PCB congeners and their metabolites show wide differences in biological effects. A significant part of the toxicity associated with commercial PCB mixtures is related to the presence of about 20 planar congeners, i.e., congeners without chlorine substitution in the ortho position. Toxic planar congeners, like other PCB congeners, have been detected in virtually all analyzed samples, regardless of collection locale. Planar PCB concentrations were usually highest in samples from near urban areas and in fat and liver tissues, filter-feeding bivalve mollusks, fish-eating birds, and carnivorous marine mammals. Adverse effects of planar PCBs on growth, survival, and reproduction are highly variable because of numerous biotic and abiotic modifiers, including interaction with other chemicals. In general, embryos and juveniles were the most sensitive stages tested to planar PCBs, and the chinook salmon, domestic chicken, mink, rhesus macaque, and laboratory white rat were among the most sensitive species. for protection of natural resources, most authorities now recommend (1) analyzation of environmental samples for planar and other potentially hazardous congeners; (2) exposure studies with representative species and specific congeners, alone and in combination with other environmental contaminants; (3) clarification of existing structure-induction-metabolism relations; and (4) more research on physiological and biochemical indicators of PCB-stress.

Contaminant Hazard Reviews↗

Patterns of use and distribution of king eiders and black scoters during the annual cycle in northeastern Bristol Bay, Alaska

Northeastern Bristol Bay, Alaska, which includes three large estuaries, is used by multiple sea duck species during the annual cycle. Limited aerial surveys indicate that this area supports tens of thousands of king eiders and black scoters during spring migration and the autumn molt. Existing satellite telemetry data were used to assess the temporal patterns of habitat use and spatial distribution of king eiders and black scoters in northeastern Bristol Bay throughout the annual cycle. King eiders used northeastern Bristol Bay during all months of the annual cycle and black scoters used the area during spring through fall. Both species exhibited a similar seasonal pattern of use that corresponded with the timing of life-cycle stages. Abundance of both species was highest during spring migration and the autumn molting period and lowest during summer. Use by king eiders did not occur during all winter months in every year of the study. King eiders were more broadly distributed than black scoters and were located farther from shore in deeper water. Core use areas had minimal overlap, suggesting a degree of spatial segregation between species and a preference for different habitats in northeastern Bristol Bay. Further study of potential variation in invertebrate community structure that may correlate with the observed interspecific spatial segregation in habitat use is needed to determine preferred forage and describe habitat requirements for each species. Such information is necessary to assess the potential impact that future anthropogenic or environmental changes may have on habitat quality of northeastern Bristol Bay and demography of Pacific sea duck populations that use this area.

Alaska↗

Pesticide residues in ground water of the San Joaquin Valley, California

A regional assessment of non-point-source contamination of pesticide residues in ground water was made of the San Joaquin Valley, an intensively farmed and irrigated structural trough in central California. About 10% of the total pesticide use in the USA is in the San Joaquin Valley. Pesticides detected include atrazine, bromacil, 2.4-DP, diazinon, dibromochloropropane, 1,2-dibromoethane, dicamba, 1,2-dichloropropane, diuron, prometon, prometryn, propazine and simazine. All are soil applied except diazinon. Pesticide leaching is dependent on use patterns, soil texture, total organic carbon in soil, pesticide half-life and depth to water table. Leaching is enhanced by flood-irrigation methods except where the pesticide is foliar applied such as diazinon. Soils in the western San Joaquin Valley are fine grained and are derived primarily from marine shales of the Coast Ranges. Although shallow ground water is present, the fewest number of pesticides were detected in this region. The fine-grained soil inhibits pesticide leaching because of either low vertical permeability or high surface area; both enhance adsorption on to solid phases. Soils of the valley floor tend to be fine grained and have low vertical permeability. Soils in the eastern part of the valley are coarse grained with low total organic carbon and are derived from Sierra Nevada granites. Most pesticide leaching is in these alluvial soils, particularly in areas where depth to ground water is less than 30m. The areas currently most susceptible to pesticide leaching are eastern Fresno and Tulare Counties. Tritium in water molecules is an indicator of aquifer recharge with water of recent origin. Pesticide residues transported as dissolved species were not detected in non-tritiated water. Although pesticides were not detected in all samples containing high tritium, these samples are indicative of the presence of recharge water that interacted with agricultural soils.

Journal of Hydrology↗

Sembar Goru/Ghazij Composite Total Petroleum System, Indus and Sulaiman-Kirthar Geologic Provinces, Pakistan and India

Geochemical analyses of rock samples and produced oil and gas in the Indus Basin have shown that the bulk of the hydrocarbons produced in the Indus Basin are derived from the Lower Cretaceous Sembar Formation and equivalent rocks. The source rocks of the Sembar are composed of shales that were deposited in shallow marine environments, are of mixed type-II and type-III kerogen, with total organic carbon (TOC) content ranging from less than 0.5 percent to more than 3.5 percent; the average TOC of the Sembar is about 1.4 percent. Vitrinite reflectance (Ro) values range from immature (< 0.6 percent Ro) to over mature (>1.35 percent Ro). Thermal generation of hydrocarbons in the Sembar Formation began 65 to 40 million years ago, (Mya) during Paleocene to Oligocene time. Hydrocarbon expulsion, migration, and entrapment are interpreted to have occurred mainly 50 to 15 Mya, during Eocene to Miocene time, prior to and contemporaneously with the development of structural traps in Upper Cretaceous and Tertiary reservoirs. The principal reservoirs in the Sembar-Goru/Ghazij Composite Total Petroleum System are Upper Cretaceous through Eocene sandstones and limestones.

Bulletin↗

EAARL-B submerged topography: Barnegat Bay, New Jersey, pre-Hurricane Sandy, 2012

These remotely sensed, geographically referenced elevation measurements of lidar-derived submerged topography datasets were produced by the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center, St. Petersburg, Florida. This project provides highly detailed and accurate datasets for part of Barnegat Bay, New Jersey, acquired pre-Hurricane Sandy on October 18, 22, 23, and 26, 2012. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar, known as the second-generation Experimental Advanced Airborne Research Lidar (EAARL-B), was used during data acquisition. The EAARL-B system is a raster-scanning, waveform-resolving, green-wavelength (532-nm) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL-B sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, down-looking red-green-blue (RGB) and infrared (IR) digital cameras, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL-B platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL-B system. The resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed originally in a NASA-USGS collaboration. The exploration and processing of lidar data in an interactive or batch mode is supported using ALPS. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. The Airborne Lidar Processing System (ALPS) is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the "bare earth" under vegetation from a point cloud of last return elevations. For more information about similar projects, please visit the Lidar for Science and Resource Management Web site.

New Jersey↗

Archive of digital chirp subbottom profile data collected during USGS cruise 12BIM03 offshore of the Chandeleur Islands, Louisiana, July 2012

From July 23 - 31, 2012, the U.S. Geological Survey conducted geophysical surveys to investigate the geologic controls on barrier island framework and long-term sediment transport along the oil spill mitigation sand berm constructed at the north end and just offshore of the Chandeleur Islands, La. (figure 1). This effort is part of a broader USGS study, which seeks to better understand barrier island evolution over medium time scales (months to years). This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Abbreviations page for expansions of acronyms and abbreviations used in this report. The USGS St. Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 12BIM03 tells us the data were collected in 2012 during the third field activity for that project in that calendar year and BIM is a generic code, which represents efforts related to Barrier Island Mapping. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. All chirp systems use a signal of continuously varying frequency; the EdgeTech SB-424 system used during this survey produces high-resolution, shallow-penetration (typically less than 50 milliseconds (ms)) profile images of sub-seafloor stratigraphy. The towfish contains a transducer that transmits and receives acoustic energy and is typically towed 1 - 2 m below the sea surface. As transmitted acoustic energy intersects density boundaries, such as the seafloor or sub-surface sediment layers, energy is reflected back toward the transducer, received, and recorded by a PC-based seismic acquisition system. This process is repeated at regular time intervals (for example, 0.125 seconds (s)) and returned energy is recorded for a specific duration (for example, 50 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 2 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y rev. 0 format (Barry and others, 1975); the first 3,200 bytes of the card image header are in ASCII format instead of EBCDIC format. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU) (Cohen and Stockwell, 2010). See the How To Download SEG Y Data page for download instructions. The web version of this archive does not contain the SEG Y trace files. These files are very large and would require extremely long download times. To obtain the complete DVD archive, contact USGS Information Services at 1-888-ASK-USGS or infoservices@usgs.gov. The printable profiles provided here are GIF images that were processed and gained using SU software and can be viewed from the Profiles page or from links located on the trackline maps; refer to the Software page for links to example SU processing scripts. The SEG Y files are available on the DVD version of this report or on the Web, downloadable via the USGS Coastal and Marine Geoscience Data System (http://cmgds.marine.usgs.gov). The data are also available for viewing using GeoMapApp (http://www.geomapapp.org) and Virtual Ocean (http://www.virtualocean.org) multi-platform open source software. Detailed information about the navigation system used can be found in table 1 and the Field Activity Collection System (FACS) logs. To view the trackline maps and navigation files, and for more information about these items, see the Navigation page.

Louisiana↗

Geologic map and map database of the Spreckels 7.5-minute Quadrangle, Monterey County, California

Introduction The Spreckels quadrangle lies at the north end of the Sierra de Salinas and extends from the Salinas Valley on the northeast across Los Laurelles Ridge south to Carmel Valley, an intermontane valley that separates the Santa Lucia Range from the Sierra de Salinas (fig. 1). The Toro Regional Park occupies the east-central part of the quadrangle, whereas the former Fort Ord Military Reservation covers the northwestern part of the area and is the probable locus of future development. Subdivisions largely occupy the older floodplain of Toro Creek and the adjacent foothills, with less dense development along the narrower canyons of Corral de Tierra and San Benancio Gulch to the south. The foothills southwest of the Salinas River are the site of active residential development. Geologically, the study area has a crystalline basement of Upper Cretaceous granitic rocks of the Salinian block and older metasedimentary rocks of the schist of the Sierra de Salinas of probable Cretaceous age. Resting nonconformably upon these basement rocks is a sedimentary section that ranges in age from middle Miocene to Holocene and has a composite thickness of as much as 1,200 m. One of the purposes of the present study was to investigate the apparent lateral variation of the middle to upper Miocene sections from the typical porcelaneous and diatomaceous Monterey Formation of the Monterey and Seaside quadrangles to the west (Clark and others, 1997) to a thick marine sandstone section in the eastern part of the Spreckels quadrangle. Liquefaction, which seriously affected the Spreckels area in the 1906 San Francisco earthquake (Lawson, 1908), and landsliding are the two major geological hazards of the area. The landslides consist mainly of older large slides in the southern and younger debris flows in the northern part of the quadrangle. This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (skmf.txt, skmf.pdf, or skmf.ps), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:24,000 or smaller.

Miscellaneous Field Studies Map↗

Comments to Middle Miocene closure of the Central American Seaway

In a recent paper proposing an early (mid-Miocene) closure of the Central American Seaway (CAS), Montes et al. 2015 (1) disregard existing paleogeographic data that invalidate Panama as a source for zircons, and inappropriately ignore the evidence for trans-isthmian marine connections until 4-3 Ma. They also fail to cite previous work (2, 3), that had reconstructed the Central American arc already docked with South America by 12 Ma. Montes et al. 2015 (1) (Fig. 1) disregard the Atrato-San Juan sedimentary basin (3), a shallowing Oligocene to Pliocene, Pacific to Caribbean seaway (3, 4, 5). This deep graben (6) is filled with thousands of meters of Pre-Pliocene marine sediments (3, 5, 6) that now occupy a lowland between the Baudo uplift to the west and the Western Cordillera to the east. The Mande Batholith and numerous Eocene and younger volcanic rocks (4), the most proximal source of the zircons, are situated to the east of this seaway and would have shed zircons eastward towards the Cordillera Central. There is no evidence for any rivers crossing the seaway (3, 5), and thus no Panamanian source of zircons. Instead this seaway is evidence of a significant marine connection between the Pacific and Atlantic oceans into the Pliocene. The authors assume that the middle Miocene closure of the CAS effectively creates a continuous land bridge connecting North and South America and separating the Atlantic from the Pacific. They acknowledge, but then discount, marine connections across the Isthmus until 4-3 Ma even though these satisfactorily explain (Coates and Stallard, 2014 (6)) the oceanographic, molecular and Great American Biological Interchange events ignore unexplained by Montes et al. 2015. Only by conspicuously ignoring these events can they imply that the Isthmus was formed at 15-13 Ma. References 1. C. Montes et al., Middle Miocene closure of the Central American Seaway. Science 348, 226-229 (2015). 2. A. G. Coates, R. F. Stallard, How old is the Isthmus of Panama? B Mar Sci 89, 801-813 (2013). 3. H. Duque-Caro, The Choco Block in the northwestern corner of South America: Structural, tectonostratigraphic, and paleogeographic implications. Journal of South American Earth Sciences 3, 71-84 (1990). 4. H. Duque-Caro, Neogene stratigraphy, paleoceanography and paleobiogeography in northwest South America and the evolution of the Panama Seaway. Pal

Science↗

Minturn and Sangre de Cristo formations of Southern Colorado: A prograding fan delta and alluvial fan sequence shed from the ancestral Rocky Mountains

The Middle Pennsylvania!) Minturn Formation and the Pennsylvanian-Permian Sangre de Cristo Formation of the northern Sangre de Cristo Range form a thick progradational sequence of coarse clastic sediments. These sediments were deposited along the western margin of the central Colorado trough during uplift of the late Paleozoic Uncompahgre highland, a major structural and topographic feature of the Ancestral Rocky Mountains. The Minturn is composed mostly of sandstone and shale deposited by fan deltas that prograded into the central Colorado trough. The Minturn of the northern Sangre de Cristo Range is divisible into a turbidite-bearing facies, a limestone-bearing facies, and a redbed facies. The turbidite-bearing facies is interpreted as deposits of fan deltas that prograded onto the sea bottom below wave base. The limestone-bearing facies is interpreted as deposits of fan deltas that prograded onto a shallow sea bottom above wave base. In this facies, sandstones containing deltaic foresets overlie thin shallow marine limestones and are considered diagnostic of that facies. Both facies contain thick intervals of sandstone and shale interpreted as deltaic and alluvial deposits. Where it onlaps the Uncompahgre highland, the lower part of the Minturn Formation contains quartzose and arkosic redbeds of probable alluvial origin. The continental Sangre de Cristo Formation conformably overlies the Minturn Formation basinward, but it unconformably overlies the Minturn and Precambrian basement near the Uncompahgre highland. The Sangre de Cristo contains two facies. A sandstone facies consists of fining-upward cycles of red conglomeratic sandstone and siltstone interpreted as braided stream deposits on distal parts of alluvial fans. A conglomerate facies (Crestone Conglomerate Member) consists of poorly sorted conglomerates interpreted as debris flow and mudflow deposits and sorted conglomerate and sandstone interpreted as streamflow and sheetflow deposits on proximal parts of alluvial fans. The fan deltas and alluvial fans that deposited the Minturn and Sangre de Cristo formations probably developed in response to faulting and uplift of the Uncompahgre highland. The highland rose at least three times from Middle Pennsylvanian to Early Permian time. Later, during the Laramide orogeny, the faulted boundary between the highland and the central Colorado trough was destroyed by thrusting. The boundary faults were not strike-slip, as shown by the distribution of clasts in conglomerates directly downstream from identical Precambrian rocks that represent part of the highland.

Colorado↗

Decreased abundance of crustose coralline algae due to ocean acidification

Owing to anthropogenic emissions, atmospheric concentrations of carbon dioxide could almost double between 2006 and 2100 according to business-as-usual carbon dioxide emission scenarios 1 . Because the ocean absorbs carbon dioxide from the atmosphere 2, 3, 4 , increasing atmospheric carbon dioxide concentrations will lead to increasing dissolved inorganic carbon and carbon dioxide in surface ocean waters, and hence acidification and lower carbonate saturation states 2, 5 . As a consequence, it has been suggested that marine calcifying organisms, for example corals, coralline algae, molluscs and foraminifera, will have difficulties producing their skeletons and shells at current rates 6, 7 , with potentially severe implications for marine ecosystems, including coral reefs 6, 8, 9, 10, 11 . Here we report a seven-week experiment exploring the effects of ocean acidification on crustose coralline algae, a cosmopolitan group of calcifying algae that is ecologically important in most shallow-water habitats 12, 13, 14 . Six outdoor mesocosms were continuously supplied with sea water from the adjacent reef and manipulated to simulate conditions of either ambient or elevated seawater carbon dioxide concentrations. The recruitment rate and growth of crustose coralline algae were severely inhibited in the elevated carbon dioxide mesocosms. Our findings suggest that ocean acidification due to human activities could cause significant change to benthic community structure in shallow-warm-water carbonate ecosystems.

Nature Geoscience↗

Cores from marine geologic features in the western Gulf of Maine

Submerged geologic features located in the western Gulf of Maine between Cape Ann, Massachusetts and New Hampshire (fig. 1), were identified from high-resolution seismic-reflection data collected between 1979 and 1980. The features include the following. (1) A pair of end morained formed during the retreat of the Laurentide Ice Sheet from the Gulf of Maine (Oldale, 1985a). (2) A barrier spit and lagoon complex and (3) a paleodelta, both of which formed during a late Wisconsinan to early Holocene low relative sea-level stand (Oldale and others, 1983; Oldale, 1985b). (4) A wave-cut unconformity that was eroded as the sea transgressed to its present position. (5) A surficial sand depost that formed atop the unconformity in middle Holocene time. Vibracores (fig. 2) were taken in 1984 to corroborate the interpretations from the seismic data, to determine the sedimentary texture and structure of the features, to identify the nature of the unconformity, and to obtain material for 14 C dating,

Maine↗