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USGS2023

Divergent responses of western Alaska salmon to a changing climate

Headlines Western Alaska salmon abundance reached historic extremes during 2021-22, with record lows for Chinook and chum salmon (81% and 92% below the 30-year mean, respectively) and record highs for sockeye salmon (98% above the 30-year mean). Salmon are maturing at smaller sizes. Since the 1970s, for example, Yukon River Chinook salmon have decreased an estimated 6% in mean adult body length and 15% in fecundity, likely exacerbating population declines. Salmon population declines have led to fishery closures, worsened user conflicts, and had profound cultural and food security impacts in Indigenous communities that have been tied to salmon for millennia. Changes in abundance and size are associated with climatic changes in freshwater and marine ecosystems and competition in the ocean. Changes in predators, food supply, and disease are also likely important drivers.

Alaska↗

USGS2012

Effects of flood control and other reservoir operations on the water quality of the lower Roanoke River, North Carolina

The Roanoke River is an important natural resource for North Carolina, Virginia, and the Nation. Flood plains of the lower Roanoke River, which extend from Roanoke Rapids Dam to Batchelor Bay near Albemarle Sound, support a large and diverse population of nesting birds, waterfowl, freshwater and anadromous fish, and other wildlife, including threatened and endangered species. The flow regime of the lower Roanoke River is affected by a number of factors, including flood-management operations at the upstream John H. Kerr Dam and Reservoir. A three-dimensional, numerical water-quality model was developed to explore links between upstream flows and downstream water quality, specifically in-stream dissolved-oxygen dynamics. Calibration of the hydrodynamics and dissolved-oxygen concentrations emphasized the effect that flood-plain drainage has on water and oxygen levels, especially at locations more than 40 kilometers away from the Roanoke Rapids Dam. Model hydrodynamics were calibrated at three locations on the lower Roanoke River, yielding coefficients of determination between 0.5 and 0.9. Dissolved-oxygen concentrations were calibrated at the same sites, and coefficients of determination ranged between 0.6 and 0.8. The model has been used to quantify relations among river flow, flood-plain water level, and in-stream dissolved-oxygen concentrations in support of management of operations of the John H. Kerr Dam, which affects overall flows in the lower Roanoke River. Scenarios have been developed to mitigate the negative effects that timing, duration, and extent of flood-plain inundation may have on vegetation, wildlife, and fisheries in the lower Roanoke River corridor. Under specific scenarios, the model predicted that mean dissolved-oxygen concentrations could be increased by 15 percent by flow-release schedules that minimize the drainage of anoxic flood-plain waters. The model provides a tool for water-quality managers that can help identify options that improve water quality and protect the aquatic habitat of the Roanoke River.

North Carolina, Virginia↗

USGS2012

Managing inherent complexity for sustainable walleye fisheries in Lake Erie

In Lake Erie, Walleye ( Sander vitreus vitreus ) is king. The naturally occurring species is the foundation of commercial fishing operations on the Canadian side of the lake and is a much-prized sport fish on the American side. Management of Lake Erie walleye fisheries is complex and takes place in an inter-jurisdictional setting composed of resource agencies from the states of Michigan (MDNR), Ohio (ODNR), Pennsylvania (PFBC), and New York (NYDEC) and the province of Ontario (OMNR). The complexity of walleye management is exacerbated by interactions among environmental and ecological changes in Lake Erie, complex life-history characteristics of the species, public demand for walleye, and cultural/governance differences among managing groups and their respective constituents. Success of future management strategies will largely hinge upon our ability to understand these inherent complexities and to employ tactics that successfully accommodate stock productivity and human demand in a highly dynamic environment. In this report, we review the history of Lake Erie walleye management, outline the multi-jurisdictional process for international management of walleye, and discuss strategies to address challenges facing managers.

Book chapter↗

USGS1956

Experimental induction of blue-sac disease

Blue‐sac disease, an abnormal condition of sac fry, has been recognized for nearly 90 years. At least 23 postulated causes have been advanced, but reports of consistently reproducible results have not been found in literature. Methods whereby blue‐sac disease was induced at will are described. Closed‐system incubation, whereby metabolic wastes accumulated, resulted in incidences of blue‐sac disease roughly proportional to the period of holding and to ammonia concentrations which developed. Blue‐sac disease was also induced by adding synthetic nitrogen compounds to water used for incubating eggs and fry.

Transactions of the American Fisheries Society↗

USGS2002

Cruise report RV Moana Wave Cruise M-1-02-GM bathymetry and acoustic backscatter of the mid and outer continental shelf, head of De Soto Canyon, northeastern Gulf of Mexico June 17, through July 9, 2002 Pensacola, FL to Pensacola, FL

The mid to outer continental shelf off Mississippi-Alabama and off northwest Florida were the focus of US Geological Survey (USGS) multibeam echosounder (MBES) mapping cruises in 2000 and 2001, respectively. These areas were mapped to investigate the extent of "deep-water reefs" first suggested by Ludwick and Walton (1957). The reefs off Mississippi and Alabama were initially described in water depths of 60 to 120 m (Ludwick and Walton, 1957) but the 2000 mapping found reef and hardgrounds to be much more extensive than previously thought (Gardner et al., 2001). The persistent trend of reef-like features along the outer shelf of Mississippi-Alabama suggested the trend might continue along the northwest Florida mid and outer shelf so a MBES-mapping effort was mounted in 2001 to test this suggestion. It is critical to determine the accurate location, geomorphology, and types of the ridges and reefs that occur in this region to understand the Quaternary history of the area and to assess their importance as benthic habitats for fisheries. The 2001 survey found a series of shelf-depth platforms with ridges (possibly reefs) constructed on their surfaces (Gardner et al., 2002). The area known as the "head of De Soto Canyon" is the large unmapped region between the 2000 and 2001 mapped areas. The head of De Soto Canyon is an outer shelf zone with a relatively steep western wall and a much gentler eastern wall. It was unknown prior to this cruise whether the reefs of the Mississippi-Alabama shelf continue eastward into the head of De Soto Canyon and connect with the ridges and reefs mapped on the northwest Florida outer shelf. The existence of carbonate-cemented latest Quaternary to Holocene sandstones along the western wall of the head of De Soto Canyon (Shipp and Hopkins, 1978; Benson et al., 1997; W.W. Schroeder, personnel comm., 2002) is of interest because of the potential benthic habitats they may represent. Precisely georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of an area suspected to be critical benthic habitats. Morphology is thought to be critical to define the distribution of dominant demersal plankton/planktivores communities. Community structure and trophodynamics of demersal fishes of the outer continental shelf of the northeastern Gulf of Mexico presently are focuses of a major USGS research project. A goal of the project is to answer questions concerning the relative roles played by morphology and surficial geology in controlling biological differentiation. Deep-water ridges, reefs, and outcrops are important because they are fish havens and key spawning sites, and are critical habitats for larval, juvenile, and economically important sport/food fishes.

Gulf of Mexico, head Of De Soto Canyon↗

USGS2011

Development of a bioenergetics model for age-0 American Shad

Bioenergetics modeling can be used as a tool to investigate the impact of non-native age-0 American shad (Alosa sapidissima) on reservoir and estuary food webs. The model can increase our understanding of how these fish influence lower trophic levels as well as predatory fish populations that feed on juvenile salmonids. Bioenergetics modeling can be used to investigate ecological processes, evaluate alternative research hypotheses, provide decision support, and quantitative prediction. Bioenergetics modeling has proven to be extremely useful in fisheries research (Ney et al. 1993,Chips and Wahl 2008, Petersen et al. 2008). If growth and diet parameters are known, the bioenergetics model can be used to quantify the relative amount of zooplankton or insects consumed by age-0 American shad. When linked with spatial and temporal information on fish abundance, model output can guide inferential hypothesis development to demonstrate where the greatest impacts of age-0 American shad might occur.

Report↗

USGS2011

How systematic age underestimation can impede understanding of fish population dynamics: Lessons learned from a Lake Superior cisco stock

Systematic underestimation of fish age can impede understanding of recruitment variability and adaptive strategies (like longevity) and can bias estimates of survivorship. We suspected that previous estimates of annual survival ( S ; range = 0.20-0.44) for Lake Superior ciscoes Coregonus artedi developed from scale ages were biased low. To test this hypothesis, we estimated the total instantaneous mortality rate of adult ciscoes from the Thunder Bay, Ontario, stock by use of cohort-based catch curves developed from commercial gill-net catches and otolith-aged fish. Mean S based on otolith ages was greater for adult females (0.80) than for adult males (0.75), but these differences were not significant. Applying the results of a study of agreement between scale and otolith ages, we modeled a scale age for each otolith-aged fish to reconstruct catch curves. Using modeled scale ages, estimates of S (0.42 for females, 0.36 for males) were comparable with those reported in past studies. We conducted a November 2005 acoustic and midwater trawl survey to estimate the abundance of ciscoes when the fish were being harvested for roe. Estimated exploitation rates were 0.085 for females and 0.025 for males, and the instantaneous rates of fishing mortality were 0.089 for females and 0.025 for males. The instantaneous rates of natural mortality were 0.131 and 0.265 for females and males, respectively. Using otolith ages, we found that strong year-classes at large during November 2005 were caught in high numbers as age-1 fish in previous annual bottom trawl surveys, whereas weak or absent year-classes were not. For decades, large-scale fisheries on the Great Lakes were allowed to operate because ciscoes were assumed to be short lived and to have regular recruitment. We postulate that the collapse of these fisheries was linked in part to a misunderstanding of cisco biology driven by scale-ageing error.

Thunder Bay↗

USGS1995

Growth and survival of newly parasitic sea lampreys at representative winter temperatures

Larval sea lampreys Petromyzon marinus begin to metamorphose into their parasitic phase in July and migrate to the Great Lakes either in autumn, when they immediately feed on fish, or in spring after overwintering in the stream substrate. Survival and growth of newly parasitic autumn migrants (mean weight, 4.18 g) differed significantly between temperature treatments when sea lampreys were held over winter and allowed to feed on longnose suckers Catostomus catostomus at either the maximum available temperature (&tilde;4°C) or normal surface temperature (minimum <1°C) in the Great Lakes during winter. Survival from December 1990 to June 1991 was 60% for the animals held in the warmer water but only 30% for the animals held in the colder water until 23 April. The average increase in weight was 8.23 g for the 35 survivors in the warmer water but only 5.15 g for the 17 survivors in the colder water. Average increases in weight from December to May for sea lampreys at both temperatures were 3.8 to 6.6 times greater than increases reported previously. A newly metamorphosed sea lamprey that migrates to the Great Lakes in autumn could be 2.5 to 3 times larger in June than one that overwinters in the stream substrate, where it cannot feed, and migrates in spring. Hence, autumn migrants may have an advantage in growth and survival over spring migrants, particularly if food supply is adequate in the warmest stratum of the lake during winter.

Transactions of the American Fisheries Society↗

USGS1982

Fish culture: an annotated bibliography of publications of the National Fisheries Center, Leetown, 1972-1980

This is an annotated bibliography of the publications authored or co-authored by the staff of the National Fisheries Center - Leetown (NFC-L) from 1972 through 1980. It includes publications from NFC-L staff at the Fish Farming Experimental Station, Stuttgart, AR; the Fish Genetics Laboratory, Beulah, WY; the Hagerman Field Station of the Tunison Laboratory of Fish Nutrition, Hagerman, ID; the National Fisheries Research and Development Laboratory, Marison, AL; and, the Tunison Laboratory of Fish Nutrition, Cortland, NY. It also includes publications from NFC-L staff at the Aquaculture Production/Demonstration Station, Fisheries Academy, Fish Genetics Station, National Fish Health Research Laboratory, and Technical Information Services, each located in Kearneysville, WV. Prior to 1977, each functioned as a separate entity within the U.S. Fish and Wildlife Service. In 1977, the administrative and program activities of these components were merged into the Natkonal Fisheries Center. This bibliography lists the publications issued by each of these entities both before and after becoming joined into the Center. Publications from these components prior to 1972 are documents in U.S. Bureau of Sport Fisheries and Wildlife, Resource Publication 120, Bibliography of Research Publications of the U.S. Bureau of Sport Fisheries and Wildlife, 1928-72 . Entries in this bibliography are arranged under broad subject categories, similar to those used in U.S. Fish and Wildlife Service, Sport Fishery Abstracts . Within these categories, the publications are then arranged alphabetically by author and sequentially by date of publication. They cover a wide range of scientific and technical disciplines applicable to the field of aquaculture. The annotations were submitted by each NFC-L component, and were modified to some extent for uniformity. An author index is included at the end of the bibliography.

Report↗

USGS2024

Wolf harvest management strategy evaluation: Annual Report, 2024

Wolf harvest season setting is complicated and controversial. State law requires Montana Fish, Wildlife and Parks (MFWP) to both reduce the wolf population and avoid federal relisting under the Endangered Species Act (Montana Fish, Wildlife and Parks, 2002). Disparate stakeholder groups each have different objectives for wolf management. For instance, big game advocates want to see improved big game populations and hunting opportunities in northwest Montana, while wolf advocates want to see regulations that minimize wolf mortality. Decision making about season setting tries to balance these objectives. Wolf hunting and trapping season decisions are made by the Montana Fish and Wildlife Commission and are informed by annual wolf abundance estimates from an integrated patch occupancy model (iPOM, Sells et al., 2022c) as well as the predictions of wolf abundance into the future under potential constant harvest levels. Parametric uncertainty (uncertainty surrounding the value of a parameter) from the iPOM estimates is propagated through to future projections, providing the Commission with plausible and worst-case outcomes of different levels of public harvest over the short term, i.e., five years into the future, on the wolf population in Montana (Parks et al., 2024). An alternative approach to inform wolf management and harvest decisions is through adaptive management. Adaptative management is appropriate for decisions that are made iteratively and when monitoring data are collected to learn about the outcomes from decisions, where monitoring data help to reduce critical uncertainties regarding ecosystem function or management outcomes (Walters, 1986; Williams, 2011). Management strategy evaluation (MSE) is one way to develop an adaptive management framework. MSE was developed by fisheries managers and scientists to more accurately and fully incorporate various forms of uncertainty, consider long-term time horizons, and add more transparency in a fisheries context (Punt et al., 2016). It has been used routinely and has become a standard approach for complicated and contentious marine fisheries management situations, yet it has been underutilized in wildlife management (but see Bunnefeld et al., 2013, 2011). MSE is a forward simulation approach for testing prospective management options or strategies over a wide range of possible states (Punt et al., 2016). A MSE framework captures the ‘truth’ or what is happening in the system (termed the ‘the operating model’) and the information available to the decision makers (termed ‘the estimation model’ or ‘management strategy’). More precisely, there are four main processes modeled. First, models are constructed based on current understanding and data to represent ‘truth’. Second, the collection of monitoring data is simulated from the ‘truth’ model. Third, the simulated monitoring data are fit to an estimation model and the next time step’s population metrics are predicted from the estimated parameters. Fourth, based on the estimation model results and the predictions, the decision-making process is simulated following a management strategy, whereby a decision is made and the implementation of this decision feeds back into the ‘truth’ model (Figure 1). This process continues through time. Additionally, each simulation through time is repeated to capture the full range of stochasticity and uncertainty.

Montana↗

USGS2017

What can volunteer angler tagging data tell us about the status of the Giant Trevally (ulua aukea) Caranx ignobilis fishery in Hawaii: revisiting data collected during Hawaii’s Ulua and Papio Tagging Project 2000-2016

Giant Trevally (ulua aukea) Caranx ignobilis is one of the most highly prized and frequently targeted nearshore species. However, there is very little information on its current status in Hawaiian waters. This study uses mark-recapture data collected as part of recreational angler tagging program conducted by the Hawaii Department of Land and Natural Resources-Division of Aquatic Resources during 2000-2012. Mark-recapture data were used to estimate von Bertalanffy growth curve parameters and survivorship. Growth curves generated from the markrecapture data suggested that Giant Trevally from the main Hawaiian Islands may be growing faster and reach a smaller maximum size than individuals in the Northwest Hawaiian Islands, but there are a number of issues rendering this conclusion uncertain. The survivorship of Giant Trevally was positively associated with age, in part due to ontogenetic habitat shifts that result in older fish moving to offshore habitats where they are less vulnerable to anglers. When compared to stock assessments performed using commercial landings data and fisheries-independent visual surveys, the mark-recapture data produced similar estimates for the average length of exploited fish, a metric highly negatively correlated to fishing mortality. These results emphasize the need for additional information on the biology of Giant Trevally in Hawaiian waters and suggest that the data collected from this recreational angler tagging program may be useful to generate reliable estimates of mortality for stock assessment purposes.

Hawaii↗

USGS2009

Angler awareness of aquatic nuisance species and potential transport mechanisms

The role anglers play in transporting aquatic nuisance species (ANS) is important in managing infestations and preventing introductions. The objectives of this study were to: (1) quantify angler movement patterns in southwestern Montana, ANS awareness and equipment cleaning practices; and (2) quantify the amount of soil transported on boots and waders. Mean distance travelled by residents from their home to the survey site was 115 km (??17, 95% CI). Mean distance travelled by non-residents was 1738 km (??74). Fifty-one percent of residents and 49% of non-residents reported occasionally, rarely or never cleaning their boots and waders between uses. Mean weight of soil carried on one boot leg was 8.39 g (??1.50). Movement and equipment cleaning practices of anglers in southwestern Montana suggest that future control of ANS dispersal may require restricting the use of felt-soled wading boots, requiring river-specific wading equipment or providing cleaning stations and requiring their use. ?? 2009 Blackwell Publishing Ltd.

Fisheries Management and Ecology↗

USGS1998

Vertical distribution of the chloromonad flagellate Heterosigma carterae in columns: Implications for bloom development

Blooms of the marine flagellate Heterosigma carterae have been associated with catastrophic fish kills at mariculture facilities around the world. The precise cause(s) of the sudden appearance and disappearance of Heterosigma surface blooms has not been completely described or understood. Environmental data from prior studies of blooms indicate the presence of vertical stratification of the water column that is often induced by freshwater runoff. We report the relatively rapid concentration of Heterosigma cells at the surface of tubes shortly after the addition of distilled water to the surface. This phenomenon of cell concentration in surface waters may partially explain the sudden appearance of Heterosigma cells near the surface and subsequent disappearance when vertical stratification is lost due to turbulence or mixing. The results may lead to bloom mitigation techniques for net pen aquaculture.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2014

Vegetation types in coastal Louisiana in 2013

During the summer of 2013, the U.S. Geological Survey, Louisiana State University, University of Louisiana at Lafayette, and the Louisiana Department of Wildlife and Fisheries Coastal and Nongame Resources Division jointly completed an aerial survey to collect data on 2013 vegetation types in coastal Louisiana. Plant species were listed and their abundance classified. On the basis of species composition and abundance, each marsh sampling station was assigned a marsh type: fresh, intermediate, brackish, or saline (saltwater) marsh. The current map presents the data collected in this effort.

Louisiana↗

USGS1993

Proceedings of the symposium on restoration planning for the rivers of Mississippi River ecosystem

This volume presents over 25 papers containing the proceedings of a symposium held at the 122nd annual meeting of the American Fisheries Society in September 1992. The symposium was organised to review the status of fish and wildlife resources and restoration planning for the Mississippi river ecosystem. The objectives of the symposia were as follows: to present existing information of the biota and values associated with riverine resources throughout the basin; to identify existing or planned actions that might be useful for fisheries management in rivers within the basin and to identify minimal requirements for the restoration of important fish stocks, other aquatic resources and entire ecosystems. Papers included in this issue cover the following topics: thee impacts of altered hydrologic sediment and organic matter cycles; the availability of woody debris in the river cross-section, loss of floodplain and side-arm connection, and changing water quality.

Mississippi River Basin↗

USGS2021

Recruitment bottlenecks for age-0 walleye in northern Wisconsin lakes

Some northern Wisconsin lakes have shown declines in catches of age-0 Walleye Sander vitreus in standardized fall electrofishing sampling, suggesting that recruitment bottlenecks are occurring in the first several months of life. In 2016 and 2017, we sampled six lakes with declining trends in natural Walleye recruitment (D-NR lakes) and seven lakes with a history of sustained natural recruitment (S-NR lakes) to determine if timing of potential recruitment bottlenecks for age-0 Walleye were consistent among D-NR lakes and if abiotic and biotic metrics differed between D-NR and S-NR lakes. We also examined diets of larval Walleye to assess prey items that may be important to early growth and survival and to determine if occurrence of piscivory was related to larval Walleye total length. Differential patterns in the presence and absence of age-0 Walleye at different life history stages in the first 6 months of life suggested that recruitment bottlenecks in D-NR lakes were consistently occurring before mid-July (five of six lakes). Mean Secchi depth, surface conductivity, abundance of larval Yellow Perch Perca flavescens , and most metrics of zooplankton abundance and mean size were similar between D-NR and S-NR lakes. Log 10 transformed number of adult Walleye per hectare was lower and adult mean total length was higher in D-NR lakes. Across all lakes, diets of larval Walleye consisted of zooplankton and larval fish and the occurrence of piscivory was higher than reported in previous studies and was positively related to total length of larval Walleye. Causes of recruitment bottlenecks in D-NR lakes remain unclear, making it difficult to identify management actions that might be implemented to circumvent these bottlenecks. However, our results indicate that future research should focus on the period between egg deposition and mid-July.

Wisconsin↗

USGS1974

Fish sporozoa: Extraction of antigens from Myxosoma cerebralis spores which mimic tissue antigens of rainbow trout (Salmo gairdneri)

This is the first report of an antigenic preparation from the spore stage of any histozoic sporozoan parasite. The method for successful extraction of the antigens is presented. This antigenic preparation is active in rabbits, but not salmonid fish. The detection of asymptomatic carrier fish using the spore antigens was not successful and evidence is presented to show that the parasite is successful because its antigens mimic those of trout. Immunoelectrophoresis indicates the parasite and trout antigens are different proteins.

Journal of the Fisheries Research Board of Canada↗

USGS2012

Western Fisheries Research Center--Forage fish studies in Puget Sound

Researchers at the Western Fisheries Research Center are working with other U.S. Geological Survey (USGS) Centers to better understand the interconnected roles of forage fishes throughout the ecosystem of Puget Sound, Washington. Support for these studies primarily is from the USGS Coastal Habitats in Puget Sound (CHIPS) program, which supports studies of the nearshore areas of Puget Sound. Human perturbations in the nearshore area such as shoreline armoring or urban development can affect the nearshore habitats critical to forage fish.

Washington↗