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At least 631 records · Page 35Linked to original sources

Evolution of a natural debris flow: In situ measurements of flow dynamics, video imagery, and terrestrial laser scanning

Many theoretical and laboratory studies have been undertaken to understand debris-flow processes and their associated hazards. However, complete and quantitative data sets from natural debris flows needed for confirmation of these results are limited. We used a novel combination of in situ measurements of debris-flow dynamics, video imagery, and pre- and postflow 2-cm-resolution digital terrain models to study a natural debris-flow event. Our field data constrain the initial and final reach morphology and key flow dynamics. The observed event consisted of multiple surges, each with clear variation of flow properties along the length of the surge. Steep, highly resistant, surge fronts of coarse-grained material without measurable pore-fluid pressure were pushed along by relatively fine-grained and water-rich tails that had a wide range of pore-fluid pressures (some two times greater than hydrostatic). Surges with larger nonequilibrium pore-fluid pressures had longer travel distances. A wide range of travel distances from different surges of similar size indicates that dynamic flow properties are of equal or greater importance than channel properties in determining where a particular surge will stop. Progressive vertical accretion of multiple surges generated the total thickness of mapped debris-flow deposits; nevertheless, deposits had massive, vertically unstratified sedimentological textures. ?? 2010 Geological Society of America.

Geology↗

An introduction to lesions and histology of scleractinian corals

Stony corals (Scleractinia) are in the Phylum Cnidaria (cnidae referring to various types of stinging cells). They may be solitary or colonial, but all secrete an external, supporting aragonite skeleton. Large, colonial members of this phylum are responsible for the accretion of coral reefs in tropical and subtropical waters that form the foundations of the most biodiverse marine ecosystems. Coral reefs worldwide, but particularly in the Caribbean, are experiencing unprecedented levels of disease, resulting in reef degradation. Most coral diseases remain poorly described and lack clear case definitions, while the etiologies and pathogenesis are even more elusive. This introductory guide is focused on reef-building corals and describes basic gross and microscopic lesions in these corals in order to serve as an invitation to other veterinary pathologists to play a critical role in defining and advancing the field of coral pathology.

Veterinary Pathology↗

A simple approach to modeling light attenuation in the Sacramento-San Joaquin Delta using commonly available data

The diffuse attenuation coefficient of photosynthetically active radiation (KdPAR) is commonly used to predict light attenuation in aquatic productivity models, but obtaining measurements of PAR to compute KdPAR is difficult. In situ calculations of KdPAR require multiple measurements of PAR through the water column, and these measurements are infeasible for real-time recording. Instead, predictive models using surface-water measurements may be used. Traditional KdPAR models are based on open-ocean habitats and rely on chlorophyll—as a proxy measurement for phytoplankton abundance—as the main predictive parameter. However, elevated suspended sediments and dissolved organic materials may also affect KdPAR values of inland water bodies and estuaries. In this study, we leverage KdPAR calculations derived from in situ light measurements collected along with surface-water-quality parameters across the Sacramento-San Joaquin River Delta in California, USA (the Delta). Sampling occurred between January of 2013 and May of 2014. We also explored regional and seasonal effects, but these did not clearly affect the model. Ultimately, the best-performing model included surface-level turbidity only (R2 = 0.91). The simplicity of the model facilitates use of KdPAR estimates for a variety of purposes throughout the Delta, including euphotic depth calculations, and as inputs to primary-productivity and habitat-suitability models. We demonstrate the model’s usability with two open-sources data sets (one spatially dense, and one temporally dense), and estimate KdPAR, euphotic depth, and primary productivity within the Delta. We provide calculations for each estimation, allowing users to easily adopt these models and apply them to their own data or with open-sourced data, which are abundant.

California↗

A mass balance mercury budget for a mine-dominated lake: Clear Lake, California

The Sulphur Bank Mercury Mine (SBMM), active intermittently from 1873–1957 and now a USEPA Superfund site, was previously estimated to have contributed at least 100 metric tons (10 5 kg) of mercury (Hg) into the Clear Lake aquatic ecosystem. We have confirmed this minimum estimate. To better quantify the contribution of the mine in relation to other sources of Hg loading into Clear Lake and provide data that might help reduce that loading, we analyzed Inputs and Outputs of Hg to Clear Lake and Storage of Hg in lakebed sediments using a mass balance approach. We evaluated Inputs from (1) wet and dry atmospheric deposition from both global/regional and local sources, (2) watershed tributaries, (3) groundwater inflows, (4) lakebed springs and (5) the mine. Outputs were quantified from (1) efflux (volatilization) of Hg from the lake surface to the atmosphere, (2) municipal and agricultural water diversions, (3) losses from out-flowing drainage of Cache Creek that feeds into the California Central Valley and (4) biotic Hg removal by humans and wildlife. Storage estimates include (1) sediment burial from historic and prehistoric periods (over the past 150–3,000 years) from sediment cores to ca. 2.5m depth dated using dichloro diphenyl dichloroethane (DDD), 210 Pb and 14 C and (2) recent Hg deposition in surficial sediments. Surficial sediments collected in October 2003 (11 years after mine site remediation) indicate no reduction (but a possible increase) in sediment Hg concentrations over that time and suggest that remediation has not significantly reduced overall Hg loading to the lake. Currently, the mine is believed to contribute ca. 322–331 kg of Hg annually to Clear Lake, which represents ca. 86–99% of the total Hg loading to the lake. We estimate that natural sedimentation would cover the existing contaminated sediments within ca. 150–300 years.

Water, Air, & Soil Pollution↗

Effects of tillage and application rate on atrazine transport to subsurface drainage: Evaluation of RZWQM using a six-year field study

Well tested agricultural system models can improve our understanding of the water quality effects of management practices under different conditions. The Root Zone Water Quality Model (RZWQM) has been tested under a variety of conditions. However, the current model's ability to simulate pesticide transport to subsurface drain flow over a long term period under different tillage systems and application rates is not clear. Therefore, we calibrated and tested RZWQM using six years of data from Nashua, Iowa. In this experiment, atrazine was spring applied at 2.8 (1990–1992) and 0.6 kg/ha/yr (1993–1995) to two 0.4 ha plots with different tillage (till and no-till). The observed and simulated average annual flow weighted atrazine concentrations (FWAC) in subsurface drain flow from the no-till plot were 3.7 and 3.2 μg/L, respectively for the period with high atrazine application rates, and 0.8 and 0.9 μg/L, respectively for the period with low application rates. The 1990–1992 observed average annual FWAC difference between the no-till and tilled plot was 2.4 μg/L while the simulated difference was 2.1 μg/L. These observed and simulated differences for 1993–1995 were 0.1 and 0.1 μg/L, respectively. The Nash–Sutcliffe model performance statistic (EF) for cumulative atrazine flux to subsurface drain flow was 0.93 for the no-till plot testing years (1993–1995), which is comparable to other recent model tests. The value of EF is 1.0 when simulated data perfectly match observed data. The order of selected parameter sensitivity for RZWQM simulated FWAC was atrazine partition coefficient > number of macropores > atrazine half life in soil > soil hydraulic conductivity. Simulations from 1990 to 1995 with four different atrazine application rates applied at a constant rate throughout the simulation period showed concentrations in drain flow for the no-till plot to be twice those of the tilled plot. The differences were more pronounced in the early simulation period (1990–1992), partly because of the characteristics of macropore flow during large storms. The results suggest that RZWQM is a promising tool to study pesticide transport to subsurface drain flow under different tillage systems and application rates over several years, the concentrations of atrazine in drain flow can be higher with no-till than tilled soil over a range of atrazine application rates, and atrazine concentrations in drain flow are sensitive to the macropore flow characteristics under different tillage systems and rainfall timing and intensity.

Agricultural Water Management↗

Hydrogeology of the Old Faithful area, Yellowstone National Park, Wyoming, and its relevance to natural resources and infrastructure

A panel of leading experts (The Old Faithful Science Review Panel) was convened by Yellowstone National Park (YNP) to review and summarize the geological and hydrological understanding that can inform National Park Service management of the Upper Geyser Basin area. We give an overview of present geological and hydrological knowledge of the Old Faithful hydrothermal (hot water) system and related thermal areas in the Upper Geyser Basin. We prioritize avenues for improving our understanding of key knowledge gaps that limit informed decision-making regarding human use in this fragile natural landscape. Lastly, we offer guidelines to minimize impacts to the hydrothermal system that could be used to aid decisions by park management. Old Faithful sits within the Upper Geyser Basin, an area of abundant hydrothermal activity where boiling waters extend from the surface to significant depth within glacial sediments and underlying volcanic rocks. The geyser systems are directly fed by waters recharged decades to millennia ago, which are surrounded by colder, younger waters. Activity of the geysers is controlled by complex subsurface plumbing with fractures and conduits separated by regions of low permeability. Observations over the past century indicate that the thermal areas and their features are both fragile and highly dynamic. Although Old Faithful has erupted regularly for the past 150 years, it exhibits changes in eruptive behavior over time, and the average interval between eruptions has increased by about 50 percent over the past 50 years. It is clear that human activity has modified the hydrothermal system in the past; conversely, natural features pose ongoing hazards to humans and human infrastructure. Current (2014) long-term programs to measure heat discharge by chloride-flux monitoring, and more recently by thermal-infrared imaging, are crucial for assessing the status of the hydrothermal system. Complementary studies could include airborne resistivity, environmental tracers, numerical modeling, and greater emphasis on measuring the discharge of water during geyser eruptions. Such data are needed to better understand the subsurface plumbing systems that feed the geysers. Further understanding can be gained through installation of shallow groundwater observation wells, surface geophysical studies, and direct measurement of temperature gradients near the surface. It also is critical to archive existing data from all studies in a manner that will be readily accessible to scientists and decision makers. Monitoring and data collection can be achieved through the YNP geology program, by direct funding to other groups, or by encouraging and facilitating externally funded research. There are many documented examples at YNP and elsewhere where human infrastructure and natural thermal features have negatively affected each other. Unless action is taken, human conflicts with the Old Faithful hydrothermal system are likely to increase over the coming years. This is partly because of the increase in park visitation over the past decades, but also because the interval between eruptions of Old Faithful has increased, lengthening the time spent (and services needed) for each visitor at Old Faithful. To avoid an increase in visitor impacts, the National Park Service should consider 2 alternate strategies to accommodate people, vehicles, and services in the Upper Geyser Basin, such as shuttle services from staging (parking and dining) areas with little or no recent hydrothermal activity. We further suggest that YNP consider a zone system to guide maintenance and development of infrastructure in the immediate Old Faithful area. A “red” zone includes hydrothermally active land where new development is discouraged and existing infrastructure is modified with great care. An outer “green” zone represents areas where cooler temperatures and less hydrothermal flow are thought to exist, and where development and maintenance could proceed as occurs elsewhere in the park. An intermediate “yellow” zone would require preliminary assessment of subsurface temperatures and gas concentrations to assess suitability for infrastructure development. The panel recommends that YNP management follow the lead of the National Park System Advisory Board Science Committee (2012) by applying the “precautionary principle” when making decisions regarding the interaction of hydrothermal phenomena and park infrastructure in the Old Faithful area and other thermal areas within YNP.

Wyoming↗

Generation of liquid water on Mars through the melting of a dusty snowpack

The possibility that snowmelt could have provided liquid water for valley network formation early in the history of Mars is investigated using an optical-thermal model developed for dusty snowpacks at temperate latitudes. The heating of the postulated snow is assumed to be driven primarily by the absorption of solar radiation during clear sky conditions. Radiative heating rates are predicted as a function of depth and shown to be sensitive to the dust concentration and the size of the ice grains while the thermal conductivity is controlled by temperature, atmospheric pressure, and bulk density. Rates of metamorphism indicate that fresh fine-grained snow on Mars would evolve into moderately coarse snow during a single summer season. Results from global climate models are used to constrain the mean-annual surface temperatures for snow and the atmospheric exchange terms in the surface energy balance. Mean-annual temperatures within Martian snowpacks fail to reach the melting point for all atmospheric pressures below 1000 mbar despite a predicted temperature enhancement beneath the surface of the snowpacks. When seasonal and diurnal variations in the incident solar flux are included in the model, melting occurs at midday during the summer for a wide range of snow types and atmospheric pressures if the dust levels in the snow exceed 100 ppmw (parts per million by weight). The optimum dust concentration appears to be about 1000 ppmw. With this dust load, melting can occur in the upper few centimeters of a dense coarse-grained snow at atmospheric pressures as low as 7 mbar. Snowpack thickness and the thermal conductivity of the underlying substrate determine whether the generated snow-melt can penetrate to the snowpack base, survive basal ice formation, and subsequently become available for runoff. Under favorable conditions, liquid water becomes available for runoff at atmospheric pressures as low as 30 to 100 mbar if the substrate is composed of regolith, as is expected in the ancient cratered terrain of Mars.

Icarus↗

Precision and relative effectiveness of a purse seine for sampling age-0 river herring in lakes

Stock assessments for anadromous river herring, collectively Alewife Alosa pseudoharengus and Blueback Herring A. aestivalis , lack adequate demographic information, particularly with respect to early life stages. Although sampling adult river herring is increasingly common throughout their range, currently no standardized, field‐based, analytical methods exist for estimating juvenile abundance in freshwater lakes. The objective of this research was to evaluate the relative effectiveness and sampling precision of a purse seine for estimating densities of age‐0 river herring in freshwater lakes. We used a purse seine to sample age‐0 river herring in June–September 2015 and June–July 2016 in 16 coastal freshwater lakes in the northeastern USA. Sampling effort varied from two seine hauls to more than 50 seine hauls per lake. Catch rates were highest in June and July, and sampling precision was maximized in July. Sampling at night (versus day) in open water (versus littoral areas) was most effective for capturing newly hatched larvae and juveniles up to ca. 100 mm TL. Bootstrap simulation results indicated that sampling precision of CPUE estimates increased with sampling effort, and there was a clear threshold beyond which increased effort resulted in negligible increases in precision. The effort required to produce precise CPUE estimates, as determined by the CV, was dependent on lake size; river herring densities could be estimated with up to 10 purse‐seine hauls (one‐two nights) in a small lake (<50 ha) and 15–20 hauls (two‐three nights) in a large lake (>50 ha). Fish collection techniques using a purse seine as described in this paper are likely to be effective for estimating recruit abundance of river herring in freshwater lakes across their range.

North American Journal of Fisheries Management↗

Evaluating the potential for remote bathymetric mapping of a turbid, sand-bed river: 1. Field spectroscopy and radiative transfer modeling

Remote sensing offers an efficient means of mapping bathymetry in river systems, but this approach has been applied primarily to clear-flowing, gravel bed streams. This study used field spectroscopy and radiative transfer modeling to assess the feasibility of spectrally based depth retrieval in a sand-bed river with a higher suspended sediment concentration (SSC) and greater water turbidity. Attenuation of light within the water column was characterized by measuring the amount of downwelling radiant energy at different depths and calculating a diffuse attenuation coefficient, K d . Attenuation was strongest in blue and near-infrared bands due to scattering by suspended sediment and absorption by water, respectively. Even for red wavelengths with the lowest values of K d , only a small fraction of the incident light propagated to the bed, restricting the range of depths amenable to remote sensing. Spectra recorded above the water surface were used to establish a strong, linear relationship ( R 2 = 0.949) between flow depth and a simple band ratio; even under moderately turbid conditions, depth remained the primary control on reflectance. Constraints on depth retrieval were examined via numerical modeling of radiative transfer within the atmosphere and water column. SSC and sensor radiometric resolution limited both the maximum detectable depth and the precision of image-derived depth estimates. Thus, although field spectra indicated that the bathymetry of turbid channels could be remotely mapped, model results implied that depth retrieval in sediment-laden rivers would be limited to shallow depths (on the order of 0.5 m) and subject to a significant degree of uncertainty.

Water Resources Research↗

The 3D Elevation Program: summary of program direction

The 3D Elevation Program (3DEP) initiative responds to a growing need for high-quality topographic data and a wide range of other three-dimensional representations of the Nation's natural and constructed features. The National Enhanced Elevation Assessment (NEEA), which was completed in 2011, clearly documented this need within government and industry sectors. The results of the NEEA indicated that enhanced elevation data have the potential to generate $13 billion in new benefits annually. The benefits apply to food risk management, agriculture, water supply, homeland security, renewable energy, aviation safety, and other areas. The 3DEP initiative was recommended by the National Digital Elevation Program and its 12 Federal member agencies and was endorsed by the National States Geographic Information Council (NSGIC) and the National Geospatial Advisory Committee (NGAC).

Fact Sheet↗

Use of set blanks in reporting pesticide results at the U.S. Geological Survey National Water Quality Laboratory, 2001-15

Executive Summary Background .—Pesticide results from the U.S. Geological Survey (USGS) National Water Quality Laboratory (NWQL) are used for water-quality assessments by many agencies and organizations. The USGS is committed to providing data of the highest possible quality to the consumers of its data. A cooperator’s inquiries about specific pesticide detections in water revealed potential laboratory contamination issues for some results. Consequently, the USGS conducted an extensive evaluation of potential low-level contamination related to processing or analysis of water-quality samples at NWQL for 21 pesticide compounds of interest to the cooperator. This is the most comprehensive study of NWQL pesticide quality-control (QC) results to date. Purpose and scope .—The purpose of this study was to document protocols used by the NWQL to censor pesticide results and to determine the effects of laboratory contamination—as determined from detections in laboratory set blanks—on pesticide detections in groundwater and surface-water samples. More than 30,000 pesticide results from 113 selected batches of samples (2 percent or less of total batches) analyzed by the NWQL during the 15 years from 2001 to 2015 were reviewed. All laboratory results from the selected batches, including results from environmental (surface water and groundwater) and QC (set-blank, blind-blank, and blind-spike) samples, were evaluated. The study includes results for 21 pesticide compounds analyzed in groundwater and surface-water samples collected across the United States. Eleven pesticide compounds were analyzed by a gas chromatography/mass spectrometry method and 10 compounds by a liquid chromatography/mass spectrometry method. Objectives and methods .—The objectives of this study were to (1) determine the characteristics of laboratory contamination over time, (2) compare distributions of pesticide results in set blanks with distributions in environmental samples, (3) evaluate the potential for false-positive and false-negative reporting of results, and (4) evaluate the effects of reevaluating historical pesticide results using 2017 compound identification protocols on detections of pesticides in groundwater and surface-water samples. The 113 instrument batches selected for this study contained detections of one or more of the 21 pesticide compounds in set blanks or were among those batches with the highest pesticide detection frequencies in set blanks. As a result, the dataset for this study was targeted toward pesticides and batches with laboratory contamination. The objectives were addressed by statistically comparing environmental and set-blank results; computing moving averages of set-blank detection frequencies to identify periods of episodic contamination; and using summary statistics, tabular summaries, and graphical approaches, such as time-series plots and cumulative distribution functions. Results .— Objective 1 : Laboratory contamination, as determined by pesticide detections in set blanks, was found in 13 percent of set-blank results from the 113 targeted batches included in this study (as compared to 6 percent of set-blank results from all 7,620 batches analyzed during the study period). It is estimated that 92 percent of the laboratory contamination during the study period was episodic, meaning that it occurred during discrete periods of time. All 21 of the targeted pesticide compounds had periods of episodic contamination, with most episodes ranging in duration from about 1 to 8 months. The remaining 8 percent of laboratory contamination was random or from a known source (deterministic). Objective 2 : For some compounds, graphs of cumulative distribution functions of the entire distributions of set-blank and environmental samples overlap, suggesting that there is no difference in the distributions of the two types of samples. However, time-series graphs show that detections in set blanks often occur at different times (sometimes separated by years) than detections in environmental samples, indicating clear differences in those distributions, and indicating the importance of evaluating the timing of detections in all sample types. For most compounds detected in set-blank and environmental samples, detection frequencies were significantly greater in set blanks than in groundwater or surface-water samples ( p <0.05). There are several explanations for this finding, including that the 113 batches of samples chosen for this study targeted batches with detections in set blanks or that detections in set-blank samples were historically determined with less stringent identification criteria than for environmental samples (groundwater and surface-water samples). Objective 3 : The false-positive and false-negative rates from blind samples submitted during the study period by the USGS Quality Systems Branch generally were less than 1 and 5 percent, respectively, for the 21 pesticides. The only compound with a false-positive rate greater than 1 percent was flumetsulam (2.6 percent), indicating that there is a higher likelihood of flumetsulam being reported as a detection when it is not present in an environmental sample compared with the reporting of other compounds. Objective 4 : Altogether, for data in targeted batches, NWQL would have reported 0.1 percent of results from groundwater samples and 1.4 percent of results from surface-water samples differently if 2017 identification protocols were applied to historical pesticide results. In most of these cases, detections observed in historical results would change to nondetections. The small percentages of changes that would occur if historical data were reevaluated indicate that historical protocols used by the NWQL to identify detections in environmental samples were robust and produced results that are predominantly consistent with current [2017] practices. Conclusions .—The NWQL produces high-quality pesticide results at environmentally relevant concentrations. NWQL identification protocols and censoring practices are largely effective at minimizing the reporting of false-positive and false-negative results. Laboratory contamination, when it occurred, tended to occur in episodes; thus, evaluating the timing and magnitude of detections in set blanks relative to detections in environmental samples was determined to be an important consideration for analysis of environmental results. Because NWQL censoring practices do not address all types and occurrences of laboratory contamination, options for additional censoring practices are provided for data users with more specific or stringent data-quality objectives. The methods used to analyze the 21 compounds for this report can similarly be applied to all 173 pesticide compounds that were analyzed by the NWQL during the same time period. This study also has helped to identify potential improvements in reporting USGS data, such as conducting more frequent review of set-blank datasets.

Scientific Investigations Report↗

Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon

Phytoplankton populations in the Tualatin River in northwestern Oregon are an important component of the dissolved oxygen (DO) budget of the river and are critical for maintaining DO levels in summer. During the low-flow summer period, sufficient nutrients and a long residence time typically combine with ample sunshine and warm water to fuel blooms of cryptophyte algae, diatoms, green and blue-green algae in the low-gradient, slow-moving reservoir reach of the lower river. Algae in the Tualatin River generally drift with the water rather than attach to the river bottom as a result of moderate water depths, slightly elevated turbidity caused by suspended colloidal material, and dominance of silty substrates. Growth of algae occurs as if on a “conveyor belt” of streamflow, a dynamic system that is continually refreshed with inflowing water. Transit through the system can take as long as 2 weeks during the summer low-flow period. Photosynthetic production of DO during algal blooms is important in offsetting oxygen consumption at the sediment-water interface caused by the decomposition of organic matter from primarily terrestrial sources, and the absence of photosynthesis can lead to low DO concentrations that can harm aquatic life. The periods with the lowest DO concentrations in recent years (since 2003) typically occur in August following a decline in algal abundance and activity, when DO concentrations often decrease to less than State standards for extended periods (nearly 80 days). Since 2003, algal populations have tended to be smaller and algal blooms have terminated earlier compared to conditions in the 1990s, leading to more frequent declines in DO to levels that do not meet State standards. This study was developed to document the current abundance and species composition of phytoplankton in the Tualatin River, identify the possible causes of the general decline in algae, and evaluate hypotheses to explain why algal blooms diminish in midsummer. Plankton and water-quality sample data from 2006 to 2008 were combined with parts of a larger discrete-sample and continuous water-quality monitoring dataset and examined to identify patterns in water-quality and algal conditions since 1991, with a particular emphasis on 2003–08. Longitudinal plankton surveys were conducted in 2006–08 at six sites between river miles (RM) 24.5 and 3.4 at 2- to 3-week intervals, or 5–6 per season, and in-situ bioassay experiments were conducted in 2008 to examine the potential effects of wastewater treatment facility (WWTF) effluent and phosphorus additions on phytoplankton biomass and algal photosynthesis. Phytoplankton and zooplankton community composition, streamflow, and water-quality data were analyzed using multivariate statistical techniques to gain insights into plankton dynamics to determine what factors might be most tied to the abundance and characteristics of the phytoplankton assemblages, and identify possible causes of their declines. The connection between low-DO events and algal declines was clearly evident, as bloom crashes were nearly always followed by periods of low DO. Algal blooms occurred each year during 2006–08, producing maximum chlorophyll-a (Chl-a) values in June or July generally in the range of 50–80 micrograms per liter (µg/L). Bloom crashes and absence of sufficient algal photosynthesis in mid- to late-summer contributed to minimum DO concentrations that were less than the State standard of 6.5 milligrams per liter (mg/L) based on the 30-day mean daily concentration, for 62–74 days each year. At times, the absolute minimum State standard (4 mg/L DO) also was not met. To learn more about why low-DO events occurred, specific algal declines during 2003–08 were scrutinized to determine their likely causal factors. From this information, a series of hypotheses were formulated and evaluated in terms of their ability to explain recent declines in algal populations in the river in late summer. Meteorological, streamflow, turbidity, water temperature, and conductance conditions in the Tualatin River during the 2006–08 summer seasons were not atypical. Natural flow comprised the majority (70–80 percent) of flow each year during spring, but then reduced to 38–40 percent during midsummer when WWTF effluent—which contributed as much as 36 percent—and flow augmentation releases comprised a greater fraction of the flow. Summer 2008 was unusual, however, in the prolonged influence from the Wapato Lake agricultural area near Gaston in the upper part of the basin. The previous winter flooding and levee breach at Wapato Lake caused a much greater area of inundation. As a result, drainage from this area continued into July, much later than normal. A subsequent algal bloom in Wapato Lake then seeded the upper Tualatin River, and this drainage had a profound effect on the downstream plankton community. A large blue-green algae bloom developed—the largest in recent memory—prompting a public health advisory for recreational contact for about two weeks. Algal growths and surface blooms are a common feature of the Tualatin River. Most of the dominant algae have growth forms and morphologies that are well suited for planktonic life, employing spines and gas vacuoles to resist settling, forming colonies, and producing mucilage (or toxins) to resist zooplankton grazing. In 2006–08, 143 algal taxa were identified in 117 main-stem samples; diatoms and green algae were more diverse than blue-green, golden, and cryptophyte algae, although these later groups sometimes dominated the overall volumetric abundance (biovolume). The most frequently occurring taxa, occurring in 97–99 percent of samples, were flagellated cryptophytes Cryptomonas erosa and Rhodomonas minuta. Other important algal taxa included centric diatoms Stephanodiscus, Cyclotella, and Melosira species and colonial green algae Scenedesmus and Actinastrum. These taxa comprised the majority of the algal biovolume during much of the growing season. A general seasonal trend in the phytoplankton assemblages was observed, with dominance by filamentous centric diatoms Stephanodiscus and Melosira in spring and early summer, and flagellated cryptophytes and green algae, particularly Chlamydomonas sp., in late-summer; or, in 2008, dominance by blue-green algae Anabaena flos-aquae and Aphanizomenon flos-aquae during the Wapato Lake bloom event. There were 99 zooplankton taxa identified from the Tualatin River in 2006–08, composed primarily of cladocerans, copepods, and rotifers. A seasonal increase in zooplankton abundance was observed in early summer just as or shortly after the phytoplankton population began to increase, with populations growing to 15,000−120,000 organisms per cubic meter in the lower river. Zooplankton abundance showed a predictable and distinct longitudinal downstream increase, particularly downstream of Highway 99W (RM 11.6). Although grazing rates were not measured, the data suggest that, at times, zooplankton grazing may affect algal abundance and species composition in the Tualatin River, with diatoms becoming relatively less abundant and flagellated cryptophytes and green algae relatively more abundant during periods when zooplankton densities were highest. Multivariate statistical analyses identified soluble reactive phosphorus (SRP), natural flow, flow augmentation, and WWTF effluent as important factors influencing Tualatin River phytoplankton populations, with zooplankton density (particularly rotifers and copepods), specific conductance, chloride, and water temperature also having an important influence. Although SRP was highly correlated with the plankton communities, that correlation was likely the result of high or low algal activity (uptake) as SRP concentrations were often reduced to low levels during blooms. While previous studies have already established that phosphorus, among other factors such as flow, places a theoretical cap on the size of the phytoplankton population in the river, sometimes algal declines occur when SRP concentrations are apparently sufficient. To identify alternative causal factors, additional analyses were performed without SRP to focus on other water-quality parameters, zooplankton density, and flow factors. Considering data for all 3 years and including just those samples from the lower Tualatin River not affected by the 2008 Wapato Lake drainage event, three factors (percentage of reservoir flow augmentation, total natural flow, and rotifer density) best explained variations in the phytoplankton assemblages. Analyses focusing on the possible causes of algal declines included the above multivariate analyses, scrutiny of 10 specific instances of declines in algal populations during 2003–08 including several bloom–crash sequences, and analyses of historic routine watershed monitoring data from Clean Water Services. Six factors were hypothesized to be important in causing bloom crashes or impeding blooms from rebounding in August: (1) light limitation from cloudy weather, (2) a reduction in the plankton inocula or “seed” entering the lower river from upstream sources, (3) increased summer streamflows, (4) changes in the dominant sources of flow as the percentage of flow augmentation and WWTF discharges have increased, (5) zooplankton grazing, and (6) low concentrations of bioavailable phosphorus (<0.015 milligram per liter). All of these hypotheses are supported in some fashion by the available data and statistical analyses. Zooplankton grazing, short-term declines in photosynthesis from cloudy weather, total flow as it affects residence time, and the dominant source of flow are primary factors responsible for the low-DO events caused by declines in algae in the lower Tualatin River during late summer. Cloudy weather and increased turbidity are known to inhibit algal growth in the Tualatin River, and slight increases in turbidity in recent years may be a problem. Upstream sources of algae are critical in determining the characteristics and size of downstream populations, as illustrated by the Wapato Lake bloom in 2008, but more data are needed from upstream to fully define the importance of this connection. The sources of flow, through their differential contribution of plankton inocula (quality and amount), were, at times, important factors affecting phytoplankton populations. While SRP concentrations were often most highly correlated with phytoplankton species community, the bioavailability of phosphorus is still somewhat unknown and there are several sources to consider. Preliminary bioassay tests suggested that while treated wastewater effluent may stimulate algae at 30 percent concentrations, negative effects (or decreased stimulation) on Chl-a and DO production may occur at concentrations of 50 percent. Targeted data collection and future research will be needed to further understand the importance of these factors on Tualatin River phytoplankton. While the data and analysis completed for this report provide insights into future research and monitoring that would be useful to continue, additional monitoring of turbidity, Chl-a, and plankton abundance and species composition in the upper part of the basin would enhance our understanding of plankton dynamics and factors affecting phytoplankton abundance in the lower river. Assessment of the key upstream sources of algal inocula via surveys of the major flow sources as well as tributaries and wetlands would provide useful information for the management of river water quality. Other studies that could prove useful for developing management strategies include targeted experiments to evaluate the bioavailability of phosphorus from a variety of sources. New research on phytoplankton–zooplankton interactions, and studies of planktivorous fish, might also provide insight about food web dynamics and potential “top-down” effects of fish predation on the plankton communities. In addition, further development of neural-network or other water-quality models would help to evaluate management strategies and provide forecasts of water-quality conditions. Finally, periodic future reassessments of the available data with the multivariate statistical tools used in this study would be helpful to assess whether and how plankton communities are changing, and to continue to shed light on the importance of factors shaping the plankton. Although certain types and sizes of algal blooms are undesirable, minimum phytoplankton populations are an important part of aquatic food webs and are needed to maintain healthy levels of DO in the river. By understanding the sources, characteristics, causal factors, and responses of the plankton communities, management strategies can be developed to improve DO conditions in the lower Tualatin River during the important summer low-flow period.

Oregon↗

Identification of amoebae implicated in the life cycle of Pfiesteria and Pfiesteria-like dinoflagellates

This study was undertaken to assess whether amoebae commonly found in mesohaline environments are in fact stages in the life cycles of Pfiesteria and Pfiesteria-like dinoflagellates. Primary isolations of amoebae and dinoflagellates were made from water and sediment samples from five tributaries of the Chesapeake Bay. Additional amoebae were also cloned from bioassay aquaria where fish mortality was attributed to Pfiesteria . Electron microscopy and small subunit (SSU) rRNA gene sequence analysis of these isolates clearly demonstrated that the commonly depicted amoeboid form of Pfiesteria is very likely a species of Korotnevella and is unrelated to Pfiesteria or Pfiesteria -like dinoflagellates. We have determined that the Pfiesteria and Pfiesteria -like dinoflagellates examined in this study undergo a typical homothallic life cycle without amoeboid stages. Furthermore, we have demonstrated that cloned amoebae sharing morphological characteristics described for stages in the life cycle of Pfiesteria do not transform into dinozoites. The strict clonal isolation and cultivation techniques used in this study substantially support the conclusion that the amoebae and some of the flagellates depicted in the life cycle of Pfiesteria are environmental contaminants of the Pfiesteria culture system and that the Ambush Predator Hypothesis needs to be rigorously reevaluated.

Maryland, Virginia↗

Age constraints on Jerritt Canyon and other Carlin-type gold deposits in the western United States-relationship to mid-Tertiary extension and magmatism

Carlin-type gold deposits are difficult to date and a wide range of ages has been reported for individual deposits. Therefore, several methods were employed to constrain the age of the gold deposits in the Jerritt Canyon district. Dated igneous rocks with well-documented crosscutting relationships to ore provided the most reliable constraints. K/Ar and 40 Ar/ 39 Ar dates on igneous rocks are as follows: andesite dikes 324 Ma, sericitic alteration in andesite dikes 118 Ma, basalt dikes 40.8 Ma, quartz monzonite dikes 39.2 Ma, and calc-alkaline ignimbrites 43.1 to 40.1 Ma. Of these, only the andesite and basalt dikes are clearly altered and mineralized. The gold deposits are, therefore, younger than the 40.8 Ma basalt dikes. The sericitic alteration in the andesite dikes is unrelated to the gold deposits. A number of dating techniques did not work. K/Ar and 40 Ar/ 39 Ar dates on mica from mineralized Ordovician to Devonian sedimentary rocks gave misleading results. The youngest date of 149 Ma from the smallest <0.1-mu m-size fraction shows that the temperature (120 degrees -260 degrees C) and duration (?) of hydrothermal activity was insufficient to reset preexisting fine-grained micas in the host rocks. The temperature and duration was also insufficient to anneal fission tracks in zircon from Ordovician quartzites as they yield Middle Proterozoic dates in both mineralized and barren samples. Apatites were too small for fission track dating. Hydrothermal sulfides have pronounced crustal osmium isotope signatures ( 187 Os/ 188 Os initial = 0.9-3.6) but did not yield a meaningful isochron due to very low Re and Os concentrations and large analytical uncertainties. Paleomagnetic dating techniques failed because the hydrothermal fluids sulfidized nearly all of the iron in the host rocks leaving no remnant magnetism.When published isotopic dates from other Carlin-type deposits in Nevada and Utah are subject to the rigorous evaluation developed for the Jerritt Canyon study, most deposits can be shown to have formed between 42 and 30 Ma. K/Ar and 40 Ar/ 39 Ar dates on the youngest preore igneous rocks range from 41 to 32 Ma, whereas the oldest postore igneous rocks range from 35 to 33 Ma. Hydrothermal adularia from the Twin Creeks deposit yields similar 40 Ar/ 39 Ar dates of 42 Ma. K/Ar dates on supergene alunite range from 4 to 30 Ma. K/Ar and 40 Ar/ 39 Ar dates on micas separated from sedimentary (395-43 Ma) and igneous (145-38 Ma) rocks are usually much older than the gold deposits and most are suspect because they are from incompletely reset preore micas or from mixtures of preore and ore-stage mica. Fission track dates on zircons are also generally older than the deposits (169-35 Ma) and are not completely reset by mineralization. Apatites are likley to be reset by the hydrothermal systems (and by younger thermal events) and yield dates (83-22 Ma) that are younger than those from zircon. Independent support of a mid-Tertiary age is provided by the low delta D (sub H 2 O) values of hydrothermal fluids from 10 widely separated Carlin-type deposits (-134 + or - 23ppm). The low delta D (sub H 2 O) values are consistent with a mid-Tertiary age when the climate was cool but are inconsistent with the Cretaceous and Jurassic ages favored by some workers when the climate was warm. The age and distribution of Carlin-type deposits coincides with areas that underwent extension and calc-alkaline magmatism over the same time period. Despite this relationship, the deposits lack clear spatial or genetic relationships to mid-Tertiary epizonal plutons. Rather, many deposits are localized along preexisting crustal fault zones. In the Getchell trend, structures tapped deep-sourced metamorphic (or magmatic) fluids and subsequently variably exchanged meteoric water. In the other trends and districts only variably exchanged meteoric water has been detected. These relationships suggest either that all of the deposits formed from deep-sourced fluids and were subsequently flooded by meteoric water, or, that fluids from different sources evolved to produce deposits with similar charateristics.

Economic Geology↗

Questa baseline and pre-mining ground-water quality investigation. 1. Depth to bedrock determinations using shallow seismic data acquired in the Straight Creek drainage near Red River, New Mexico

In late May and early June of 2002, the U.S. Geological Survey (USGS) acquired four P-wave seismic profiles across the Straight Creek drainage near Red River, New Mexico. The data were acquired to support a larger effort to investigate baseline and pre-mining ground-water quality in the Red River basin (Nordstrom and others, 2002). For ground-water flow modeling, knowledge of the thickness of the valley fill material above the bedrock is required. When curved-ray refraction tomography was used with the seismic first arrival times, the resulting images of interval velocity versus depth clearly show a sharp velocity contrast where the bedrock interface is expected. The images show that the interpreted buried bedrock surface is neither smooth nor sharp, but it is clearly defined across the valley along the seismic line profiles. The bedrock models defined by the seismic refraction images are consistent with the well data.

New Mexico↗

Atmospheric transport of pesticides in the Sacramento, California, metropolitan area, 1996-1997

Weekly composite, bulk air was sampled with respect to wind speed and direction from January 1996 through December 1997 in one urban and two agricultural locations in Sacramento County, California. The sampling sites were located along a north-south transect, the dominant directions of the prevailing winds. The samples were analyzed for a variety of current-use pesticides, including dormant orchard spray insecticides and rice herbicides. A variety of pesticides were detected throughout the year, predominantly chlorpyrifos, diazinon, and trifluralin. The data obtained during the winter and spring suggest that some pesticides used in agricultural areas become airborne and may be transported into the urban area. Confirmation of this drift is difficult, however, because these three predominant pesticides, as well as other detected pesticides, also are heavily used in the urban environment. The spring data clearly show that molinate and thiobencarb, two herbicides used only in rice production, do drift into the urban environment.

Water-Resources Investigations Report↗

Hydrologic budget of the late Oligocene Lake Creede and the evolution of the upper Rio Grande drainage system

The filling history, hydrologic budget, and geomorphic development of ancient Lake Creede and its tributary basin are evaluated to determine the factors that controlled its character. The lake filled the Creede caldera that formed in the late Oligocene as a consequence of the eruption of the Snowshoe Mountain Tuff. The caldera's sedimentary fill accumlated to a depth of about 1.26 km and had a volume of about 89 km 3 . The highest lake level was ~3300 m (10,800 ft) present altitude before it drained eastward across a broad volcanic plateau as the ancestral Rio Grande. A tributary canyon several hundred meters deep was cut into hard rhyolite in the north wall of the caldera before the lake was more than half full; its presence demonstrates that ancient Lake Creede filled slowly and thus occupied a long-lived, closed basin. The slow filling rate is incompatible with the present water flux through the Creede caldera basin, because such a flow would fill the basin geologically instantaneously. This mismatch, together with the recognition that the Oligocene climate was similar to that of today, forces the reexamination of the hydrologic and geomorphic history of the caldera. That appraisal shows that the caldera cannot have resurged rapidly immediately after caldera collapse, and that ancient watershed must have been lass than half as large as the present upper Rio Grande basin. The ancient lake had a more or less constant surface area of about 200 km 2 that approximated a steady-state condition between inflow and evaporation. Although the lake level fluctuated with climatic variations, its surface elevation steadily climbed as sediment accumulated, accelerating as resurgance and dome growth usurped spacewithin the basin. It could have had one playa stage early in its development and another after the basin had nearly filled with sediment, but there is no direct evidence for either. At least the lower half of the sedimentary column (the part sampled by the scientific drilling) formed in an euxinic environment. This argues against a persistent early playa, although evaporative accumulation of brine was inevitable. When the rate of resurgance was rapid relative to sedimentary infilling, the lake would have been deep (i.e., bordered by bedrock rather than sedimentary fans). The geomorphic evolution of the Creede caldera and its watershed tracks a two-phase topographic history, the first the Oligocene through Miocene, and the second for Pliocene to the recent. In Oligocene time, the San Juan volcanic field was a hydrologically immature, gently undulating, and outward sloping, constructional volcanic plateau straddling the ancient Continental Divide. West of the Creede caldera, a dendritic drainage discharged northeastward into ancestral Cebolla Creek (a tributary of the ancestral Gunnison River) through an early stage of the Clear Creek graben in the vicinity of Spring Creek Pass. Miocene basalt choked, but did not reconstruct, the drainage. By the end of Miocene time a mature topography of moderate relief developed, exposing some of the higher ores in the Creede district to weathering. In the late Miocene-early Pliocene time the San Juan Mountains were uplifted and titled eastward; the ancestral Rio Grande was revitalized and cut deeply into the older terrain, excavating much of the accessible sediment from the moat of the Creede caldera and exposing successively lowe levels in the Creede district to oxidation. Simultaneously, the southeast end of the Clear Creek graben was reactivated and breached the southwest wall of the Creede caldera. The rejuvenated Rio Grande captured the formerly northeast-directed headwaters of ancestral Cebolla Creek, shifting more than 1000 km 2 from the Pacific-directed drainage to the Atlantic. The water budget for ancient Lake Creede was strictly limited by the early stages of the fist geomorphic cycle; the modern water budget is the product of the second cycle.

Colorado↗

Water-level altitudes 2016 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973–2015 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas

Most of the land-surface subsidence in the Houston-Galveston region, Texas, has occurred as a direct result of groundwater withdrawals for municipal supply, commercial and industrial use, and irrigation that depressured and dewatered the Chicot and Evangeline aquifers, thereby causing compaction of the aquifer sediments, mostly in the fine-grained silt and clay layers. This report, prepared by the U.S. Geological Survey in cooperation with the Harris-Galveston Subsidence District, City of Houston, Fort Bend Subsidence District, Lone Star Groundwater Conservation District, and Brazoria County Groundwater Conservation District, is one in an annual series of reports depicting water-level altitudes and water-level changes in the Chicot, Evangeline, and Jasper aquifers and measured cumulative compaction of subsurface sediments in the Chicot and Evangeline aquifers in the Houston-Galveston region. The report contains regional-scale maps depicting approximate 2016 water-level altitudes (represented by measurements made during December 2015–March 2016) for the Chicot, Evangeline, and Jasper aquifers; maps depicting 1-year (2015–16) water-level changes for each aquifer; maps depicting approximate contoured 5-year (2011–16) water-level changes for each aquifer; maps depicting approximate contoured long-term (1990–2016 and 1977–2016) water-level changes for the Chicot and Evangeline aquifers; a map depicting approximate contoured long-term (2000–16) water-level changes for the Jasper aquifer; a map depicting locations of borehole-extensometer sites; and graphs depicting measured long-term cumulative compaction of subsurface sediments at the extensometers during 1973–2015. Tables listing the water-level data used to construct each water-level map for each aquifer and the measured long-term cumulative compaction data for each extensometer site are included. Graphs depicting water-level measurement data also are included; these graphs can be used to approximate changes in effective stress caused by changes in groundwater withdrawal from the Chicot and Evangeline aquifers. In 2016, water-level-altitude contours for the Chicot aquifer ranged from 200 feet (ft) below the vertical datum (North American Vertical Datum of 1988; hereinafter, datum) in a localized area in northwestern Harris County to 200 ft above datum in west-central Montgomery County. Water-level changes during 2015–16 in the Chicot aquifer ranged from a 39-ft decline to a 26-ft rise. Contoured 5-year and long-term changes in water-level altitudes of the Chicot aquifer ranged from a 30-ft decline to a 20-ft rise (2011–16), from a 140-ft decline to a 160-ft rise (1990–2016), and from a 120-ft decline to a 200-ft rise (1977–2016). In 2016, water-level-altitude contours for the Evangeline aquifer ranged from 250 ft below datum in three separate areas in south-central Montgomery County and extending into north-central Harris County, in west-central Harris County, and in southwestern Harris County to 200 ft above datum in southeastern Grimes and northwestern Montgomery Counties. Water-level changes during 2015–16 in the Evangeline aquifer ranged from a 65-ft decline to a 61-ft rise. Contoured 5-year and long-term changes in water-level altitudes of the Evangeline aquifer ranged from a 60-ft decline to a 40-ft rise (2011–16), from a 160-ft decline to a 160-ft rise (1990–2016), and from a 320-ft decline to a 240-ft rise (1977–2016). In 2016, water-level-altitude contours for the Jasper aquifer ranged from 200 ft below datum in south-central Montgomery County extending into north-central Harris County to 250 ft above datum in northwestern Montgomery County and extending into eastern Grimes County and southwestern Walker County. Water-level changes during 2015–16 in the Jasper aquifer ranged from a 38-ft decline to a 51-ft rise. Contoured 5-year and long-term changes in water-level altitudes of the Jasper aquifer ranged from a 60-ft decline to a 40-ft rise (2011–16) and from a 220-ft decline to a 20-ft decline (2000–16). Compaction of subsurface sediments (mostly in the fine-grained silt and clay layers) in the Chicot and Evangeline aquifers was recorded continuously by using 13 extensometers at 11 sites that were either activated or installed between 1973 and 1980. During the period of record beginning in 1973 (or later depending on activation or installation date) and ending in December 2015, measured cumulative compaction at the 13 extensometers ranged from 0.095 ft at the Texas City-Moses Lake extensometer to 3.666 ft at the Addicks extensometer. From January through December 2015, the Northeast, Southwest, Addicks, Johnson Space Center, and Clear Lake (deep) extensometers recorded net decreases in land-surface elevation, but the Lake Houston, East End, Texas City-Moses Lake, Baytown C–1 (shallow), Baytown C–2 (deep), Seabrook, Clear Lake (shallow), and Pasadena extensometers recorded net increases in land-surface elevation. For the 11 extensometer sites during the selected years 1988, 1998, 2008, 2012, and 2015, the smallest effective stress (20.12 pounds per square inch [psi]) was estimated at the Texas City-Moses Lake extensometer site and was produced by a measured water level of 46.42 ft below land-surface datum (blsd) in January 2008. The corresponding net compaction during 2007 at this site was 0.001 ft. The largest effective stress (174.86 psi) was estimated at the Addicks extensometer site and was produced by a measured water level of 403.38 ft blsd in January 1998. The corresponding net compaction at the Addicks site was 0.067 ft in 1997. The 2011 drought caused water-level declines in the aquifers that were documented by the water-level-measurement data collected in January 2012. During the 2011 drought, the 13 extensometers recorded varying amounts of compaction that ranged from a net compaction value of 0.002 ft recorded by the Texas City-Moses Lake extensometer to a net compaction value of 0.192 ft recorded by the Pasadena extensometer. Water-level data for 1988, 1998, 2008, 2012, and 2015 and the corresponding net compaction values recorded by the extensometers for 1987, 1997, 2007, 2011, and 2014 were used to illustrate the cause and effect relations between changes in water level caused by groundwater withdrawals and resulting changes in effective stress. Changes in effective stress are related to changes in land-surface elevations caused by compaction of the fine-grained sediments composing the Chicot and Evangeline aquifers. The rate of compaction varies from site to site because of differences in rates of groundwater withdrawal in the areas adjacent to each extensometer site; differences among sites in the ratios of sand, silt, and clay and their corresponding compressibilities; and previously established preconsolidation heads. It is not appropriate, therefore, to extrapolate or infer a rate of compaction for an adjacent area on the basis of the rate of compaction recorded by proximal extensometers.

Texas↗