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Geochemistry of Florida Bay sediments: Nutrient history at five sites in eastern and central Florida Bay

Recent seagrass dieoff and massive microalgal blooms have focused attention on the health of the Florida Bay ecosystem. Changes in nutrient input and the nutrient dynamics of Florida Bay are hypothesized to be linked to these problems, but crucial baseline information is still lacking. Efforts to restore Florida Bay to its natural condition will require information on the nutrient history of the bay. The purpose of this study was to examine distributions of organic C, total N, and total P in carbonate sediments from sites of continuous and known sedimentation rate (210Pb and 137Cs dated), in eastern and central Florida Bay. These sediments provide a record of historical changes in the C, N, and P load to the eastern and central bay. Analyses were conducted on sediments from cores collected at five sites, and on buried seagrass fragments at two sites. At three of the sites, sediments from seagrass-covered and adjacent barren areas were examined to determine differences in sedimentary geochemistry. Stable isotope analyses (??13C and ??15N) of sedimentary organic C and total N and of buried seagrass fragments were also carried out at two sites to examine possible changes in nutrient sources to the estuary. Results were consistent with recent increases in N and P in eastern Florida Bay, beginning in the early to mid 1980's. The timing of the increase in nutrient load observed in the sediment data directly preceded the first observations of massive microalgal blooms and seagrass dieoff in Florida Bay in 1987. The observed nutrification was greater for P than N, and was most pronounced at the most northeasterly site sampled (Pass Key). Isotope data (??15N) suggested that an increase in algal production accompanied the increase in N load at the Pass Key site. Along record of organic C, total N, and total P distributions from Whipray Basin in central Florida Bay showed historical peaks (mid 1700's and late 1800's) in organic C and total N, but not total P; these enrichments were nearly equivalent to recent inputs to the estuary. Barren areas were observed to have generally lower concentrations of organic C, total N, and total P in near surface sediments compared to seagrass-covered areas, but had generally similar concentrations in deeper sediments. This suggested that barren areas adjacent to seagrass-covered sites were places where relict sediment was physically transported and covered seagrass beds. This dataset provides an historical view of changes in nutrient inputs to Florida Bay, and baseline information needed for nutrient modeling of the bay.

Journal of Coastal Research↗

Application of near-surface geophysics as part of a hydrologic study of a subsurface drip irrigation system along the Powder River floodplain near Arvada, Wyoming

Rapid development of coalbed natural gas (CBNG) production in the Powder River Basin (PRB) of Wyoming has occurred since 1997. National attention related to CBNG development has focused on produced water management, which is the single largest cost for on-shore domestic producers. Low-cost treatment technologies allow operators to reduce their disposal costs, provide treated water for beneficial use, and stimulate oil and gas production by small operators. Subsurface drip irrigation (SDI) systems are one potential treatment option that allows for increased CBNG production by providing a beneficial use for the produced water in farmland irrigation. Water management practices in the development of CBNG in Wyoming have been aided by integrated geophysical, geochemical, and hydrologic studies of both the disposal and utilization of water. The U.S. Department of Energy (DOE) National Energy Technology Laboratory (NETL) and the U.S. Geological Survey (USGS) have utilized multi-frequency airborne, ground, and borehole electromagnetic (EM) and ground resistivity methods to characterize the near-surface hydrogeology in areas of produced water disposal. These surveys provide near-surface EM data that can be compared with results of previous surveys to monitor changes in soils and local hydrology over time as the produced water is discharged through SDI. The focus of this investigation is the Headgate Draw SDI site, situated adjacent to the Powder River near the confluence of a major tributary, Crazy Woman Creek, in Johnson County, Wyoming. The SDI system was installed during the summer of 2008 and began operation in October of 2008. Ground, borehole, and helicopter electromagnetic (HEM) conductivity surveys were conducted at the site prior to the installation of the SDI system. After the installation of the subsurface drip irrigation system, ground EM surveys have been performed quarterly (weather permitting). The geophysical surveys map the heterogeneity of the near-surface geology and hydrology of the study area. The geophysical data are consistent between surveys using different techniques and between surveys carried out at different times from 2007 through 2011. This paper summarizes geophysical results from the 4-year monitoring study of the SDI system.

Wyoming↗

Natural resource condition assessment: Channel Islands National Park

The Natural Resource Condition Assessment (NRCA) Program aims to provide documentation about the current conditions of important Park natural resources through a spatially explicit, multidisciplinary synthesis of existing scientific data and knowledge. Findings from the NRCA will help Channel Islands National Park (CINP) managers to develop near-term management priorities. The central objectives of this assessment were to evaluate the current conditions and trends of key Park resources, identify important knowledge gaps, and determine key stressors and threats. Because a recent report provided an assessment of marine resources (Engle 2006), which constitute 50% of the park, this NRCA focused on terrestrial resources. For this NRCA, CINP resource managers identified that the greatest Park need was to know whether or not vegetation (primarily woody vegetation) is recovering on the Channel Islands and how this may be influencing recovery of the native terrestrial vertebrates. To address this, the CINP NRCA team evaluated the condition of island vegetation and vertebrate communities using both: 1) already available, summarized information from reports, theses, and journal articles and 2) new analyses of recently available, existing data collected on the islands. Descriptions of specific methods used to analyze available data by the NRCA team are provided within the assessment sections in Chapter 4 of this report. The Team used the Vital Signs indicators as identified by Fancy et al. (2009) for monitoring the condition of Natural Resources in U.S. National Parks. Using this framework, the focal study resource components were the five CINP islands, because these are the bio-geophysical resources of greatest interest to the CINP. Each of the islands has its own unique history of human impacts, ecological conditions, restoration efforts, and natural resource monitoring. The Team evaluated island scrub recovery by assessing changes over time in two metrics: 1) vegetation community structure (species composition, cover, and spatial extent), and 2) vertebrate abundance, relative to the reference condition of each island. The reference conditions for this NRCA were the particular island’s ecological state prior to European settlement or ranching, which represent the ecological state to which the NPS desires the park return. For each metric, the Team determined the Reference Conditions/Values, Current Condition, Trend, and Recovery Potential (based on a review of the literature and from the NRCA team’s analysis of newly available data), Threats and Stressors, Data Gaps, Overall Condition. A qualitative statement of overall current condition was created for each metric, after all data and literature relevant to the measures (i.e., vegetation and vertebrates) of each resource component (i.e., island) were reviewed and evaluated. All information gathered for this NRCA is available and managed by CINP, so that the compilation of resources would be available not only for the assessment team, but will be provided for future Park reference. Chapter 1 of this NRCA provides a descriptive background of NRCAs. Chapter 2 provides Park-wide natural resource background information, while Chapter 3 describes the overall methodological approach used in this assessment. Chapter 4 provides a detailed assessment of each island’s condition, which is then summarized Park-wide and for each island in Chapter 5. Based on both vegetation recovery and vertebrate population abundances, our assessment found Santa Cruz Island (SCI), Santa Rosa Island (SRI), San Miguel Island (SMI), and Anacapa Island (AI) to be, overall, in moderate condition and slowly recovering following the removal of non-native herbivores. The condition of Santa Barbara Island (SBI) is poor and remains in a state that is not likely to improve without assisted recovery by the Park. All islands have exhibited some level of native vegetation recovery, with most of the observed natural recovery occurring on SCI, SRI, SMI, and AI; very little recovery has occurred at present on SBI. Vegetation recovery is uneven across each island and largely limited to mesic areas, such as north-facing slopes. Areas that will likely require some assisted recovery efforts are those that are: at risk of erosion, isolated, lacking native seed banks, and plagued with high competition of non-native grasses and other invasives. Some plant communities, such as exposed upland vegetation on SRI, also have lower natural recovery potential and will likely require assisted recovery. The overall condition of the Park’s terrestrial island vertebrate species generally appears to be good and improving, with high potential for further recovery to reach pre-ranching era reference conditions. This is particularly true for vertebrates on SCI, SRI, and SMI. Although there are limited data for AI, the data that are available suggest that vertebrates on that island are in good condition and improving as well. However, the condition of SBI vertebrates is only moderate, with natural recovery potential being low, with many landbird species’ populations currently declining, extinct, or not improving. An overarching theme across the Park’s terrestrial island vertebrate populations is that many of them are in good condition because the particular animals are habitat generalists, so their population dynamics are not strongly tied to habitat conditions. However, those landbirds associated with riparian vegetation are not showing signs of recovery across the Park islands, and riparian areas appear to be one of the habitats with limited natural recovery potential on the islands. Overwhelmingly, the most critical data gap that emerged from our analysis was the lack of current vegetation maps for most of the islands (AI, SCI, SRI, SMI). The lack of this information made it difficult to assess spatial changes in island vegetation over time, and to relate those changes to observed changes in vertebrate species abundances. Therefore, we were limited in our spatial assessment of vegetation recovery for AI, SCI, SRI, and SMI, and were only able to relate the current vegetation with island landbird analysis for SBI. Another common theme across islands was the lack of information on best techniques for shrub reintroduction and recovery, and the success of invasive species removal and re-vegetation efforts. Abundance, distribution, and habitat affinities of reptiles and amphibians are poorly known for AI, SCI, SRI, and SMI, making it difficult to assess their population condition and trends, and their potential responses to shrub recovery. Mammal and landbird populations are reasonably well-sampled across most of the islands, but data are lacking for most vertebrates from AI, especially West and Middle AI where no vertebrate sampling occurs. The population status, cause of declines, and recovery needs are lacking for several landbird species across multiple islands, including loggerhead shrikes ( Lanius ludovicianus ssp.) on SCI and SRI, and Santa Cruz Island rufous crowned sparrows ( Aimophila ruficeps obscura ) on AI. Additionally, island song sparrows ( Melospiza melodia graminea ) remain extirpated on SBI and data are needed for assessing their recovery potential on the island. The potentially major threats facing the islands’ flora and fauna today are: areas of continued erosion, potential new non-native introductions, and climate change. The Park islands have already experienced warming over the last several decades due to human-induced climate change, and are projected to experience continued warming. These increasing stresses imposed by climate change may slow and inhibit natural recovery potentials for island fauna, and especially flora.

California↗

Landsat time series analysis of fractional plant cover changes on abandoned energy development sites

Oil and natural gas development in the western United States has increased substantially in recent decades as technological advances like horizontal drilling and hydraulic fracturing have made extraction more commercially viable. Oil and gas pads are often developed for production, and then capped, reclaimed, and left to recover when no longer productive. Understanding the rates, controls, and degree of recovery of these reclaimed well sites to a state similar to pre-development conditions is critical for energy development and land management decision processes. Here we use a multi-decadal time series of satellite imagery (Landsat 5, 1984–2011) to assess vegetation regrowth on 365 abandoned well pads located across the Colorado Plateau in Utah, Colorado, and New Mexico. We developed high-frequency time series of the Soil-Adjusted Total Vegetation Index (SATVI) for each well pad using the Google Earth Engine cloud computing platform. BFAST time-series models were used to fit temporal trends, identifying when vegetation was cleared from the site and the magnitudes and rates of vegetation change after abandonment. The time series metrics are used to calculate the relative fractional vegetation cover (RFVC) of each pad, a measure of post-abandonment vegetation cover relative to pre-drilling condition. Mean and median RFVC were 36% (s.d. 33%) and 26%, respectively, five years after abandonment, with one third of well pads having RFVC greater than 50%. Statistical analyses suggest that much of the high vegetation cover is associated with weedy invasive annual species such as cheatgrass (Bromus tectorum) and Russian thistle (Salsola spp.). Climate conditions and the year of abandonment also play a role, with increased cover in later years associated with a wetter period. Non-linear change at many pads suggests longer recovery times than would be estimated by linear extrapolation. New techniques implemented here address a complex response of cover change to soils, management, and climate over time, and can be extended to the operational monitoring of energy development across large areas.

International Journal of Applied Earth Observation↗

Hydrogeochemistry and coal-associated bacterial populations from a methanogenic coal bed

Biogenic coalbed methane (CBM), a microbially-generated source of natural gas trapped within coal beds, is an important energy resource in many countries. Specific bacterial populations and enzymes involved in coal degradation, the potential rate-limiting step of CBM formation, are relatively unknown. The U.S. Geological Survey (USGS) has established a field site, (Birney test site), in an undeveloped area of the Powder River Basin (PRB), with four wells completed in the Flowers-Goodale coal bed, one in the overlying sandstone formation, and four in overlying and underlying coal beds (Knoblach, Nance, and Terret). The nine wells were positioned to characterize the hydraulic conductivity of the Flowers-Goodale coal bed and were selectively cored to investigate the hydrogeochemistry and microbiology associated with CBM production at the Birney test site. Aquifer-test results indicated the Flowers-Goodale coal bed, in a zone from about 112 to 120 m below land surface at the test site, had very low hydraulic conductivity (0.005 m/d) compared to other PRB coal beds examined. Consistent with microbial methanogenesis, groundwater in the coal bed and overlying sandstone contain dissolved methane (46 mg/L average) with low δ 13 C values (−67‰ average), high alkalinity values (22 meq/kg average), relatively positive δ 13 C-DIC values (4‰ average), and no detectable higher chain hydrocarbons, NO 3 − , or SO 4 2− . Bioassay methane production was greatest at the upper interface of the Flowers-Goodale coal bed near the overlying sandstone. Pyrotag analysis identified Aeribacillus as a dominant in situ bacterial community member in the coal near the sandstone and statistical analysis indicated Actinobacteria predominated coal core samples compared to claystone or sandstone cores. These bacteria, which previously have been correlated with hydrocarbon-containing environments such as oil reservoirs, have demonstrated the ability to produce biosurfactants to break down hydrocarbons. Identifying microorganisms involved in coal degradation and the hydrogeochemical conditions that promote their activity is crucial to understanding and improving in situ CBM production.

Montana, Wyoming↗

High-resolution delineation of chlorinated volatile organic compounds in a dipping, fractured mudstone: depth- and strata-dependent spatial variability from rock-core sampling

Synthesis of rock-core sampling and chlorinated volatile organic compound (CVOC) analysis at five coreholes, with hydraulic and water-quality monitoring and a detailed hydrogeologic framework, was used to characterize the fine-scale distribution of CVOCs in dipping, fractured mudstones of the Lockatong Formation of Triassic age, of the Newark Basin in West Trenton, New Jersey. From these results, a refined conceptual model for more than 55 years of migration of CVOCs and depth- and strata-dependent rock-matrix contamination was developed. Industrial use of trichloroethene (TCE) at the former Naval Air Warfare Center (NAWC) from 1953 to 1995 resulted in dense non-aqueous phase liquid (DNAPL) TCE and dissolved TCE and related breakdown products, including other CVOCs, in underlying mudstones. Shallow highly weathered and fractured strata overlie unweathered, gently dipping, fractured strata that become progressively less fractured with depth. The unweathered lithology includes black highly fractured (fissile) carbon-rich strata, gray mildly fractured thinly layered (laminated) strata, and light-gray weakly fractured massive strata. CVOC concentrations in water samples pumped from the shallow weathered and highly fractured strata remain elevated near residual DNAPL TCE, but dilution by uncontaminated recharge, and other natural and engineered attenuation processes, have substantially reduced concentrations along flow paths removed from sources and residual DNAPL. CVOCs also were detected in most rock-core samples in source areas in shallow wells. In many locations, lower aqueous concentrations, compared to rock core concentrations, suggest that CVOCs are presently back-diffusing from the rock matrix. Below the weathered and highly fractured strata, and to depths of at least 50 meters (m), groundwater flow and contaminant transport is primarily in bedding-plane-oriented fractures in thin fissile high-carbon strata, and in fractured, laminated strata of the gently dipping mudstones. Despite more than 18 years of pump and treat (P&T) remediation, and natural attenuation processes, CVOC concentrations in aqueous samples pumped from these deeper strata remain elevated in isolated intervals. DNAPL was detected in one borehole during coring at a depth of 27 m. In contrast to core samples from the weathered zone, concentrations in core samples from deeper unweathered and unfractured strata are typically below detection. However, high CVOC concentrations were found in isolated samples from fissile black carbon-rich strata and fractured gray laminated strata. Aqueous-phase concentrations were correspondingly high in samples pumped from these strata via short-interval wells or packer-isolated zones in long boreholes. A refined conceptual site model considers that prior to P&T remediation groundwater flow was primarily subhorizontal in the higher-permeability near surface strata, and the bulk of contaminant mass was shallow. CVOCs diffused into these fractured and weathered mudstones. DNAPL and high concentrations of CVOCs migrated slowly down in deeper unweathered strata, primarily along isolated dipping bedding-plane fractures. After P&T began in 1995, using wells open to both shallow and deep strata, downward transport of dissolved CVOCs accelerated. Diffusion of TCE and other CVOCs from deeper fractures penetrated only a few centimeters into the unweathered rock matrix, likely due to sorption of CVOCs on rock organic carbon. Remediation in the deep, unweathered strata may benefit from the relatively limited migration of CVOCs into the rock matrix. Synthesis of rock core sampling from closely spaced boreholes with geophysical logging and hydraulic testing improves understanding of the controls on CVOC delineation and informs remediation design and monitoring.

New Jersey, New York, Pennsylvania↗

Prediction and visualization of redox conditions in the groundwater of Central Valley, California

Regional-scale, three-dimensional continuous probability models, were constructed for aspects of redox conditions in the groundwater system of the Central Valley, California. These models yield grids depicting the probability that groundwater in a particular location will have dissolved oxygen (DO) concentrations less than selected threshold values representing anoxic groundwater conditions, or will have dissolved manganese (Mn) concentrations greater than selected threshold values representing secondary drinking water-quality contaminant levels (SMCL) and health-based screening levels (HBSL). The probability models were constrained by the alluvial boundary of the Central Valley to a depth of approximately 300 m. Probability distribution grids can be extracted from the 3-D models at any desired depth, and are of interest to water-resource managers, water-quality researchers, and groundwater modelers concerned with the occurrence of natural and anthropogenic contaminants related to anoxic conditions. Models were constructed using a Boosted Regression Trees (BRT) machine learning technique that produces many trees as part of an additive model and has the ability to handle many variables, automatically incorporate interactions, and is resistant to collinearity. Machine learning methods for statistical prediction are becoming increasing popular in that they do not require assumptions associated with traditional hypothesis testing. Models were constructed using measured dissolved oxygen and manganese concentrations sampled from 2767 wells within the alluvial boundary of the Central Valley, and over 60 explanatory variables representing regional-scale soil properties, soil chemistry, land use, aquifer textures, and aquifer hydrologic properties. Models were trained on a USGS dataset of 932 wells, and evaluated on an independent hold-out dataset of 1835 wells from the California Division of Drinking Water. We used cross-validation to assess the predictive performance of models of varying complexity, as a basis for selecting final models. Trained models were applied to cross-validation testing data and a separate hold-out dataset to evaluate model predictive performance by emphasizing three model metrics of fit: Kappa; accuracy; and the area under the receiver operator characteristic curve (ROC). The final trained models were used for mapping predictions at discrete depths to a depth of 304.8 m. Trained DO and Mn models had accuracies of 86–100%, Kappa values of 0.69–0.99, and ROC values of 0.92–1.0. Model accuracies for cross-validation testing datasets were 82–95% and ROC values were 0.87–0.91, indicating good predictive performance. Kappas for the cross-validation testing dataset were 0.30–0.69, indicating fair to substantial agreement between testing observations and model predictions. Hold-out data were available for the manganese model only and indicated accuracies of 89–97%, ROC values of 0.73–0.75, and Kappa values of 0.06–0.30. The predictive performance of both the DO and Mn models was reasonable, considering all three of these fit metrics and the low percentages of low-DO and high-Mn events in the data.

California↗

The changing shapes of active volcanoes: History, evolution, and future challenges for volcano geodesy

At the very heart of volcanology lies the search for the 'plumbing systems' that form the inner workings of Earth’s active volcanoes. By their very nature, however, the magmatic reservoirs and conduits that underlie these active volcanic systems are elusive; mostly they are observable only through circumstantial evidence, using indirect, and often ambiguous, surficial measurements. Of course, we can infer much about these systems from geologic investigation of materials brought to the surface by eruptions and of the exposed roots of ancient volcanoes. But how can we study the magmatic processes that are occurring beneath Earth’s active volcanoes? What are the geometry, scale, physical, and chemical characteristics of magma reservoirs? Can we infer the dynamics of magma transport? Can we use this information to better forecast the future behavior of volcanoes? These questions comprise some of the most fundamental, recurring themes of modern research in volcanology. The field of volcano geodesy is uniquely situated to provide critical observational constraints on these problems. For the past decade, armed with a new array of technological innovations, equipped with powerful computers, and prepared with new analytical tools, volcano geodesists have been poised to make significant advances in our fundamental understanding of the behavior of active volcanic systems. The purpose of this volume is to highlight some of these recent advances, particularly in the collection and interpretation of geodetic data from actively deforming volcanoes. The 18 papers that follow report on new geodetic data that offer valuable insights into eruptive activity and magma transport; they present new models and modeling strategies that have the potential to greatly increase understanding of magmatic, hydrothermal, and volcano-tectonic processes; and they describe innovative techniques for collecting geodetic measurements from remote, poorly accessible, or hazardous volcanoes. To provide a proper context for these studies, we offer a short review of the evolution of volcano geodesy, as well as a case study that highlights recent advances in the field by comparing the geodetic response to recent eruptive episodes at Mount St. Helens. Finally, we point out a few areas that continue to challenge the volcano geodesy community, some of which are addressed by the papers that follow and which undoubtedly will be the focus of future research for years to come.

Journal of Volcanology and Geothermal Research↗

Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challenges

Coalbed methane (CBM) makes up a significant portion of the world’s natural gas resources. The discovery that approximately 20% of natural gas is microbial in origin has led to interest in microbially enhanced CBM (MECoM), which involves stimulating microorganisms to produce additional CBM from existing production wells. This paper reviews current laboratory and field research on understanding processes and reservoir conditions which are essential for microbial CBM generation, the progress of efforts to stimulate microbial methane generation in coal beds, and key remaining knowledge gaps. Research has been primarily focused on identifying microbial communities present in areas of CBM generation and attempting to determine their function, in-situ reservoir conditions that are most favorable for microbial CBM generation, and geochemical indicators of metabolic pathways of methanogenesis (i.e., acetoclastic or hydrogenotrophic methanogenesis). Meanwhile, researchers at universities, government agencies, and companies have focused on four primary MECoM strategies: 1) microbial stimulation (i.e., addition of nutrients to stimulate native microbes); 2) microbial augmentation (i.e., addition of microbes not native to or abundant in the reservoir of interest); 3) physically increasing microbial access to coal and distribution of amendments; and 4) chemically increasing the bioavailability of coal organics. Most companies interested in MECoM have pursued microbial stimulation: Luca Technologies, Inc., successfully completed a pilot scale field test of their stimulation strategy, while two others, Ciris Energy and Next Fuel, Inc., have undertaken smaller scale field tests. Several key knowledge gaps remain that need to be addressed before MECoM strategies can be implemented commercially. Little is known about the bacterial community responsible for coal biodegradation and how these microorganisms may be stimulated to enhance microbial methanogenesis. In addition, research is needed to understand what fraction of coal is available for biodegradation, and methods need to be developed to determine the extent of in-situ coal biodegradation by MECoM processes for monitoring changes to coal quality. Questions also remain about how well field-scale pilot tests will scale to commercial production, how often amendments will need to be added to maintain new methane generation, and how well MECoM strategies transfer between coal basins with different formation water geochemistries and coal ranks. Addressing these knowledge gaps will be key in determining the feasibility and commercial viability of MECoM technology.

International Journal of Coal Geology↗

Developing an effective Agassiz's Desert Tortoise monitoring program: Final report to the Coachella Valley Conservation Commission

Agassiz’s desert tortoise (Gopherus agassizii) is a conservation-reliant species with populations north and west of the Colorado River protected as threatened under the Endangered Species Act (Averill-Murray et al. 2012). Since it was listed under this category in 1990, a great deal has been learned about the natural history of the species, and it is now one of the best-studied turtles in the United States (Lovich and Ennen 2013). However, the accumulated body of scientific data available for the species has not yet been translated into recovery or delisting of the species. Successful conservation of any species requires knowledge of their natural history and how vital rates affect their ability to maintain stable populations in the face of natural and anthropogenic stresses. Agassiz’s desert tortoises occur from southwestern Utah to near the Mexican border in California – a distance of over 450 km – but population densities vary greatly across this immense landscape (U.S. Fish and Wildlife Service 2015). Tortoises occur in the Sonoran Desert of California, including the eastern and western ends of the Coachella Valley, where it is one of 27 species covered under the Coachella Valley Multiple Species Habitat Conservation Plan and Natural Community Conservation Plan (CVMSHCP/NCCP). The southern portion of Joshua Tree National Park (JTNP) lies within this 1.1 million acre planning area, and was predicted to be an area of low-density tortoise populations using habitat suitability modeling (Barrows 2011). JTNP is near the southern distributional limit of G. agassizii, yet very little has been published regarding the ecology of tortoises in the Sonoran Desert of California. Reproductive output is an important gross measure of the ability of a population to persist. When integrated with data on fertility and survivorship, this information forms a foundation for assessing population status and formulating effective management strategies (e.g., Congdon et al. 1993, 1994), especially for imperiled species. One aspect of the biology of G. agassizii that has been particularly well-studied is reproductive output. However, most of what we know about this topic comes from research in the Mojave Desert portion of the species’ range (Ernst and Lovich 2009). Comparatively little has been published on the reproductive ecology of populations living in the Sonoran Desert ecosystem of California. Publications by Lovich et al. (1999, 2011, 2012, 2014, 2015) constitute the main body of literature on desert tortoise reproductive ecology in the Sonoran Desert of California, with one study population located at the western end of the CVMSHCP/NCCP area. Collecting data on Agassiz’s desert tortoise ecology in the Sonoran Desert ecosystem is important due to significant differences between the two adjacent desert ecosystems, especially the timing and amounts of annual precipitation, and their potential effects on reproductive output (e.g., Lovich et al. 5 2015). There are also differences in the vulnerability of tortoises to the effects of a warming, drying climate between the two deserts (Barrows 2011; Zylstra et al. 2012). The overall goal of this study was to collect data on demography, reproductive output, and genetic affinities at a study site in the Sonoran Desert portion of JTNP in the eastern end of the CVMSHCP/NCCP area. Specific objectives included: 1) Collect data to establish baselines on tortoise populations and/or their habitat suitability in core habitat within the CVNCCP area, including biotic and abiotic variables affecting persistence of tortoise populations; 2) Compare and contrast with data collected on desert tortoises at USGS/BLM study site near Palm Springs over 16 years; 3) Support long-term modeling efforts needed to determine tortoise population viability; 4) Refine modeled relationships with identified threats such as fire, invasive species and climate change; and 5) Prioritize adaptive management needs for the desert tortoise in and beyond the CVNCCP area. The data from this study will aid in determining baseline estimates of the desert tortoise population size within the planning area as well as establish a marked population of Agassiz’s desert tortoises for future monitoring. Data will be integrated with habitat modeling in order to refine model output. Genetic data will be collected on both the north and south sides of Interstate 10 to determine the potential effects of habitat fragmentation and genetic mixing. Analyses are ongoing and results beyond those presented in this report will be published in peer-reviewed scientific journals following inclusion of additional data collected on the south side of Shavers Valley in 2017-2018.

Report↗

Effects of karst and geologic structure on the circulation of water and permeability in carbonate aquifers

The results of the natural processes caused by solution and leaching of limestone, dolomite, gypsum, salt and other soluble rocks, is known as karst. Development of karst is commonly known as karstification, which may have a pronounced effect on the topography, hydrology and environment, especially where such karst features as sinkholes and vertical solution shafts extend below the land surface and intersect lateral solution passages, cavities, caverns and other karst features in carbonate rocks. Karst features may be divided into two groups: (1) surficial features that do not extend far below the surface; and (2) karst features such as sinkholes that extend below the surface and affect the circulation of water below. The permeability of the most productive carbonate aquifers is due chiefly to enlargement of fractures and other openings by circulation of water. Important controlling factors responsible for the development of karst and permeability in carbonate aquifers include: (1) climate, topography, and presence of soluble rocks; (2) geologic structure; (3) nature of underground circulation; and (4) base level. Another important factor is the condition of the surface of the carbonate rocks at the time they are exposed to meteoric water. A carbonate rock surface, with soil or relatively permeable, less soluble cover, is more favorable for initiation of karstification and solution than bare rocks. Water percolates downward through the cover to the underlying carbonate rocks instead of running off on the surface. Also, the water becomes more corrosive as it percolates through the permeable cover to the underlying carbonate rocks. Where there is no cover or the cover has been removed, the carbonate rocks become case hardened and resistant to erosion. However, in regions underlain not only by carbonate rocks but also by beds of anhydrite, gypsum and salt, such as the Hueco Plateau in southeastern New Mexico, subsurface solution may occur where water without natural acids moves down from bare rock surfaces through cracks to the beds that are more soluble than carbonate rocks. For example, in the area of Carlsbad Caverns in southeastern New Mexico, much of the water responsible for solution that formed the caverns apparently entered the groundwater system through large open fractures and did not form sinkhole topography. East of the Carlsbad Caverns, however, in the Pecos River Valley where the carbonate rocks are overlain by the less soluble Ogallala Formation of Late Tertiary age, solution began along escarpments as the Pecos River and its tributaries cut through the less soluble cover. As these escarpments retreated, sinkholes and other karst features developed. Joints or fractures are essential for initiation of downward percolation of water in compact carbonate rocks such as some Paleozoic limestone in which there is no intergranular permeability. Also joints or fractures and bedding planes may be essential in the initiation of lateral movement of water in the zone of saturation. Where conditions of recharge and discharge are favorable, groundwater may move parallel to the dip. However, the direction of movement of water in most carbonate rocks is not necessarily down dip or parallel to the dip. The general direction of movement of both surface and groundwater may be parallel to the strike in a breached anticline. Faults may restrict the lateral movement of water, especially if water-bearing beds are faulted against relatively impervious beds. Conversely, some fault may serve as avenues through which water may move as, for example, in the Cretaceous Edwards aquifer in the San Antonio area, Texas. Karst aquifers, chiefly carbonate rocks, may be placed in three groups according to water-bearing capacity. Water in aquifers of group 1 occurs chiefly in joints, fractures, and other openings that have not been enlarged by solution. The yield of wells is small. Aquifers in group 2 , with low to intermediate yields, are those in which water occurs in joints and fractures with some cavities and channels enlarged by solution. Aquifers in group 3 are those in which the yield of wells and springs range from intermediate to very large. This group includes five of the most productive aquifers in the U.S.A. The water-bearing beds of all of these productive aquifers, except the Biscayne aquifer in southeastern Florida, contain buried paleokarst in which the permeability has been reactivated and enlarged by the present circulation system.

Journal of Hydrology↗

Precaldera mafic magmatism at Long Valley, California: Magma-tectonic siting and incubation of the Great Rhyolite System

The iconic volcanic center at Long Valley has released ∼820 km 3 of rhyolite in at least 110 eruptions. From 2.2 Ma until 0.23 Ma, products were exclusively rhyolitic, and ∼ 700 km 3 were high-silica rhyolite severely depleted in Sr, Ba, and Eu. The rhyolitic interval was preceded by an interval from 3.9 to 2.6 Ma with numerous basalt-andesite-dacite eruptions accompanied by no rhyolite at all. We have now mapped the circumcaldera products of this interval, defined 107 eruptive units, characterized them all chemically and petrographically, and dated many by 40 Ar/ 39 Ar. Here we display and describe them by sector around the caldera, interpret the nature of the transcrustal magma system that eventuated in the 35-km-wide Long Valley granite-rhyolite pluton, and analyze regional tectonic factors that did or did not contribute to siting the system. Nine Miocene (12–6 Ma) eruptive units close to Long Valley were followed by a Pliocene flare-up that released >300 mafic eruptions in a SW–NE swath 170 km long, centered across the later site of Long Valley. The basalts and their fractionates are intraplate alkalic products dominated by a continental lithosphere that had long been fluxed by Mesozoic subduction. Tertiary arc volcanism had not impinged on the area of Long Valley. Volumes estimated for the 107 Neogene precaldera eruptive units (only 40 of which exceeded 0.1 km 3 ) total ∼ 27 km 3 ± 50%—only ∼3% of the subsequent volume of rhyolite erupted. Such a volume of high-silica rhyolite with ultra-low Sr and Eu is not a product of partial melting but requires as proximate parent a leucogranitic crystal mush that is itself the upper level of a long-lived plutonic reservoir that extends to the lower crust. The 27 km 3 of Neogene magma that erupted was a small contingent of the mantle-derived basaltic flux needed to energize (and contribute its fractionated melt to) a 30-km-deep compositionally graded crustal column, which culminated in ∼10,000 km 3 of granitoid mush from which 820 km 3 of Quaternary high-silica rhyolitic melt escaped and erupted. Pliocene basaltic eruptions ceased at ∼2.6 Ma, probably because the basaltic flux intensified sufficiently to render the mushy upper crust impenetrable. The 2.6–2.2 Ma quiescent interval represented culmination of thermal activation of the plutonic column and refinement of its leucogranitic mushy upper layer, from which extreme melts escaped for the next 2 Myr. The Pliocene mafic swath crosses the Sierran rangefront fault zone coincident with a left-stepping extensional reentrant that also began developing at ∼3 Ma. Moreover, Long Valley overlies a dextral offset in the initial Sr-isotope 0.706 line, which may reflect the rifted or attenuated edge of Proterozoic crust and mantle lithosphere. Concatenation of these three influences may account for siting of intensified edge-focused magmatism that produced the great Quaternary pluton.

California↗

Genetic structure in Elk persists after translocation

Elk ( Cervus canadensis ) translocation success is thought to be facilitated by high post‐release herd cohesion and limited movements; both should ensure genetic mixing following release. Such mixing is important to reduce potential effects of inbreeding or genetic drift, which can be especially important in small founding populations. We had a natural experiment where we could evaluate genetic mixing of 2 distinct lineages of elk after translocation to the same area. Founding elk ultimately came from north and south of a road barrier at Elk Island National Park (EINPN or EINPS, respectively), Alberta, Canada and the 2 groups were genetically distinct. During 2000 to 2003, elk originating from Elk Island National Park were translocated to Cumberland Mountains, Tennessee (TNCM) and Great Smoky Mountains National Park, North Carolina (GSMNP), USA (some elk spent time at Land Between the Lakes Recreation Area, Kentucky, USA, before their final translocation). At TNCM, translocated elk were hard released, whereas at GSMNP elk were held in pens up to 60 days before release (i.e., soft release). We hypothesized that associations formed in the source population would affect genetic structure in the future population. We predicted that matrilineal groups would stay closer together and have similar movements after translocation. We used 16 microsatellite markers to analyze genetic composition and structure of translocated elk and their offspring in the years after release. Most source elk used for translocation strongly assigned to either EINPN or EINPS (93.2%, n = 204). Evaluating the genetic structure of offspring after translocation, we found the 2 genetic groups mostly persisted ≥11 years following release. We measured the Euclidean distance between all possible pairs of telemetered female elk during each season and year and calculated the maximum distance moved from the release sites for females surviving >1 year. Mean Euclidean distances between pairwise locations of female elk were similar for each genetic cluster for each area. The mean distances for all paired locations (genetic clusters combined) in TNCM were 14.67 km ( n = 4,576 ± 13.23 [SD]) and in GSMNP were 9.30 km ( n = 1,468 ± 9.75). However, when looking at only simultaneous locations <50 m apart, the frequency of occurrence was higher ( P < 0.001) for elk with the same genetic structure (71.1%) compared with those with different structure (28.9%). The maximum distance travelled from the release site was not different for the 2 genetic groups, but EINPN females tended to travel farther. Pairwise female distances were lower in GSMNP where we used a soft release. Release methodology and social structure appear to affect movements and possibly genetic mixing after translocation. Given that restoration success can depend on maintaining genetic diversity and number of founders, our analyses suggest that within‐cluster breeding bias can result in lower genetic variability and a smaller effective population size than previously assumed.

Kentucky, Tennessee↗

Regional occurrence of aqueous tungsten and relations with antimony, arsenic and molybdenum concentrations (Sardinia, Italy)

T ungsten (W) is rarely found in natural waters, yet it can be introduced into the food chain and cause potentially toxic effects. Uptake of W by plants and vegetables, or trace presence of W in drinking water are possible vectors for ingestion of W by humans. The latter is recognized as a possible cause of lymphatic leukemia. Increased uses of W might result in a degradation of water resources, with attendant adverse effects on biota and human health. Therefore, this study was aimed at investigating regional occurrence and speciation of W in aquatic systems in Sardinia, Italy, factors affecting W mobility and possible relations with other oxyanion-forming trace elements such as Sb, As and Mo. Although our results are specifically from Sardinia, the implications are broader and should prompt future studies in other areas with known high W concentrations. A total of 350 sample sites are reported here, including surface waters, groundwaters, mine drainages, thermal waters and local seawater. The waters were analyzed for major and trace components, including W, Sb, As and Mo. The waters showed a variety of major chemical compositions and W concentrations. High concentrations of W were found in some mine waters and drainages from slag heaps, with W, Sb and As up to 140, 5000 and 800 μg L −1 , respectively. The highest concentrations of W occurred under slightly alkaline pH and oxygenated conditions, and were likely due to the dissolution of scheelite [CaWO 4 ] hosted in materials with which the water came into contact. High W concentrations also were observed in thermal waters, under alkaline pH and reducing conditions, and sometimes coincided with relatively high concentrations either of As or Mo. Previous studies of W geochemistry have focused on WO 4 2− as the major dissolved form of W. For this study, we have augmented the thermodynamic database in PHREEQC to include possible formation of many other W-bearing complexes gleaned from the literature. The results of the speciation calculations with the newly added complexation reactions shows that the neutral species CaWO 4 ° and MgWO 4 ° are particularly dominant in most W-bearing waters and lead to undersaturation with respect to scheelite and other W-bearing minerals. Assessing W contamination in water systems and establishing W limits in drinking water may prevent potential adverse effects of W on human and ecosystem health.

Sardinia↗

Economics and coal resource appraisal: strippable coal in the Illinois Basin ( USA)

Coal-resource appraisals generally describe the location and general characteristics of coal beds. Estimates are made of the average overburden depth (depth of the coal bed below the surface), bed thickness, and perhaps certain chemical properties of the coal [1]. Although such resource compilations represent an important initial step, neither they nor current estimates provide sufficient information to determine the costs of alternative options for National energy policy. Because coal is expected to provide an increasing part of future overall U.S. energy supply, it is crucial for long term planning that coalresource appraisals convey sufficient information regarding the degree of economic resource scarcity (escalation of unit costs for mining remaining deposits as the best deposits in an area are mined out) expected as coal consumption increases. However, assumptions embodied in most large-scale models of coal supply [13; 20] imply that the coal reserves that exist can be commercially produced as needed. As demonstrated by the embargo of 1973-1974 and more recent difficulties in obtaining crude oil, even a slight temporary commodity shortfall will result in significant economic losses when the commodity supplies a large proportion of the total energy used by an economy. For the United States, crude oil resource estimates did not give warning of a decline in domestic petroleum product. In this paper we argue that coal-resource estimates, as they are now made, will not give warning of future supply difficulties. A method for incorporating an economic dimension into appraisals of strippable coal resources is presented and is applied to a major U.S. coal-producing region, the Illinois part of the Illinois basin. Illinois accounts for nearly 70% of the demonstrated strippable coal reserve base of the Illinois basin [12]. In particular, a long-run incremental cost function (that is unit costs vs. cumulative reserves extracted) is estimated for strippable coal in Illinois. The estimated cost function exhibits an initial range over which costs increase at a constant rate-followed by a range where costs increase very rapidly and the function becomes quite inelastic. This long-run incremental cost function is significant for two reasons. Comparison of the demonstrated reserve base for strippable coal (14.8 billion tons) with cumulative production (since 1920 of 1.1 billion tons) might suggest that future depletion will not be significant when, in fact, the cost function presented here indicates otherwise. Because the only states having more reserves of strippable coal than Illinois are Montana and Wyoming [18], these results have implications for national coal-resource appraisal. Secondly, most models used to study the effects of alternative public policies in coal markets are static in nature [15; 16] and cannot consider the effects of increasing costs. Furthermore, models which are multi-period in nature [11; 13] appear to have little empirical basis for their assumptions regarding the escalation of production costs resulting from depletion. The plan of the paper is as follows. First a description of the analytical approach for constructing the long-run incremental cost-reserve function is discussed. Following this, the descriptions of the Illinois basin and the basic physical data are presented. In the concluding section, the main results are presented and their implications are explored

Southern Economic Journal↗

Organic petrology and geochemistry of mudrocks from the lacustrine Lucaogou Formation, Santanghu Basin, northwest China: Application to lake basin evolution

Exploration for tight oil in the frontier Santanghu Basin of northwest China has resulted in recent commercial discoveries sourced from the lacustrine Upper Permian Lucaogou Formation, already considered a “world class source rock” in the Junggar Basin to the west. Here we apply an integrated analytical program to carbonate-dominated mudrocks from the Lucaogou Formation in Santanghu Basin to document the nature of organic matter (OM) in the context of an evolving lake system. The organic-rich samples (TOC 2.8–11.4 wt%; n = 10) were widely spaced from an ~ 200 m cored section, interpreted from textural and mineralogical evidence to document transition from a lower under-filled to an overlying balanced-filled lake. Organic matter is dominated by moderate to strongly fluorescent amorphous material with Type I geochemical signature (HI values 510–755; n = 10) occurring in a continuum from lamellar stringers, 10–20 μm thick, some ≥ 1 mm in length (possible microbial mat; preserved only in lower under-filled section) to finely-disseminated amorphous groundmass intimately intermixed with mineral matrix. Biomarkers for methanotrophs and photosynthetic cyanobacteria indicate a complex microbial consortium. A unicellular prasinophyte green alga(?), similar to Tasmanites in marine rocks, is present as discrete flattened discs 50–100 μm in diameter. Type III OM including vitrinite (some fluorescent) and inertinite also is abundant. Solid bitumen, indicating local kerogen conversion, fills voids and occurs throughout the cored section. Vitrinite reflectance values are 0.47–0.58%, consistent with strong OM fluorescence but may be “suppressed”. Other proxies, e.g., biomarker parameters, indicate the Lucaogou Formation is in the early oil window at this location. On average, slightly more amorphous OM and telalginite are present in the lower section, consistent with a shallow, stratified, saline environment with low sediment dilution. More inertinite is present in the upper section, indicating greater terrestrial influx and consistent with higher quartz and plagioclase content (dominantly authigenic chalcedony and albite). Laminated mudstones in the upper section indicate anoxia prevented bioturbation from benthic grazing, also indicating stratified water column conditions. A decrease upsection in authigenic dolomite with reciprocal increase of ankerite/siderite is consistent with decreasing salinity, as is an overall decrease in gammacerane index values. These observations suggest evolution from a shallow, stratified evaporative (saline) setting to a deeper, stratified freshwater basin with higher water input during Lucaogou deposition. The evolution from an under-filled to balance-filled lake in Santanghu Basin is similar to Lucaogou deposition in Junggar Basin, suggesting similar tectonic and climatic controls. Paleoclimate interpretations from other researchers in this area suggested an evolution from semi-arid to humid conditions during the Roadian; we interpret that the evolution from an under-filled to balanced-filled lake seen in our data is in response to climate change, and may represent increased groundwater delivery to the Santanghu Basin.

International Journal of Coal Geology↗

Remarkable isotopic and trace element trends in potassic through sodic Cretaceous plutons of the Yukon-Koyukuk Basin, Alaska, and the nature of the lithosphere beneath the Koyukuk terrane

During the period from 110 to 80 m.y. ago, a 450-km-long magmatic belt was active along the northern margin of Yukon-Koyukuk basin and on eastern Seward Peninsula. The plutons intruded Upper Jurassic(?) and Lower Cretaceous volcanic arc rocks and Cretaceous sedimentary rocks in Yukon-Koyukuk basin and Proterozoic and lower Paleozoic continental rocks in Seward Peninsula. Within Yukon-Koyukuk basin, the plutons vary in composition from calc-alkalic plutons on the east to potassic and ultrapotassic alkalic plutons on the west. Plutons within Yukon-Koyukuk basin were analyzed for trace element and isotopic compositions in order to discern their origin and the nature of the underling lithosphere. Farthest to the east, the calc-alkalic rocks of Indian Mountain pluton are largely tonalite and sodic granodiorite, and have low Rb (average 82 ppm), high Sr (>600 ppm), high chondrite-normalized (cn) Ce/Yb (16&ndash;37), low &delta; 18 O (+6.5 to +7.1), low initial 87 Sr/ 86 Sr (SIR) (0.704), and high initial 143 Nd/ 144 Nd (NIR) (0.5126). These rocks resemble those modelled elsewhere as partial melts and subsequent fractionates of basaltic or gabbroic metaigneous rocks, and may be products of melting in the deeper parts of the Late Jurassic(?) and Early Cretaceous volcanic arc. Farthest to the west, the two ultrapotassic bodies of Selawik and Inland Lake are high in Cs (up to 93 ppm), Rb (up to 997 ppm), Sr, Ba, Th, and light rare earth elements, have high (Ce/Yb)cn (30, 27), moderate to low &delta; 18 O (+8.4, +6.9), high SIR (0.712, 0.710), and moderate NIR (0.5121&ndash;0.5122). These rocks resemble rocks of Australia and elsewhere that were modelled as melts of continental mantle that had been previously enriched in large cations. This mantle may be Paleozoic or older. The farthest west alkalic pluton of Selawik Hills is largely monzonite, quartz monzonite, and granite; has moderate Rb (average 284 ppm), high Sr (>600 ppm), high (Ce/Yb)cn (15&ndash;25), moderate &delta; 18 O (+8.3 to +8.6), high SIR (0.708&ndash;0.712), and moderate NIR (0.5121&ndash;0.5122). These rocks may be the product of interaction of magma derived from old continental mantle and magma derived from old continental crust. Plutons between eastern and western extremes show completely gradational variations in the concentration of K and Rb and in the isotopic compositions of Sr, Nd, and O. These plutons probably originated either by melting in a mixed source composed of a Paleozoic or older continental section (mantle + crust) overlain by Mesozoic mafic arc rocks, or by mixing of ultrapotassic to potassic magmas from continental sources (mantle + crust), and tonalitic magmas from arc sources. We infer from these results that the northwest portion of Yukon-Koyukuk basin is underlain by a substantial continental basement of Paleozoic or greater age. This basement probably thins out to the east. There is no geochemical evidence for continental basement east of about longitude 157&deg;, or along a belt of at least 50 km width flanking Ruby Geanticline as far to the southwest as about longitude 161&deg;. These areas are probably underlain by oceanic and Mesozoic arc rocks.

Alaska↗

Lake sturgeon response to a spawning reef constructed in the Detroit river

Prior to the First World War, the bi-national Detroit River provided vast areas of functional fish spawning and nursery habitat. However, ongoing conflicting human uses of these waters for activities such as waste disposal, water withdrawals, shoreline development, shipping, recreation, and fishing have altered many of the chemical, physical, and biological processes of the Detroit River. Of particular interest and concern to resource managers and stakeholders is the significant loss and impairment of fish spawning and nursery habitat that led to the decline in abundance of most fish species using this ecosystem. Lake sturgeon ( Acipenser fulvescens ) populations for example, were nearly extirpated by the middle of the 20th century, leaving only a small fraction of their former population. Fisheries managers recognized that the loss of suitable fish spawning habitat is a limiting factor in lake sturgeon population rehabilitation in the Detroit River. In efforts to remediate this beneficial water use impairment, a reef consisting of a mixture of natural rock and limestone was constructed at the upstream end of Fighting Island in 2008. This paper focuses on the response by lake sturgeon to the different replicates of suitable natural materials used to construct the fish spawning habitat at Fighting Island in the Detroit River. Pre-construction fisheries assessment during 2006–2008 showed that along with the presence of adult lake sturgeon, spawning conditions were favorable. However, no eggs were found in assessments conducted prior to reef construction. The 3300 m 2 Fighting Island reef was placed at the upstream end of the island in October of 2008. The construction design included 12 spawning beds of three replicates each consisting of either round rock, small or large (shot-rock) diameter limestone or a mixture thereof. An observed response by spawning lake sturgeon occurred the following year when spawning-ready adults (ripe), viable eggs, and larvae were collected during May and June 2009. Additional eggs and spawning-ready adults were found in 2010 (no larval sampling occurred in 2010) as well as collection of three age-0 juvenile lake sturgeon in bottom trawls fished downstream of the reef during July 2010. Spawning lake sturgeon showed no repeatable preference for any of the four particular substrate types but showed a high degree of preference for the island side of the channel, where faster water current velocities occurred. In 2009, overall lake sturgeon egg densities across all replicates averaged 102 m -2 and seven larvae were found in night drift-net samples. In 2010, average lake sturgeon egg density was 12 m -2 and three age-0 lake sturgeon averaging 120 mm TL were collected in bottom trawls in deepwater (∼8 m depth) downstream from the constructed reef. These results demonstrated successful reproduction by lake sturgeon on a man-made reef and suggested that additions and improvements to fish spawning habitat could enhance reproduction and early life history survival of lake sturgeon in the Detroit River.

Michigan;Ontario↗