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USGS2020

Biofilms provide new insight into pesticide occurrence in streams and links to aquatic ecological communities

Streambed sediment is commonly analyzed to assess occurrence of hydrophobic pesticides and risks to aquatic communities. However, stream biofilms also have the potential to accumulate pesticides and may be consumed by aquatic organisms. To better characterize risks to aquatic life, the U.S. Geological Survey Regional Stream Quality Assessment measured 93 current-use and 3 legacy pesticides in bed sediment and biofilm from 54 small streams in California across a range of land-use settings. On average, 4 times as many current-use pesticides were detected in biofilm at a site (median of 2) as in sediment (median of 0.5). Of 31 current-use pesticides detected, 20 were detected more frequently in biofilm than sediment and 10 equally frequently. Pyrethroids as a class were the most potentially toxic to benthic invertebrates, and of the nine pyrethroids detected, seven occurred more frequently in biofilm than sediment. We constructive General Additive Models to investigate relations between pesticides and six metrics of benthic community structure. Pesticides in biofilm improved fit in four of the six models, and pesticides in sediment improved fit in two. The results indicate that sampling of stream biofilms can complement bed-sediment sampling by identifying more current-use pesticides present and better estimating ecological risks.

California↗

USGS2008

Warming of the Indian Ocean threatens eastern and southern African food security but could be mitigated by agricultural development

Since 1980, the number of undernourished people in eastern and southern Africa has more than doubled. Rural development stalled and rural poverty expanded during the 1990s. Population growth remains very high, and declining per-capita agricultural capacity retards progress toward Millennium Development goals. Analyses of in situ station data and satellite observations of precipitation have identified another problematic trend: main growing-season rainfall receipts have diminished by ???15% in food-insecure countries clustered along the western rim of the Indian Ocean. Occurring during the main growing seasons in poor countries dependent on rain-fed agriculture, these declines are societally dangerous. Will they persist or intensify? Tracing moisture deficits upstream to an anthropogenically warming Indian Ocean leads us to conclude that further rainfall declines are likely. We present analyses suggesting that warming in the central Indian Ocean disrupts onshore moisture transports, reducing continental rainfall. Thus, late 20th-century anthropogenic Indian Ocean warming has probably already produced societally dangerous climate change by creating drought and social disruption in some of the world's most fragile food economies. We quantify the potential impacts of the observed precipitation and agricultural capacity trends by modeling 'millions of undernourished people' as a function of rainfall, population, cultivated area, seed, and fertilizer use. Persistence of current tendencies may result in a 50% increase in undernourished people by 2030. On the other hand, modest increases in per-capita agricultural productivity could more than offset the observed precipitation declines. Investing in agricultural development can help mitigate climate change while decreasing rural poverty and vulnerability. ?? 2008 by The National Academy of Sciences of the USA.

Proceedings of the National Academy of Sciences of↗

USGS1967

Geochemical evidence of present-day serpentinization

Ultrabasic ( p H > 11) water issues from some fresh ultramafic bodies. The properties of the ultrabasic solutions are believed to be due to current reactions yielding serpentine from primary olivines and pyroxenes. The low concentrations of divalent iron. divalent magnesium, and dissolved silica from the serpentinization require an increase in rock volume.

Science↗

USGS1991

Strain measurements and the potential for a great subduction earthquake off the coast of Washington

Geodetic measurements of deformation in northwestern Washington indicate that strain is accumulating at a rate close to that predicted by a model of the Cascadia subduction zone in which the plate interface underlying the continental slope and outer continental shelf is currently locked but the remainder of the interface slips continuously. Presumably this locked segment will eventually rupture in a great thrust earthquake with a down-dip extent greater than 100 kilometers.

Washington↗

USGS2020

Identifying and assessing priority transboundary aquifers along the United States- Mexico border

Many of the 15 million inhabitants along the United States-Mexico border derive fresh water from transboundary aquifers straddling and extending far beyond the political boundary separating the two countries. The previous lack of a large-scale cooperative and structured data collection effort and groundwater management strategy for the region has left border communities with little information on current and future groundwater supplies. In 2006, the U.S. Federal Government enacted the United States – Mexico Transboundary Aquifer Assessment Act (Public Law 109–448) to address this issue.

Chihuahua, New Mexico, Texas↗

USGS2022

Framework for the development of the Columbia River mainstem fish tissue and water quality monitoring program - Bonneville Dam to Canadian border

The Columbia River provides important cultural, economic, and ecological services to a significant portion of the United States. Anadromous and resident fish species and other wildlife are integrated into the cultural traditions of all Tribes in the Columbia River Basin. Salmon, lamprey, sturgeon, and resident fish are an integral part of Tribal religion, culture, and physical sustenance. Despite concerns about the effect of contaminants on the aquatic ecosystem, the disproportionate effects of contaminants on members of Tribal sovereignties, and the known effects of contaminants on species protected under the Endangered Species Act, efforts to address toxic chemical pollution in the Columbia River have been limited. The lack of a dedicated contaminant monitoring program impedes evaluation and decision making regarding the health of the Columbia River ecosystem, as well as human health for Tribal members and others that consume fish and other biota from the Columbia River. The purpose of this framework is to provide guidance for the development of a long-term program (Program) that provides the basis for assessing the status and trends of contaminants in fish, sediment, water, and invertebrates along the 962-kilometer length of the Columbia River from the Bonneville Dam upriver to the Canadian Border (Figure ES1). This framework will focus on four persistent and bioaccumulative classes of toxic contaminants: • Mercury • Polychlorinated biphenyls (PCBs) • Dichlorodiphenyltrichloroethane (DDT) • Polybrominated diphenyl ethers (PBDEs) Media of interest in this framework include anadromous and resident fish, sediment, invertebrates, biofilm, and surface water. Future consideration of additional contaminants could include pesticides, per or poly-fluoroalkyl substances, 6PPD-quinone, and contaminants of emerging concern (CECs), which comprises a diverse group of anthropogenic chemicals that include thousands of pharmaceuticals, hormones, illicit drugs, new pesticides, personal care products, flame retardants, artificial sweeteners, perfluorinated compounds, disinfection byproducts, ultraviolet filters, and other industrial chemicals. This framework includes the vision, goals, and objectives for the Program. The vision for the Program is that it will provide the basis for assessing the status and trends of contaminants in the Columbia River to guide ecosystem recovery resulting in clean, healthy fish for current and future generations . The goals of the Program are to 1) conduct long-term monitoring to assess the spatial and temporal status and trends of toxics in fish, water, sediment, and other potential media in the Columbia River mainstem, from Bonneville Dam to the Canadian Border in perpetuity, 2) stimulate conversion of science into action by providing information to facilitate future decision making that improves ecosystem function and reduces contaminants in all levels of the food chain, and 3) adaptively manage the Program to address new key questions, incorporate new and emerging science advancements, and respond to community information needs. To facilitate achieving these goals, this framework provides details on technical planning; community outreach and engagement; and adaptive management to promote understanding and improve future decision making over the long-term, including updating the Program with new and emerging science and community needs. Additionally, data associated with the Program will be made available to the public through the EPA Water Quality Exchange (https://www.epa.gov/waterdata/water-quality-data). Documents and other materials associated with the Program can be accessed via a website hosted by Yakama Nation Fisheries (https://yakamafish-nsn.gov/restore/projects/columbia-river-mainstem- water-quality-monitoring-program). Although the Program is limited to the Columbia River upstream of the Bonneville Dam, collaboration with other entities that monitor contaminants in the Columbia River Basin, including the Columbia River estuary below Bonneville Dam, are also an important component of outreach. Our goal is to encourage efforts to ensure data comparability across programs and recognize that the growth and adaptive management of the Program considers basin-wide monitoring developments.

Oregon, Washington↗

USGS1982

Test and calibration of the Digital World-Wide Standardized Seismograph

During the past decade there has been steady progress in the modernization of the global seismograph network operated by the U.S. Geological Survey (USGS). The World-Wide Standardized Seismograph Network (WWSSN) has been augmented by new stations with advanced instrumentation, including the Seismic Research Observatories (SRO) and the modified High-Gain Long-Period (ASRO) stations. One goal in the modernization effort has been to improve signal resolution in the long-period band. A second goal has been to generate a global digital data base to support contemporary computer-based analysis and research. In 1976, a Panel on Seismograph Networks was established by the Committee on Seismology of the National Academy of Sciences to review progress in network seismology and recommend actions that would lead to an improved global data base for seismology. One recommendation in the Panel report (Engdahl, 1977) called for upgrading selected WWSSN stations by the installation of digital recorders. This was viewed as an economical way of expanding the digital network, which had proven itself to be a very promising new tool for earthquake and explosion research. Funds for the development and assembly of 15 digital recorders were provided to the USGS by the Defense Advanced Research Projects Agency and an ad Inoc panel of scientists was convened by the Committee on Seismology to advise the USGS on the selection of stations to be upgraded and on data recording requirements, A total of 19 digital World-Wide Standardized Seismograph (DWWSS) systems will be operational when all are installed. The additional systems were made available through purchase by the USGS and other organizations; for example, the University of Bergen purchased and installed a DWWSS-type recorder and agreed to furnish the USGS with the data. A list of operational and planned DWWSS network stations is given in Table 1.1. As one might expect, the digital recorder turned out to be somewhat more sophisticated than the original concept. It was decided to record three components of long-period data continuously, three components of intermediateperiod data in an event mode, and the vertical-component short-period data in and event mode (with the capability of adding short-period horizontal channels in the future). Special amplifiers were developed for use with the WWSS seismometers, and a 16-bit fixed-point analog-to-digital converter was chosen to provide increased resolution (as opposed to a 16-bit gain-ranged encoder). The microprocessor-based digital recording systems were developed and assembled at the USGS Albuquerque Seismological Laboratory (ASL) and ASL-based technicians began installation at WWSSN stations in 1980. The current and proposed locations of the DWWSSN stations, together with other stations in the Global Digital Seismograph Network (GDSN), are shown on the map in Figure 1.1. A system was operated at Albuquerque for about 18 months, serving as a test bed for evaluation studies. Although the network hardware has been available for some time, the installation of the DWWSSN has proceeded slowly. The National Science Foundation supported installation of six stations and the USGS is funding installation of most of the others; however, the network completion date is conjectural because of funding uncertainties. The DWWSSN stations are supported with supplies and technical assistance from ASL (subject to availability of funds). Data recorded on magnetic tapes are mailed to ASL where they are reviewed for quality, then merged with other GDSN station data on the network-day tapes. Hoffman (1980) provides a description of the network-day tape format. Zirbes and Buland (1981) have developed and published user software for reading and interpreting the day tapes. This report will serve several purposes. One is to provide nominal system transfer functions and calibration information that are needed in the analysis of DWWSSN data. A second purpose is to report on an evaluation of operating characteristics (calibration stability, noise levels, and linearity) that may limit the usefulness of the data and to determine if modifications may be needed to improve the data. It is not an exhaustive study in this respect. We continue to depend mostly on data user feedback to point out deficiencies and we solicit comments whenever anomalies are observed in the data.

Open-File Report↗

USGS2022

Long-term ocean observing for international capacity development around tsunami early warning

The 2004 magnitude (M) 9.1 Sumatra-Andaman Islands earthquake in the Indian Ocean triggered the deadliest tsunami ever, killing more than 230,000 people. In response, the United Nations Educational, Scientific, and Cultural Organization (UNESCO) established three additional Intergovernmental Coordination Groups (ICGs) for the Tsunami and Other Coastal Hazards Early Warning System: for the Caribbean and Adjacent Regions (ICG/CARIBE-EWS), for the Indian Ocean, and for the Northeastern Atlantic, Mediterranean, and Connected Seas. Along with the ICG for the Pacific Ocean, which was established in 1965, one of the goals of the new ICGs was to improve earthquake and tsunami monitoring and early warning. This need was further demonstrated by the 2011 Great East Japan (Tōhoku-oki) earthquake and tsunami, which killed more than 20,000 people, and other destructive tsunamis that occurred in the Solomon Islands, Samoa, Tonga, Chile, Indonesia, and Peru. In response to the call to action by the UN Decade of Ocean Science for Sustainable Development (2021–2030), as well as the desired safe ocean outcome (von Hillebrandt-Andrade et al., 2021), the Intergovernmental Oceanographic Commission (IOC) of UNESCO approved the Ocean Decade Tsunami Programme in June 2021. One of its goals is to develop the capability to issue actionable alerts for tsunamis from all sources with minimum uncertainty within 10 minutes (Angove et al., 2019). While laudable, this goal presents complexities. Currently, warning depends on quick detection as well as the location and initial magnitude estimates of an earthquake that may generate a tsunami. Other factors that affect tsunamis, such as the faulting mechanism (how the faults slide past each other) and areal extent of the earthquake, currently take at least 20–30 minutes to forecast and are still subject to large uncertainties. Hence, agencies charged with tsunami early warning need to broadcast public alerts within minutes after an earthquake occurs but may struggle to meet this 10-minute goal without further technological advances, some of which are outlined in this article. To reduce loss of life through adequate tsunami warning requires global ocean-based seismic, sea level, and geodetic initiatives to detect high-impact earthquakes and tsunamis, combined with sufficient communication and education so that people know how to respond when they receive alerts and warnings. The United Nations International Strategy for Disaster Reduction defines an early warning system as “a set of capacities needed to generate and disseminate timely and meaningful warning information to enable individuals, communities, and organizations threatened by a hazard to prepare and to act appropriately and in sufficient time to reduce the possibility of harm or loss” (UNISDR, 2012). In short, a successful early warning system requires technology coupled with human factors (Kelman and Glantz, 2014). In this article, we explore case studies from Japan and Canada, where scientists are leading the way in incorporating ocean observing capabilities in their early warning systems. We also explore advancements and challenges in the Caribbean, an area with a complex tectonic environment that would benefit greatly from increased global ocean observing capabilities. We also explore physical and social science interventions necessary to reduce loss of life.

Oceanography↗

USGS2001

Determination of nitrogen in coal macerals using electron microprobe technique-experimental procedure

This paper discusses nitrogen determination with the Cameca SX50 electron microprobe using PCO as an analyzing crystal. A set of conditions using differing accelerating voltages, beam currents, beam sizes, and counting times were tested to determine parameters that would give the most reliable nitrogen determination. The results suggest that, for the instrumentation used, 10 kV, current 20 nA, and a counting time of 20 s provides the most reliable nitrogen determination, with a much lower detection limit than the typical concentration of this element in coal. The study demonstrates that the electron microprobe technique can be used to determine the nitrogen content of coal macerals successfully and accurately. ?? 2001 Elsevier Science B.V. All rights reserved.

International Journal of Coal Geology↗

USGS2008

Introduction to the U.S. Geological Survey National Water-Quality Assessment (NAWQA) of ground-water quality trends and comparison to other national programs

Assessment of temporal trends in national ground-water quality networks are rarely published in scientific journals. This is partly due to the fact that long-term data from these types of networks are uncommon and because many national monitoring networks are not driven by hypotheses that can be easily incorporated into scientific research. The U.S. Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) since 1991 has to date (2006) concentrated on occurrence of contaminants because sufficient data for trend analysis is only just becoming available. This paper introduces the first set of trend assessments from NAWQA and provides an assessment of the success of the program. On a national scale, nitrate concentrations in ground water have generally increased from 1988 to 2004, but trends in pesticide concentrations are less apparent. Regionally, the studies showed high nitrate concentrations and frequent pesticide detections are linked to agricultural use of fertilizers and pesticides. Most of these areas showed increases in nitrate concentration within the last decade, and these increases are associated with oxic-geochemical conditions and well-drained soils. The current NAWQA plan for collecting data to define trends needs to be constantly reevaluated to determine if the approach fulfills the expected outcome. To assist this evaluation, a comparison of NAWQA to other national ground-water quality programs was undertaken. The design and spatial extent of each national program depend on many factors, including current and long-term budgets, purpose of the program, size of the country, and diversity of aquifer types. Comparison of NAWQA to nine other national programs shows a great diversity in program designs, but indicates that different approaches can achieve similar and equally important goals. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Conference Paper↗

USGS2015

Porphyry copper assessment of northeast Asia: Far East Russia and northeasternmost China: Chapter W in Global mineral resource assessment

The U.S. Geological Survey assesses resources (mineral, energy, water, environmental, and biologic) at regional, national, and global scales to provide science in support of land management and decision making. Mineral resource assessments provide a synthesis of available information about where mineral deposits are known and suspected to be in the Earth’s crust, which commodities may be present, and estimates of amounts of resources in undiscovered deposits. A probabilistic mineral resource assessment of undiscovered resources associated with porphyry copper deposits in northeast Asia—composed mainly of Far East Russia and a small part of northeasternmost China—was completed as part of a global mineral resource assessment. Porphyry copper deposits are the main source of copper globally. Russia is an important source of copper, consistently ranking as 6th, 7th, or 8th in world production since 2000, and ranked 7th in 2014. Most of this production has been from magmatic copper-nickel-platinum-group element, volcanogenic massive sulfide, and sediment-hosted copper deposit types. The purpose of the assessment was to (1) compile a database of known deposits and significant prospects, (2) delineate permissive areas (tracts) for undiscovered porphyry copper deposits that may be present in the upper kilometer of the Earth’s crust, and (3) provide probabilistic estimates of amounts of copper (Cu), molybdenum (Mo), gold (Au), and silver (Ag) that could be contained in undiscovered porphyry copper deposits in the tracts. The assessment was completed by the U.S. Geological Survey in collaboration with geologists from the Russian Academy of Sciences and industry consultants. The database of known deposits, significant prospects, and prospects includes an inventory of mineral resources in two known porphyry copper deposits, as well as key characteristics derived from available exploration reports for 70 significant porphyry copper prospects and 86 other prospects. Resource and exploration and development activity are updated with information current through February 2013.

Scientific Investigations Report↗

USGS2013

Ecosystem stressors in southern Nevada

Southern Nevada ecosystems and their associated resources are subject to a number of global and regional/local stressors that are affecting the sustainability of the region. Global stressors include elevated carbon dioxide (CO 2 ) concentrations and associated changes in temperature and precipitation patterns and amount, solar radiation, and nutrient cycles (Smith and others 2009b). Global stressors are ubiquitous in nature and interact both directly and indirectly with regional or local stressors. Regional/local stressors in southern Nevada include: population growth and urbanization and associated increases in nitrogen deposition, energy development, water development, and recreation; increased effects of insects and disease; ongoing effects of livestock, wild horse and burro grazing; new and expanding invasive species; and altered fire regimes. This chapter provides background information on the stressors affecting southern Nevada's ecosystems that is needed to address Goal 1.0 in the SNAP Science Research Strategy, which is to restore, sustain, and enhance southern Nevada's ecosystems (Turner and others 2009). Human population growth and changes in land use strongly affect the type and magnitude of local/regional stressors. From 1960 to 2010, Nevada's growth rate was the highest in the nation (www.census.gov/prod/cen2010/briefs/c2010br-01.pdf). Clark County has experienced particularly high growth, with a population increase of greater than 40 percent since the 2000 census. Factors like land ownership, historic and current land use, proximity to human and energy developments, and desirability for recreation all influence the level of human-caused stress. The strong elevation/climate gradients and large difference in the environmental characteristics of southern Nevada ecosystems (fig. 1.2; Chapter 1) have a major influence on both patterns of land use and the dominant stressors for different ecosystem types. Shifts in land use related to population growth, urbanization, and energy development and largely focused in lower elevation ecosystems including sagebursh, blackbrush and shadscale, and Mojave Desert scrub. Water divisions influence riparian/aquatic ecosystems and springs, while groundwater pumping also has the potential to affect ecosystems that characterize lower valleys including Mojave Desert scrub. Recreational uses influence all ecosystems, and wild horse and burro use and livestock grazing affect all but alpine and subalpine ecosystems. Insects and disease, as well as invasive species are widespread stressors. Fire is limited to ecosystems with sufficient fuels to carry fire and is strongly influence by invasive species in lower elevation Mojave Desert scrub, blackbrush and shadscale, and sagebursh ecosystems. This chapter address aspects of several of the Goals and Sub-goals listed in the SNAP Science Research Strategy (table 1.3; Turner and others 2009). Altered fire regimes, invasive species, land use practices, and management actions are addressed in Goal 1 -- Sustain, Restore, and Enhance Southern Nevada's Ecosystems. The effects of these stressors on sensitive species and habitat are specifically addressed in Sub-goal 1.4 -- Sustain and Enhance Southern Nevada's Biotic Communities, to Preserve Biodiversity and Maintain Populations. Anthropogenic factors, such a recreation and urbanization, are referred to in Goal 2-- Provide for Responsible Use of Southern Nevada;s Lands in a Manner that Preserve Heritage Resources and Promotes an Understanding of Human Interaction with the Landscape.

Nevada↗

USGS2000

Predicting the physical effects of relocating Boston's sewage outfall

Boston is scheduled to cease discharge of sewage effluent in Boston Harbor in Spring 2000 and begin discharge at a site 14 km offshore in Massachusetts Bay in a water depth of about 30 m. The effects of this outfall relocation on effluent dilution, salinity and circulation are predicted with a three-dimensional hydrodynamic model. The simulations predict that the new bay outfall will greatly decrease effluent concentrations in Boston Harbor (relative to the harbour outfall) and will not significantly change mean effluent concentrations over most of Massachusetts Bay. With the harbour outfall, previous observations and these simulations show that effluent concentrations exceed 0??5% throughout the harbour, with a harbour wide average of 1-2%. With the bay outfall, effluent concentrations exceed 0??5% only within a few km of the new outfall, and harbour concentrations drop to 0??1-0??2%, a 10-fold reduction. During unstratified winter conditions, the local increase in effluent concentration at the bay outfall site is predicted to exist throughout the water column. During stratified summer conditions, however, effluent released at the sea bed rises and is trapped beneath the pycnocline. The local increase in effluent concentration is limited to the lower layer, and as a result, surface layer effluent concentrations in the vicinity of the new outfall site are predicted to decrease (relative to the harbour outfall) during the summer. Slight changes are predicted for the salinity and circulation fields. Removing the fresh water associated with the effluent discharge in Boston Harbor is predicted to increase the mean salinity of the harbour by 0??5 and decrease the mean salinity by 0??10-0??15 within 2-3 km of the outfall. Relative to the existing mean flow, the buoyant discharge at the new outfall is predicted to generate density-driven mean currents of 2-4 cm s-1 that spiral out in a clockwise motion at the surface during winter and at the pycnocline (15-20 m depth) during summer. Compensating counterclockwise currents are predicted to spiral in toward the source at the bottom. Because the scale of the residual current structure induced by the new discharge is comparable to or smaller than typical subtidal water parcel excursions, Lagrangian trajectories will not follow the Eulerian residual flow. Thus, mean currents measured from moorings within 5 km of the bay outfall site will be more useful for model comparison than to indicate net transport pathways.

Massachusetts↗

USGS2001

Online bibliographic sources in hydrology

Traditional commercial bibliographic databases and indexes provide some access to hydrology materials produced by the government; however, these sources do not provide comprehensive coverage of relevant hydrologic publications. This paper discusses bibliographic information available from the federal government and state geological surveys, water resources agencies, and depositories. In addition to information in these databases, the paper describes the scope, styles of citing, subject terminology, and the ways these information sources are currently being searched, formally and informally, by hydrologists. Information available from the federal and state agencies and from the state depositories might be missed by limiting searches to commercially distributed databases.

Science and Technology Libraries↗

USGS2011

Paper birch: Sentinels of climate change in the Niobrara River Valley, Nebraska

The Niobrara River Valley in the northern Great Plains supports scattered stands of paper birch ( Betula papyrifera Marsh), a species more typical of boreal forests. These birch stands are considered to be relictual populations that have persisted since the end of the Wisconsin glaciation. Localized summer microclimates have likely facilitated the persistence of birch populations in a region otherwise unsuitable for the species. Dieback of canopy-sized birch has been observed throughout the valley in recent years, although no onset dates are documented. Changes in spring weather patterns may be causing rootlet injury so that trees die in spite of the still-cool summer microclimates. Current weather patterns, combined with little evidence of recruitment of young birch and great geographic distances from potential immigrant sources, make the future persistence of birch in the Niobrara River Valley stands uncertain.

Nebraska↗

USGS2004

Suwannee river basin and estuary integrated science workshop: September 22-24, 2004 Cedar Key, Florida

In response to the growing number of environmental concerns in the mostly pristine Suwannee River Basin and the Suwannee River Estuary system, the States of Florida and Georgia, the Federal government, and other local organizations have identified the Suwannee River as an ecosystem in need of protection because of its unique biota and important water resources. Organizations with vested interests in the region formed a coalition, the Suwannee Basin Interagency Alliance (SBIA), whose goals are to promote coordination in the identification, management, and scientific knowledge of the natural resources in the basin and estuary. To date, an integrated assessment of the physical, biological, and water resources has not been completed. A holistic, multi-disciplinary approach is being pursued to address the research needs in the basin and estuary and to provide supportive data for meeting management objectives of the entire ecosystem. The USGS is well situated to focus on the larger concerns of the basin and estuary by addressing specific research questions linking water supply and quality to ecosystem function and health across county and state boundaries. A strategic plan is being prepared in cooperation with Federal, State, and local agencies to identify and implement studies to address the most compelling research issues and management questions, and to conduct fundamental environmental monitoring studies. The USGS, Suwannee River Water Management District and the Florida Marine Research Institute are co-sponsoring this scientific workshop on the Suwannee River Basin and Estuary to: Discuss current and past research findings, Identify information gaps and research priorities, and Develop an action plan for coordinated and relevant research activities in the future. This workshop builds on the highly successful basin-wide conference sponsored by the Suwannee Basin Interagency Alliance that was held three years ago in Live Oak, Florida. This years workshop will focus on identifying information needs and priorities and developing partnerships. The USGS is seeking to define the role of the USGS Florida Integrated Science Center (FISC) in conducting integrated research in the Suwannee River Basin, and to establish a cooperative program with other agencies. Participants interested in river, floodplain, springs, estuary, or basin-wide issues are encouraged to attend. Topics for this years workshop include: Water quality and geochemistry: nutrient enrichment, reduction of nutrient loading to ground water, contaminants, and land use, Hydrogeology: interactions among ground water, surface water and ecosystem, modeling, and baseline mapping, Ecosystem dynamics: structure, process, species, and habitats (estuarine, riverine, floodplain, and wetland), and Information management: data sharing, database development, geographic information system (GIS), and basin-wide models.

Open-File Report↗

USGS2019

Spatially-structured statistical network models for landscape genetics

A basic understanding of how the landscape impedes, or creates resistance to, the dispersal of organisms and hence gene flow is paramount for successful conservation science and management. Spatially structured ecological networks are often used to represent spatial landscape‐genetic relationships, where nodes represent individuals or populations and resistance to movement is represented using non‐binary edge weights. Weights are typically assigned or estimated by the user, rather than observed, and validating such weights is challenging. We provide a synthesis of current methods used to estimate edge weights and an overview of common model types, stressing the advantages and disadvantages of each approach and their ability to model landscape‐genetic data. We further explore a set of spatial‐statistical methods that provide ecologists with alternative approaches for modeling spatially explicit processes that may affect genetic structure. This includes an overview of spatial autoregressive models, with a particular focus on how correlation and partial correlation are used to represent neighborhood structure with the inverse of the covariance matrix (i.e., precision matrix). We then demonstrate how to model resistance by specifying an appropriate statistical model on the nodes, conditioned on the edge weights, through the precision matrix. This integration of network ecology and spatial statistics provides a practical analytical framework for landscape‐genetic studies. The results can be used to make statistical inferences about the relative importance of individual landscape characteristics, such as the vegetative cover, hillslope, or the presence of roads or rivers, on gene flow. In addition, the R code we include allows readers to explore landscape‐genetic structure in their own datasets, which will potentially provide new insights into the evolutionary processes that generated ecological networks, as well as valuable information about the optimal characteristics of conservation corridors.

Ecological Monographs↗

USGS2018

Understanding the influence of nutrients on stream ecosystems in agricultural landscapes

Sustaining the quality of the Nation’s water resources and the health of our diverse ecosystems depends on the availability of sound water-resources data and information to develop effective, science-based policies. Effective management of water resources also brings more certainty and efficiency to important economic sectors. Taken together, these actions lead to immediate and long-term economic, social, and environmental benefits that make a difference to the lives of the almost 400 million people projected to live in the United States by 2050. In 1991, Congress established the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) to address where, when, why, and how the Nation’s water quality has changed, or is likely to change in the future, in response to human activities and natural factors. Since then, NAWQA has been a leading source of scientific data and knowledge used by national, regional, State, and local agencies to develop science-based policies and management strategies to improve and protect water resources used for drinking water, recreation, irrigation, energy development, and ecosystem needs ( https://water.usgs.gov/nawqa/applications/ ). Plans for the third decade of NAWQA (2013–23) address priority water-quality issues and science needs identified by NAWQA stakeholders, such as the Advisory Committee on Water Information and the National Research Council, and are designed to meet increasing challenges related to population growth, increasing needs for clean water, and changing land-use and weather patterns. Excess nutrients are a pervasive problem of streams, lakes, and coastal waters. The current report, “The Quality of Our Nation’s Waters—Understanding the Effects of Nutrients on Stream Ecosystems in Agricultural Landscapes,” presents a summary of results from USGS investigations conducted from 2003 to 2011 on processes that influence nutrients and how nutrient enrichment can alter biological components of agricultural streams. This study included collecting data from 232 sites distributed among eight study areas. This report summarizes findings on processes that influence nutrients and how nutrient enrichment can alter biological communities in agricultural streams. These findings are relevant to local, State, regional, and national decision-makers involved in efforts to (1) better understand the influence of nutrients on agricultural streams, (2) develop nutrient criteria for streams and rivers, (3) reduce nutrients to streams and downstream receiving waters, and (4) develop tools for tracking nutrient and biological conditions following nutrient reduction strategies. All NAWQA reports are available online at https://water.usgs.gov/nawqa/bib/ . We hope this publication will provide you with insights and information to meet your water-resource needs and will foster increased citizen awareness and involvement in the protection and restoration of our Nation’s waters. The information in this report is intended primarily for those interested or involved in resource management and protection, conservation, regulation, and policymaking at the regional and national levels.

Central Columbia-Yakima River Basins, Great River ↗