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At least 595 records · Page 33Linked to original sources
USGS2006

The importance of diverse data types to calibrate a watershed model of the Trout Lake Basin, Northern Wisconsin, USA

As part of the USGS Water, Energy, and Biogeochemical Budgets project and the NSF Long-Term Ecological Research work, a parameter estimation code was used to calibrate a deterministic groundwater flow model of the Trout Lake Basin in northern Wisconsin. Observations included traditional calibration targets (head, lake stage, and baseflow observations) as well as unconventional targets such as groundwater flows to and from lakes, depth of a lake water plume, and time of travel. The unconventional data types were important for parameter estimation convergence and allowed the development of a more detailed parameterization capable of resolving model objectives with well-constrained parameter values. Independent estimates of groundwater inflow to lakes were most important for constraining lakebed leakance and the depth of the lake water plume was important for determining hydraulic conductivity and conceptual aquifer layering. The most important target overall, however, was a conventional regional baseflow target that led to correct distribution of flow between sub-basins and the regional system during model calibration. The use of an automated parameter estimation code: (1) facilitated the calibration process by providing a quantitative assessment of the model's ability to match disparate observed data types; and (2) allowed assessment of the influence of observed targets on the calibration process. The model calibration required the use of a 'universal' parameter estimation code in order to include all types of observations in the objective function. The methods described in this paper help address issues of watershed complexity and non-uniqueness common to deterministic watershed models. ?? 2005 Elsevier B.V. All rights reserved.

Journal of Hydrology↗
USGS2016

VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation

Underlying mutation rates and other evolutionary forces shape the population structure of bacteria in nature. Although easily overlooked, similar forces are at work in the laboratory and may influence observed mutations. Here, we investigated tissue samples and Yersinia pestis isolates from a rodent laboratory challenge with strain CO92 using whole genome sequencing and multi-locus variable-number tandem repeat (VNTR) analysis (MLVA). We identified six VNTR mutations that were found to have occurred in vitro during laboratory cultivation rather than in vivo during the rodent challenge. In contrast, no single nucleotide polymorphism (SNP) mutations were observed, either in vivo or in vitro . These results were consistent with previously published mutation rates and the calculated number of Y. pestis generations that occurred during the in vitro versus the in vivo portions of the experiment. When genotyping disease outbreaks, the potential for in vitro mutations should be considered, particularly when highly variable genetic markers such as VNTRs are used.

Infection, Genetics and Evolution↗
USGS2017

A effective DNA vaccine against diverse genotype J infectious hematopoietic necrosis virus strains prevalent in China

Infectious hematopoietic necrosis virus (IHNV) is the most important pathogen threatening the aquaculture of salmonid fish in China. In this study, a DNA vaccine, designated pIHNch-G, was constructed with the glycoprotein (G) gene of a Chinese IHNV isolate SD-12 (also called Sn1203) of genotype J. The minimal dose of vaccine required, the expression of the Mx-1 gene in the muscle (vaccine delivery site) and anterior kidney, and the titers of the neutralizing antibodies produced were used to evaluate the vaccine efficacy. To assess the potential utility of the vaccine in controlling IHNV throughout China, the cross protective efficacy of the vaccine was determined by challenging fish with a broad range of IHNV strains from different geographic locations in China. A single 100 ng dose of the vaccine conferred almost full protection to rainbow trout fry (3 g) against waterborne or intraperitoneal injection challenge with IHNV strain SD-12 as early as 4 days post-vaccination (d.p.v.), and significant protection was still observed at 180 d.p.v. Intragenogroup challenges showed that the DNA vaccine provided similar protection to the fish against all the Chinese IHNV isolates tested, suggesting that the vaccine can be widely used in China. Mx-1 gene expression was significantly upregulated in the muscle tissue (vaccine delivery site) and anterior kidney in the vaccinated rainbow trout at both 4 and 7 d.p.v. Similar levels of neutralizing antibodies were determined with each of the Chinese IHNV strains at 60 and 180 d.p.v. This DNA vaccine should play an important role in the control of IHN in China.

Vaccine↗
USGS2002

Trophic strategies, animal diversity and body size

A primary difference between predators and parasites is the number of victims that an individual attacks throughout a life-history stage. A key division within natural enemies is whether a successful attack eliminates the fitness of the prey or the host. A third distinctive axis for parasites is whether the host must die to further parasite development. The presence or absence of intensity-dependent pathology is a fourth factor that separates macroparasites from microparasites; this also distinguishes between social and solitary predators. Combining these four dichotomies defines seven types of parasitism, seven corresponding parasites, three forms of predation and, when one considers obligate and facultative combinations of these forms, four types of predator. Here, we argue that the energetics underlying the relative and absolute sizes of natural enemies and their victims is the primary selective factor responsible for the evolution of these different trophic strategies.

Trends in Ecology and Evolution↗
USGS2006

Firm size diversity, functional richness, and resilience

This paper applies recent advances in ecology to our understanding of firm development, sustainability, and economic development. The ecological literature indicates that the greater the functional richness of species in a system, the greater its resilience - that is, its ability to persist in the face of substantial changes in the environment. This paper focuses on the effects of functional richness across firm size on the ability of industries to survive in the face of economic change. Our results indicate that industries with a richness of industrial functions are more resilient to employment volatility. ?? 2006 Cambridge University Press.

Environment and Development Economics↗
USGS1997

Anaerobic degradation of benzene in diverse anoxic environments

Benzene has often been observed to be resistant to microbial degradation under anoxic conditions. A number of recent studies, however, have demonstrated that anaerobic benzene utilization can occur. This study extends the previous reports of anaerobic benzene degradation to sediments that varied with respect to contamination input, predominant redox condition, and salinity. In spite of differences in methodology, microbial degradation of benzene was noted in slurries constructed with sediments from various geographical locations and range from aquifer sands to fine-grained estuarine muds, under methanogenic, sulfate-reducing, and iron-reducing conditions. In aquifer sediments under methanogenic conditions, benzene loss was concomitant with methane production, and microbial utilization of [ 14 C]benzene yielded 14 CO 2 and 14 CH 4 . In slurries with estuarine and aquifer sediments under sulfate-reducing conditions, the loss of sulfate in amounts consistent with the stoichiometric degradation of benzene or the conversion of [ 14 C]benzene to 14 CO 2 indicates that benzene was mineralized. Benzene loss also occurred in the presence of Fe(III) in sediments from freshwater environments. Microbial benzene utilization, however, was not observed under denitrifying conditions. These results indicate that the potential for the anaerobic degradation of benzene, which was once thought to be resistant to non-oxygenase attack, exists in a variety of aquatic sediments from widely distributed locations.

Environmental Science & Technology↗
USGS1997

A reconnaissance study of oxygen, hydrogen and strontium isotopes in geochemically diverse lakes, Western Nebraska, USA

Reconnaissance ??18O,, ??D, and ??87Sr data for fifteen lakes in the Western Lakes Region of the Sand Hills of Nebraska indicate dynamic hydrologic systems. The rather narrow range of ??87Sr from lake water (1.1 to 2.1) and groundwater (0.9 to 1.7) indicates that the groundwater is generally unradiogenic. Groundwater residence times and relatively unradiogenic volcanic ash within the dune sediments control the ??87Sr values. Based on the mutual variations of ??18O and ??D, the lakes can be divided into three groups. In Group 1, both ??18O and ??D values increase from spring to fall. The ??18O and ??D values in Group 2 decreased from spring to fall. Group 3 are ephemeral lakes that went dry some time during 1992. The data and isotopic modeling show that variations in the ratio of evaporation relative to groundwater inflow, local humidity conditions, and the ??(a) has substantial influence on the isotopic composition. In addition, isotopic behavior in ephemeral hakes can be rather unusual because of the changing activities of water and mineral precipitation and redissolution. The annual and interannual isotopic variability of these lakes which is reflected in the paleonvironmental indicators may be the rule rather than the exception in these types of systems.

Journal of Paleolimnology↗
USGS2001

Economic development and conservation of biological and cultural diversity in Yunnan Province, China

Chinese and American scientists are co-operating to develop concepts, strategies, agreements, and proposals in support of an economic development and sustainable ecosystems project in Yunnan Province, People's Republic of China. Yunnan's Provincial Government has initiated a major programme to develop and further utilise its biological resources to help improve economic conditions for its citizens. They are co-operating with the US Geological Survey (USGS) on evaluation and management of biological resources so economic development will be compatible with sustainable ecological systems. Scientists from the USGS and co-operating universities will provide expertise on synthesising biological data, conducting a Gap Analysis for the Province, evaluating innovative economic opportunities, and designing an effective education, training, and outreach programme.

Environmental Development and Sustainability↗
USGS2011

Imperfect science: Uncertainty, diversity, and experts

Seismic safety issues related to nuclear reactors in the eastern United States pose special challenges to the Earth and engineering sciences, given the severe consequences that can attend even very infrequent earthquakes. To deal with low-probability, potentially damaging ground motions, two major probabilistic seismic hazard analyses were conducted in the 1980s for nuclear reactors in the eastern United States, that part of the country east of the Rocky Mountains. The first study was performed by the Lawrence Livermore National Laboratory (LLNL) [ Bernreuter et al ., 1989] and was supported by the U.S. Nuclear Regulatory Commission (USNRC). The second was commissioned by the Seismicity Owners Group of the Electric Power Research Institute (EPRI) , [1989]. These studies generally agreed in terms of median hazard estimates, but mean hazard estimates at individual sites varied considerably, in several cases by 2 orders of magnitude or more.

Eos, Transactions, American Geophysical Union↗
USGS2012

Uniformity and diversity in the composition of mineralizing fluids from hydrothermal vents on the southern Juan de Fuca Ridge

Abundances of Li, Na, K, Rb, Ca, Sr, Ba, Mn, Fe, Zn, and Si have been determined in fluid samples from seven vents located in three areas on the southern Juan de Fuca Ridge. The hydrothermal component estimated from the Mg contents of the samples ranges from 7% to 76%. Concentrations of Fe and Si, among other elements, in acid-stabilized solutions appear to be generally representative of the parental hydrothermal fluids, but some Zn determinations and most Ba values appear to be too low. Thermodynamic calculations indicate that the acidified samples remain supersaturated with respect to silica, barite, and pyrite; unacidified samples are supersaturated, in addition, with respect to ZnS, FeS, and many silicate phases. Within the constraints of limited sampling there appear to be differences in fluid compositions both within and between the three vent areas. Some uniform differences in the elemental abundances predicted for hydrothermal end-member fluids might be due to inmixing of fresh seawater at depth in the hydrothermal system. The Juan de Fuca hydrothermal fluids contain more Fe but otherwise have relative elemental abundances fairly similar to those in 13°N (East Pacific Rise) fluids, albeit at higher levels. In contrast, fluids from 21°N (East Pacific Rise) and Galapagos have lower K/Rb and much lower Sr and Na abundances; these compositional features probably result from interaction of these fluids with a different mineral assemblage, possibly more mature greenstone.

Journal of Geophysical Research Solid Earth↗
USGS2012

Order and diversity in the modes of circum-Pacific earthquake recurrence

Recurrence characteristics of great circum-Pacific earthquakes and determinations of spatial distribution of seismic moment release are surveyed in order to delineate their general features and relate earthquake slip distribution to models of recurrent rupture. As noted by others, the pattern of moment release is typically very irregular, with strong concentrations in a few isolated regions of a much larger aftershock zone. Despite this complexity, rupture nucleation is notably systematic, with mainshock epicenter showing a strong tendency to locate in or immediately adjacent to identified regions of high moment release. This generalization suggests that earthquake recurrence is more likely to be controlled by maximum rather than average fault slip. Well-documented case histories from twelve plate boundary regions demonstrate that seismic strain release tends to be temporally well-ordered, while source dimensions, slip, and cumulative moment release vary considerably from cycle to cycle. On none of the segments studied do earthquakes consistently recur in nearly identical events. Instead, individual great earthquakes differ significantly from cycle to cycle or rerupture takes place in a sequence of two or more smaller events. Despite these differences the duration of the seismic cycle is approximately uniform. Furthermore, when strain release occurs in a sequence of large earthquakes, these events take place towards the end of the cycle and occur with increasing rupture length and magnitude. These ordered and irregular features of earthquake recurrence argue for the existence of corresponding elements on plate boundary faults. The ordered characteristics are identified with zones of concentrated moment release that slip comparable amounts in each cycle and have high shear strength. The irregular features are associated with intervening weaker regions that move in response to the stress concentration of dynamic rupture and slip by differing amounts in each event. Although these mechanistic associations are indirect and tentative, the features of recurrent behavior documented here have implications for long-term earthquake hazard assessment that are not dependent on the models proposed to explain them. Chief among these are the cycle-to-cycle differences among gap-filling events and the absence of shocks that fill major slip-deficient regions early in the seismic cycle.

Journal of Geophysical Research Solid Earth↗
USGS2018

Greenhouse gas emissions from diverse Arctic Alaskan lakes are dominated by young carbon

Climate-sensitive Arctic lakes have been identified as conduits for ancient permafrost-carbon (C) emissions and as such accelerate warming. However, the environmental factors that control emission pathways and their sources are unclear; this complicates upscaling, forecasting and climate-impact-assessment efforts. Here we show that current whole-lake CH 4 and CO 2 emissions from widespread lakes in Arctic Alaska primarily originate from organic matter fixed within the past 3–4 millennia (modern to 3,300 ± 70 years before the present), and not from Pleistocene permafrost C. Furthermore, almost 100% of the annual diffusive C flux is emitted as CO 2 . Although the lakes mostly processed younger C (89 ± 3% of total C emissions), minor contributions from ancient C sources were two times greater in fine-textured versus coarse-textured Pleistocene sediments, which emphasizes the importance of the underlying geological substrate in current and future emissions. This spatially extensive survey considered the environmental and temporal variability necessary to monitor and forecast the fate of ancient permafrost C as Arctic warming progresses.

Alaska↗
USGS2024

Species diversity links land consolidation to rodent disease

Four decades of data on rodent species composition and hantavirus prevalence across a changing urban–agricultural landscape demonstrate that long-term data are key for understanding links between biodiversity loss and disease dynamics

Nature Ecology & Evolution↗
USGS2022

Diverse tsunamigenesis triggered by the Hunga Tonga-Hunga Ha’apai eruption

On the evening of 15 January 2022, the Hunga Tonga-Hunga Ha’apai volcano 1 unleashed a violent underwater eruption, blanketing the surrounding land masses in ash and debris . The eruption generated tsunamis observed around the world. An event of this type last occurred in 1883 during the eruption of Krakatau , and thus we have the first observations of a tsunami from a large emergent volcanic eruption captured with modern instrumentation. Here we show that the explosive eruption generated waves through multiple mechanisms, including: (1) air–sea coupling with the initial and powerful shock wave radiating out from the explosion in the immediate vicinity of the eruption; (2) collapse of the water cavity created by the underwater explosion; and (3) air–sea coupling with the air-pressure pulse that circled the Earth several times, leading to a global tsunami. In the near field, tsunami impacts are strongly controlled by the water-cavity source whereas the far-field tsunami, which was unusually persistent, can be largely described by the air-pressure pulse mechanism. Catastrophic damage in some harbours in the far field was averted by just tens of centimetres, implying that a modest sea level rise combined with a future, similar event would lead to a step-function increase in impacts on infrastructure. Piecing together the complexity of this event has broad implications for coastal hazards in similar geophysical settings, suggesting a currently neglected source of global tsunamis.

Nature↗
USGS2024

Ursids evolved dietary diversity without major alterations in metabolic rates

The diets of the eight species of ursids range from carnivory (e.g., polar bears, Ursus maritimus ) to insectivory (e.g., sloth bears, Melursus ursinus ), omnivory (e.g., brown bears, U. arctos ), and herbivory (e.g., giant pandas, Ailuropoda melanoleuca ). Dietary energy availability ranges from the high-fat, highly digestible, calorically dense diet of polar bears (~ 6.4 kcal digestible energy/g fresh weight) to the high-fiber, poorly digestible, calorically restricted diet (~ 0.7) of giant pandas. Thus, ursids provide the opportunity to examine the extent to which dietary energy drives evolution of energy metabolism in a closely related group of animals. We measured the daily energy expenditure (DEE) of captive brown bears in a relatively large, zoo-type enclosure and compared those values to previously published results on captive brown bears, captive and free-ranging polar bears, and captive and free-ranging giant pandas. We found that all three species have similar mass-specific DEE when travel distances and energy intake are normalized even though their diets differ dramatically and phylogenetic lineages are separated by millions of years. For giant pandas, the ability to engage in low-cost stationary foraging relative to more wide-ranging bears likely provided the necessary energy savings to become bamboo specialists without greatly altering their metabolic rate.

Scientific Reports↗
USGS2002

Loss of genetic diversity in sea otters (Enhydra lutris) associated with the fur trade of the 18th and 19th centuries

Sea otter ( Enhydra lutris ) populations experienced widespread reduction and extirpation due to the fur trade of the 18th and 19th centuries. We examined genetic variation within four microsatellite markers and the mitochondrial DNA (mtDNA) d -loop in one prefur trade population and compared it to five modern populations to determine potential losses in genetic variation. While mtDNA sequence variability was low within both modern and extinct populations, analysis of microsatellite allelic data revealed that the prefur trade population had significantly more variation than all the extant sea otter populations. Reduced genetic variation may lead to inbreeding depression and we believe sea otter populations should be closely monitored for potential associated negative effects.

Molecular Ecology↗
USGS2001

Early post-fire succession in California chaparral: Changes in diversity, density, cover and biomass

For four consecutive years, following the fires in November 1993, temporal variations in species richness, cover and biomass of component plant groups in early post-fire chaparral succession were monitored on different aspects at the Stunt Ranch Santa Monica Mountains Reserve, southern California. Plant groups were categorized based on growth form, life form, ability to fix nitrogen, geographic origin and regeneration strategies. North-facing slopes exhibited higher species richness, higher species turnover rate over time and faster vegetation recovery in terms of biomass accumulation and return to pre-fire species composition. This was probably due to higher species richness and biomass of nitrogen-fixing species found on north-facing slopes in comparison to south-facing slopes. On both north- and south-facing slopes, annuals had the highest species turnover rate, followed by herbaceous perennials and shrubs. In the first four post-fire years, annual species were the largest floristic group, but herbaceous perennials and shrubs were the major contributors to community biomass. Nitrogen-fixing species and exotics contributed significantly to early post-fire community structure. Although the general trends in post-fire succession are clear in terms of temporal changes in the relative proportions of different plant groups, environmental variation and the nature of plant life histories of component species, especially dominant species, could alter such trends significantly.

Ecological Research↗