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At least 595 records · Page 33Linked to original sources
USGS2006

Descriptions and biological notes on three unusual mantellid tadpoles (Amphibia: Anura: Mantellidae) from southeastern Madagascar

The morphologies of three unusual tadpoles from slow-flowing, sandy-bottomed, rain forest streams in southeastern Madagascar are described. The large oral apparatus of the tadpole of Boophis picturatus Glaw, Vences, Andreone, and Vallan, 2001 lacks all keratinized structures and has an elaborately-folded lower labium with five, radially oriented, flattopped ridges. The tadpole of Mantidactylus guttulatus (Boulenger, 1881) lacks all keratinized mouthparts and has three immense papillae where the upper jaw normally occurs. The tadpole of Mantidactylus lugubris (Dumeril, 1853) has an ornate oral apparatus involving greatly hypertrophied derivatives of jaw serrations and unique structures on the lower labium that resemble labial teeth.

Proceedings of the Biological Society of Washingto↗
USGS1993

Thermal stratification of dilute lakes - evaluation of regulatory processes and biological effects before and after base addition: effects on brook trout habitat and growth

Addresses the significance of changes in summer thermal stratification patterns of Adirondack lakes affected by acidification to cold-water fish populations inhabiting these sensitive lakes . Brook trout Salvelinus fontinalis is the primary cold-water fish species indigenous to acid-sensitive lakes in the Adirondack region of N New York State; the ability of these lakes to sustain this important sport species is highly dependent on the availability of adequate summer habitat, consisting of cool, well-oxygenated water. Brook trout populations presently most susceptible to negative effects from acidification-induced increases in transparency and consequent reductions in preferred thermal habitat occur primarily in shallow, low-color lakes that are marginally acidified and either weakly stratified or strongly stratified with anoxic hypolimnia. Significant improvements in brook trout thermal habitat could be achieved in these lakes by reducing acidity levels, eg by liming.

New York↗
USGS2020

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2019

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Fish Community Goals and Objectives for Lake Erie (Ryan et al. 2003). This report is responsive to U.S. Geological Survey (USGS) obligations via Memorandum of Understanding (MOU) with the Great Lakes Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies in 2019 were to monitor long-term changes in the fish community and population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations of this agreement were sustained investigations of native percids, forage (prey) fish populations, and Lake Trout. Our 2019 deepwater program operations began in April and concluded in December, and utilized trawl, gillnet, hydroacoustic, lower trophic sampling, and telemetry methods. This work resulted in 88 bottom trawls covering 65 ha of lake-bottom and catching 24,140 fish totaling 3,622 kg during three separate trawl surveys in the West and Central basins of Lake Erie. Overnight gillnet sets (n=44) for cold water species were performed at 42 unique locations in the West and East basins of Lake Erie. A total of 8.0 km of gillnet was deployed during these surveys, which caught 286 fish, 114 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. USGS hydroacoustic surveys in 2019 produced 240 km of transects, and lower trophic sampling provided data from zooplankton samples (n=21) and water quality profiles (n=21) to populate a database maintained by the Ontario Ministry of Natural Resources and Forestry (OMNRF), Ohio Division of Natural Resources (ODNR), Michigan Division of Natural Resources (MDNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of the Great Lakes Acoustic Telemetry Observation System (GLATOS) throughout all three Lake Erie sub-basins, supporting multiple coordinated telemetry investigations. In 2019, Lake Trout investigations included annual gill net surveys and acoustic telemetry of spawning migration and habitat use in coordination with OMNRF, NYSDEC, and PFBC. Results from Lake Trout investigations were reported in the Coldwater Task Group annual report to the Great Lakes Fishery Commission (GLFC) and the CLC (Coldwater Task Group 2020). Likewise, interagency forage fish assessments conducted with hydroacoustics were summarized and reported in the Forage Task Group annual report (Forage Task Group 2020). This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2019 during June and September. The survey design provided temporal and spatial coverage that did not exist in the historic interagency trawl database, and thus complemented the August ODNR-OMNRF effort to reinforce stock assessments with more robust data. Analyses herein evaluated trends in: total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity and community structure. Data from this effort can be explored interactively online (https://lebs.shinyapps.io/western-basin/), and are accessible for download (https://doi.org/10.5066/P9LL6YOR, Keretz et al. 2020). Annual survey data are added to these sources as the data become available.

Lake Erie↗
USGS2021

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2020

This report presents biomass-based summaries of fish communities in the West Basin of Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2020 during June and September. The survey design provided temporal and spatial coverage that did not exist in the interagency trawl database, and thus complemented the August ODNR-OMNRF effort to reinforce stock assessments with more robust data. Analyses herein evaluated trends in: total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity and community structure. Data from this effort can be explored interactively online (https://lebs.shinyapps.io/western-basin/), and are accessible for download (https://www.sciencebase.gov/catalog/item/6013031fd34e162231fed756, Keretz et al. 2021). Annual survey data are added to these sources as the data become available.

Lake Erie↗
USGS2026

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2025

Lake Erie has the most populated watershed of all the Great Lakes and has undergone dramatic anthropogenic changes. Since the 1800s, overexploitation of fish populations, habitat destruction, non-native species proliferation, industrial contamination, and changes in nutrient loading have impacted the fish community including declines in or extirpation of many native species (Regier et al. 1969, Hartman 1973; Leach & Nepszy 1976; Ludsin et al. 2001). Implementation of the Clean Water Act and Great Lakes Water Quality Agreement in the 1970s improved habitat conditions (Reutter 2019), which contributed to several strong percid year-classes (Vandergoot et al. 2019). These strong year-classes also benefited from more restrictive management practices that reduced harvest, ultimately rehabilitating Lake Erie percid stocks (Kayle et al. 2015, STC 2020). Historically, Lake Erie supported a cool water fish community dominated by percids and salmonids. Recently updated FCOs set forth a vision that “Lake Erie will consist of diverse fish communities that support ongoing societal benefits, including thriving commercial and recreational fisheries, improved fish habitat and desirable ecosystem performance, and reduced adverse impacts from invasive fish” (Francis et al. 2020). Today, mixed fisheries resulting from seasonally changing cool and warm water habitats have developed in Lake Erie, and the new FCOs reflect a desire to manage both predator and prey fish communities within them. Although Lake Erie management agencies have traditionally focused on numerical indices of a few economically important species, aquatic ecosystem models are typically evaluated in terms of entire fish community biomass. As a result, our understanding of fish community structure and ecosystem dynamics from biomass-based models has been limited to short-term investigations and proxy measurements (e.g., length-weight conversion; FTG 2020). Therefore, many Lake Erie fish community databases are now incorporating biomass-based measurements. In response, USGS revised the Lake Erie trawl program to provide biomass-based measurements for all encountered species (Table 1). The survey design change occurred in 2012, coincident with commissioning of a new research vessel and a change in bottom trawl gear. These modifications already altered the existing time series; therefore, the survey design was also expanded to include greater spatial coverage and increased sample size generating a new time series. The purpose of this report is to develop a comprehensive understanding of the long-term changes and fish community dynamics including population dynamics of key fishes of interest to management agencies, such as native percids and their prey. Here, we summarize survey results for the most recent series of West Basin trawl data from 2013 through 2025. Note that a detailed description of the sampling process along with traditional numericallybased catch data (e.g., fish/ha) for individual species can be downloaded online (DuFour et al. 2026) or obtained for earlier years (https://doi.org/10.5066/F75M63X0; U.S. Geological Survey, Great Lakes Science Center 2019).

western Lake Erie↗
USGS2024

Effects of temporal hydrologic shifts on the population biology of an endangered freshwater fish in a dryland river ecosystem

Species occupying dryland river ecosystems often experience “boom-and-bust” demographic cycles that coincide with shifts in habitat availability. Knowing whether declines are within natural thresholds versus those caused by acute human disturbance is critical for managing protected species. We investigated temporal shifts in abundance and habitat use of an endangered population of the threespine stickleback Gasterosteus aculeatus in southern California, where a Mediterranean climate leads to ephemeral habitat in one of the regions' least hydrologically modified rivers, the Santa Clara River. We conducted population surveys over a period of below-average rainfall in the upper watershed in Soledad Canyon, with predefined reaches surveyed multiple times per year to capture different hydrologic conditions. Abundances were stable across years but varied significantly depending on location, with some reaches remaining dry and others drying seasonally to varying degrees. Occupancy models showed that the presence of stable perennial reaches, drying regime, and other site-specific factors were important predictors of habitat use, and that certain reaches may be key to ensuring source-sink dynamics as flow dissipates over the dry season. Low occupancy in two sections was driven by different predominant mechanisms, one by diel cycles of evapotranspiration and the other by cattails ( Typha spp.), with both having greater effects during the hotter, drier parts of the year. As dryland river ecosystems are vulnerable to the effects of anthropogenic-induced climate change, this study demonstrates how temporal monitoring can delimit dry-state benchmarks for improving management interventions (i.e., translocation and habitat restoration) for protected species under conditions that are predicted to worsen in the coming years.

California↗
USGS2013

Eco-evolutionary responses of Bromus tectorum to climate change: implications for biological invasions

How plant populations, communities, and ecosystems respond to climate change is a critical focus in ecology today. The responses of introduced species may be especially rapid. Current models that incorporate temperature and precipitation suggest that future Bromus tectorum invasion risk is low for the Colorado Plateau. With a field warming experiment at two sites in southeastern Utah, we tested this prediction over 4 years, measuring B. tectorum phenology, biomass, and reproduction. In a complimentary greenhouse study, we assessed whether changes in field B. tectorum biomass and reproductive output influence offspring performance. We found that following a wet winter and early spring, the timing of spring growth initiation, flowering, and summer senescence all advanced in warmed plots at both field sites and the shift in phenology was progressively larger with greater warming. Earlier green-up and development was associated with increases in B. tectorum biomass and reproductive output, likely due early spring growth, when soil moisture was not limiting, and a lengthened growing season. Seeds collected from plants grown in warmed plots had higher biomass and germination rates and lower mortality than seeds from ambient plots. However, in the following two dry years, we observed no differences in phenology between warmed and ambient plots. In addition, warming had a generally negative effect on B. tectorum biomass and reproduction in dry years and this negative effect was significant in the plots that received the highest warming treatment. In contrast to models that predict negative responses of B. tectorum to warmer climate on the Colorado Plateau, the effects of warming were more nuanced, relied on background climate, and differed between the two field sites. Our results highlight the importance of considering the interacting effects of temperature, precipitation, and site-specific characteristics such as soil texture, on plant demography and have direct implications for B. tectorum invasion dynamics on the Colorado Plateau.

Utah↗
USGS2023

Quantifying uncertainty in coastal salinity regime for biological application using quantile regression

Salinity regimes in coastal ecosystems are highly dynamic and driven by complex geomorphic and hydrological processes. Estuarine biota are generally adapted to salinity fluctuation, but are vulnerable to salinity extremes. Characterizing coastal salinity regime for ecological studies therefore requires representing extremes of salinity ranges at time scales relevant to ecology (e.g., daily, monthly, and seasonally). Here, we propose a framework for modeling coastal salinity with these overall goals: (1) quantify uncertainty in salinity associated with important terrestrial and oceanographic drivers, (2) examine time scales of salinity response to river streamflow events, and (3) predict salinity continuously over space at key time scales. Salinity is modeled as quantile surfaces related to river discharge, tidal dynamics, wind, and spatial location, applied to Suwannee Sound estuary, FL, USA, where salinity has been monitored spatially since 1981. Each quantile level is regressed independently, and together they comprise a distribution of salinity uncertainty across space, with upper and lower quantiles describing salinity extremes. Effects of physical drivers on salinity are compared through four base models with various combinations of tide and wind variables, each including spatial coordinates and a single streamflow metric (in cubic meters per second). Multiple time scales of streamflow are considered by taking means across various periods, from 1 to 12 days, and at various lagged intervals prior to salinity sample, totaling 144 streamflow metrics. We found that the Suwannee coastal salinity regime is dynamic at multiple time scales and varies nonlinearly across space from the river effluence outward. Salinity increases nonlinearly with decreasing river flow rates below 200 m 3 /s, most prominently in the lower quantiles of salinity (τ = 0.05–0.25). Wind appears to have a stronger influence on salinity than astronomic tides for this estuary. The regression approach developed here can be applied to any coastal system that has sufficient spatial and temporal monitoring coverage to capture multiple flood and drought events. It is implemented with a simple R routine, and is less computationally-intensive than finite difference hydrodynamic modeling. The characterizations of salinity uncertainty developed in these analyses can be directly applied to future studies of fish and wildlife responses to changes in watershed management.

Florida↗
USGS2015

In Response: Biological arguments for selecting effect sizes in ecotoxicological testing—A governmental perspective

Criticisms of the uses of the no-observed-effect concentration (NOEC) and the lowest-observed-effect concentration (LOEC) and more generally the entire null hypothesis statistical testing scheme are hardly new or unique to the field of ecotoxicology [ 1-4 ]. Among the criticisms of NOECs and LOECs is that statistically similar LOECs (in terms of p value) can represent drastically different levels of effect. For instance, my colleagues and I found that a battery of chronic toxicity tests with different species and endpoints yielded LOECs with minimum detectable differences ranging from 3% to 48% reductions from controls [ 5 ].

Environmental Toxicology and Chemistry↗
USGS2001

Assessment of biological effects of chlorinated hydrocarbons in osprey chicks

Osprey ( Pandion haliaetus ) eggs were collected during 1995 and 1996 at seven sites along the Fraser and Columbia River systems of British Columbia, Canada, and Washington and Oregon, USA. Fifty-four eggs were placed into a laboratory incubator. Thirty-eight of the hatched chicks were sacrificed within 24 h. Hatching success did not differ among sites and therefore between treatment and reference areas. Residual yolk sacs of eggs collected downstream of the large bleached-kraft pulp mill at Castlegar contained greater mean concentrations of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD, 2,930 ng/kg lipid) compared with reference sites such as the Nechako River, an upper tributary of the Fraser system (33.7 ng/kg). Total polychlorinated biphenyls (PCBs) in yolk sacs were also higher at Castlegar and in samples from the Columbia River downstream of Portland, Oregon, compared with those from the Nechako River. Concentrations of measured chemicals, including TCDD toxic equivalents (TEQs), total PCBs, p , p ′-dichlorodiphenylethylene ( p , p ′-DDE), and other organochlorines were not different in eggs that failed to hatch compared with calculated whole-egg values for hatched eggs. There were significant biochemical responses; a hepatic cytochrome P4501A (CYP1A) cross-reactive protein was detected in all samples tested and correlated positively with ethoxyresorufin o -deethylase (EROD) activity and yolk sac concentrations of TEQs and total PCBs. Tissue concentrations of vitamin A compounds varied among sites and correlated positively with yolk sac concentrations of TEQs and PCBs. Morphological, histological, and other physiological parameters, including chick growth, edema, deformities, and hepatic and renal porphyrin concentrations, neither varied among sites nor showed concentration-related effects.

British Columbia, Oregon, Washington↗
USGS2016

Controls on distribution patterns of biological soil crusts at micro- to global scales

Biocrusts are heterogeneously distributed in space. The drivers of their distribution patterns vary depending on the spatial scale of observation. Globally, there are about 1337 cyanobacteria, algae, bryophyte, and lichen species reported as components of biocrusts. At the broadest biogeographical scales, the degree and age of isolation of land masses may dictate distribution of these species and the similarities of the floras of different continents. At intra-continental and smaller scales, climate strongly influences abundance and community composition of biocrusts. Within drylands, biocrusts become more abundant as precipitation increases. The seasonality of rainfall is about equally important, with regions receiving most precipitation as winter rain and snow exhibiting the highest abundance and greatest relative cover of bryophyte and lichens vs. cyanobacteria. Temperature gradients may dictate the dominant cyanobacterium present in the community. At eco-regional and smaller scales, edaphic gradients determined by either soil parent materials or geomorphology or both become particularly influential. Globally, the most significant soil properties influencing the eco-regional scale cover and richness of biocrusts in dryland environments are soil texture, pH, and soil CaCO3 content. Sandier soils tend to favour development of cyanobacterial biocrusts, whereas mosses and lichens tend to be more abundant on finer textured soils. The alkalinity and CaCO3 content of soils are associated with greater bioocrust abundance in some regions, and dictates the species composition in the bryophyte and lichen component. Globally, gypsiferous soils are often associated with distinct floras and high abdundances of biocrusts, especially lichens. At local to micro-scales, biocrusts often are better developed in habitats with lower radiation loads such as polar-oriented slopes, or shaded habitats. Also at small scales, vascular plant canopies buffer microclimate for biocrusts, but also exert negative influences such as burial by litter. While our knowledge of biocrust distribution has advanced rapidly, there are considerable geographic and taxonomic gaps in our knowledge and a pronounced lack of truly global studies.

Book chapter↗