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At least 595 records · Page 33Linked to original sources

USGS2020

Standardized guide to the examination and necropsy of the horseshoe crab using Limulus polyphemus as Limulidae prototype

The Atlantic, or American, horseshoe crab (L imulus polyphemus ) has existed largely unchanged for over 100 million years. Millions of individuals are commonly observed ashore in spring and summer months during spawning events along the entire North American coastline expanding from the East to the Gulf coasts of the United States and Mexico. Other species can be found in the Indian and Pacific Ocean. The massive deposit of eggs in nearshore sand provides a critical source of food for endangered migrating birds, especially the Red Knot ( Calidruis canutus rufa ) in the Delaware Bay. Horseshoe crabs are also an important component of the sea turtle diet. In addition to the ecological importance, horseshoe crabs are used commercially for bait in eel and conch fisheries and for biomedical purposes in the production of Limulus Amebocyte Lysate (LAL) to detect bacterial toxins in injectable drugs and implantable devices. Commercial demands have led to population declines in some regions. Fisheries are regulated by state and the current International Union for Conservation of Nature (IUCN) listing for L. polyphemus is vulnerable. A small number of individuals are housed in public aquaria for educational purposes. With growing interest in animal welfare, the health and stability of populations, and potential stressors that can contribute to decline , it is important to have clear and detailed descriptions of horseshoe crab anatomy and necropsy techniques. The purpose of this guide is to illustrate the normal anatomy and the step-by-step technique for dissection of horseshoe crabs. The contents are largely excerpts of the master’s thesis of artist, Katie (Bergdale) Roorda, which was based on photographs from C. Meteyer documenting the sequence and procedure used for necropsy dissection.

Cooperator Report↗

USGS2014

Hierarchical model analysis of the Atlantic Flyway Breeding Waterfowl Survey

We used log-linear hierarchical models to analyze data from the Atlantic Flyway Breeding Waterfowl Survey. The survey has been conducted by state biologists each year since 1989 in the northeastern United States from Virginia north to New Hampshire and Vermont. Although yearly population estimates from the survey are used by the United States Fish and Wildlife Service for estimating regional waterfowl population status for mallards (Anas platyrhynchos), black ducks (Anas rubripes), wood ducks (Aix sponsa), and Canada geese (Branta canadensis), they are not routinely adjusted to control for time of day effects and other survey design issues. The hierarchical model analysis permits estimation of year effects and population change while accommodating the repeated sampling of plots and controlling for time of day effects in counting. We compared population estimates from the current stratified random sample analysis to population estimates from hierarchical models with alternative model structures that describe year to year changes as random year effects, a trend with random year effects, or year effects modeled as 1-year differences. Patterns of population change from the hierarchical model results generally were similar to the patterns described by stratified random sample estimates, but significant visibility differences occurred between twilight to midday counts in all species. Controlling for the effects of time of day resulted in larger population estimates for all species in the hierarchical model analysis relative to the stratified random sample analysis. The hierarchical models also provided a convenient means of estimating population trend as derived statistics from the analysis. We detected significant declines in mallard and American black ducks and significant increases in wood ducks and Canada geese, a trend that had not been significant for 3 of these 4 species in the prior analysis. We recommend using hierarchical models for analysis of the Atlantic Flyway Breeding Waterfowl Survey.

Journal of Wildlife Management↗

USGS2022

Temporal variation in capture efficiency underrepresents spring out-migrating Bull Trout in a trap-and-haul program

Trap-and-haul programs can maintain connection among habitats for migratory salmonids in fragmented systems. To conserve diversity within and among life history strategies, downstream trap and transport of juvenile salmonids could ideally mimic the natural, underlying out-migration dynamics of the population. A two-way trap-and-haul program is implemented in the lower Clark Fork River, Montana, to conserve adfluvial Bull Trout Salvelinus confluentus. We used PIT technology to assess whether downstream trapping efforts are effectively capturing variation in the out-migration dynamics of juvenile Bull Trout in Graves Creek, a key spawning and rearing tributary in the system. We tagged 821 juvenile Bull Trout in Graves Creek and used these tagged Bull Trout in conjunction with stationary PIT antennas to monitor out-migration and evaluate efficiency of the downstream trapping program. Capture efficiency in Graves Creek varied substantially from autumn to spring, with 89–96% of autumn out-migrating Bull Trout captured and 5–10% of spring out-migrating Bull Trout captured. Overall, we found that Bull Trout transported during the autumn out-migration periods generally reflect the natural out-migration dynamics of the population; however, Bull Trout that out-migrate in the spring are currently underrepresented in the downstream transport program. By understanding the underlying out-migration dynamics of the Bull Trout population in Graves Creek, management of the downstream trapping efforts can focus on minimizing potential selection for or against out-migrants based on timing and age at out-migration. Minimizing selection will conserve variation within the adfluvial life history strategy and therefore maximize resilience of the adfluvial Bull Trout populations.

Idaho, Montana↗

USGS2017

Status of White Sturgeon (Acipenser transmontanus Richardson, 1863) throughout the species range, threats to survival, and prognosis for the future

White Sturgeon, Acipenser transmontanus (WS), are distributed throughout three major river basins on the West Coast of North America: the Sacramento-San Joaquin, Columbia, and Fraser River drainages. Considered the largest North American freshwater fish, some WS use estuarine habitat and make limited marine movements between river basins. Some populations are listed by the United States or Canada as threatened or endangered (upper Columbia River above Grand Coulee Dam; Kootenai River; lower, middle and, upper Fraser River and Nechako River), while others do not warrant federal listing at this time (Sacramento-San Joaquin Rivers; Columbia River below Grand Coulee Dam; Snake River). Threats that impact WS throughout the species’ range include fishing effects and habitat alteration and degradation. Several populations suffer from recruitment limitations or collapse due to high early life mortality associated with these threats. Efforts to preserve WS populations include annual monitoring, harvest restrictions, habitat restoration, and conservation aquaculture. This paper provides a review of current knowledge on WS life history, ecology, physiology, behavior, and genetics and presents the status of WS in each drainage. Ongoing management and conservation efforts and additional research needs are identified to address present and future risks to the species.

Journal of Applied Ichthyology↗

USGS2007

The National Streamflow Statistics Program: A Computer Program for Estimating Streamflow Statistics for Ungaged Sites

The National Streamflow Statistics (NSS) Program is a computer program that should be useful to engineers, hydrologists, and others for planning, management, and design applications. NSS compiles all current U.S. Geological Survey (USGS) regional regression equations for estimating streamflow statistics at ungaged sites in an easy-to-use interface that operates on computers with Microsoft Windows operating systems. NSS expands on the functionality of the USGS National Flood Frequency Program, and replaces it. The regression equations included in NSS are used to transfer streamflow statistics from gaged to ungaged sites through the use of watershed and climatic characteristics as explanatory or predictor variables. Generally, the equations were developed on a statewide or metropolitan-area basis as part of cooperative study programs. Equations are available for estimating rural and urban flood-frequency statistics, such as the 1 00-year flood, for every state, for Puerto Rico, and for the island of Tutuila, American Samoa. Equations are available for estimating other statistics, such as the mean annual flow, monthly mean flows, flow-duration percentiles, and low-flow frequencies (such as the 7-day, 0-year low flow) for less than half of the states. All equations available for estimating streamflow statistics other than flood-frequency statistics assume rural (non-regulated, non-urbanized) conditions. The NSS output provides indicators of the accuracy of the estimated streamflow statistics. The indicators may include any combination of the standard error of estimate, the standard error of prediction, the equivalent years of record, or 90 percent prediction intervals, depending on what was provided by the authors of the equations. The program includes several other features that can be used only for flood-frequency estimation. These include the ability to generate flood-frequency plots, and plots of typical flood hydrographs for selected recurrence intervals, estimates of the probable maximum flood, extrapolation of the 500-year flood when an equation for estimating it is not available, and weighting techniques to improve flood-frequency estimates for gaging stations and ungaged sites on gaged streams. This report describes the regionalization techniques used to develop the equations in NSS and provides guidance on the applicability and limitations of the techniques. The report also includes a users manual and a summary of equations available for estimating basin lagtime, which is needed by the program to generate flood hydrographs. The NSS software and accompanying database, and the documentation for the regression equations included in NSS, are available on the Web at http://water.usgs.gov/software/.

Techniques and Methods↗

USGS2012

Response of the North American monsoon to regional changes in ocean surface temperature

The North American monsoon (NAM), an onshore wind shift occurring between July and September, has evolved in character during the Holocene largely due to changes in Northern Hemisphere insolation. Published paleoproxy and modeling studies suggest that prior to ∼8000 cal years BP, the NAM affected a broader region than today, extending westward into the Mojave Desert of California. Holocene proxy SST records from the Gulf of California (GoC) and the adjacent Pacific provide constraints for this changing NAM climatology. Prior to ∼8000 cal years BP, lower GoC SSTs would not have fueled northward surges of tropical moisture up the GoC, which presently contribute most of the monsoon precipitation to the western NAM region. During the early Holocene, the North Pacific High was further north and SSTs in the California Current off Baja California were warmer, allowing monsoonal moisture flow from the subtropical Pacific to take a more direct, northwesterly trajectory into an expanded area of the southwestern U.S. west of 114°W. A new upwelling record off southwest Baja California reveals that enhanced upwelling in the California Current beginning at ∼7500 cal year BP may have triggered a change in NAM climatology, focusing the geographic expression of NAM in the southwest USA into its modern core region east of ∼114°W, in Arizona and New Mexico. Holocene proxy precipitation records from the southwestern U.S. and northwestern Mexico, including lakes, vegetation/pollen, and caves are reviewed and found to be largely supportive of this hypothesis of changing Holocene NAM climatology.

Arizona;Colorado;New Mexico;Texas;Utah↗

USGS2016

Quasi-extinction risk and population targets for the Eastern, migratory population of monarch butterflies ( Danaus plexippus )

The Eastern, migratory population of monarch butterflies ( Danaus plexippus) , an iconic North American insect, has declined by ~80% over the last decade. The monarch’s multi-generational migration between overwintering grounds in central Mexico and the summer breeding grounds in the northern U.S. and southern Canada is celebrated in all three countries and creates shared management responsibilities across North America. Here we present a novel Bayesian multivariate auto-regressive state-space model to assess quasi-extinction risk and aid in the establishment of a target population size for monarch conservation planning. We find that, given a range of plausible quasi-extinction thresholds, the population has a substantial probability of quasi-extinction, from 11–57% over 20 years, although uncertainty in these estimates is large. Exceptionally high population stochasticity, declining numbers, and a small current population size act in concert to drive this risk. An approximately 5-fold increase of the monarch population size (relative to the winter of 2014–15) is necessary to halve the current risk of quasi-extinction across all thresholds considered. Conserving the monarch migration thus requires active management to reverse population declines, and the establishment of an ambitious target population size goal to buffer against future environmentally driven variability.

Scientific Reports↗

USGS2014

Effect of current drought upon water supplies in Cedar City Valley, Utah

The ground water in the pumping district in Cedar City Valley, Utah is considered by the Utah State Engineer to be fully appropriated, and he has not authorized drilling of irrigation wells there since 1942 except as replacements for wells having established rights. In spite of this regulation, the water levels in representative wells in 1954 were the lowest of record, and four to ten feet lower than the minima recorded during the drought of the 1930's. This recession is attributed in large part to the current drought in the southwestern United States. In the five years ended October 1, 1954, precipitation at Cedar City was markedly less than in any other five‐year period in the past 50 years, and stream runoff was likewise far below average. Ground‐water withdrawal has exceeded replenishment in these drought years, but it cannot yet be concluded that the ground‐water resources are overdeveloped in the sense that pumpage exceeds the long‐term average replenishment to the reservoir.

Utah↗

USGS2004

Dispersal scaling from the world's rivers

Although rivers provide important biogeochemical inputs to oceans, there are currently no descriptive or predictive relationships of the spatial scales of these river influences. Our combined satellite, laboratory, field and modeling results show that the coastal dispersal areas of small, mountainous rivers exhibit remarkable self-similar scaling relationships over many orders of magnitude. River plume areas scale with source drainage area to a power significantly less than one (average = 0.65), and this power relationship decreases significantly with distance offshore of the river mouth. Observations of plumes from large rivers reveal that this scaling continues over six orders of magnitude of river drainage basin areas. This suggests that the cumulative area of coastal influence for many of the smallest rivers of the world is greater than that of single rivers of equal watershed size. Copyright 2004 by the American Geophysical Union.

Geophysical Research Letters↗

USGS2021

Laboratory maintenance and culture of Pseudogymnoascus destructans, the fungus that causes bat white-nose syndrome

Pseudogymnoascus destructans is a fungal pathogen that causes white‐nose syndrome, an emerging and fatal disease of North American bats that has led to unprecedented population declines. As a psychrophile, P. destructans is adapted to infect bats during winter hibernation, when host metabolic activity and core body temperature are greatly reduced. The ability to maintain and cultivate isolates of P. destructans in the laboratory is necessary for conducting research with this fungus. This article describes protocols for culturing P. destructans from bat wing skin and soil, for cryopreserving the fungus, and for preparing liquid suspensions for laboratory experimentation.

Current Protocols↗

USGS2021

Genetic structure of Maryland Brook Trout populations: Management implications for a threatened species

Brook Trout Salvelinus fontinalis have declined across their native range due to multiple anthropogenic factors, including landscape alteration and climate change. Although coldwater streams in Maryland (eastern United States) historically supported significant Brook Trout populations, only fragmented remnant populations remain, with the exception of the upper Savage River watershed in western Maryland. Using microsatellite data from 38 collections, we defined genetic relationships of Brook Trout populations in Maryland drainages. Microsatellite analyses of Brook Trout indicated the presence of five major discrete units defined as the Youghiogheny (Ohio), Susquehanna, Patapsco/Gunpowder, Catoctin, and Upper Potomac, with a distinct genetic subunit present in the Savage River (upper Potomac). We did not observe evidence for widespread hatchery introgression with native Brook Trout. However, genetic effects due to fragmentation were evident in several Maryland Brook Trout populations, resulting in erosion of diversity that may have negative implications for their future persistence. Our current study supplements an increasing body of evidence that Brook Trout populations in Maryland are highly susceptible to multiple anthropogenic stresses, and many populations may be extirpated in the near future. Future management efforts focused on habitat protection and potential stream restoration, coupled with a comprehensive assessment framework that includes genetic considerations, may provide the best outlook for Brook Trout populations in Maryland.

Maryland↗

USGS2008

Rivers and streams: Physical setting and adapted biota

Streams and rivers are enormously important, with their ecological, and economic value, greatly outweighing their significance on the landscape. Lotic ecology began in Europe with a focus on the distribution, abundance, and taxonomic composition of aquatic organisms and in North American with a focus on fishery biology. Since 1980, stream/river research has been highly interdisciplinary, involving fishery biologists, aquatic entomologists, algologists, hydrologists, geomorphologists, microbiologists, and terrestrial plant ecologists. Stream and river biota evolved in response to, and in concert with, the physical and chemical setting. Streams/rivers transport water and move sediments to the sea as part of the hydrologic cycle that involves evaporation, plant evapotranspiration, and precipitation. Ephemeral streams flow only in the wettest year, intermittent streams flow predictably every year during capture of surface runoff, and perennial streams flow continuously during wet and dry periods, receiving both stormflow and groundwater baseflow. The lotic biota, for example, algae, macrophytes, benthic invertebrates, and fishes, have evolved adaptations to their running-water setting. Dominant physical features of this setting are current, substrate, and temperature. Key chemical constituents are dissolved gases, dissolved inorganic ions and compounds, particulate inorganic material, particulate organic material, and dissolved organic ions (nitrogen and phosphorus) and compounds.

Book chapter↗

USGS2005

Strange bedfellows - A deep-water hermatypic coral reef superimposed on a drowned barrier island; Southern Pulley Ridge, SW Florida platform margin

The southeastern component of a subtle ridge feature extending over 200 km along the western ramped margin of the south Florida platform, known as Pulley Ridge, is composed largely of a non-reefal, coastal marine deposit. Modern biostromal reef growth caps southern Pulley Ridge (SPR), making it the deepest hermatypic reef known in American waters. Subsurface ridge strata are layered, lithified, and display a barrier island geomorphology. The deep-water reef community is dominated by platy scleractinian corals, leafy green algae, and coralline algae. Up to 60% live coral cover is observed in 60-75 m of water, although only 1-2% of surface light is available to the reef community. Vertical reef accumulation is thin and did not accompany initial ridge submergence during the most recent sea-level rise. The delayed onset of reef growth likely resulted from several factors influencing Gulf waters during early stages of the last deglaciation (???14 kyr B.P.) including; cold, low-salinity waters derived from discrete meltwater pulses, high-frequency sea-level fluctuations, and the absence of modern oceanic circulation patterns. Currently, reef growth is supported by the Loop Current, the prevailing western boundary current that impinges upon the southwest Florida platform, providing warm, clear, low-nutrient waters to SPR. The rare discovery of a preserved non-reefal lowstand shoreline capped by rich hermatypic deep-reef growth on a tectonically stable continental shelf is significant for both accurate identification of late Quaternary sea-level position and in better constraining controls on the depth limits of hermatypic reefs and their capacity for adaptation to extremely low light levels. ?? 2004 Elsevier B.V. All rights reserved.

Florida↗

USGS2006

Seismic imaging of deep low-velocity zone beneath the Dead Sea basin and transform fault: Implications for strain localization and crustal rigidity

New seismic observations from the Dead Sea basin (DSB), a large pull-apart basin along the Dead Sea transform (DST) plate boundary, show a low velocity zone extending to a depth of 18 km under the basin. The lower crust and Moho are not perturbed. These observations are incompatible with the current view of mid-crustal strength at low temperatures and with support of the basin's negative load by a rigid elastic plate. Strain softening in the middle crust is invoked to explain the isostatic compensation and the rapid subsidence of the basin during the Pleistocene. Whether the deformation is influenced by the presence of fluids and by a long history of seismic activity on the DST, and what the exact softening mechanism is, remain open questions. The uplift surrounding the DST also appears to be an upper crustal phenomenon but its relationship to a mid-crustal strength minimum is less clear. The shear deformation associated with the transform plate boundary motion appears, on the other hand, to cut throughout the entire crust. Copyright 2006 by the American Geophysical Union.

Dead Sea Basin↗

USGS2016

Population characteristics and the suppression of nonnative Burbot

Burbot Lota lota were illegally introduced into the Green River, Wyoming, drainage and have since proliferated throughout the system. Burbot in the Green River pose a threat to native species and to socially, economically, and ecologically important recreational fisheries. Therefore, managers of the Green River are interested in implementing a suppression program for Burbot. We collected demographic data on Burbot in the Green River (summer and autumn 2013) and used the information to construct an age-based population model (female-based Leslie matrix) to simulate the population-level response of Burbot to the selective removal of different age-classes. Burbot in the Green River grew faster, matured at relatively young ages, and were highly fecund compared with other Burbot populations within the species’ native distribution. The age-structured population model, in conjunction with demographic information, indicated that the Burbot population in the Green River could be expected to increase under current conditions. The model also indicated that the Burbot population in the Green River would decline once total annual mortality reached 58%. The population growth of Burbot in the Green River was most sensitive to age-0 and age-1 mortality. The age-structured population model indicated that an increase in mortality, particularly for younger age-classes, would result in the effective suppression of the Burbot population in the Green River.

North American Journal of Fisheries Management↗

USGS1981

Annual and semiannual variations of the geomagnetic field at equatorial locations

For a year of quiet solar-activity level, geomagnetic records from American hemisphere observatories located between about 0?? and 30?? north geomagnetic latitude were used to compare the annual and semiannual variations of the geomagnetic field associated with three separate contributions: (a) the quiet-day midnight level, MDT; (b) the solar-quiet daily variation, Sq; (c) the quiet-time lunar semidiurnal tidal variation, L(12). Four Fourier spectral constituents (24, 12, 8, 6 h periods) of Sq were individually treated. All three orthogonal elements (H, D and Z) were included in the study. The MDT changes show a dominant semiannual variation having a range of about 7 gammas in H and a dominant annual variation in Z having a range of over 8 gammas. These changes seem to be a seasonal response to the nightside distortions by magnetospheric currents. There is a slow decrease in MDT amplitudes with increasing latitude. The Sq changes follow the patterns expected from an equatorial ionospheric dynamo electrojet current system. The dominant seasonal variations occur in H having a range of over 21 gammas for the 24 h period and over 12 gammas for the 12 h period spectral components. The higher-order components are relatively smaller in size. The Sq(H) amplitudes decrease rapidly with increasing latitude. Magnetospheric contributions to the equatorial Sq must be less than a few per cent of the observed magnitude. The L(12) variation shows the ionospheric electrojet features by the dominance of H and the rapid decrease in amplitude with latitude away from the equator. However, the seasonal variation range of over 7 gammas has a maximum in early February and minimum in late June that is not presently explainable by the known ionospheric conductivity and tidal behavior. ?? 1981.

Journal of Atmospheric and Terrestrial Physics↗

USGS2000

Sources of variation in survival and recovery rates of American Woodcock

All bandings and recoveries of American woodcock (Scolopax minor) since the last similar investigation of survival and recovery rates were examined for this study. The previous parameter estimates from the Eastern Region were augmented with 4 years of bandings. Banding effort in the Central Region was sufficient to conduct analyses for the 5 years after the previous analyses. Females generally had higher survival rates than males but recovery rates were not different. Adults had higher survival rates and lower recovery rates than young. Recovery rates, but not survival rates, were variable over time. Survival rates of woodcock from the Eastern Region were lower and recovery rates were higher compared to the Central Region. The calculated rate of population increase (h) for the Eastern Region (0.89) indicates that survival rates will need to be increased before the current population decline can be reversed. Poor data sets hampered our ability to draw strong conclusions.

Book chapter↗

USGS2003

Conservation genetics of North American freshwater mussels Amblema and Megalonaias

Freshwater bivalves are among the most endangered groups of organisms in North America. Efforts to protect the declining mussel fauna are confounded by ambiguities associated with recognition of distinct evolutionary entities or species. This, in part, is due to the paucity of reliable morphological characters for differentiating taxa. We have employed allozymes and DNA sequence data to search for diagnosably distinct evolutionary entities within two problematic genera of unionid mussels, Amblema and Megalonaias. Within the genus Amblema three species are recognized based on our DNA sequence data for the mitochondrial 16S rRNA and allozyme data (Amblema neislerii, A. plicata, and A. elliotti). Only one taxonomically distinct entity is recognized within the genus Megalonaias—M. nervosa. Megalonaias boykiniana of the Apalachicolan Region is not diagnosable and does not warrant specific taxonomic status. Interestingly, Megalonaias from west of the Mississippi River, including the Mississippi, exhibited an allozyme and mtDNA haplotype frequency shift suggestive of an east-west dichotomy. The results of this study eliminate one subspecies of Amblema and increase the range of A. plicata. This should not affect the conservation status of “currently stable” assigned to A. plicata by Williams et al. (1993). The conservation status of A. elliotti needs to be reexamined because its distribution appears to be limited to the Coosa River System in Alabama and Georgia.

Conservation Biology↗