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USGS2015

Modeling the complex impacts of timber harvests to find optimal management regimes for Amazon tidal floodplain forests

At the Amazon estuary, the oldest logging frontier in the Amazon, no studies have comprehensively explored the potential long-term population and yield consequences of multiple timber harvests over time. Matrix population modeling is one way to simulate long-term impacts of tree harvests, but this approach has often ignored common impacts of tree harvests including incidental damage, changes in post-harvest demography, shifts in the distribution of merchantable trees, and shifts in stand composition. We designed a matrix-based forest management model that incorporates these harvest-related impacts so resulting simulations reflect forest stand dynamics under repeated timber harvests as well as the realities of local smallholder timber management systems. Using a wide range of values for management criteria (e.g., length of cutting cycle, minimum cut diameter), we projected the long-term population dynamics and yields of hundreds of timber management regimes in the Amazon estuary, where small-scale, unmechanized logging is an important economic activity. These results were then compared to find optimal stand-level and species-specific sustainable timber management (STM) regimes using a set of timber yield and population growth indicators. Prospects for STM in Amazonian tidal floodplain forests are better than for many other tropical forests. However, generally high stock recovery rates between harvests are due to the comparatively high projected mean annualized yields from fast-growing species that effectively counterbalance the projected yield declines from other species. For Amazonian tidal floodplain forests, national management guidelines provide neither the highest yields nor the highest sustained population growth for species under management. Our research shows that management guidelines specific to a region’s ecological settings can be further refined to consider differences in species demographic responses to repeated harvests. In principle, such fine-tuned management guidelines could make management more attractive, thus bridging the currently prevalent gap between tropical timber management practice and regulation.

Amazon River, Mazagão watershed↗

USGS2017

Land use history and population dynamics of free-standing figs in a maturing forest

Figs ( Ficus sp.) are often considered as keystone resources which strongly influence tropical forest ecosystems. We used long-term tree-census data to track the population dynamics of two abundant free-standing fig species, Ficus insipida and F . yoponensis , on Barro Colorado Island (BCI), a 15.6-km 2 island in Lake Gatún, Panama. Vegetation cover on BCI consists of a mosaic of old growth (>400 years) and maturing (about 90–150 year old) secondary rainforest. Locations and conditions of fig trees have been mapped and monitored on BCI for more than 35 years (1973–2011), with a focus on the Lutz Catchment area (25 ha). The original distribution of the fig trees shortly after the construction of the Panama Canal was derived from an aerial photograph from 1927 and was compared with previous land use and forest status. The distribution of both fig species (~850 trees) is restricted to secondary forest. Of the original 119 trees observed in Lutz Catchment in 1973, >70% of F . insipida and >90% of F . yoponensis had died by 2011. Observations in other areas on BCI support the trend of declining free-standing figs. We interpret the decline of these figs on BCI as a natural process within a maturing tropical lowland forest. Senescence of the fig trees appears to have been accelerated by severe droughts such as the strong El Niño event in the year 1982/83. Because figs form such an important food resource for frugivores, this shift in resource availability is likely to have cascading effects on frugivore populations.

PLoS ONE↗

USGS2017

Dynamic oceanography determines fine scale foraging behavior of Masked Boobies in the Gulf of Mexico

During breeding, foraging marine birds are under biological, geographic, and temporal constraints. These contraints require foraging birds to efficiently process environmental cues derived from physical habitat features that occur at nested spatial scales. Mesoscale oceanography in particular may change rapidly within and between breeding seasons, and findings from well-studied systems that relate oceanography to seabird foraging may transfer poorly to regions with substantially different oceanographic conditions. Our objective was to examine foraging behavior of a pan-tropical seabird, the Masked Booby ( Sula dactylatra ), in the understudied Caribbean province, a moderately productive region driven by highly dynamic currents and fronts. We tracked 135 individuals with GPS units during May 2013, November 2013, and December 2014 at a regionally important breeding colony in the southern Gulf of Mexico. We measured foraging behavior using characteristics of foraging trips and used area restricted search as a proxy for foraging events. Among individual attributes, nest stage contributed to differences in foraging behavior whereas sex did not. Birds searched for prey at nested hierarchical scales ranging from 200 m—35 km. Large-scale coastal and shelf-slope fronts shifted position between sampling periods and overlapped geographically with overall foraging locations. At small scales (at the prey patch level), the specific relationship between environmental variables and foraging behavior was highly variable among individuals but general patterns emerged. Sea surface height anomaly and velocity of water were the strongest predictors of area restricted search behavior in random forest models, a finding that is consistent with the characterization of the Gulf of Mexico as an energetic system strongly influenced by currents and eddies. Our data may be combined with tracking efforts in the Caribbean province and across tropical regions to advance understanding of seabird sensing of the environment and serve as a baseline for anthropogenic based threats such as development, pollution, and commercial fisheries.

Gulf of Mexico, Isla Muertos↗

USGS2020

High spatial fidelity among foraging trips of Masked Boobies from Pedro Cays, Jamaica

In marine environments, tropical and subtropical habitats are considered to be inherently less productive than more temperate systems. As such, foraging site fidelity among vertebrate predators occupying low-latitude marine systems is generally low as a response to an increased unpredictability of resources. We investigated the foraging movements of Masked Boobies breeding on Middle Cay, Jamaica using GPS loggers to examine if the presence of a nearby bathymetric feature influenced foraging site fidelity in a tropical system, the Caribbean Sea. According to the movements of tracked individuals, this population of boobies shows a high degree of spatial fidelity in foraging site selection, concentrated on the northern edge of Pedro Bank. We suggest this feature as an important location for marine conservation in the region and demonstrate its utility to foraging boobies via habitat modeling using a maximum entropy approach of relevant habitat variables. Finally, we place this study into the global context of Masked Booby foraging by examining the published literature of relevant tracking studies for population-level similarity in foraging metrics. According to hierarchical clustering of foraging effort, Masked Boobies demonstrate a density-dependent response to foraging effort regardless of colony origin or oceanic basin consistent with the principles of Ashmole’s Halo.

Middle Cay, Pedro Bank↗

USGS2014

A new species of small-eared shrew (Mammalia, Eulipotyphla, Cryptotis ) from the Lacandona rain forest, Mexico

The diversity and distribution of mammals in the American tropics remain incompletely known. We describe a new species of small-eared shrew (Soricidae, Cryptotis ) from the Lacandona rain forest, Chiapas, southern Mexico. The new species is distinguished from other species of Cryptotis on the basis of a unique combination of pelage coloration, size, dental, cranial, postcranial, and external characters, and genetic distances. It appears most closely related to species in the Cryptotis nigrescens species group, which occurs from southern Mexico to montane regions of Colombia. This discovery is particularly remarkable because the new species is from a low-elevation habitat (approximately 90 m), whereas most shrews in the region are restricted to higher elevations, typically > 1,000 m. The only known locality for the new shrew is in one of the last areas in southern Mexico where relatively undisturbed tropical vegetation is still found. The type locality is protected by the Mexican government as part of the Yaxchilán Archaeological Site on the border between Mexico and Guatemala.

Chiapas↗

USGS2010

Breeding biology and natural history of the Slate-throated Whitestart in Venezuela

We provide details on the breeding biology of the Slate-throated Whitestart (Myioborus miniatus) from 126 nests found during seven breeding seasons, 2002-2008, at Yacamb?? National Park, Venezuela. Nesting activity peaked in late April and May. Only the female built the nest and incubated the eggs. Males rarely visited the nest during these stages. Mean clutch size (2.1 ?? 0.04 eggs, n = 93) was the smallest recorded for the Slate-throated Whitestart. Incubation and nestling period lengths were 15.3 ?? 0.31 (n = 21) and 10.8 ?? 0.24 (n = 7) days, respectively. Attentiveness (% of time on the nest) during incubation (59 ?? 1.6%, n = 52) was similar to other tropical warblers and much lower than northern relatives. This caused a relatively low egg temperature (34.40 ?? 0.33u C, n = ?? nests, 20 days) compared with north temperate birds. Both parents fed nestlings and increased their provisioning rates with nestling age. Growth rate based on nestling mass (k = 0.521 ?? 0.015) was faster than for other tropical passerines but slower than northern relatives. Predation was the main cause of nesting failure and rate of predation increased with age of the nest. An estimated 15% of nests were successful based on an overall Mayfield daily predation rate of 0.053 ?? 0.007. This study confirms a strong latitudinal variation in life history traits of warblers. ?? 2010 by the Wilson Ornithological Society.

Wilson Journal of Ornithology↗

USGS2014

Breeding biology of the Spotted Barbtail ( Premnoplex brunnescens )

The Spotted Barbtail (Furnariidae) is poorly studied but shows some extreme traits for a tropical passerine. We located and monitored 155 nests to study this species for 7 years in an Andean cloud forest in Venezuela. Spotted Barbtails have an unusually long incubation period of 27.2 ± 0.16 days, as a result of very long (3–6 hr) off-bouts even though both adults incubate. The long off-bouts yield low incubation temperatures for embryos and are associated with proportionally large eggs (21% of adult mass). They also have a long nestling period of 21.67 ± 0.33 days, and a typical tropical brood size of two. The slow growth rate of the typical broods of two is even slower in broods artificially reduced to one young. Nonetheless, the young stay in the nest long enough to achieve wing lengths that approach adult size.

Wilson Journal of Ornithology↗

USGS2017

Breeding biology of an endemic Bornean turdid, the Fruithunter (Chlamydochaera jefferyi), and life history comparisons with Turdus species of the world

We present the first description of the breeding biology for the Fruithunter ( Chlamydochaera jefferyi ), a member of the cosmopolitan family Turdidae, and a montane endemic to the tropical Asian island of Borneo. We also compile breeding biology traits from the literature to make comparisons between the Fruithunter and the thrush genus Turdus . Our comparisons indicate that Fruithunters exhibit a slower life history strategy than both tropical and north temperate Turdus . We located and monitored 42 nests in 7 years in Kinabalu Park, Sabah, Malaysia. The mean clutch size was 1.89 ± 0.08 eggs, and the modal clutch size was 2 eggs. Mean fresh egg mass was 6.15 ± 0.13 g, representing 9.5% of adult female body mass. Average lengths of incubation and nestling periods were 14.56 ± 0.24 and 17.83 ± 0.31 days respectively. Only the female incubated and brooded the eggs and nestlings, but both the male and female fed nestlings. Female attentiveness during incubation was high throughout, reaching an asymptote around 85% with average on-bouts of 39.0 ± 2.5 mins. The daily nest survival probability was 0.951 ± 0.025, and the daily predation rate was 0.045 ± 0.024. Female feeding rate increased as brooding effort decreased, suggesting that female feeding rate may be constrained by the need to provide heat while nestlings are unable to thermoregulate. This contrasts with the feeding behavior of males, which showed much less of an increase across the nestling period. Furthermore, we describe a new vocalization which expands the vocal repertoire for Fruithunters, and we provide a brief audio clip and spectrogram.

Wilson Journal of Ornithology↗

USGS2006

The influence of disturbance events on survival and dispersal rates of Florida box turtles

Disturbances have the potential to cause long-term effects to ecosystem structure and function, and they may affect individual species in different ways. Long-lived vertebrates such as turtles may be at risk from such events, inasmuch as their life histories preclude rapid recovery should extensive mortality occur. We applied capture–mark–recapture models to assess disturbance effects on a population of Florida box turtles ( Terrapene carolina bauri ) on Egmont Key, Florida, USA. Near the midpoint of the study, a series of physical disturbances affected the island, from salt water overwash associated with several tropical storms to extensive removal of nonindigenous vegetation. These disturbances allowed us to examine demographic responses of the turtle population and to determine if they affected dispersal throughout the island. Adult survival rates did not vary significantly either between sexes or among years of the study. Survival rates did not vary significantly between juvenile and adult turtles, or among years of the study. Furthermore, neither adult nor juvenile survival rates differed significantly between pre- and post-disturbance. However, dispersal rates varied significantly among the four major study sites, and dispersal rates were higher during the pre-disturbance sampling periods compared to post-disturbance. Our results suggest few long-term effects on the demography of the turtle population. Florida box turtles responded to tropical storms and vegetation control by moving to favorable habitats minimally affected by the disturbances and remaining there. As long as turtles and perhaps other long-lived vertebrates can disperse to non-disturbed habitat, and high levels of mortality do not occur in a population, a long life span may allow them to wait out the impact of disturbance with potentially little effect on long-term population processes.

Ecological Applications↗

USGS2009

Potential effects of runoff, fluvial sediment, and nutrient discharges on the coral reefs of Puerto Rico

Coral reefs, the foundation and primary structure of many highly productive and diverse tropical marine ecosystems, have been degraded by human activity in much of the earth's tropical oceans. To contribute to improved understanding of this problem, the potential relation between river sediment and nutrient discharges and degradation of coral reefs surrounding Puerto Rico was studied using streamflow, suspended-sediment, and water-quality data. Mean annual runoff for the 8711 km2 island is 911 mm, about 57% of mean annual precipitation (1600 mm). Mean annual suspended-sediment discharge from Puerto Rico to coastal waters is estimated at 2.7-9.0 million metric tonnes. Storm runoff transports a substantial part of sediment: the highest recorded daily sediment discharge is 1-3.6 times the mean annual sediment discharge. Hurricane Georges (1998) distributed an average of 300 mm of rain across the island, equivalent to a volume of about 2.6 billion m3. Runoff of more than 1.0 billion m3 of water and as much as 5 to 10 million metric tonnes of sediment were discharged to the coast and shelf. Nitrogen and phosphorous concentrations in river waters are as much as 10 times the estimated presettlement levels. Fecal coliform and fecal streptococcus concentrations in many Puerto Rico rivers are near or above regulatory limits. Unlike sediment discharges, which are predominantly episodic and intense, river-borne nutrient and fecal discharge is a less-intense but chronic stressor to coral reefs found near the mouths of rivers. Negative effects of riverderived sediment and nutrient discharge on coral reefs are especially pronounced on the north, southwest, and west coasts.

Journal of Coastal Research↗

USGS1964

Nickeliferous laterites in southwestern Oregon and northwestern California

Deposits of ferruginous nickeliferous lateritic soils formed by weathering in place of ultramafic rocks occur at several places in northwestern California and southwestern Oregon, mostly in the Klamath Mountains province. Most of the deposits have been derived from relatively fresh peridotite, although at least one deposit was formed on serpentinite. The accumulations of lateritic soil are on flat-lying to gently sloping surfaces in a terrain that has been extensively dissected and deeply entrenched.The thickness of the deposits ranges from a few feet to more than 50 feet, and may vary widely in any given deposit, for the bedrock surface is commonly highly irregular. The deposit at Nickel Mountain, Oregon, is unique, because it is the only one in which the nickel silicate, garnierite, is plentiful. At Nickel Mountain, garnierite, accompanied by abundant microcrystalline quartz, occurs in veinlike bodies and boxworks that lie at the base of the soil zone and persist in depth along joints and fractures into the underlying slightly weathered or fresh peridotite.Mineralogical studies and chemical analyses show that weathering of the ultramafic rocks destroyed olivine and much of the orthopyroxene and serpentine minerals. Secondary minerals formed are predominantly hydrated ferric oxides (goethite); minor amounts of a montmorillonite mineral, chlorite, and talc were also identified. The kaolin group and bauxite minerals were not found. Except for garnierite at the Nickel Mountain deposit, no nickel-bearing mineral was identified. Nickel may occur, however, in montmorillonite, chlorite, and talc where it substitutes for Mg to a limited extent; in serpentine minerals that were not destroyed by weathering; and possibly in combination with ferric hydroxides. Cobalt may also occur in the clay minerals and probably is associated with trace amounts of manganese oxide or hydroxides.The lateritic soils in northwestern California and southwestern Oregon are similar to soils formed by lateritic weathering of ultramafic rocks in Cuba, the Philippines, New Caledonia, and other tropical regions of the world. They have, however, a higher content of SiO 2 and MgO, and a lower content of Fe 2 O 3 than deposits formed in tropical climates. The California and Oregon deposits are considerably smaller and lower in average metal content which, because they are widely scattered in a rugged, relatively isolated terrain, makes them unpromising as likely reserves for commercial exploitation in the foreseeable future.Most of the deposits are regarded as having been formed by chemical weathering in a climate having alternating wet and dry seasons, probably similar to that prevailing today. Their age is uncertain but may range from post-Miocene to Pleistocene.

California, Oregon↗

USGS1985

Near-infrared spectra of West Shasta gossans compared with true and false gossans from Australia and Saudi Arabia

The near-infrared spectra of a suite of outcrop samples of massive sulfide gossans and false gossans representing three different weathering environments were measured and studied with X-ray, scanning electron microscope, and energy dispersive X-ray. Gossans that formed in a humid tropical environment are represented by samples from the Mt. Isa area, Queensland, Australia, and gossans that formed in an arid environment are represented by samples from several locations in Saudi Arabia. The gossans of the West Shasta massive sulfide district in California represent a weathering environment intermediate between these two extremes.On the basis of these spectral measurements, true gossans after massive sulfide deposits have spectra in the 800 to 2,500 nanometer (nm) region that are distinctly different from the spectra of false gossans. In the humid tropical environment, highly leached, newly formed kaolin minerals in the gossan cause spectral differences at about 1,400 to 2,200 nm. In the arid environment, true gossans preserve talc and minor mica from the massive sulfide deposit; these minerals are not observed in false gossans. These minerals result in spectral differences in the 2,200- to 2,300-nm region. In addition, true gossans generally have goethite spectral bands at about 900 nm as opposed to hematite spectral bands at about 850 nm for the false gossans.False gossans are not known in the West Shasta district; however, the gossan at the largest deposit, Iron Mountain, is a true gossan that has the distinctive spectral features of goethite at about 900 nm and diaspore in the 1,400- to 2,500-nm region. The other gossans also have the spectral features of goethite, but they contain a less leached mixture of kaolinite plus illite and have distinctive spectral features in the 1,400- to 2,500-nm region. These spectral differences define two groups of West Shasta gossans--inner gossans in large deposits and outer gossans at the margins of large deposits and in lesser massive sulfide deposits.

Economic Geology↗

USGS2017

Part I, the development of the method

A freshly exposed surface of obsidian will take up water from the atmosphere to form a hydrated surface layer. This layer has a different density and refractive index than does the remainder of the obsidian. Using special techniques, a thin section of the obsidian cut at right angles to the surface can be prepared. When examined under the microscope the hydrated layer is visible and its thickness can be measured. Photomicrographs of such thin sections are shown. Factors that determine the rate of hydration were considered. Using artifacts from archaeological sites of known age, the influence of temperature, relative humidity, chemical composition of the obsidian, burning and erosion of the obsidian on the rates of hydration was determined. Temperature and chemical composition are the main factors controlling the rate of hydration. Obsidian hydrates more rapidly at a higher temperature, and thus progresses at a faster rate in tropical than in arctic climates. Rhyolitic obsidian hydrates more slowly than does trachytic obsidian. Using archaeological data from various parts of the world, several tentative hydration rates were determined for tropical, temperate, and arctic climates. The method in its present state of development is especially suited to determine relative chronologies in layered sequences of artifacts from a single site, or region. It is also useful for detecting fake artifacts. Future work to refine the method is suggested.

American Antiquity↗

USGS1983

Upper Cenozoic silicoflagellates from offshore Ecuador, Deep Sea Drilling Project Site 504

Diverse and abundant late Miocene to Pleistocene silicoflagellates at DSDP Site 504 can be correlated by tropical biostratigraphic zones and relative paleotemperature values to eastern tropical Pacific reference site DSDP 503A farther to the west. Early Pliocene assemblages, which were poorly known until now, are present and can be correlated locally between DSDP Holes 504, 503A, and 495, using species events associated with the new Dictyocha pulchella Subzone and Dictyocha angulata Subzone. Silicoflagellate relative paleotemperature values show major warming at 4.7 to 5.0 Ma (Cores 45-48), 3.4 to 3.8 Ma (Cores 32-33), 1.5 to 1.7 Ma (Cores 12-16), and 0.5 to 0.8 Ma (Cores 3-6). Major coolings occurred at 5.0 to 5.1 Ma (Core 51), 3.9 to 4.4 Ma (Cores 38-44), and 1.0 to 1.3 Ma (Cores 8-10). The appearance of Dictyocha longa is proposed to replace the asperoid/fibuloid ratio reversal as the bottom of the Dictyocha fibula Zone, because the non-evolutionary ratio reverses several times in the upper Miocene of Hole 5O3A, and at least once in Hole 504. Three new Pliocene silicoflagellates are defined: Dictyocha concinna Bukry, n. sp., D. helix Bukry, n. sp., and D. tamarae Bukry, n. sp.

Initial Reports of the D.S.D.P.↗

USGS2016

The influence of food abundance, food dispersion and habitat structure on territory selection and size of an Afrotropical terrestrial insectivore

Most tropical insectivorous birds, unlike their temperate counterparts, hold and defend a feeding and breeding territory year-around. However, our understanding of ecological factors influencing territory selection and size in tropical insectivores is limited. Here we examine three prominent hypotheses relating food abundance, food dispersion (spatial arrangement of food items), and habitat structure to territoriality in the Usambara Thrush Turdus roehli . We first compared leaf-litter macro-invertebrate abundance and dispersion, and habitat structure between territories and random sites. We then examined the relation between these same ecological factors and territory size. Invertebrate abundance and dispersion were sparsely and evenly distributed across our study system and did not vary between territories and random sites. In contrast, habitat structure did vary between territories and random sites indicating the Usambara Thrush selects territories with open understorey and closed overstorey habitat. Invertebrate abundance and dispersion within territories of the Usambara Thrush were not associated with habitat structure. We believe the most likely explanation for the Usambara Thrush’s preference for open understorey and closed overstorey habitat relates to foraging behavior. Using information-theoretic model selection we found that invertebrate abundance was the highest-ranked predictor of territory size and was inversely related, consistent with food value theory of territoriality.

Ostrich↗

USGS1994

Effects of major storms on Pacific Islands

Tropical storms of various kinds are as much a depositional event as an erosional event. Much attention is given to the destructive aspects of major storms because of the loss of life and property, but little is known about their beneficial effects to coastal accretion. While we can usually measure and map the instantaneous effects of a tropical storm, we can only speculate about the long-term effects. Geologic mapping by the U.S. Geological Survey in areas prone to storm effects can give us opportunities to minimize losses by identifying locations most likely to suffer.

Fact Sheet↗

USGS2004

Nutrient controls on biocomplexity of mangrove ecosystems

Mangrove forests are important coastal ecosystems that provide a variety of ecological and societal services. These intertidal, tree-dominated communities along tropical coastlines are often described as “simple systems,” compared to other tropical forests with larger numbers of plant species and multiple understory strata; however, mangrove ecosystems have complex trophic structures, and organisms exhibit unique physiological, morphological, and behavioral adaptations to environmental conditions characteristic of the land-sea interface. Biogeochemical functioning of mangrove forests is also controlled by interactions among the microbial, plant, and animal communities and feedback linkages mediated by hydrology and other forcing functions. Scientists with the U.S. Geological Survey (USGS) at the National Wetlands Research Center are working to understand more fully the impact of nutrient variability on these delicate and important ecosystems.

Fact Sheet↗

USGS2022

Louisiana and Landsat

Louisiana holds a unique historical, economic, and cultural position in the national consciousness. Its off-shore oil operations help fuel the U.S. economy. The Port of South Louisiana is the busiest in the United States by cargo volume; the nearby Port of New Orleans is the sixth busiest. The former French and Spanish colony served as a key connection to the Caribbean long before U.S. independence, and Louisiana’s multinational effects soon melded into a Creole culture that had an outsized effect on America. That heritage remains a powerful draw for the tourism industry in Louisiana. Gulf Coast breezes carry the aromas of tropical flowers, sweet beignets, and savory crawfish through the 13 colorful blocks of New Orleans’ French Quarter. Interwoven with the sounds of jazz, rock, country music, and zydeco, the city’s charms delight more than 18 million visitors each year. The proximity of the Gulf Coast and the city’s elevation, however—just 6.5 feet above sea level—also offer an ominous warning of the ever-present threat of climate change and natural disaster. Hurricane Katrina battered New Orleans in 2005, an incident tied to more than 1,800 deaths that marks one of the most notorious U.S. weather-related tragedies in the 21st century. Environmental changes have amplified threats from tropical storms. Through more frequent and powerful storms, sea level rise threatens low-lying areas such as Lake Charles and creates unpredictable weather patterns that threaten the cities and agricultural operations to the north. Landsat data offer rich information that can aid in early warning, disaster response, and the monitoring of recovery from natural disasters. Its historic, unparalleled 50-year archive of repeat Earth observations also serves to guide resiliency plans and feeds modeling that can help States like Louisiana prepare for coming coastal and inland change. Here are just a few examples of how Landsat has been used to study and understand Louisiana.

Louisiana↗