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CMGTooL user's manual

During the past several years, the sediment transport group in the Coastal and Marine Geology Program (CMGP) of the U. S. Geological Survey has made major revisions to its methodology of processing, analyzing, and maintaining the variety of oceanographic time-series data. First, CMGP completed the transition of the its oceanographic time-series database to a self-documenting NetCDF (Rew et al., 1997) data format. Second, CMGP’s oceanographic data variety and complexity have been greatly expanded from traditional 2-dimensional, single-point time-series measurements (e.g., Electro-magnetic current meters, transmissometers) to more advanced 3-dimensional and profiling time-series measurements due to many new acquisitions of modern instruments such as Acoustic Doppler Current Profiler (RDI, 1996), Acoustic Doppler Velocitimeter, Pulse-Coherence Acoustic Doppler Profiler (SonTek, 2001), Acoustic Bacscatter Sensor (Aquatec, 1001001001001001001). In order to accommodate the NetCDF format of data from the new instruments, a software package of processing, analyzing, and visualizing time-series oceanographic data was developed. It is named CMGTooL. The CMGTooL package contains two basic components: a user-friendly GUI for NetCDF file analysis, processing and manipulation; and a data analyzing program library. Most of the routines in the library are stand-alone programs suitable for batch processing. CMGTooL is written in MATLAB computing language (The Mathworks, 1997), therefore users must have MATLAB installed on their computer in order to use this software package. In addition, MATLAB’s Signal Processing Toolbox is also required by some CMGTooL’s routines. Like most MATLAB programs, all CMGTooL codes are compatible with different computing platforms including PC, MAC, and UNIX machines (Note: CMGTooL has been tested on different platforms that run MATLAB 5.2 (Release 10) or lower versions. Some of the commands related to MAC may not be compatible with later releases of MATLAB). The GUI and some of the library routines call low-level NetCDF file I/O, variable and attribute functions. These NetCDF exclusive functions are supported by a MATLAB toolbox named NetCDF, created by Dr. Charles Denham . This toolbox has to be installed in order to use the CMGTooL GUI. The CMGTooL GUI calls several routines that were initially developed by others. The authors would like to acknowledge the following scientists for their ideas and codes: Dr. Rich Signell (USGS), Dr. Chris Sherwood (USGS), and Dr. Bob Beardsley (WHOI). Many special terms that carry special meanings in either MATLAB or the NetCDF Toolbox are used in this manual. Users are encouraged to read the documents of MATLAB and NetCDF for references.

Open-File Report

Crystalline Silica Primer

Crystalline silica is the scientific name for a group of minerals composed of silicon and oxygen. The term crystalline refers to the fact that the oxygen and silicon atoms are arranged in a threedimensional repeating pattern. This group of minerals has shaped human history since the beginning of civilization. From the sand used for making glass to the piezoelectric quartz crystals used in advanced communication systems, crystalline silica has been a part of our technological development. Crystalline silica's pervasiveness in our technology is matched only by its abundance in nature. It's found in samples from every geologic era and from every location around the globe. Scientists have known for decades that prolonged and excessive exposure to crystalline silica dust in mining environments can cause silicosis, a noncancerous lung disease. During the 1980's, studies were conducted that suggested that crystalline silica also was a carcinogen. As a result of these findings, crystalline silica has been regulated under the Occupational Safety and Health Administration's (OSHA) Hazard Communication Standard (HCS). Under HCS, OSHAregulated businesses that use materials containing 0.1% or more crystalline silica must follow Federal guidelines concerning hazard communication and worker training. Although the HCS does not require that samples be analyzed for crystalline silica, mineral suppliers or OSHAregulated businesses may choose to do so if they wish to show that they are exempt from the requirements of HCS. Because crystalline silica is an extremely common mineral and the HCS will affect many mineral commodities, it is important then, that there be as clear an understanding as possible of what is and what is not crystalline silica, and where it is found and used, and how it is qualitatively and quantitatively identified. This primer is an attempt to accomplish this in as nontechnical a manner as possible. This primer will examine crystalline silica. Part I will describe, in nonscientific terms, what crystalline silica is and how we come in contact with it. Part II will discuss the regulatory decisions that have created new interest in this ancient and widespread substance and will present a nontechnical overview of the techniques used to measure crystalline silica. Because this primer is meant to be a starting point for anyone interested in learning more about crystalline silica, a list of selected readings and other resources is included. The detailed glossary, which defines many terms that are beyond the scope of this publication, is designed to help the reader move from this presentation to a more technical one, the inevitable next step.

Special Publication

Capturing, preserving and digitizing legacy seismic data from the Montserrat Volcano Observatory analog seismic network, July 1995 – December 2004

An eruption of the Soufrière Hills Volcano (SHV) on the eastern Caribbean island of Montserrat began on 18 July 1995 and continued until February 2010. Within nine days of the eruption onset, an existing four‐station analog seismic network (ASN) was expanded to 10 sites. Telemetered data from this network were recorded, processed, and archived locally using a system developed by scientists from the U.S. Geological Survey (USGS) Volcano Disaster Assistance Program (VDAP). In October 1996, a digital seismic network (DSN) was deployed with the ability to capture larger amplitude signals across a broader frequency range. These two networks operated in parallel until December 2004, with separate telemetry and acquisition systems (analysis systems were merged in March 2001). Although the DSN provided better quality data for research, the ASN featured superior real‐time monitoring tools and captured valuable data including the only seismic data from the first 15 months of the eruption. These successes of the ASN have been rather overlooked. This article documents the evolution of the ASN, the VDAP system, the original data captured, and the recovery and conversion of more than 230,000 seismic events from legacy SUDS, Hypo71, and Seislog formats into Seisan database with waveform data in miniSEED format. No digital catalog existed for these events, but students at the University of South Florida have classified two-thirds of the 40,000 events that were captured between July 1995 and October 1996. Locations and magnitudes were recovered for ~10,000 of these events. Real-time seismic amplitude measurement, seismic spectral amplitude measurement, and tiltmeter data were also captured. The result is that the ASN seismic dataset is now more discoverable, accessible, and reusable, in accordance with FAIR data principles. These efforts could catalyze new research on the 1995–2010 SHV eruption. Furthermore, many observatories have data in these same legacy data formats and might benefit from procedures and codes documented here.

Soufrière Hills Volcano

Evolution of the 2015 Cotopaxi eruption revealed by combined geochemical & seismic observations

Through integration of multiple data streams to monitor volcanic unrest scientists are able to make more robust eruption forecast and to obtain a more holistic interpretation of volcanic systems. We examined gas emission and gas geochemistry, seismic and petrologic data recorded during the 2015 unrest of Cotopaxi (Ecuador) in order to decipher the origin and temporal evolution of this eruption. Identification of families of similar seismic events and the use of seismic amplitude ratios reveals temporal changes in volcanic processes. SO2 (300 to 24000 t/d), BrO/SO2 (5-10 x10-5), SO2/HCl (5.8 ± 4.8 and 6.6 ± 3.0) and CO2/SO2 (0.6 to 2.1) measured throughout the eruption indicate a shallow magmatic source. Bulk ash and glass chemistry indicate a homogenous andesitic (SiO2 wt%=56.94 ± 0.25) magma having undergone extensive S-exsolution and degassing during ascent. These data lead us to interpret this eruption as a magma intrusion and ascend to shallow levels. The intrusion progressively interacted with the hydrothermal system, boiled off water, and produced hydromagmatic explosions. A small volume of this intrusion continued to fragment and produced episodic ash emissions until it was sufficiently degassed and rheologically stiff. Based on the 470 kt of measured SO2 we estimate that ~ 65.3 x106 m3 of magma were required to supply the emitted gases. This volume exceeds the volume of erupted juvenile material by a factor of 50. This result emphasizes the importance of careful monitoring of Cotopaxi to identify the intrusion of a new batch of magma, which could rejuvenate the non-erupted material.

Geochemistry, Geophysics, Geosystems

Optimization of salt marsh management at the Moosehorn National Wildlife Refuge, Maine, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing tidal marsh management decisions at the Moosehorn National Wildlife Refuge in Maine. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of four marsh management units within the refuge, totaling about 13 hectares, and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that could be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per marsh management unit, that could maximize total management benefits at different cost constraints at the refuge scale. Results indicated that, for the objectives and actions considered here, total management benefits may increase consistently up to $ 1,000, and may continue to increase at a lower rate with further expenditures. Potential management actions in optimal portfolios at total costs less than or equal to $ 1,000 included improving nesting habitat for Ammodramus nelsoni (Nelson’s sparrow) or restoring hydrologic connections to the upper marsh in one marsh management unit (Hobart Stream West). The potential management benefits were derived from expected increases in the density of nekton and of spiders (as an indicator of trophic health). The prototype presented here does not resolve management decisions; rather, it provides a framework for decision making at the Moosehorn National Wildlife Refuge that can be updated for implementation as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge.

Maine

Nature's Notebook 2010: Data & participant summary

The USA National Phenology Network (USA‐NPN) seeks to engage volunteer observers to collect phenology observations of plants and animals using consistent standards and to contribute to the USANPN National Phenology Database (NPDb). The commencement of 2010 marked the second functional year of Nature’s Notebook , the online phenology observation program developed by the National Coordinating Office (NCO) of the USA‐NPN. The addition of animal species for monitoring was a major enhancement to Nature’s Notebook in 2010. In 2010, with minimal advertising or marketing, 796 new observers registered with Nature’s Notebook and 426 observers reported phenology observations on one or more plants or animals via the online interface. Over 200,000 data records were added to the NPDb. Observations were reported on 179 species of plants and 58 species of animals. The plant species most frequently observed include red maple ( Acer rubrum ), quaking aspen ( Populus tremuloides ), American beech ( Fagus grandifolia ), northern red oak ( Quercus rubra ), and flowering dogwood ( Cornus florida ). The animal species most frequently observed were American robin ( Turdus migratorius ), black‐capped chickadee ( Poecile atricapillus ), American goldfinch ( Carduelis tristis ), bumblebee ( Bombus spp.), and white‐tailed deer ( Odocoileus virginianus ). As in 2009, participants tended to stay involved, reporting most phenophases for an average of nearly ten unique dates during the year. In addition, nearly two hundred participants who submitted observations in previous years continued to participate in 2010. This sustained participation suggests that the Nature’s Notebook interface and the status monitoring protocols inherent in Nature’s Notebook are both conducive to engaging the public and keeping them involved. Data submitted by Nature’s Notebook participants show patterns that follow latitude and elevation. Multiple years of observations now allow for year‐to‐year comparisons within and across species. As such, these data should be useful to a variety of stakeholders interested in the spatial and temporal patterns of plant and animal activity on a national scale; through time, these data should also empower scientists, resource managers, and the public in decision‐making and adapting to variable and changing climates and environments. Data submitted to Nature’s Notebook and supporting metadata are available for download at www.usanpn.org/results/data. Additionally, data visualization tools are available online at www.usanpn.org/results/visualizations.

USA-NPN Technical Series

Anatomical and genetic variation of western Oxyloma (Pulmonata: Succineidae) concerning the endangered Kanab ambersnail ( Oxyloma haydeni kanabense ) in Arizona and Utah

The land snail genus Oxyloma (Pulmonata: Succineidae) includes the Federally endangered Kanab ambersnail (Oxyloma haydeni kanabense Pilsbry), which is known at the time of this study from only two locations in the United States: Three Lakes, Utah, and Vaseys Paradise, Arizona, on the Colorado River in Grand Canyon National Park. Since 1994, the Kanab ambersnail has received much attention because its presence at Vaseys Paradise has implications for the ecosystem-wide management of the Colorado River. This attention is primarily because an experimental high-flow release of water from Glen Canyon Dam in 1996 destroyed or degraded Kanab ambersnail habitat at Vaseys Paradise. This experimental high flow was designed to replicate natural flow regimes throughout the Grand Canyon river corridor. However, as a result of the habitat destruction at Vaseys Paradise, in 1996, the U.S. Fish and Wildlife Service ruled that no further experimental high-discharge floods could be carried out until additional Kanab ambersnail populations were discovered or established. This mandate created a situation where the management of a single endangered species conflicted directly with the management of an entire ecosystem. Although since 1996, the U.S. Fish and Wildlife Service has permitted the use of flows as high as stage heights equivalent to 44,000 cubic feet per second, higher flows were requested by various Grand Canyon stakeholders and scientists but were not possible owing to low storage of Lake Powell. Adding to the controversy about Oxyloma and the Kanab ambersnail were previous anatomical and genetic analyses of the genus, which showed that genetic characteristics of specimens did not correspond with their identifications based on traditional taxonomic criteria, raising questions about the validity of the taxonomy of Oxyloma and the protected status of Kanab ambersnails. Specifically, a previous study suggested that the endangered Kanab ambersnail population at Three Lakes was more closely related to other, non-endangered ambersnail populations across the Southwest. In contrast, the Kanab ambersnail population at Vaseys Paradise appeared to be genetically distinct from all other ambersnail populations studied. Management options for the ambersnail population at Vaseys Paradise, at the time of this study, conflict with ecosystem-wide measures proposed to benefit other natural resources in the Grand Canyon. The U.S. Fish and Wildlife Service will not revise the 1995 Kanab Ambersnail Recovery Plan until further genetic and anatomical analyses provide more fine-scale taxonomic resolution of the identity of Oxyloma populations on the Colorado Plateau and elsewhere in the American Southwest. Likewise, interagency cooperators cannot revise down-listing criteria for the Kanab ambersnail until substantial evidence is provided identifying distinct Oxyloma taxa or a larger group of conspecifics that reasonably could be managed as one species. Therefore, given the current controversy about the taxonomy of Oxyloma and the endangered Kanab ambersnail, new detailed analyses were completed of morphological and genetic variation from many Oxyloma specimens collected at 12 western North American locations. These new data have allowed us to evaluate many issues related to Kanab ambersnail taxonomy. Using this dataset, the study of shells and anatomy indicates that the holotype of Oxyloma haydeni kanabense plausibly can be regarded as a member of the same species as the populations of Oxyloma analyzed in this study. Additionally, the presence of gene flow among all populations is evidence that they are members of the same species. Almost all the observed genetic diversity can be accounted for by short-distance or long-distance dispersal events between populations in this study. Our major taxonomic conclusion is that all samples collected for this study were drawn from populations of the same species.

Arizona;Utah

Climate change adaptation thinking for managed wetlands

Climate change presents new and ongoing challenges to natural resource management. To confront these challenges effectively, managers need to develop proactive adaptation strategies to prepare for and deal with the effects of climate change. We engaged managers and biologists from several midwestern U.S. Fish and Wildlife Service field stations to understand recent and future climate change effects, identify adaptation barriers and opportunities, and pilot an approach for integrating adaptation thinking into management planning. To start, three structured discussions informed our understanding of how managers currently deal with climate change effects, the strategies being implemented to cope, and the barriers that limit climate change adaptation efforts. We used these insights to develop a multiday virtual workshop geared toward identifying potential adaptation strategies for managed wetlands. First, we developed a conceptual model to visualize how management actions are used to meet habitat objectives within wetland management systems. Next, we discussed how climate change may affect management actions and objectives; we used this understanding of potential effects to spatially assess vulnerability of managed wetlands to climate change. Using a scenario planning approach, we incorporated multiple potential future conditions and identified effects and adaptation strategies that could be considered for each scenario. As a result, several adaptation strategies for managed wetlands under dry and wet future scenarios were identified that can be applied when developing site-specific adaptation plans. Based on our piloted approach, we determined it would be important to have an adaptation team composed of scientists and managers to facilitate discussions, develop appropriate scenarios, and identify realistic adaptation options. We document the tools, findings, and adaptation thinking process taken to enhance adaptation efforts of managed wetlands. The adaptation thinking process can be applied to advance adaptation efforts in other habitats, ecosystems, and site-specific land management.

Open-File Report

Optimization of salt marsh management at the Stewart B. McKinney National Wildlife Refuge, Connecticut, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing tidal marsh management decisions at the Stewart B. McKinney National Wildlife Refuge in Connecticut. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of two marsh management units within the refuge and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that would be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per marsh management unit, that would maximize total management benefits at different cost constraints at the refuge scale. Results indicated that, for the objectives and actions considered here, total management benefits may increase consistently up to approximately $ 1,190,000, but that further expenditures may yield diminishing return on investment. Management actions in optimal portfolios at total costs less than $1,190,000 included controlling avian predators in both management units, managing stormwater on lands adjacent to one marsh management unit, and removing a tide gate and breaching a dike to improve tidal flow in the other marsh management unit. The management benefits were derived from expected increases in the numbers of spiders (as an indicator of trophic health) and tidal marsh obligate birds, and an expected decrease in the use of herbicides to control invasive vegetation. The prototype presented here provides a framework for decision making at the Stewart B. McKinney National Wildlife Refuge that can be updated as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuges.

Connecticut

Studies of volcanoes of Alaska by satellite radar interferometry

Interferometric synthetic aperture radar (InSAR) has provided a new imaging geodesy technique to measure the deformation of volcanoes at tens-of-meter horizontal resolution with centimeter to subcentimeter vertical precision. The two-dimensional surface deformation data enables the construction of detailed numerical models allowing the study of magmatic and tectonic processes beneath volcanoes. This paper summarizes our recent: InSAR studies over the Alaska-Aleutian volcanoes, which include New Trident, Okmok, Akutan, Augustine, Shishaldin, and Westdahl volcanoes. The first InSAR surface deformation over the Alaska volcanoes was applied to New Trident. Preliminary InSAR study suggested that New Trident volcano experienced several centimeters inflation from 1993 to 1995. Using the InSAR technique, we studied the 1997 eruption of Okmok. We have measured ???1.4 m deflation during the eruption, ???20 cm pre-eruptive inflation during 1992 to 1995, and >10 cm post-eruptive inflation within a year after the eruption, and modeled the deformations using Mogi sources. We imaged the ground surface deformation associated with the 1996 seismic crisis over Akutan volcano. Although seismic swarm did not result in an eruption, we found that the western part of the volcano uplifted ???60 cm while the eastern part of the island subsided. The majority of the complex deformation field at the Akutan volcano was modeled by dike intrusion and Mogi inflation sources. Our InSAR results also indicate that the pyroclastic flows from last the last eruption have been undergoing contraction/subsidence at a rate of about 3 cm per year since 1992. InSAR measured no surface deformation before and during the 1999 eruption of Shishaldin and suggested the eruption may be a type of open system. Finally, we applied satellite radar interferometry to Westdahl volcano which erupted 1991 and has been quiet since. We discovered this volcano had inflated about 15 cm from 1993 to 1998. In summary, satellite radar interferometry can not only be used to study a volcanic eruption, but also to detect aseismic deformation at quiescent volcanoes preceding a seismic swarm; it is a useful technique to study volcanic eruptions as well as to guide scientists to better focus their monitoring efforts.

Alaska

Estimating incision healing rate for surgically implanted acoustic transmitters from recaptured fish

Background Intracoelomic implantation of electronic tags has become a common method in fishery research, but rarely are fish examined by scientists after release to understand the extent that surgical incisions have healed. Walleye ( Sander vitreus ) are a valuable, highly exploited fishery resource in the Laurentian Great Lakes. Here, fishery capture of walleye with internal acoustic transmitters combined with a high reward program provided multiple opportunities to examine photographs and quantify the status of surgical incisions. Walleye ( n = 926) from reef and river spawning populations in Lake Erie and Lake Huron were implanted with acoustic transmitters during spring spawning events from 2011 to 2016. Incisions were closed with polydioxanone monofilament using two to three interrupted sutures. Out of 276 recaptured fish, 60 incision sites were clearly visible in photographs, and these were scored by two independent readers for incision closure, inflammation, and the presence of sutures. Results While incision sites were completely closed by 61 days post-release (95% CI 44–94), sutures remained for up to 866 days. Sutures were expelled serially during a protracted period, and the probability of observing at least one suture in a recaptured fish declined below 50% after 673 days (95% CI 442–1016). Inflammation at the incision increased during the first 71 days and then declined monotonically, remaining detectable at low levels. Conclusion Our results emphasized that sutures remained in free-ranging fish past the time when they were beneficial for incision healing. Most dissolvable sutures have been designed for use in endotherms where the body temperature and internal milieu differ dramatically from the conditions experienced by fishes in temperate climates. Identification of new suture materials for fish that facilitate healing while absorbing or dissolving in a reasonable period (e.g., a few weeks to three months) in colder temperatures (e.g., <12 °C) would be beneficial to mitigate potential adverse impacts from inflammation at the incision.

Animal Biotelemetry

Mormon cricket control in Utah's west desert - Evaluation of impacts of the pesticide Diflubenzuron on nontarget arthropod communities

Grasshopper and Mormon cricket (Orthoptera) populations periodically build to extremely high numbers and can cause significant economic damage in rangelands and agricultural fields of the Great Plains and Intermountain West. A variety of insecticides have been applied to control population outbreaks, with recent efforts directed at minimizing impacts to nontarget fauna in treated ecosystems. A relatively new insecticide for control of Orthoptera is diflubenzuron, which acts to inhibit chitin production, ultimately causing death during the molt following ingestion of the insecticide. All arthropods, including insects, mites, and crustaceans, use chitin to build their exoskeletons and will die if they are unable to produce it during the next molt. Diflubenzuron is not taxon specific—it affects all arthropods that ingest it, except adult insects, which do not molt. Consequently, application of this pesticide has the potential to significantly reduce not only target populations but all terrestrial and aquatic arthropods within treatment zones. Some research has been done in the Great Plains on the impact of diflubenzuron on nontarget arthropods in the context of grasshopper-control programs, but no work has been done in the Great Basin in Mormon cricket-control areas. This study was instigated in anticipation of the need for extensive control of Orthoptera outbreaks in Utah’s west desert during 2005, and it was designed to sample terrestrial and aquatic arthropod communities in both treated and untreated zones. Three areas were sampled: Grouse Creek, Ibapah, and Vernon. High mortality of Mormon cricket eggs in the wet, cool spring of 2005 restricted the need to control Mormon crickets to Grouse Creek. Diflubenzuron was applied (aerial reduced agent-area treatment) in May 2005. Terrestrial and aquatic arthropod communities were sampled before and after application of diflubenzuron in the Grouse Creek area of northwestern Utah in May and June of 2005. In July 2005, U.S. Geological Survey scientists sampled areas in Ibapah and Vernon that had been treated with diflubenzuron in 2004, along with adjacent untreated areas. Pitfall traps at four treated and four untreated sites were used to collect ground-dwelling terrestrial arthropods. Semiquantitative sweep surveys of aquatic habitats were made before treatment, 2 weeks after treatment, and 4 months after treatment (after leaf fall) at Grouse Creek. One-year post-treatment samples were collected by using the same methods for terrestrial and aquatic arthropods at Ibapah and Vernon in July 2005 (treatments applied in June 2004). More than 124,000 terrestrial arthropods were collected from the three study areas, and more than 200,000 aquatic invertebrates were collected in the aquatic samples. Direct effects of diflubenzuron on aquatic and terrestrial arthropod communities were not apparent in our data from Grouse Creek. The treatment was designed to avoid spraying pesticide on water bodies, and no measurable effects on aquatic communities from either springs or streams were observed, with the exception of the reduction of taxa richness at Vernon (a result confounded by elevational differences in the treatment and nontreatment zones). Some trends indicate diflubenzuron may affect some terrestrial taxa. Ant communities showed some differences, with possible lag effects at Ibapah and Vernon. Forelius was more abundant, while Tapinoma and, perhaps, Formica declined in treated zones in these two study areas. Solenopsis also was more numerous at treated Ibapah sites but varied without pattern at Vernon. Scorpions were abundant at Grouse Creek and Ibapah but rare at Vernon. Numbers did not change during several weeks at Grouse Creek, but at Ibapah, numbers at treated sites were much lower than at untreated sites. The Lygaeidae (in the order Hemiptera) were more abundant in the untreated zones at Ibapah and Vernon, although significantly so only at Ibapah. Lygaeidae were absent from the treated zone at Grouse Creek (before and after treatment) but were present after treatment in the untreated zone. Additional research is recommended to determine more explicitly whether these taxa are sensitive to diflubenzuron applications in the Great Basin.

Utah

The Science Application for Risk Reduction (SAFRR) Scenario Retrospective 2006–21

The U.S. Geological Survey Science Application for Risk Reduction (SAFRR) Project has created four major hazard scenarios—ShakeOut, ARkStorm, Tsunami Scenario, and HayWired—with multidisciplinary teams of scientists, academics, and practitioners. By presenting a clear and highly detailed narrative of potential damage from earthquakes, tsunamis, and winter storms, the scenarios are intended to foster science-based preparedness strategies and disaster risk reduction innovations. This evaluation explores the presence of these scenarios in cultures of preparedness and their role in disaster risk reduction, and reports barriers and enablers to creating and using these scenarios. To do this, the evaluation team developed a mixed-methods study that includes background research for each scenario, qualitative interviews, data collection of media and academic engagement, and examples of SAFRR scenario use in hazard planning. The data collection led to the development of a hazard scenario evaluation tool that combines theories from multiple disciplines to create a best practice set of categories that aid in scenario use and efficacy. The evaluation tool categories—actionable, longitudinal, educational, relevant, and thorough—are organized as a series of checklists that are used to determine how the scenario planners prioritized different aspects of the scenarios to achieve their goals. The tool could also be used to aid scenario planning for other regional disaster risk reduction scenarios of a similar scope. Findings from this evaluation include detailed narratives of scenario use over time, demonstrating that the scenarios have continued to be useful in hazard planning and preparedness across the globe. Examples of use include using the scenarios to advocate for resilient building and development policy, to promote hazard response exercises, and as source data for the development of new hazard models and science. The scenarios themselves are innovative, both in the hazard science created for scenario development and in their branding and public engagement as U.S. Geological Survey products. This SAFFR retrospective is a descriptive evaluation and does not formally address the effects of the scenarios. Nevertheless, this report does include evidence of scenario affects as discovered through qualitative interviews and research, which is presented to explore how the SAFRR scenarios have been received by cultures of preparedness.

Scientific Investigations Report

Sub-tidal benthic habitats of central San Francisco Bay and offshore Golden Gate area: A review

Deep-water potential estuarine and marine benthic habitat types were defined from a variety of new and interpreted data sets in central San Francisco Bay and offshore Golden Gate area including multibeam echosounder (MBES), side-scan sonar and bottom grab samples. Potential estuarine benthic habitats identified for the first time range from hard bedrock outcrops on island and mainland flanks and some Bay floor regions, to soft, very dynamic bedforms consisting of sediment waves and ripples. Soft sediment ranges from mud and sand to bimodal (two or more grain sizes) sediment of gravel, pebbles, and cobbles. In addition, considerable anthropogenic features (i.e., pipelines, bridge abutments, dredged channels, dump sites) were distinguished. Of the 52 potential benthic habitat types mapped (compressed to 14 types for this paper), 24 were of un-consolidated sediment with five of these comprised of dynamic bedforms or sediment waves and dunes, five of mixed (soft over hard) substrate type, six of hard substrate or rock outcrop, 13 of anthropogenically disturbed areas and four hard anthropogenic features. Rock outcrops and rubble are considered the primary habitat type for rockfish ( Sebastes spp. ), lingcod ( Ophiodon elongatus ) and in shallow water for herring ( Clupea pallasii ) spawning. Dynamic bedforms such as sand waves are considered potential foraging habitat for juvenile lingcod, may be sub-tidal habitat for the Pacific sand lance ( Ammodytes hexapterus ) forage fish, and possibly resting habitat for migratory fishes such as sturgeon ( Acipenser medirostris ). The potential marine benthic habitats identified in San Francisco Bay are not unlike those found in other estuaries around the world and this study should contribute significant information that will be of interest to scientists, managers and fishers investigating and utilizing bay and estuarine resources. As described in the many papers of this special issue, the understanding of the interrelationship of geology and ecology is critical to the identification of essential habitats and the sustainability of a healthy ecosystem.

California

Classification of CO 2 Geologic Storage: Resource and Capacity

The use of the term capacity to describe possible geologic storage implies a realistic or likely volume of CO 2 to be sequestered. Poor data quantity and quality may lead to very high uncertainty in the storage estimate. Use of the term "storage resource" alleviates the implied certainty of the term "storage capacity". This is especially important to non- scientists (e.g. policy makers) because "capacity" is commonly used to describe the very specific and more certain quantities such as volume of a gas tank or a hotel's overnight guest limit. Resource is a term used in the classification of oil and gas accumulations to infer lesser certainty in the commercial production of oil and gas. Likewise for CO 2 sequestration, a suspected porous and permeable zone can be classified as a resource, but capacity can only be estimated after a well is drilled into the formation and a relatively higher degree of economic and regulatory certainty is established. Storage capacity estimates are lower risk or higher certainty compared to storage resource estimates. In the oil and gas industry, prospective resource and contingent resource are used for estimates with less data and certainty. Oil and gas reserves are classified as Proved and Unproved, and by analogy, capacity can be classified similarly. The highest degree of certainty for an oil or gas accumulation is Proved, Developed Producing (PDP) Reserves. For CO 2 sequestration this could be Proved Developed Injecting (PDI) Capacity. A geologic sequestration storage classification system is developed by analogy to that used by the oil and gas industry. When a CO 2 sequestration industry emerges, storage resource and capacity estimates will be considered a company asset and consequently regulated by the Securities and Exchange Commission. Additionally, storage accounting and auditing protocols will be required to confirm projected storage estimates and assignment of credits from actual injection. An example illustrates the use of these terms and how storage classification changes as new data become available. ?? 2009 Elsevier Ltd. All rights reserved.

Conference Paper

Introduction to recommended capabilities and instrumentation for volcano monitoring in the United States

Introduction The National Volcano Early Warning System (NVEWS) was authorized and partially funded by the U.S. Government in 2019. In response, the U.S. Geological Survey (USGS) Volcano Hazards Program asked its scientists to reflect on and summarize their views of best practices for volcano monitoring. The goal was to review and update the recommendations of a previous report (Moran and others, 2008) and to provide a more detailed analysis of capabilities and instrumentation for monitoring networks for U.S. volcanoes. This Scientific Investigations Report and its chapters reflect those USGS scientists’ views and summaries and will serve as a guide for future network upgrades funded through NVEWS. Given the well-documented hazards posed by volcanoes to population centers and aviation (for example, Blong, 1984; Scott, 1989; Neal and others, 1997, 2019; Guffanti and others, 2010; Shroder and Papale, 2014; Prata and Rose, 2015; Palmer, 2020), volcano monitoring is critical for ensuring public safety and for mitigating the impacts of volcanic activity. Accurate and timely forecasts are facilitated by well-designed monitoring networks that are in place long enough to allow for background behavior to be recognized and understood. Because precursory signals may be limited and unrest may progress rapidly to an eruption, our goal is to deploy monitoring systems that enable detection of the reactivation of dormant volcanoes as early as possible, allowing for public safety and risk mitigation. NVEWS planning is also informed by the results of Ewert and others (2005, 2018), whereby 161 U.S. volcanoes are currently categorized and ranked commensurate with their relative threat. In each chapter, author(s) considered the need for some redundancy of instrumentation and telemetry, given the likelihood of occasional equipment failure, particularly in extreme and remote environments. Establishing digital telemetry networks requires advanced planning, sighting, radio-shot testing, and, inevitably, troubleshooting in the field. This is harder to achieve rapidly during a crisis; thus, an important goal for monitoring U.S. volcanoes is to establish digital telemetry backbones with redundancy and extra capacity to absorb additional instruments should a volcano begin to exhibit signs of unrest (fig. A1). The National Telecommunications and Information Administration (NTIA) imposed new regulations in the United States, eliminating the use of older analog radios for many purposes, which had been one previous means for redundant data delivery. However, the resulting conversion from analog to digital systems usefully enables stations to accommodate new and multivariate real-time data streams (for example, Global Navigation Satellite System [GNSS] receivers, infrasound arrays, gas spectrometers, visible and infrared cameras, and broadband seismometers). We note that other USGS and broader national and international hazard programs can leverage NVEWS instrumentation plans. Examples of this include the following: Improved seismic coverage of volcanoes will increase the capability of the USGS Earthquake Hazards Program to detect and locate earthquakes, estimate ground shaking, and provide timely early warnings through the ShakeAlert Earthquake Early Warning System (Given and others, 2018). The National Oceanic and Atmospheric Administration’s Tsunami Program will benefit from additional seismic stations, particularly within the sparsely instrumented Aleutian Islands, Northern Mariana Islands, and American Samoa. Infrasound stations can detect signals from landslides, debris flows and lahars, floods, and weather events, providing benefits to the National Weather Service and the USGS Landslide Hazards Program.

Scientific Investigations Report

Optimization of salt marsh management at the Rhode Island National Wildlife Refuge Complex through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing salt marsh management decisions at the Rhode Island National Wildlife Refuge Complex. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of nine salt marsh management units within the refuge complex and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that would be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per salt marsh management unit, that would maximize total management benefits at different cost constraints at the refuge scale. Results indicated that, for the objectives and actions considered here, total management benefits may increase consistently up to approximately $ 150,000, but that further expenditures may yield diminishing return on investment. Management actions in optimal portfolios at total costs less than $ 150,000 included digging runnels (by hand or machine) on the marsh surface to improve drainage in eight management units, applying sediment to the marsh surface (thin layer deposition) in one management unit, constructing islands for use by tidal marsh obligate birds in two management units, and controlling Phragmites australis in one management unit. The management benefits were derived from expected improvements in the capacity for marsh elevation to keep pace with sea-level rise and increases in numbers of spiders (as an indicator of trophic health) and tidal marsh obligate birds. The prototype presented here provides a framework for decision making at the Rhode Island National Wildlife Refuge Complex that can be updated as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge.

Rhode Island

Optimization of salt marsh management at the Petit Manan National Wildlife Refuge of the Maine Coastal Islands National Wildlife Refuge Complex, Maine, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objectives. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, applied an existing, regional framework for structured decision making to develop a prototype tool for optimizing tidal marsh management decisions at the Petit Manan National Wildlife Refuge of the Maine Coastal Islands National Wildlife Refuge Complex in Maine. Refuge biologists, refuge managers, and research scientists identified multiple potential management actions to improve the ecological integrity of two marsh management units within the refuge complex, totaling about 47 hectares, and estimated the outcomes of each action in terms of performance metrics associated with each management objective. Value functions previously developed at the regional level were used to transform metric scores to a common utility scale, and utilities were summed to produce a single score representing the total management benefit that could be accrued from each potential management action. Constrained optimization was used to identify the set of management actions, one per marsh management unit, that could maximize total management benefits at different cost constraints at the refuge scale. Results indicated that, for the objectives and actions considered here, total management benefits may increase consistently up to $ 9,545, and may continue to increase at a lower rate with further expenditures. Potential management actions in optimal portfolios at total costs less than or equal to $ 9,545 included removing dikes to restore tidal flow in the Gouldsboro Bay management unit and installing runnels to improve surface-water drainage in the Sawyers Marsh management unit. The potential management benefits were derived from expected increases in the numbers of tidal marsh obligate breeding birds and density of spiders (as an indicator of trophic health), reduced duration of flooding, and increased capacity of marsh elevation to keep pace with sea-level rise. The prototype presented here does not resolve management decisions; rather, it provides a framework for decision making at the Maine Coastal Islands National Wildlife Refuge Complex that can be updated for implementation as new data and information become available. Insights from this process may also be useful to inform future habitat management planning at the refuge complex.

Maine