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At least 577 records · Page 32Linked to original sources

USGS2017

Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape

Aim Climate warming is causing extensive loss of glaciers in mountainous regions, yet our understanding of how glacial recession influences evolutionary processes and genetic diversity is limited. Linking genetic structure with the influences shaping it can improve understanding of how species respond to environmental change. Here, we used genome-scale data and demographic modelling to resolve the evolutionary history of Lednia tumana , a rare, aquatic insect endemic to alpine streams. We also employed a range of widely used data filtering approaches to quantify how they influenced population structure results. Location Alpine streams in the Rocky Mountains of Glacier National Park, Montana, USA. Taxon Lednia tumana , a stonefly (Order Plecoptera) in the family Nemouridae. Methods We generated single nucleotide polymorphism data through restriction-site associated DNA sequencing to assess contemporary patterns of genetic structure for 11 L. tumana populations. Using identified clusters, we assessed demographic history through model selection and parameter estimation in a coalescent framework. During population structure analyses, we filtered our data to assess the influence of singletons, missing data and total number of markers on results. Results Contemporary patterns of population structure indicate that L. tumana exhibits a pattern of isolation-by-distance among populations within three genetic clusters that align with geography. Mean pairwise genetic differentiation ( F ST ) among populations was 0.033. Coalescent-based demographic modelling supported divergence with gene flow among genetic clusters since the end of the Pleistocene (~13-17 kya), likely reflecting the south-to-north recession of ice sheets that accumulated during the Wisconsin glaciation. Main conclusions We identified a link between glacial retreat, evolutionary history and patterns of genetic diversity for a range-restricted stonefly imperiled by climate change. This finding included a history of divergence with gene flow, an unexpected conclusion for a mountaintop species. Beyond L. tumana , this study demonstrates the complexity of assessing genetic structure for weakly differentiated species, shows the degree to which rare alleles and missing data may influence results, and highlights the usefulness of genome-scale data to extend population genetic inquiry in non-model species.

Montana↗

USGS2022

Ceratocystis lukuohia-infested ambrosia beetle frass as inoculum for Ceratocystis wilt of ʻōhiʻa (Metrosideros polymorpha)

Metrosideros polymorpha (‘ōhi‘a) trees in Hawaiʻi are dying from two distinct diseases, collectively referred to as rapid ‘ōhi‘a death (ROD), caused by Ceratocystis lukuohia and Ceratocystis huliohia . Boring dust (frass) released when ambrosia beetles attack and colonize infected trees has been suspected as a transmission source. We sampled ambrosia beetle frass from six locations on Hawaiʻi Island and screened samples for Ceratocystis DNA and fungal viability. Ceratocystis DNA was detected in 79% of frass samples and 61% were viable. To assess the infectivity of C . lukuohia -colonized frass, M . polymorpha seedlings were wound-inoculated with frass in growth chamber trials. Wilt incidence was 40% in the first trial and 15% in the second. Frass particles naturally infested with C . lukuohia were treated with a cytoplasmic stain and microscopically examined; thick-walled chlamydospores were found in all samples. The chlamydospores appeared to be derived from aleurioconidia. Ceratocystis survival in frass was assessed in a baiting experiment conducted under varying environmental regimes; viability decreased with increasing temperature, frass age and decreasing humidity. After 6 months, 90% of the samples exhibited viable C . lukuohia at the lowest temperatures. Results confirmed that C . lukuohia chlamydospores are the fungal inoculum within ambrosia beetle frass and can induce wilt when introduced to M . polymorpha wounds. Although ambrosia beetles or other insects may serve as vectors, the present work supports the hypothesis that Ceratocystis species may be dispersed in frass, which can inform ongoing efforts to manage ROD across Hawaiʻi's native forests.

Hawaii↗

USGS2020

Food web controls on mercury fluxes and fate in the Colorado River, Grand Canyon

Mercury (Hg) biomagnification in aquatic food webs is a global concern; yet, the ways species traits and interactions mediate these fluxes remain poorly understood. Few pathways dominated Hg flux in the Colorado River despite large spatial differences in food web complexity, and fluxes were mediated by one functional trait, predation resistance. New Zealand mudsnails are predator resistant and a trophic dead end for Hg in food webs we studied. Fishes preferred blackflies, which accounted for 56 to 80% of Hg flux to fishes, even where blackflies were rare. Food web properties, i.e., match/mismatch between insect production and fish consumption, governed amounts of Hg retained in the river versus exported to land. An experimental flood redistributed Hg fluxes in the simplified tailwater food web, but not in complex downstream food webs. Recognizing that species traits, species interactions, and disturbance mediate contaminant exposure can improve risk management of linked aquatic-terrestrial ecosystems.

Arizona, Nevada↗

USGS2023

Density declines, richness increases, and composition shifts in stream macroinvertebrates

Documenting trends of stream macroinvertebrate biodiversity is challenging because biomonitoring often has limited spatial, temporal, and taxonomic scopes. We analyzed biodiversity and composition of assemblages of >500 genera, spanning 27 years, and 6131 stream sites across forested, grassland, urban, and agricultural land uses throughout the United States. In this dataset, macroinvertebrate density declined by 11% and richness increased by 12.2%, and insect density and richness declined by 23.3 and 6.8%, respectively, over 27 years. In addition, differences in richness and composition between urban and agricultural versus forested and grassland streams have increased over time. Urban and agricultural streams lost the few disturbance-sensitive taxa they once had and gained disturbance-tolerant taxa. These results suggest that current efforts to protect and restore streams are not sufficient to mitigate anthropogenic effects.

Science Advances↗

USGS2011

Economic importance of bats in agriculture

White-nose syndrome (WNS) and the increased development of wind-power facilities are threatening populations of insectivorous bats in North America. Bats are voracious predators of nocturnal insects, including many crop and forest pests. We present here analyses suggesting that loss of bats in North America could lead to agricultural losses estimated at more than $3.7 billion/year. Urgent efforts are needed to educate the public and policy-makers about the ecological and economic importance of insectivorous bats and to provide practical conservation solutions.

Science↗

USGS1968

Partial hydrolysis of dieldrin by Aerobacter aerogenes

Although dieldrin (1,2,3,4,10,10-hexachloro- 6,7-epoxy-1 ,4 ,4a ,5 ,6 ,7 ,8, 8a-octahydro-1 ,4-endo, exo-5, 8-dimethanonaphthalene) metabolism by mammals (F. Korte and H. Arent, Life Sci. 4:2017, 1965) and insects (D. F. Heath and M. Vanderkar, Brit. J. Ind. Med. 21:269, 1964) has been reported, little is known about the degradation of this important pesticide by microorganisms. Korte et al. (Ann. Chem. Liebigs 656:135, 1962) and Chacko et al. (Science 154: 893, 1966) reported that a number of ubiquitous microorganisms were incapable of degrading dieldrin; however, more recently Matsumura and Boush (Science 156:959, 1967) isolated several species of Pseudomonas and Bacillus which could degrade dieldrin, from a number of soil samples having similar activity. They did not specifically attempt to identify the dieldrin metabolites formed, but they did suggest, on the basis of an identical RF value with an authentic control that 6,7-trans-dihydroxydihydroaldrin (aldrin diol) might be a major product. Work carried out concurrently in this laboratory has shown that another ubiquitous bacterium, Aerobacter aerogenes , converts dieldrin in vitro to a compound chromatographically similar to 6,7-trans-dihydroxydihydroaldrin.

Applied Microbiology↗

USGS2020

Virome of bat guano from nine northern California roosts

Bats are hosts to a large variety of viruses, including many capable of cross species transmissions to other mammals or humans. We characterized the virome in guano from five common bat species in 9 Northern California roosts and a pool of 5 individual bats. Genomes belonging to 14 viral families known to infect mammals and 17 viral families infecting insects or of unknown tropism were detected. Near or complete genomes of a novel parvovirus, astrovirus, nodavirus, CRESS-DNA viruses and densoviruses and more partial genomes of a novel alphacoronavirus, and bunyavirus were characterized. Lower numbers of reads with >90% amino acid identity to previously described calicivirus, circovirus, adenoviruses, hepatovirus, bocaparvoviruses, and polyomavirus in other bat species were also found likely reflecting their wide distribution among different bats. Unexpectedly a few sequence reads of canine parvovirus 2 and the recently described mouse kidney parvovirus were also detected and their presence confirmed by PCR possibly originating from guano contamination by carnivores and rodents. The majority of eukaryotic viral reads were highly divergent indicating that numerous viruses still remain to be characterized even from such a heavily investigated order as Chiroptera.

California↗

USGS2015

Cyclic avian mass mortality in the northeastern United States is associated with a novel orthomyxovirus

Since 1998, cyclic mortality events in common eiders ( Somateria mollissima ), numbering in the hundreds to thousands of dead birds, have been documented along the coast of Cape Cod, Massachusetts, USA. Although longitudinal disease investigations have uncovered potential contributing factors responsible for these outbreaks, detecting a primary etiological agent has proven enigmatic. Here we identify a novel orthomyxovirus, tentatively named Wellfleet Bay virus (WFBV), as a potential causative agent of these outbreaks. Genomic analysis of WFBV revealed that it is most closely related to members of the Quaranjavirus genus within the family Orthomyxoviridae . Similar to other members of the genus, WFBV contains an alphabaculovirus gp64-like glycoprotein, which was demonstrated to have fusion activity, and also tentatively suggests that ticks (and/or insects) may vector the virus in nature. However, in addition to the six RNA segments encoding the prototypical structural proteins identified in other quaranjaviruses, a previously unknown RNA segment (segment 7) encoding a novel protein designated as VP7 was discovered in WFBV. Although WFBV shows low to moderate levels of sequence similarity to Quaranfil virus and Johnston Atoll virus , the original members of the Quaranjavirus genus, additional antigenic and genetic analyses demonstrated that it is closely related to the recently identified Cygnet River virus (CyRV) from South Australia, suggesting that WFBV and CyRV may be geographic variants of the same virus. Although the identification of WFBV in part may resolve the enigma of these mass mortality events, the details of the ecology and epidemiology of the virus remain to be determined. Importance The emergence or reemergence of viral pathogens resulting in large-scale outbreaks of disease in humans and/or animals is one of the most important challenges facing biomedicine. For example, understanding how orthomyxoviruses such as novel influenza A virus reassortants and/or mutants emerge to cause epidemic or pandemic disease is at the forefront of current global health concerns. Here we describe the emergence of a novel orthomyxovirus, Wellfleet Bay virus (WFBV), which has been associated with cyclic large-scale bird die-offs in the northeastern United States. This initial characterization study provides a foundation for further research into the evolution, epidemiology, and ecology of newly emerging orthomyxoviruses, such as WFBV, and their potential impacts on animal and/or human health.

Massachusets↗

USGS2021

Perspectives on the paleolimnology of the late Eocene Florissant lake from diatom and sedimentary evidence at Clare’s Quarry, Teller County, Colorado, USA

The late Eocene Florissant Formation in central Colorado is a rich and diverse continental Lagerstätte yielding well-preserved fossil assemblages from lacustrine and fluvial facies. This investigation focused on the lacustrine facies at Clare’s Quarry and used biotic and abiotic evidence to characterize aspects of the lake and processes that resulted in the accumulation and preservation of the host rock and its fossils. Autecology of modern analogs representing the fossil diatom taxa was used to augment sedimentary data in characterizing the lake, propose peripheral habitats within the catchment area, and suggest a terrestrial source for mudstone units. The sedimentary and stratigraphic record at the study site reveals a lake with sufficient depth to allow bottom waters to remain isolated and anoxic for long periods. Sediments that accumulated in the lake produced distinct lacustrine lithofacies that are interpreted as representing at least three modes of origin: stable lake, pyroclastic, and mud turbidite sedimentation. Slow, suspension settling of fine clays and volcanic ash into a moderately deep, stable lake resulted in laminated shales. These laminated shales contain frustules of diatoms from planktic and benthic lake habitats; diatoms transported into the lake from streams and wetlands; fish, mollusks, ostracods, and insects; and plants from marginal and upslope environments. Intermittent volcanic eruptions produced air-fall ash and granular tuff that accumulated as interbeds within the lake shales. Periods of stable lake sedimentation were frequently interrupted by rapid influxes of suspended fine clays, perhaps as mud-dominated turbidites that prograded into the lake at intervals of high runoff triggered by climatic, volcanic, or tectonic events.

Colorado↗

USGS2018

Rapid evolution meets invasive species control: The potential for pesticide resistance in sea lamprey

Rapid evolution of pest, pathogen and wildlife populations can have undesirable effects; for example, when insects evolve resistance to pesticides or fishes evolve smaller body size in response to harvest. A destructive invasive species in the Laurentian Great Lakes, the sea lamprey (Petromyzon marinus) has been controlled with the pesticide 3-trifluoromethyl-4-nitrophenol (TFM) since the 1950s. We evaluated the likelihood of sea lamprey evolving resistance to TFM by (1) reviewing sea lamprey life history and control; (2) identifying physiological and behavioural resistance strategies; (3) estimating the strength of selection from TFM; (4) assessing the timeline for evolution; and (5) analyzing historical toxicity data for evidence of resistance. The number of sea lamprey generations exposed to TFM was within the range observed for fish populations where rapid evolution has occurred. Mortality from TFM was estimated as 82-90%, suggesting significant selective pressure. However, 57 years of toxicity data revealed no increase in lethal concentrations of TFM. Vigilance and the development of alternative controls are required to prevent this aquatic invasive species from evolving strategies to evade control.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2021

As the prey thickens: Rainbow trout select prey based upon width not length

Drift-feeding fish are typically considered size-selective predators. Yet, few studies have explicitly tested which aspect of prey “size” best explains size selection by drift-foraging fish. Here, we develop a Bayesian discrete choice model to evaluate how attributes of both prey and predator simultaneously influence size-selective foraging. We apply the model to a large dataset of paired invertebrate drift ( n = 784) and rainbow trout ( Oncorhynchus mykiss ) diets ( n = 1028). We characterized prey “size” using six metrics (length, width, area, hemispherical area, volume, mass) and used pseudo- R 2 to determine which metric best explained observed prey selection across seven taxa. We found that rainbow trout are positively size-selective, they are selecting prey based upon differences in prey width, and size-selectivity increases with fish length. Rainbow trout demonstrated strong selection for the adult and pupae stages of aquatic insects relative to their larval stages. Our study provides strong empirical evidence for size-selective foraging in rainbow trout and demonstrates prey selection is based primarily upon width, not length or area as has been widely reported.

Arizona↗

USGS2014

Influence of stocking, site quality, stand age, low-severity canopy disturbance, and forest composition on sub-boreal aspen mixedwood carbon stocks

Low-severity canopy disturbance presumably influences forest carbon dynamics during the course of stand development, yet the topic has received relatively little attention. This is surprising because of the frequent occurrence of such events and the potential for both the severity and frequency of disturbances to increase as a result of climate change. We investigated the impacts of low-severity canopy disturbance and average insect defoliation on forest carbon stocks and rates of carbon sequestration in mature aspen mixedwood forests of varying stand age (ranging from 61 to 85 years), overstory composition, stocking level, and site quality. Stocking level and site quality positively affected the average annual aboveground tree carbon increment (C AAI ), while stocking level, site quality, and stand age positively affected tree carbon stocks (C TREE ) and total ecosystem carbon stocks (C TOTAL ). Cumulative canopy disturbance (DIST) was reconstructed using dendroecological methods over a 29-year period. DIST was negatively and significantly related to soil carbon (C SOIL ), and it was negatively, albeit marginally, related to C TOTAL . Minima in the annual aboveground carbon increment of trees (C AI ) occurred at sites during defoliation of aspen ( Populus tremuloides Michx.) by forest tent caterpillar ( Malacosoma disstria Hubner), and minima were more extreme at sites dominated by trembling aspen than sites mixed with conifers. At sites defoliated by forest tent caterpillar in the early 2000s, increased sequestration by the softwood component ( Abies balsamea (L.) Mill. and Picea glauca (Moench) Voss) compensated for overall decreases in C AI by 17% on average. These results underscore the importance of accounting for low-severity canopy disturbance events when developing regional forest carbon models and argue for the restoration and maintenance of historically important conifer species within aspen mixedwoods to enhance stand-level resilience to disturbance agents and maintain site-level carbon stocks.

Minnesota↗

USGS2002

Influence of eastern hemlock (Tsuga canadensis) forests on aquatic invertebrate assemblages in headwater streams

We conducted a comparative study in the Delaware Water Gap National Recreation Area to determine the potential long-term impacts of hemlock forest decline on stream benthic macroinvertebrate assemblages. Hemlock forests throughout eastern North America have been declining because of the hemlock woolly adelgid, an exotic insect pest. We found aquatic invertebrate community structure to be strongly correlated with forest composition. Streams draining hemlock forests supported significantly more total taxa than streams draining mixed hardwood forests, and over 8% of the taxa were strongly associated with hemlock. In addition, invertebrate taxa were more evenly distributed (i.e., higher Simpson's evenness values) in hemlock-drained streams. In contrast, the number of rare species and total densities were significantly lower in streams draining hemlock, suggesting that diversity differences observed between forest types were not related to stochastic factors associated with sampling and that streams draining mixed hardwood forests may be more productive. Analysis of stream habitat data indicated that streams draining hemlock forests had more stable thermal and hydrologic regimes. Our findings suggest that hemlock decline may result in long-term changes in headwater ecosystems leading to reductions in both within-stream (i.e., alpha) and park-wide (i.e., gamma) benthic community diversity.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2005

Changing patterns in coastal cutthroat trout (Oncorhynchus clarki clarki) diet and prey in a gradient of deciduous canopies

We examined the influence of riparian vegetation patterns on coastal cutthroat trout Oncorhynchus clarki clarki diet and prey from the summer of 2001 through the spring of 2002. Benthic and drifting invertebrates, allochthonous prey, and fish diet were collected from deciduous, conifer, and mixed sections of three Oregon coastal watersheds. The nine sites were best characterized as a continuum of deciduous cover, and shrub cover and proportion of deciduous canopy were positively correlated (r = 0.74). Most sources of prey (benthic invertebrate biomass, allochthonous invertebrate inputs, aquatic and total invertebrate drift) and aquatic prey ingested by coastal cutthroat trout were greater where shrub cover was more abundant. Only aquatic drift, total invertebrate drift, and allochthonous invertebrates were positively correlated with deciduous vegetation. Compared with coniferous sites, allochthonous invertebrates under deciduous and mixed canopies were almost 30% more abundant. Stream discharge likely influenced seasonal fluxes of aquatic invertebrate biomass in the benthos and drift. Aquatic insects dominated gut contents during this study; however, terrestrial prey were most common in the diet during the summer and fall. In the Pacific northwest, systematic removal of deciduous riparian vegetation to promote conifers may have unintended consequences on food resources of coastal cutthroat trout and aquatic food web interactions.

Oregon↗

USGS2000

Metal exposure in a benthic macroinvertebrate, Hydropsyche californica, related to mine drainage in the Sacramento River

A biomonitoring technique was employed to complement studies of metal transport in the upper Sacramento River affected by acid mine drainage. Metals (Al, Cd, Cu, Fe, Hg, Pb, and Zn) were determined in a resident invertebrate, Hydropsyche californica (Insecta: Trichoptera), and streambed sediments (<62 µm) to assess metal contamination within a 111-km section of the river downstream of the mining area. Metals in H. californica also were interpreted to be broadly indicative of metal exposure in fish. Total Hg was determined in the whole body of the insect, whereas Al, Cd, Cu, Fe, Pb, and Zn were additionally separated into operationally defined cytosolic (used as an indicator of exposure to bioavailable metal) and particulate fractions. Total concentrations of Cd, Cu, Hg, Pb, and Zn in sediments were consistent with documented upstream sources of acid mine drainage. Metal distribution patterns in H. californica and sediments were generally consistent for Cd, Cu, and Pb but inconsistent for Hg and Zn. Concentrations in H. californica indicated that bioavailable Cd, Cu, Pb, and Zn was transported at least 120 km downstream of the mine sources. Zinc in H. californica was elevated, but unlike sediments, did not decrease downstream. Mercury in H. californica was not elevated.

California↗

USGS2026

Detecting bumble bees in the wild using environmental DNA: Development and validation of a qPCR assay for the endangered Franklin’s bumble bee (Bombus franklini)

Environmental DNA (eDNA) sampling is a noninvasive alternative to conventional methods of surveying insects that may be particularly useful for detecting pollinators. We developed a quantitative polymerase chain reaction (qPCR) assay to detect the DNA of Franklin’s bumble bee ( Bombus franklini ) from flower samples and conducted an initial test of the assay using samples collected within and around the historical range of the species. We further analyzed all samples using metabarcoding. Our qPCR assay successfully amplified B. franklini DNA and exhibited no cross-reactivity with nontarget bumble bee DNA during in silico and in vitro testing. We did not detect B. franklini DNA from field-collected flower samples using either qPCR or metabarcoding. However, metabarcoding analysis revealed DNA of at least 16 other bumble bee species. This finding underscores the potential utility of eDNA sampling for surveying bumble bees. Nondetection of B. franklini from field-collected flower samples may be due to the extreme rarity of the species; B. franklini is endangered and has not been observed in the wild since 2006. Our B. franklini assay is among the first bee-specific qPCR assays ever developed and provides proof of concept for additional assays that may improve detection rates of rare and endangered bees.

California, Oregon↗

USGS2005

Occurrence and growth characteristics of Escherichia coli and enterococci within the accumulated fluid of the northern pitcher plant (Sarracenia purpurea L.)

Sarracenia purpurea L., a carnivorous bog plant (also known as the pitcher plant), represents an excellent model of a well-defined, self-contained ecosystem; the individual pitchers of the plant serve as a microhabitat for a variety of micro- and macro-organisms. Previously, fecal indicator bacteria ( Escherichia coli and enterococci) were shown as incidental contaminants in pitcher fluid; however, whether their occurrence in pitcher fluid is incidental or common has not been established. The purpose of this study was to investigate the occurrence, distribution, and growth potential of E. coli and enterococci in pitcher plant fluid from a protected bog in northwest Indiana. Escherichia coli and enterococci were recovered in pitcher fluids (n = 43 plants), with mean densities (log CFU mL -1 ) of 1.28 ± 0.23 and 1.97 ± 0.27, respectively. In vitro experiments showed that E. coli growth in fluid not containing insects or indigenous organisms was directly proportional to the fluid concentration (growth was 10-fold in 24 h in 100% fluid); however, in the presence of other indigenous organisms, E. col i and enterococci were only sustained for 5 days at 26 Â°C. Pulsed-field gel electrophoresis (PFGE) analysis showed that the plant Enterococcus faecalis isolates were genetically distinct from the human isolates; identical PFGE patterns were observed among plant isolates that fell into one of six clonal groups. These findings suggest that ( i ) E. coli and enterococci occurrence in pitcher plants is rather common in the bog studied, although their originating source is unclear, and ( ii ) the pitcher fluid contains adequate nutrients, especially carbon and energy sources, to promote the growth of indicator bacteria; however, under natural conditions, the biotic factors (e.g., competition for nutrients) may restrict their growth.

Canadian Journal of Microbiology↗

USGS2005

Assessment of calcium status in Maine forests: Review and future projection

Forest harvesting and acidic deposition can cause substantial decreases in the calcium (Ca) inventory of forest soils if such losses are not replenished through mineral weathering, atmospheric deposition, or fertilization. The net balance between losses and gains defines the forest Ca status. Site-specific studies have measured Ca pools and fluxes in Maine forests, but no synthesis has been published. In this paper, I review the literature on forest Ca and assess the current status and potential future trends. Forest soils in Maine are currently at lesser risk of Ca depletion compared with many forest soils in the central and southeastern United States, because levels of acidic deposition and rates of Ca accumulation in trees are lower in Maine. The rate of Ca accumulation in trees is reduced in Maine as a result of lower growth rates and a higher proportion of conifer trees that require less Ca than hardwoods. However, field-scale biogeochemical studies in Maine and New Hampshire, and regional estimates of harvest removals and soil inventories coupled with low weathering estimates, indicate that Ca depletion is a realistic concern in Maine. The synthesis of site-specific and regional data for Maine in conjunction with the depletion measured directly in surrounding areas indicates that the Ca status of many forest soils in Maine is likely declining. Ca status could decrease further in the future if forest growth rates increase in response to climate trends and recovery from insect-induced mortality and excessive harvesting in recent years. Proposed climate change induced reductions in spruce and fir and increases in hardwoods would also increase the risk of Ca depletion. ?? 2005 NRC.

Canadian Journal of Forest Research↗