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At least 577 records · Page 32Linked to original sources

Response of palila and other subalpine Hawaiian forest bird species to prolonged drought and habitat degradation by feral ungulates

Extinction has claimed half of all historically-known Hawaiian passerines, and today many extant species are increasingly threatened due to the combined effects of invasive species and climate change. Habitat disturbance has affected populations of feeding specialists most profoundly, and our results indicate that specialists continue to be most vulnerable, although even some abundant, introduced, generalist species also may be affected. Surveys of passerines during 1998–2011 in subalpine woodland habitat on Mauna Kea Volcano, Island of Hawai′i, revealed that the abundance of the critically endangered palila ( Loxioides bailleui ), a seed specialist, declined by 79% after 2003. The ′akiapōlā′au ( Hemignathus munroi ), an endangered specialist insectivore, was not detected in the survey area after 1998. The Hawai′i ′amakihi ( Hemignathus virens virens ), a generalist feeder and the most abundant species on Mauna Kea, was the only native species to maintain a stable population. The Japanese white-eye ( Zosterops japonicus ), a well-entrenched generalist and one of the three most common introduced species, declined. Drought prevailed in 74% of months during 2000–2011, and dry conditions contributed to the recent decline of the palila by reducing the annual māmane ( Sophora chrysophylla ) seed pod crop, which influences palila breeding and survival. Sustained browsing by introduced ungulates also lowered habitat carrying capacity, and their elimination should reduce the effects of drought and promote forest restoration. Our results illustrate how the feeding ecology of a species can influence its response to interacting environmental perturbations, and they underscore the value of long-term monitoring to detect population trends of sensitive species.

Hawai'i↗

Heatwave-induced synchrony within forage fish portfolio disrupts energy flow to top pelagic predators

During the Pacific marine heatwave of 2014–2016, abundance and quality of several key forage fish species in the Gulf of Alaska were simultaneously reduced throughout the system. Capelin ( Mallotus catervarius ), sand lance ( Ammodytes personatus ), and herring ( Clupea pallasii ) populations were at historically low levels, and within this community abrupt declines in portfolio effects identify trophic instability at the onset of the heatwave. Although compensatory changes in age‐structure, size, growth or energy content of forage fish were observed to varying degrees among all these forage fish, none were able to fully mitigate adverse impacts of the heatwave, which likely included both top‐down and bottom‐up forcing. Notably, changes to the demographic structure of forage fish suggested size‐selective removals typical of top‐down regulation. At the same time, zooplankton community structure may have driven bottom‐up regulation as copepod community structure shifted towards smaller, warm‐water species, and euphausiid biomass was reduced owing to the loss of cold‐water species. Mediated by these impacts on the forage fish community, an unprecedented disruption of the normal pelagic food web was signaled by higher trophic level disruptions during 2015–2016, when seabirds, marine mammals, and groundfish experienced shifts in distribution, mass mortalities, and reproductive failures. Unlike decadal‐scale variability underlying ecosystem regime shifts, the heatwave appeared to temporarily overwhelm the ability of the forage fish community to buffer against changes imposed by warm water anomalies, thereby eliminating any ecological advantages that may have accrued from having a suite of coexisting forage species with differing life history compensations.

Alaska↗

Conservation genomics in the sagebrush sea: Population divergence, demographic history, and local adaptation in sage-grouse (Centrocercus spp.)

Sage-grouse are two closely related iconic species of the North American West, with historically broad distributions across sagebrush-steppe habitat. Both species are dietary specialists on sagebrush during winter, with presumed adaptations to tolerate the high concentrations of toxic secondary metabolites that function as plant chemical defenses. Marked range contraction and declining population sizes since European settlement have motivated efforts to identify distinct population genetic variation, particularly that which might be associated with local genetic adaptation and dietary specialization of sage-grouse. We assembled a reference genome and performed whole-genome sequencing across sage-grouse from six populations, encompassing both species and including several populations on the periphery of the species ranges. Population genomic analyses reaffirmed genome-wide differentiation between greater and Gunnison sage-grouse, revealed pronounced intraspecific population structure, and highlighted important differentiation of a small isolated population of greater sage-grouse in the northwest of the range. Patterns of genome-wide differentiation were largely consistent with a hypothesized role of genetic drift due to limited gene flow among populations. Inferred ancient population demography suggested persistent declines in effective population sizes that have likely contributed to differentiation within and among species. Several genomic regions with SNPs exhibiting extreme population differentiation were associated with candidate genes linked to metabolism of xenobiotic compounds. In vitro activity of enzymes isolated from sage-grouse livers supported a role for these genes in detoxification of sagebrush, suggesting that the observed interpopulation variation may underlie important local dietary adaptations, warranting close consideration for conservation strategies that link sage-grouse to the chemistry of local sagebrush.

Genome Biology and Evolution↗

Hydrologic record extension of water-level data in the Everglades Depth Estimation Network (EDEN), 1991-99

The real-time Everglades Depth Estimation Network (EDEN) has been established to support a variety of scientific and water management purposes. The expansiveness of the Everglades, limited number of gaging stations, and extreme sensitivity of the ecosystem to small changes in water depth have created a need for accurate water-level and water-depth maps. The EDEN water-surface elevation model uses data from approximately 240 gages in the Everglades to create daily continuous interpolations of the water-surface elevation and water depth for the freshwater portion of the Everglades from 2000 to the present (2014). These maps provide hydrologic data previously unavailable for assessing biological and ecological studies. Ecologists working in the Everglades expressed a need to the EDEN project team for daily EDEN water-level surfaces from 1990 to 1999. The additional 10 years of surfaces will provide ecologists and resource managers with two decades (1991–2011) of surfaces to analyze hydrologic dynamics. Before 2000, many of the EDEN gages used to generate water surfaces were not in operation. These datasets were extended to provide estimations of hydrologic time-series histories. The general approach to the record extension (hindcasts) was to (1) create a database of available data from 1990 to the present; (2) use dynamic cluster analysis to group stations with similar hydrologic behaviors for subareas of the Everglades with a large number of stations; (3) use results from the cluster analysis to select candidate explanatory variables; (4) develop linear regression or artificial neural network models to extend water-level records; and (5) evaluate record extensions by using model performance statistics and comparison of water-surface maps for similar hydrologic conditions for the hindcasted period (1991–99) and measured period (2000–11). To hindcast and fill data records, 214 empirical models were developed—189 are linear regression models and 25 are artificial neural network models. The coefficient of determination (R 2 ) for 163 of the models is greater than 0.80 and the median percent model error (root mean square error divided by the range of the measured data) is 5 percent. To evaluate the performance of the hindcast models as a group, contour maps of modeled water-level surfaces at 2-centimeter (cm) intervals were generated using the hindcasted data. The 2-cm contour maps were examined for selected days to verify that water surfaces from the EDEN model are consistent with the input data. The biweekly 2-cm contour maps did show a higher number of issues during days in 1990 as compared to days after 1990. May 1990 had the lowest water levels in the Everglades of the 21-year dataset used for the hindcasting study. To hindcast these record low conditions in 1990, many of the hindcast models would require large extrapolations beyond the range of the predictive quality of the models. For these reasons, it was decided to limit the hindcasted data to the period January 1, 1991, to December 31, 1999. Overall, the hindcasted and gap-filled data are assumed to provide reasonable estimates of station-specific water-level data for an extended historical period to inform research and natural resource management in the Everglades.

Florida↗

Effects of 21st century climate, land use, and disturbances on ecosystem carbon balance in California

Terrestrial ecosystems are an important sink for atmospheric carbon dioxide (CO 2 ), sequestering ~30% of annual anthropogenic emissions and slowing the rise of atmospheric CO 2 . However, the future direction and magnitude of the land sink is highly uncertain. We examined how historical and projected changes in climate, land use, and ecosystem disturbances affect the carbon balance of terrestrial ecosystems in California over the period 2001–2100. We modeled 32 unique scenarios, spanning 4 land use and 2 radiative forcing scenarios as simulated by four global climate models. Between 2001 and 2015, carbon storage in California's terrestrial ecosystems declined by −188.4 Tg C, with a mean annual flux ranging from a source of −89.8 Tg C/year to a sink of 60.1 Tg C/year. The large variability in the magnitude of the state's carbon source/sink was primarily attributable to interannual variability in weather and climate, which affected the rate of carbon uptake in vegetation and the rate of ecosystem respiration. Under nearly all future scenarios, carbon storage in terrestrial ecosystems was projected to decline, with an average loss of −9.4% (−432.3 Tg C) by the year 2100 from current stocks. However, uncertainty in the magnitude of carbon loss was high, with individual scenario projections ranging from −916.2 to 121.2 Tg C and was largely driven by differences in future climate conditions projected by climate models. Moving from a high to a low radiative forcing scenario reduced net ecosystem carbon loss by 21% and when combined with reductions in land‐use change (i.e., moving from a high to a low land‐use scenario), net carbon losses were reduced by 55% on average. However, reconciling large uncertainties associated with the effect of increasing atmospheric CO 2 is needed to better constrain models used to establish baseline conditions from which ecosystem‐based climate mitigation strategies can be evaluated.

California↗

Modelling carbon responses of tundra ecosystems to historical and projected climate: A comparison of a plot- and a global-scale ecosystem model to identify process-based uncertainties

We are developing a process-based modelling approach to investigate how carbon (C) storage of tundra across the entire Arctic will respond to projected climate change. To implement the approach, the processes that are least understood, and thus have the most uncertainty, need to be identified and studied. In this paper, we identified a key uncertainty by comparing the responses of C storage in tussock tundra at one site between the simulations of two models - one a global-scale ecosystem model (Terrestrial Ecosystem Model, TEM) and one a plot-scale ecosystem model (General Ecosystem Model, GEM). The simulations spanned the historical period (1921-94) and the projected period (1995-2100). In the historical period, the model simulations of net primary production (NPP) differed in their sensitivity to variability in climate. However, the long-term changes in C storage were similar in both simulations, because the dynamics of heterotrophic respiration (RH) were similar in both models. In contrast, the responses of C storage in the two model simulations diverged during the projected period. In the GEM simulation for this period, increases in RH tracked increases in NPP, whereas in the TEM simulation increases in RH lagged increases in NPP. We were able to make the long-term C dynamics of the two simulations agree by parameterizing TEM to the fast soil C pools of GEM. We concluded that the differences between the long-term C dynamics of the two simulations lay in modelling the role of the recalcitrant soil C. These differences, which reflect an incomplete understanding of soil processes, lead to quite different projections of the response of pan-Arctic C storage to global change. For example, the reference parameterization of TEM resulted in an estimate of cumulative C storage of 2032 g C m-2 for moist tundra north of 50??N, which was substantially higher than the 463 g C m-2 estimated for a parameterization of fast soil C dynamics. This uncertainty in the depiction of the role of recalcitrant soil C in long-term ecosystem C dynamics resulted from our incomplete understanding of controls over C and N transformations in Arctic soils. Mechanistic studies of these issues are needed to improve our ability to model the response of Arctic ecosystems to global change.

Global Change Biology↗

Climate change as a long-term stressor for the fisheries of the Laurentian Great Lakes of North America

The Laurentian Great Lakes of North America provide valuable ecosystem services, including fisheries, to the surrounding population. Given the prevalence of other anthropogenic stressors that have historically affected the fisheries of the Great Lakes (e.g., eutrophication, invasive species, overfishing), climate change is often viewed as a long-term stressor and, subsequently, may not always be prioritized by managers and researchers. However, climate change has the potential to negatively affect fish and fisheries in the Great Lakes through its influence on habitat. In this paper, we (1) summarize projected changes in climate and fish habitat in the Great Lakes; (2) summarize fish responses to climate change in the Great Lakes; (3) describe key interactions between climate change and other stressors relevant to Great Lakes fish, and (4) summarize how climate change can be incorporated into fisheries management. In general, fish habitat is projected to be characterized by warmer temperatures throughout the water column, less ice cover, longer periods of stratification, and more frequent and widespread periods of bottom hypoxia in productive areas of the Great Lakes. Based solely on thermal habitat, fish populations theoretically could experience prolonged optimal growth environment within a changing climate, however, models that assess physical habitat influences at specific life stages convey a more complex picture. Looking at specific interactions with other stressors, climate change may exacerbate the negative impacts of both eutrophication and invasive species for fish habitat in the Great Lakes. Although expanding monitoring and research to consider climate change interactions with currently studied stressors, may offer managers the best opportunity to keep the valuable Great Lakes fisheries sustainable, this expansion is globally applicable for large lake ecosystem dealing with multiple stressors in the face of continued human-driven changes.

Great Lakes↗

Evaluating the piscicide rotenone as an option for eradication of invasive Mozambique tilapia in a Hawaiian brackish-water wetland complex

Mozambique tilapia Oreochromis mossambicus were recently discovered in ‘Aimakapā Fishpond, a 12-hectare brackish-water wetland complex in Kaloko-Honokōhau National Historical Park, on the Island of Hawai’i. As a possible eradication method, we evaluated rotenone, a natural piscicide used in fish management and the active ingredient in plants traditionally used by indigenous Hawaiians for capturing fish. To assess rotenone’s efficacy in killing tilapia and effects on non-target species, laboratory toxicity tests involved exposing organisms to various concentrations of liquid CFT Legumine (5% rotenone) in static trials of 48-h to 72-h duration. Test organisms included: Mozambique tilapia, non-native guppy Poecilia reticulata , the non-native odonate Rambur’s forktail Ischnura ramburii , native feeble shrimp Palaemon debilis , and native ‘ōpae’ula shrimp Halocaridina rubra . All organisms and water used in tests were obtained from ‘Aimakapā (12.6–12.7 ppt salinity), or, for H. rubra , an anchialine pool (15.0–15.2 ppt salinity). Survival analyses indicated CFT Legumine concentrations >3 ppm (>0.15 mg/L rotenone) achieved 100% mortality of tilapia and 93% of guppies within 24 h, with most tilapia killed by 6 h and most guppies by 2 h. Little or no mortality was observed among invertebrate exposed to 1 to 5 mg/L CFT Legumine: 0% mortality for ‘ōpae’ula shrimp, 4% for feeble shrimp; and 16% for odonate larvae. The 48 h LC50 values for Mozambique tilapia and guppy were 0.06 and 0.11 mg/L rotenone, respectively. Results demonstrate rotenone’s potential for non-native fish eradication in brackish-water habitats, with benefit of low mortality to certain macro-invertebrates. High rotenone tolerance displayed by ‘ōpae’ula shrimp is noteworthy. Invasive fish are common in anchialine pools, threatening existence of shrimp and other invertebrate fauna. Although rotenone’s effects on freshwater organisms have been well studied, our research represents one of only a few controlled laboratory experiments quantitatively assessing rotenone tolerance of brackish or marine fauna.

Hawaii↗

Cyclopoid and harpacticoid copepods of the Laurentian Great Lakes

Historical collections of cyclopoid and harpacticoid copepod crustaceans in the Great Lakes have mainly been based on samples taken with plankton nets in deeper waters (>5 m). Of the non-calanoid copepod species known from the Great Lakes, 58 or 64 live primarily on or in the sediments and rarely are collected in plankton samples. Because of their small size, they are rarely retained in the coarse sieves used to concentrate samples of benthic invertebrates. Thus, the abundance and distribution of most species of these two groups of copepods have never been adequately documented in the Great Lakes. We examined the stomach contents of small, bottom-feeding fishes such as slimy sculpin which feed on benthic copepods that live in deep, inaccessible rocky areas of the Great Lakes to collect some of the material. We also collected in shallow nearshore habitats, including wetlands. We present an annotated checklist of cyclopoid and harpacticoid copepods based on published records and our recent collections in the Great Lakes. We have added 14 species of cyclopoid copepods to the Great Lakes record, increasing the total to 30. Because we probably have accounted for most of the cyclopoid species, we provide a key to the identification of this group. We have added 19 species of harpacticoid copepods to the 15 previously known to the Great Lakes, and suspect that additional species remain to be discovered. In individual lakes, there were approximately as many species of cyclopoids as harpacticoids; the total number of species per lake ranged from 35 to 57. The most speciose genera were Bryocamptus (7), Canthocamptus (5), and Moraria (5) in the Harpacticoida, and Diacyclops (6) and Acanthocyclops (5) in the Cyclopoida. The origin of introduced species, our ability to classify copepod habitat, and the ecological significance of copepods are discussed.

Ohio Biological Survey Bulletin New Series↗

Pushing precipitation to the extremes in distributed experiments: Recommendations for simulating wet and dry years

Intensification of the global hydrological cycle, ranging from larger individual precipitation events to more extreme multiyear droughts, has the potential to cause widespread alterations in ecosystem structure and function. With evidence that the incidence of extreme precipitation years (defined statistically from historical precipitation records) is increasing, there is a clear need to identify ecosystems that are most vulnerable to these changes and understand why some ecosystems are more sensitive to extremes than others. To date, opportunistic studies of naturally occurring extreme precipitation years, combined with results from a relatively small number of experiments, have provided limited mechanistic understanding of differences in ecosystem sensitivity, suggesting that new approaches are needed. Coordinated distributed experiments (CDEs) arrayed across multiple ecosystem types and focused on water can enhance our understanding of differential ecosystem sensitivity to precipitation extremes, but there are many design challenges to overcome (e.g., cost, comparability, standardization). Here, we evaluate contemporary experimental approaches for manipulating precipitation under field conditions to inform the design of ‘Drought-Net’, a relatively low-cost CDE that simulates extreme precipitation years. A common method for imposing both dry and wet years is to alter each ambient precipitation event. We endorse this approach for imposing extreme precipitation years because it simultaneously alters other precipitation characteristics (i.e., event size) consistent with natural precipitation patterns. However, we do not advocate applying identical treatment levels at all sites – a common approach to standardization in CDEs. This is because precipitation variability varies >fivefold globally resulting in a wide range of ecosystem-specific thresholds for defining extreme precipitation years. For CDEs focused on precipitation extremes, treatments should be based on each site's past climatic characteristics. This approach, though not often used by ecologists, allows ecological responses to be directly compared across disparate ecosystems and climates, facilitating process-level understanding of ecosystem sensitivity to precipitation extremes.

Global Change Biology↗

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants and their effects on fish in the Mississippi River Basin

We collected, examined, and analyzed 1378 fish of 22 species from 47 sites in the Mississippi River basin (MRB) during 1995 and from a reference site in 1996. The sampling sites in the MRB represented National Contaminant Biomonitoring Program (NCBP) stations situated at key points on major rivers and National Water- Quality Assessment Program (NAWQA) stations located on lower-order rivers and streams in the Eastern Iowa Basins (EIB) and Mississippi Embayment (MSE) Study Units. The reference site was the water supply system of the USGS-Leetown Science Center in rural Jefferson County, WV. Common carp (Cyprinus carpio; carp) and black basses (Micropterus spp.; bass), the targeted species, together represented 82% of the fish collected. Each fish was examined in the field for externally and internally visible gross lesions, selected organs were weighed to compute various ponderal and organo-somatic indices, and selected tissues and fluids were obtained and preserved for analysis of biomarkers. Fish health indicators included splenic macrophage aggregates, lysozyme activity, and hispathological analysis of liver, kidney, and other tissues. Reproductive biomarkers included analysis of plasma concentrations of vitellogenin (vtg) and the sex steroid hormones 17-estradiol (E2) and 11-ketotestosterone (11- kt); and the histological determination of percent oocyte atresia (in female fish) and gonadal stage. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also measured. Composite samples of whole fish from each station were grouped by species and gender and analyzed for persistent organochlorine and elemental contaminants and for dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Organochlorine and inorganic contaminant concentrations in fish were generally low relative to historical levels at most sites, but remained present at concentrations representing threats to piscivorous wildlife in some locations. Toxaphene and DDT (mostly as p,p?-DDE) concentrations remained elevated in fish from the cottongrowing regions of the lower Mississippi valley, and were generally greater in the smaller streams draining agricultural areas (that is, in the MSE Study Unit) than at large river sites. Cyclodiene pesticide concentrations were also greatest in the EIB Study Unit and elsewhere in the corn-growing regions of the mid-MRB. Former point-sources of organochlorine pesticides also remained evident, especially in the Mississippi River near Memphis, TN. Consistent with previous findings, total PCB concentrations tended to be greatest (1-3 g/g) in the industrialized and urbanized Ohio River and Upper Mississippi sub-basins and at Memphis, TN, and were generally correlated with TCDD-EQ and EROD activity. Conversely, PCB concentrations were low (<0.1 g/g) in the more agricultural parts of the MRB. Concentrations of inorganic contaminants were also relatively low and stable or declining relative to past levels at most sites. Exceptions were Hg and Se; Hg concentrations were slightly elevated (>0.3 g/g) in bass from the Mississippi River at Memphis and several other sites and in carp from one MSE site. Concentrations of Se were also great enough to constitute a hazard to piscivorous wildlife (>0.6 g/g) at several MRB sites in the western parts of the MRB and were especially high (4-5 g/g) in fish from John Martin Reservoir, CO, where elevated concentrations were reported previously. Biomarker results indicated that fish from many stations had been exposed to contaminants, but at no sites did findings indicate exposure to high concentrations of toxic chemicals. Noteworthy among biomarker findings was that 73% of the male smallmouth bass (Micropterus dolomieui) from the Mississippi River at Lake City, MN (Lake Pepin) were intersex as indicated by the histological detection of ovotestes; and the combined EROD and H4IIE results indicated that fish from several rural sites in the

Mississippi River basin↗

The underlying causes of differential migration: Assumptions, hypotheses, and predictions

Mechanisms governing the migratory decisions of birds have long fascinated ecologists and sparked considerable debate. Identifying factors responsible for variation in migration distance, also known as differential migration, has been a popular approach to understanding the mechanisms underlying migratory behaviour more generally. However, research progress has been slowed by the continued testing of overlapping, non-mechanistic, and circular predictions among a small set of historically entrenched hypotheses. We highlight the body size hypothesis and suggest that the predictions commonly tested have impeded progress because body size relationships with migration distance are predictions made by several distinct hypotheses with contrasting mechanisms. The cost of migration itself has not been adequately accounted for in most hypotheses, and we propose two flight efficiency hypotheses with time- and energy-minimizing mechanisms that allow individuals to mitigate the risks inherent to longer migrations. We also advance two conceptual versions of the social dominance hypothesis based on two distinct underlying mechanisms related to distance minimization and food maximization that will help clarify the role of competition in driving migratory decisions. Overall, we describe and refine 12 mechanistic hypotheses proposed to explain differential migration (along with several other special-case hypotheses), seven of which have underlying mechanisms related to food limitation as past research has identified this to be an important driver of differential migration. We also thoroughly reviewed 145 publications to assess the amount of support for 10 critical assumptions underlying alternative hypotheses for differential migration in birds. Our review reveals that surprisingly few studies explicitly evaluate assumptions within a differential migration context. Generating and testing strong predictions and critical assumptions underlying mechanisms of alternative hypotheses will improve our ability to differentiate among these explanations of differential migration. Additionally, future intraspecific progress will be greatest if investigators continue to focus on mechanisms underlying variation in migration distance within rather than among demographic classes, as previous research has found differing mechanisms to be responsible for differential migration among demographic classes. Interspecifically, a thorough comparative analysis that seeks to explain variation in migration distance among species would broaden both our understanding of the mechanisms regulating current differential migration patterns and those that led to the evolution of migration more generally. Collectively, we provide a framework that, together with advances in animal-borne tracking and other technology, can be used to advance our understanding of the causes of differential migration distance, and migratory decisions more generally.

Biological Reviews↗

Southeast Regional Assessment Project for the National Climate Change and Wildlife Science Center, U.S. Geological Survey

The Southeastern United States spans a broad range of physiographic settings and maintains exceptionally high levels of faunal diversity. Unfortunately, many of these ecosystems are increasingly under threat due to rapid human development, and management agencies are increasingly aware of the potential effects that climate change will have on these ecosystems. Natural resource managers and conservation planners can be effective at preserving ecosystems in the face of these stressors only if they can adapt current conservation efforts to increase the overall resilience of the system. Climate change, in particular, challenges many of the basic assumptions used by conservation planners and managers. Previous conservation planning efforts identified and prioritized areas for conservation based on the current environmental conditions, such as habitat quality, and assumed that conditions in conservation lands would be largely controlled by management actions (including no action). Climate change, however, will likely alter important system drivers (temperature, precipitation, and sea-level rise) and make it difficult, if not impossible, to maintain recent historic conditions in conservation lands into the future. Climate change will also influence the future conservation potential of non-conservation lands, further complicating conservation planning. Therefore, there is a need to develop and adapt effective conservation strategies to cope with the effects of climate and landscape change on future environmental conditions. Congress recognized this important issue and authorized the U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center (NCCWSC; http://nccw.usgs.gov/) in the Fiscal Year 2008. The NCCWSC will produce science that will help resource management agencies anticipate and adapt to climate change impacts to fish, wildlife, and their habitats. With the release of Secretarial Order 3289 on September 14, 2009, the mandate of the NCCWSC was expanded to address climate change-related impacts on all Department of the Interior (DOI) resources. The NCCWSC will establish a network of eight DOI Regional Climate Science Centers (RCSCs) that will work with a variety of partners to provide natural resource managers with tools and information that will help them anticipate and adapt conservation planning and design for projected climate change. The forecasting products produced by the RCSCs will aid fish, wildlife, and land managers in designing suitable adaptive management approaches for their programs. The DOI also is developing Landscape Conservation Cooperatives (LCCs) as science and conservation action partnerships at subregional scales. The USGS is working with the Southeast Region of the U.S. Fish and Wildlife Service (FWS) to develop science collaboration between the future Southeast RCSC and future LCCs. The NCCWSC Southeast Regional Assessment Project (SERAP) will begin to develop regional downscaled climate models, land cover change models, regional ecological models, regional watershed models, and other science tools. Models and data produced by SERAP will be used in a collaborative process between the USGS, the FWS (LCCs), State and federal partners, nongovernmental organizations, and academia to produce science at appropriate scales to answer resource management questions. The SERAP will produce an assessment of climate change, and impacts on land cover, ecosystems, and priority species in the region. The predictive tools developed by the SERAP project team will allow end users to better understand potential impacts of climate change and sea level rise on terrestrial and aquatic populations in the Southeastern United States. The SERAP capitalizes on the integration of five existing projects: (1) the Multi-State Conservation Grants Program project "Designing Sustainable Landscapes," (2) the USGS multidisciplinary Science Thrust project "Water Availability for Ecological Needs," (3) the USGS Southeast Pilot Project "Climate Change in the Southeastern U.S. and its Impacts on Bird Distributions and Habitats," (4) a sea-level rise impacts study envisioned jointly with the National Oceanic and Atmospheric Administration (NOAA), and (5) two USGS sea-level rise impact assessment projects that address inundation hazards and provide probabilistic forecasts of coastal geomorphic change. The SERAP will expand on these existing projects and include the following tasks, which were initiated in summer 2009: * Regionally downscaled probabilistic climate-change projections * Integrated coastal assessment * Integrated terrestrial assessment * Multi-resolution assessment of potential climate change effects on biological resources: aquatic and hydrologic dynamics * Optimal conservation strategies to cope with climate change The SERAP seeks to formally integrate these tasks to aid conservation planning and design so that ecosystem management decisions can be optimized for providing desirable outcomes across a range of species and environments. The following chapters detail SERAP's efforts in providing a suite of regional climate, watershed, and landscape-change analyses and develop the interdisciplinary framework required for the biological planning phases of adaptive management and strategic conservation. The planning phase will include the identification of conservation alternatives, development of predictive models and decision support tools, and development of a template to address similar challenges and goals in other regions. The project teams will explore and develop ways to link the various ecological models arising from each component. The SERAP project team also will work closely with members of the LCCs and other partnerships throughout the life of the project to ensure that the objectives of the project meet resources mangers needs in the Southeast.

Open-File Report↗

Influence of lamprey rearing type on measures of performance

Declines in populations of Pacific Lamprey (Entosphenus tridentatus) have raised concerns by the Columbia River tribes, who then initiated efforts to protect and restore them throughout their historical range. The Columbia River Inter-Tribal Fish Commission (CRITFC) devised a restoration plan for lamprey in the Columbia River Basin which highlights the significance of lamprey to the tribes and recommends conservation actions. The plan calls for the development of artificial propagation (AP) protocols to provide fish for research (e.g., downstream passage studies) and restoration activities (e.g., supplemental releases into streams/rivers). The ideal outcome of these efforts would be cultured fish that are comparable to the corresponding wild fish, and efforts are underway to conduct such evaluations in larval and juvenile lamprey. The CRITFC lamprey restoration plan lists improving dam passage for juvenile and larval lamprey as a high priority action. Active telemetry techniques have not been an option until recently, when a prototype micro acoustic transmitter was designed for small, elongate fishes like lamprey and eels. Passage survival studies of juvenile and larval lamprey using acoustic telemetry are now possible but are challenged with the limited availability of research animals. The use of AP fish would facilitate passage survival studies, under the assumption that AP juvenile and larval lamprey perform and survive comparably to the wild lamprey they are intended to represent. The current study was enacted to add to the growing knowledge of how reliably AP lamprey can be used as surrogates for wild lamprey. Study objectives were to: 1) compare the swimming ability of AP and wild juvenile lamprey implanted with the prototype micro acoustic transmitter and 2) compare the performance of AP and wild larval lamprey by evaluating night activity levels, burrowing ability, and photokinetic response to tail illumination over a period of 5-months in a culture setting. Evaluations of juvenile lamprey sustained swimming performance did not reveal any differences between tagged and untagged lamprey of AP or wild origin. We standardized the stage of transformation for all tested lamprey to minimize variation. Our tests were constrained by limited access to juvenile lamprey, so significant differences between rearing types may have gone undetected. More information on how rearing type influences other lamprey life stages and swimming performance will add to the growing knowledge on how reliably AP lamprey can serve as surrogates for wild lamprey. We compared AP and wild larval lamprey using three performance metrics, both shortly after they arrived at our laboratory and through a 5-month study period. Within the AP and wild test groups, we divided lamprey into small (30-70 mm total length) and large (80-120 mm total length) size categories, forming four test groups. Each of the test groups were comprised of 25 lamprey and were held in separate tanks. These tanks were the source of test fish for all performance testing. Our results for 2 of 3 of the performance metrics showed no differences between rearing types, and we found limited evidence to suggest that duration in a culture setting changed performance. Night activity levels were low for all test groups. Burrowing times were significantly different by rearing type, with wild lamprey burrowing faster than AP lamprey, in both the small and large size categories. These significant differences in rearing type could be a concern for use of AP lamprey for restoration or research needs, but they may not be biologically meaningful. Both AP and wild lamprey completed burrowing in median times of less than 1 min, which minimizes concerns about predation risk. Additional opportunities to evaluate burrowing performance of AP and wild larval lamprey would be helpful to inform future planned uses of AP lamprey. Finally, our evaluations of photokinetic response to tail illumination revealed similar proportions of AP and wild larvae moving in response to illumination, and no significant differences in response time between the groups. The wild lamprey, however, consistently had faster (but not significantly) response times than AP fish. This finding supports the significantly faster burrowing times we observed for wild lamprey compared to AP fish. Taken together, these lines of evidence raise some concerns for the ability of AP lamprey to serve as defensible surrogates for wild lamprey because the ability to reliably burrow is so critical for larvae. Burrowing performance and photokinetic response to tail illumination were both easy to measure and will be valuable metrics for evaluating rearing types in future studies.

Report↗

California State Waters Map Series — Offshore of Fort Ross, California

Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California&rsquo;s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow subsurface geology. The Offshore of Fort Ross map area is located in northern California, on the Pacific coast of Sonoma County, about 90 km north of San Francisco and 60 km south of Point Arena. The onshore part of the map area is largely undeveloped, used primarily for grazing and recreation; the small town of Jenner (population, 136), located at the mouth of the Russian River, is the largest cultural center. The coast and shoreline are rugged and scenic, characterized by rocky promontories, kelp-rich coves, and nearshore rocks and sea stacks. U.S. Highway 1 extends along the coast through the map area, crossing the Russian River and passing through Sonoma Coast State Park and Fort Ross State Historic Park. The Offshore of Fort Ross map area is cut by the northwest-striking San Andreas Fault, the right-lateral transform boundary between the North American and Pacific plates. The fault intersects the shoreline a few kilometers south of Fort Ross at Timber Gulch, and it juxtaposes Jurassic, Cretaceous, Paleocene, and Eocene rocks of the Franciscan Complex to the northeast and Tertiary sedimentary rocks to the southwest. In this area, the San Andreas Fault has an estimated slip rate of 17 to 24 mm/yr. The devastating great 1906 California earthquake (M7.8) is thought to have nucleated on the San Andreas Fault offshore of San Francisco, about 90 km to the south, with the rupture extending northward through the Offshore of Fort Ross map area to the south flank of Cape Mendocino. Approximately 3.6 m of lateral offset occurred at Timber Gulch during this event. The San Andreas Fault has an important influence on coastal geomorphology. The coastline in the northern part of the map area, southwest of the onshore San Andreas Fault, is characterized by steep shoreline bluffs and as many as four uplifted, relatively flat marine terraces that range in elevation from about 15 to 100 m. Northeast of the San Andreas Fault, about 12 km of coastline is marked by steep, landslide-prone cliffs that commonly are 200 to 300 m high. The mouth of the Russian River and its estuary cut through the steep coastal topography in the southern part of the Offshore of Fort Ross map area. The Russian River drains a large watershed (3,470 km 2 ), and it has an annual discharge of about 2 km 3 (1,600,000 acre-feet) and an annual sediment load of about 900,000 metric tons. The map area is part of the Russian River littoral cell, in which the predominant longshore drift is to the south. Small pocket beaches are most common along the shoreline, but longer linear beaches are present near the mouth of the Russian River. The seafloor in the north half of the map area is characterized by rocky outcrops of Tertiary sedimentary rocks. The rugged nearshore zone and the inner shelf area (to water depths of about 50 m) typically slopes gently seaward, whereas the smooth midshelf area within California&rsquo;s State Waters (about 50 to 85 m deep) is relatively flat. In contrast, the nearshore to midshelf area in the south half of the map area, which lies directly offshore of the mouth of the Russian River, has a more uniform, relatively flat slope. Shallow-marine and shelf sediments were deposited in the last about 21,000 years during the sea-level rise that followed the Last Glacial Maximum (LGM). Sea level was about 125 m lower than present during the LGM, at which time the entire Offshore of Fort Ross map area was emergent and the shoreline was about 20 km west of its present location. Circulation over the continental shelf in the map area (and in the broader northern California region) is dominated by the southward-flowing California Current, the eastern limb of the North Pacific Gyre. Associated upwelling brings cool, nutrient-rich waters to the surface, resulting in high biological productivity. The current flow generally is southeastward during the spring and summer; however, during the fall and winter, the otherwise persistent northwest winds are sometimes weak or absent, causing the California Current to move farther offshore and the Davidson Current, a weaker, northward-flowing countercurrent, to become active. Throughout the year, this part of the northern California coast is exposed to four wave climate regimes: the north Pacific swell, the southern swell, northwest wind waves, and local wind waves. The north Pacific swell dominates in winter months (typically November through March). During summer months, the largest waves come from the southern swell, generated by storms in the south Pacific and offshore of Central America. Northwest wind waves affect the coast throughout the year, whereas local wind waves are most common from October to April. Potential marine benthic habitat types in the Offshore of Fort Ross map area include unconsolidated continental-shelf sediments, mixed continental-shelf substrate, and hard continental-shelf substrate. Rocky shelf outcrops and rubble are considered the primary habitat type for rockfish and lingcod, both of which are recreationally and commercially important species.

California↗

Mortality, movement and behaviour of native mussels during a planned water-level drawdown in the Upper Mississippi River

Managers in the Upper Mississippi River (UMR) are using reductions in the River's water levels during summer to mimic historical water regimes and rehabilitate habitats for vegetation and other species. Concerns for the unintended effects of these actions on mussel populations threatened to halt these projects. Our objective was to characterise the survival and movement of two mussel species in the UMR associated with a water level drawdown. During 2009 (no drawdown) and 2010 (0.3 m summer drawdown), we glued passive integrated transponder tags to 10 Amblema plicata and 10 Lampsilis cardium at each of 11 sites. Five sites were in shallow areas expected to be minimally affected by the drawdown (reference sites), and six sites were in shallow areas expected to be directly affected by the drawdown (treatment sites). About equal numbers of sites within both the reference and treatment areas had low and high slopes. Tagged mussels were randomly allocated across sites (within years). Recovery of tagged mussels was >88% in 2009 and 2010. Mortality was similar and low (mean, c . 5% in both species) among reference sites but was variable and relatively high (means, c . 27% in L. cardium and c . 52% in A. plicata ) among treatment sites; variation in mortality among treatment sites appeared related to slope. The study found evidence of drawdown associations with net horizontal movements in A. plicata but not L. cardium . Weekly horizontal movements in both species were significantly correlated with changes in water elevation. We observed significant slope associations related to the drawdown for mortality and net horizontal movement in A. plicata . There were strong species-specific differences in the effects of the drawdown on mortality, vertical movement and horizontal movement. These results suggest that A. plicata responded to the drawdown by vertical movement into the substratum, whereas L. cardium responded by horizontal movement to deeper water. No directionality of movement was observed in either species. Collectively, these data suggest that drawdowns can influence the mortality, movement and behaviour of mussels in the UMR. However, more information on spatial and temporal distributions of mussels is needed to better understand the magnitude of these effects. Results from this study are being used by resource managers to better evaluate the effects of this management tool on native mussel assemblages.

Minnesota, Wisconsin↗

Aquatic assessment of the Ely Copper Mine Superfund site, Vershire, Vermont

The Ely Mine, which operated from 1821 to 1905, and its area of downstream impact constitute the Ely Copper Mine Superfund site. The site was placed on the National Priorities List in 2001. The mine comprises underground workings, foundations from historical structures, several waste-rock piles, roast beds associated with the smelting operation, and slag piles resulting from the smelting. The mine site is drained by Ely Brook, which includes several tributaries, one of which drains a series of six ponds. Ely Brook empties into Schoolhouse Brook, which flows 3.3 kilometers and joins the Ompompanoosuc River. The aquatic ecosystem at the site was assessed using a variety of approaches that investigated surface-water quality, sediment quality, and various ecological indicators of stream-ecosystem health. The degradation of surface-water quality is dominated by copper with localized effects caused by iron, aluminum, cadmium, and zinc. Chronic water-quality criteria for copper are exceeded in the surface water of four of the six ponds on the Ely Brook tributary, and all of Ely Brook and Schoolhouse Brook, and of the Ompompanoosuc River downstream of the confluence with Schoolhouse Brook. Comparison of hardness-based and Biotic Ligand Model-based water-quality criteria for copper yields similar results with respect to extent of impairment. However, the Biotic Ligand Model criteria are mostly lower than the hardness-based criteria and thus suggest a greater degree of impairment, particularly in the Ely Brook watershed, where dissolved organic carbon concentrations and pH values are lower. Surface-water toxicity testing correlates strongly with the extent of impact. Likewise, riffle-habitat benthic invertebrate richness and abundance data support these results through the stream environment. Similarly, the index of biotic integrity for the fish community in Schoolhouse Brook and the Ompompanoosuc River document degraded habitats throughout Schoolhouse Brook from Ely Brook down to the Ompompanoosuc River. The sediment environment shows similar extents of impairment also dominated by copper, although localized degradation due to chromium, nickel, lead, and zinc was documented on the basis of probable effects concentrations. In contrast, equilibrium-partitioning sediment benchmarks indicate no toxic effects would be expected in sediments at the reference sites, and uncertain toxic effects throughout Ely Brook and Schoolhouse Brook, except for the reference sites and site EB-600M. The results for site EB-600M indicate predicted toxic effects. Acute toxicity testing of in situ pore waters using Hyalella azteca indicates severe impacts in Ely Brook reaching 100 percent lethality at site EB-90M. Acute toxicity testing of in situ pore waters using Chironomus dilutus shows similar, but not as severe, toxicity. Neither set of in situ pore-water toxicity tests showed significant impairment in Schoolhouse Brook or the Ompompanoosuc River. Chronic sediment toxicity testing using Hyalella azteca indicated significant toxicity in Ely Brook, except at site EB-90M, and in Schoolhouse Brook. The low toxicity of EB-90M may be a reflection of the low lability of copper in that sediment as indicated by a low proportion of extractable copper (1.1 percent). Depositional-targeted habitat invertebrate richness and abundance data support these conclusions for the entire watershed, as do the index of biotic integrity data from the fish community. The information was used to develop an overall assessment of the impact on the aquatic system that appears to be a result of the acid rock drainage at the Ely Mine. More than 700 meters of Ely Brook, including two of the six ponds, were found to be severely impacted, on the basis of water-quality data and biological assessments. The reference location was of good quality based on the water quality and biological assessment. More than 3,125 meters of Schoolhouse Brook are also severely impacted, on the basis of water-quality data and biological assessments. The biological community begins to recover near the confluence with the Ompompanoosuc River. The evidence is less conclusive regarding the Ompompanoosuc River. The sediment data suggest that the sediments could be a source of toxicity in Ely Brook and Schoolhouse Brook. The surface-water assessment is consistent with the outcome of a surface-water toxicity testing program performed by the U.S. Environmental Protection Agency for Ely Brook and Schoolhouse Brook and a surface-water toxicity testing program and in situ amphibian testing program for the ponds.

Vermont↗

Resurvey of quality of surface water and bottom material of the Barataria Preserve of Jean Lafitte National Historical Park and Preserve, Louisiana, 1999-2000

The quality of water and bottom material in the Barataria Preserve of Jean Lafitte National Historical Park and Preserve, Louisiana, was surveyed from March 1999 to May 2000. Organochlorine, chlorophenoxy acid, and organophosphorus pesticides; polychlorinated biphenyls (PCB's); and trace elements were analyzed in surface water and bottom material from three sites previously sampled in a 1981-82 survey. Surface water at six sites was sampled and analyzed for selected nutrients and major inorganic ions based on their importance to human health, the health of the marshes of the Barataria Preserve, or their usefulness in tracking the circulation of Mississippi River water in the Barataria Preserve. Southern Louisiana was in a moderate to severe drought during most of the sampling period, which elevated salinity in the Barataria Preserve for at least 8 months. Specific conductance values were less than 3,000 µS/cm (microsiemens per centimeter at 25 degrees Celsius) in surface water throughout the Barataria Preserve from March through September 1999. Specific conductance values increased over the next 2 months and then remained between 5,000 and 6,000 µS/cm. The herbicide 2,4-D was detected in water at the two sites sampled in August 1999 but not at any site during the two other sampling times. Iron, manganese, and the trace elements copper, nickel, and zinc were detected in dissolved and whole-water samples at all three sites. Nitrite+ nitrate, as nitrogen, concentrations ranged from less than 0.002 to 0.19 mg/L (milligrams per liter). Ammonia, as nitrogen, concentrations ranged from less than 0.01 to 0.16 mg/L. Orthophosphate, as phosphorus, concentrations ranged from less than 0.002 to 0.14 mg/L. Calcium, magnesium, potassium, sulfate, and chloride concentrations in surface water were elevated due to the marine influence on the composition of surface water in the Barataria Preserve during the sampling period. Sulfate and chloride concentrations reached 379 and 2,830 mg/L, respectively. Polychlorinated biphenyls, chlordane, and DDT were detected in bottom material. Trace elements were detected in bottom material at all three of the sampled sites. Arsenic concentrations ranged from 4 to 9 µg/g (micrograms per gram) and lead concentrations from 20 to 31 µg/g. Mercury concentrations also were above laboratory reporting levels (LRL's) for bottom material at all three sites. The herbicide 2,4-D was detected in surface water during both surveys. Other organic compounds were not detected in surface water. Mercury and chromium were detected in surface water at all three sites during the 1981-82 survey but were below LRL?s during the 1999-2000 survey. Changes in chemical characteristics of bottom material occurred during the years between the 1981-82 and 1999-2000 surveys. DDT decreased in the bottom material at Bayou Segnette near Barataria. DDE, a degradation product, increased at this site, indicating that over time, DDT concentrations are decreasing in bottom material. PCB's were present in similar concentrations (Bayou Segnette near Barataria) or increased (Bayou Segnette 4.6 miles below Westwego) from 1981-82 to 1999-2000. Cadmium concentrations consistently decreased by half or more at all three sites from 1981-82 to 1999-2000. Mercury concentrations were consistently lower at all three sites in the 1999-2000 survey, but the differences from the 1981-82 survey were small. Chromium concentrations increased at two of the three sites from 1981-82 to the present survey. At the third site, no chromium value was available for the earlier survey. Concentrations of copper and nickel increased in bottom material at the two sites on Bayou Segnette, but decreased at Kenta Canal northwest of Westwego. Probable Effects Levels (PEL's) and Interim Sediment Quality Guidelines (ISQG's) concentrations, as tabulated by the Canadian Council of Ministers of the of the Environment, were used to assess the probability of biological impairment in the Barataria Preserve. PEL’s are concentrations of a chemical at or above which some biological impairment is likely. ISQG concentrations are those at or below which biological impairment is unlikely. Concentrations of 2,4-D and trace elements, when detected in surface water, were substantially lower than levels at which biological impairment could be expected. Concentrations of organic compounds in bottom material were at most less than 25 percent of PEL’s, and usually much lower. Arsenic, cadmium, copper, and lead concentrations in bottom material were generally slightly above or lower than ISQG concentrations in both surveys, although arsenic was as high as 53 percent of PEL’s at one site in the 1999-2000 survey. All other trace elements in bottom material were present in concentrations lower than ISQG concentrations.

Louisiana↗