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At least 577 records · Page 32Linked to original sources

Nonlinear response of trout abundance to summer stream temperatures across a thermally diverse montane landscape

Stream temperature is a fundamental physical factor that affects the distribution and abundance of salmonids, but empirical inconsistencies exist regarding the nature of this relationship in wild populations. We sampled trout populations composed primarily of cutthroat trout Oncorhynchus clarki but also including brown trout Salmo trutta and brook trout Salvelinus fontinalis at 102 reaches on 24 first- to fourth-order streams across a thermally diverse montane landscape. Curves fit to scatterplots of density and biomass versus mean July-August stream temperatures suggested nonlinear, dome-shaped responses. Peaks occurred near mean stream temperatures of 12??C; x-intercepts were near 3??C and 21??C. We conclude that inconsistencies in previously reported temperature-abundance relationships for wild trout populations may have resulted from sampling only a subset of the thermal environments occupied by a species. Researchers analyzing this relationship should be cognizant of the range of temperatures studied and the expected form of the relationship over that range.

Transactions of the American Fisheries Society↗

Water-surface elevations and channel characteristics for selected reaches of the Rogue River and Elk Creek, Jackson and Josephine Counties, Oregon

The central Rogue River valley, because of its mild climate, fertile soil, scenic attractions, and sport-fishery resource, has great potential for future population growth and industrial development. As the population grows and the area develops, zoning becomes necessary to assure the most beneficial use of the land, especially of the flood plains. To establish land-use zones on the flood plains, the area subject to inundation and elevation of floods must be considered. Areas flooded during the December 1964 flood and the approximate limits of the 1861 flood in Jackson and Josephine Counties are shown in two interim reports (Corps of Engineers, 1965); however, there are no published flood-elevation profiles to use as a basis for establishing meaningful land-use-zone boundaries or for delineating inundated areas of other floods.

Oregon↗

Age, growth rates, and paleoclimate studies of deep sea corals

Deep-water corals are some of the slowest growing, longest-lived skeletal accreting marine organisms. These habitat-forming species support diverse faunal assemblages that include commercially and ecologically important organisms. Therefore, effective management and conservation strategies for deep-sea corals can be informed by precise and accurate age, growth rate, and lifespan characteristics for proper assessment of vulnerability and recovery from perturbations. This is especially true for the small number of commercially valuable, and potentially endangered, species that are part of the black and precious coral fisheries (Tsounis et al. 2010). In addition to evaluating time scales of recovery from disturbance or exploitation, accurate age and growth estimates are essential for understanding the life history and ecology of these habitat-forming corals. Given that longevity is a key factor for population maintenance and fishery sustainability, partly due to limited and complex genetic flow among coral populations separated by great distances, accurate age structure for these deep-sea coral communities is essential for proper, long-term resource management.

Report↗

Society’s struggle with unwanted species: What centuries of history reveal about species bounty programs

Species bounty programs, much like bounty hunters charged to bring fugitives to justice, enlist the public to locate and remove unwanted species through financial incentives. With the goal of reducing population sizes, these programs address perceived ecological and economic damage caused by target species. In this study, we provide the first global assessment of species bounty programs, drawing on evidence from both historical and contemporary efforts across diverse regions and cultural contexts over the past eight centuries. We uncovered a long history of bounty programs involving at least 283 species—mammals, birds, fish, plants, reptiles, mollusks, insects, amphibians, and crustaceans—across 449 programs in 60 countries. Using this collective knowledge, we offer five perspectives on species bounty programs. First, bounty programs are launched for a variety of reasons, including economic (livestock, crops, fisheries, infrastructure), ecological (species, ecosystems), and social (human health) considerations related to unwanted species. Second, bounty programs vary in their design and implementation, ranging from well-planned operations with clear management and conservation objectives to ad hoc operations with limited articulation and investigation of project outcomes. Third, evidence points to unintended consequences, in which bounty programs result in the incidental removal of non-target species or in effects that may inadvertently benefit target species. Fourth, while not always the case, fraudulent activities have been reported, compromising the management outcomes of some programs. Fifth, public perception of bounty programs is highly dynamic and ensuring program engagement remains a persistent challenge. By reviewing the scattered narratives of past and present bounty programs globally, this review seeks to inform the evolving role of this management strategy.

npj Biodiversity↗

Effects of air exposure during simulated catch-and-release angling on survival and fitness of Yellowstone Cutthroat Trout

Concerns have been raised regarding the practice of exposing fish to air during catch-and-release (C&R) angling. The purpose of this study was to evaluate the effects of air exposure on short- and long-term survival and progeny production of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri . Prespawn adults were sampled at a weir during upstream migration in 2016 and 2017, exposed to a simulated angling event of 102 s, and then exposed to air for a randomly selected duration of 0, 30, or 60 s. An additional control group was added during 2017 in which fish were not exposed to simulated angling or air. In total, 1,519 fish were sampled in 2016, and 744 fish were sampled in 2017. Additionally, age-0 fish (2016: n = 2,924; 2017: n = 1,492) were collected to evaluate the effects of air exposure on the production of progeny. No effect of angling itself or of angling and air exposure was observed on short-term (≤60 d posttreatment) or long-term (>1 year posttreatment) survival of adults, with one exception. During 2016, fish that had been air exposed for 60 s had a statistically higher short-term survival rate than fish that received no air exposure. Air exposure had no effect on the proportion of fish that successfully spawned. Regression analysis revealed that neither angling nor air exposure affected progeny production. Considering that much of the literature, as well as this study, reports little to no influence of air exposure on salmonid mortality or reproductive success, it seems highly unlikely that air exposure of less than 60 s during C&R angling would have negative population-level effects.

Idaho↗

The geography and geology of Alaska; a summary of existing knowledge, with a section on climate, and a topographic map and description thereof

Alaska, the largest outlying possession of the United States, is that great land mass forming the northwestern extremity of the North American continent, whose western point is within 60 miles of the Asiatic coast (PI. II). About one-quarter of this area lies within the Arctic Circle, and from the standpoint of geographic position must be regarded as an arctic province; but the southern seaboard, exposed to the warm winds and waters of the Pacific, gives to the entire southern portion of the territory" a comparatively warm climate. It is not generally realized that the range of climate in Alaska is greater than that between Florida and Maine. At the southernmost point of the Pacific coast the mean annual temperature is not far from that of the city of Washington, the winters being warmer and characterized by less snowfall; the Yukon Valley on the other hand has a winter climate similar to that of northern Montana and Dakota; while in the extreme northern part of the territory the meteorologic conditions are invariably arctic. Though as yet only sparsely settled, Alaska's vast area and great resources make it one of the most important possessions of the United States and promise its rapid development. During the years 1890 to 1900 the population increased from 32,052* to 63,592. The mineral output, which in 1890 was valued at less than $800,000, exceeded $9,000,000 in 1904, and the fisheries show a corresponding growth. This rapid development has attracted public attention and led to urgent demand for explorations, surveys, and other investigations. So actively has this work been pushed, both by public and private enterprise, that exact knowledge of the geography, geology, and mineral resources of the interior has made greater strides within the last eight years than during the preceding thirty-one years since the acquisition of Alaska. The facts regarding the geography and geology, scattered as they are through the many books and reports of this period, are not always readily accessible, and the time seems ripe to present them in a summarized form. The topography of Alaska is varied and complex (see PI. I), and it is not easy to present briefly even the salient features. The limited number of pages here devoted to the subject precludes the possibility of detailed treatment, even if the facts were available. Much of the description has been taken from the results attained by other investigators, the writer being personally familiar with only a part of this large province. A list of the publications consulted is appended. The larger geographic features of Alaska are now fairly well known, though the detailed surveys which are demanded by the development of many localities have hardly been begun. Preliminary surveys have been completed of all but three 8 of the larger rivers. The most important mountain ranges have been at least outlined (fig. 3). Only three large areas remain almost entirely unmapped: One in southwestern Alaska, between Cook Inlet and the lower Kuskokwim, and the others in northern Alaska, embracing the Arctic watershed east and west of the Colville River. Nearly all the surveys of the interior, however, have been of a preliminary and exploratory character, and to meet the requirements of exact geography must be followed by more detailed mensuration. Though the coast line has been fairly well known for more than half a century, knowledge of the interior has been gained chiefly within the last two decades. This has not yet found its way into text-books and has too often been entirely ignored by cartographers. If facts are presented which may seem elementary, it is because even well-informed people have been known to harbor misconceptions in regard to the orographic features, climate, and general character of Alaska. Those who read of the perils and privations of winter travel and explorations are apt to picture a region of ice and snow; others, again, who have personal knowledge of the tourist route of southeastern Alaska, regard the whole district as one of rugged mountains and glaciers. In point of fact, glaciers are now nearly limited to the ranges bordering the Pacific and to the two slopes of the Alaska range; and even during the greatest development of glaciers but a small portion of Alaska was under ice (see map, PI. XXII). As a treatise on geography would hardly be complete without some discussion of the climate, meteorologic data have been compiled by Mr. Cleveland Abbe, jr., but the discussion of this does not pretend to be more than a cursory treatment of the subject. The scope of the paper seems to require also a brief summary of the development of geographic knowledge of Alaska. This subject, with its many ramifications, is of fascinating interest and offers a magnificent field for the trained historian. If the accompanying sketch of discovery and exploration awakens any measure of popular interest the writer will feel amply rewarded for having attacked a theme which hardly falls within the scope of his investigations. When this compilation was begun it was intended to be chiefly a description of the topography of Alaska, as illustrated by the accompanying map (PI. XXXIV, in pocket), which was compiled under the direction of the late R. U. Goode. In the course of the work there accumulated much geologic as well as geographic material which seemed worthy of inclusion in the report. As no comprehensive statement of the geology of Alaska has been made since the modern epoch of investigation was begun, an attempt will be made to give a summary of all results achieved. Since the writer has obtained much of his knowledge of the facts from the work of others, he disclaims any pretense of making an entirely original contribution to geologic science. He feels, however, that a personal familiarity with a considerable part of the province, gained during seven consecutive seasons of field work, will justify Mm in presenting conclusions which may in some cases be at variance with those in the reports on which he must draw for his facts. Throughout this report attempt will be made to credit borrowed material to the source from which it is drawn. Where such matter has been obtained entirely from published reports there is no difficulty in so doing; but as regards investigators of the Geological Survey, with whom the writer has collaborated both in field and in office, the case is somewhat different, for it is not always possible to know whether this or that theory originated with the writer or with one of his colleagues. It will, then, perhaps suffice to state that this report could not have been prepared without the explorations and researches of the geologists, F. C. Schrader, Walter C. Mendenhall, Arthur J. Collier, J. E. Spurr, and Arthur C. Spencer; and the surveys of the topographers, T. G. Gerdine, D. C. Witherspoon, D. L. Reaburn, W. J. Peters, and E. C. Barnard. Each of these men, in the course of from two to six years of field work, has made important contributions to the knowledge of the geography and geology of Alaska, and not all of these results have yet been put in print. In the last season (1903) L. M. Prindle, C. W. Wright, Arthur Hollick, G. C. Martin, F. L. Hess, and Fred H. Moffit have carried on geologic work in Alaska, and the writer has made use of their work now in course of publication. He has also been fortunate in having access to the manuscript reports of Walter C. Mendenhall and F. C. Schrader on the Copper River basin, to which references will be made. The matter here presented should be credited in a measure to all of these investigators, but for many of the theories advanced the writer alone is responsible. As this manuscript goes to press there has been opportunity to incorporate some of the results of the field work of 1904. As far as possible these have been embodied in the text, but in some instances it has been found advisable to add them only as footnotes. During the past summer F. E. and C. W. Wright extended the geologic reconnaissance in southeastern Alaska. In southwestern Alaska G. C. Martin and T. W. Stanton have determined the general Mesozoic section, while F. H. Moffit has made a reconnaissance of the northern part of the Kenai Peninsula. A. J. Collier has mapped the geology of the Cape Lisburne region, and L. M. Prindle and F. L. Hess have made contributions to the knowledge of the metamorphic terranes of the Yukon-Tanana district. It is the writer's purpose to describe in nontechnical language the larger geographic features and discuss their relation as far as the data available will permit. In the treatment of the geology, however, less effort will be made to make the matter acceptable to the lay reader. It is hoped, however, that a brief summary of the salient features of the geologic history' may be not without interest to the general public. If this paper serves in some measure to dispel the popular fallacies regarding Alaska and to disseminate more accurate knowledge of its geographic and geologic features, the purpose of its publication will be accomplished.

Alaska↗

Alaska

Key Messages Arctic summer sea ice is receding faster than previously projected and is expected to virtually disappear before mid-century. This is altering marine ecosystems and leading to greater ship access, offshore development opportunity, and increased community vulnerability to coastal erosion. Most glaciers in Alaska and British Columbia are shrinking substantially. This trend is expected to continue and has implications for hydropower production, ocean circulation patterns, fisheries, and global sea level rise. Permafrost temperatures in Alaska are rising, a thawing trend that is expected to continue, causing multiple vulnerabilities through drier landscapes, more wildfire, altered wildlife habitat, increased cost of maintaining infrastructure, and the release of heat-trapping gases that increase climate warming. Current and projected increases in Alaska’s ocean temperatures and changes in ocean chemistry are expected to alter the distribution and productivity of Alaska’s marine fisheries, which lead the U.S. in commercial value. The cumulative effects of climate change in Alaska strongly affect Native communities, which are highly vulnerable to these rapid changes but have a deep cultural history of adapting to change.

Alaska↗

USGS Nonindigenous Aquatic Species database with a focus on the introduced fishes of the lower Tennessee and Cumberland drainages

The Nonindigenous Aquatic Species (NAS) database (http://nas.er.usgs.gov) functions as a national repository and clearinghouse for occurrence data for introduced species within the United States. Included is locality information on over 1,100 species of vertebrates, invertebrates, and vascular plants introduced as early as 1850. Taxa include foreign (exotic) species and species native to North America that have been transported outside of their natural range. Locality data are obtained from published and unpublished literature, state, federal and local monitoring programs, museum accessions, on-line databases, websites, professional communications and on-line reporting forms. The NAS web site provides immediate access to new occurrence records through a real-time interface with the NAS database. Visitors to the web site are presented with a set of pre-defined queries that generate lists of species according to state or hydrologic basin of interest. Fact sheets, distribution maps, and information on new occurrences are updated as new records and information become available. The NAS database allows resource managers to learn of new introductions reported in their region or nearby regions, improving response time. Conversely, managers are encouraged to report their observations of new occurrences to the NAS database so information can be disseminated to other managers, researchers, and the public. In May 2004, the NAS database incorporated an Alert System to notify registered users of new introductions as part of a national early detection/rapid response system. Users can register to receive alerts based on geographic or taxonomic criteria. The NAS database was used to identify 23 fish species introduced into the lower Tennessee and Cumberland drainages. Most of these are sport fish stocked to support fisheries, but the list also includes accidental and illegal introductions such as Asian Carps, clupeids, various species popular in the aquarium trade, and Atlantic Needlefish ( Strongylura marina ) that was introduced via the newly-constructed Tennessee-Tombigbee Canal.

Cumberland River;Tennessee River↗

Relationship between reported commercial landings and abundance of young striped bass in Chesapeake Bay, Maryland

The ability to predict subsequent landings of striped bass Morone saxatilis from the indices of abundance of juveniles (young of the year) determined annually by the Maryland Department of Natural Resources was evaluated by multiple‐regression techniques. About 57% of the variation in reported landings could be accounted for by the juvenile indices 2, 3, 4, and 5 years prior to the year of the landings for the period 1959–1983. Elimination of the first 4 years of record (1959–1962) increased the R 2 to 0.83. The regressions of reported landings on the indices of ages 2–5 striped bass for the periods 1964–1973 and 1974–1983 indicated that mortality in the fishable stock increased between the two periods. These results support the use of the juvenile indices for monitoring recruitment into the population and as a basis for management decisions.

Maryland↗

First record predation on white sturgeon eggs by sympatric fishes

We report the occurrence of white sturgeon Acipenser transmontanus eggs in guts of four species of fish from the Columbia River. Three of the species—northern squawfish Ptychocheilus oregonensis , largescale sucker Catostomus macrocheilus , and prickly sentpin Cottus asper —are native to the river and one, common carp Cvprinus carpio , is exotic.

Oregon, Washington↗

Upstream movements of Atlantic Salmon in the Lower Penobscot River, Maine following two dam removals and fish passage modifications

The Penobscot River Restoration Project (PRRP), to be completed in 2016, involved an extensive plan of dam removal, increases in hydroelectric capacity, and fish passage modifications to increase habitat access for diadromous species. As part of the PRRP, Great Works and Veazie dams were removed, making Milford Dam the first impediment to federally endangered Atlantic Salmon Salmo salar . Upstream habitat access for Atlantic Salmon is dependent upon successful and timely passage at Milford Dam because nearly all suitable spawning habitat is located upstream. In 2014 and 2015, a total of 73 adult salmon were radio-tagged to track their upstream movements through the Penobscot River to assess potential delays at (1) the dam remnants, (2) the confluence of the Stillwater Branch and the main stem of the Penobscot River below the impassable Orono Dam, and (3) the Milford Dam fish lift (installed in 2014). Movement rates through the dam remnants and the Stillwater confluence were comparable to open river reaches. Passage efficiency of the fish lift was high in both years (95% and 100%). However, fish experienced long delays at Milford Dam, with approximately one-third of fish taking more than a week to pass in each year, well below the Federal Energy Regulatory Commission passage standard of 95% within 48 h. Telemetry indicates most fish locate the fishway entrance within 5 h of arrival and were observed at the entrance at all hours of the day. These data indicate that overall transit times through the lower river were comparable to reported movement rates prior to changes to the Penobscot River due to the substantial delays seen at Milford Dam. The results of this study show that while adult Atlantic Salmon locate the new fish lift entrance quickly, passage of these fish was significantly delayed under 2014–2015 operations.

Maine↗

Virus diseases of fish

Viruses are probably the cause of a wide spectrum of fish diseases. Although relatively few virus diseases of fish are known today, some of the diseases of unknown etiology, as well as some diseases presently accepted as due to bacteria, protozoa, fungi or nutritional deficiencies, possibly will be recognized eventually as virus diseases. Some viruses may induce proliferative tissue changes whereas others may cause degenerative change. Although several diseases of a proliferative nature have been reported to be of virus origin, positive experimental evidence for the transmission of a virus from one fish to another, has been presented for only lymphocystis. The degenerative or non-neoplastic diseases of possible virus origin give the fish-culturist the most concern because of the severe mortalities resulting from infection. Epizootics of this nature have been reported in carp (Cyprinus carpio) and rainbow trout (Salmo gairdneri) in Europe, in acara (Geophagus brasiliensis) in South America, in kokanee, (Oncorhynchus nerka kennerlyi) and in sockeye salmon (Oncorhynchus nerka nerka) in the State of Washington. It has been demonstrated that each epizootic was caused by an infectious filterable agent, probably a virus.

Transactions of the American Fisheries Society↗

Habitat suitability index curves for paddlefish, developed by the delphi technique

A Delphi exercise conducted with a panel of 11 experts on paddlefish (Polyodon spathula) and an evaluator resulted in 14 riverine habitat suitability index curves associating various life stages or activities of paddlefish with four variables: velocity, depth, substrate type, and temperature. The panel reached a consensus on six of the curves and eight to 10 panelists agreed on the others. Several panelists reported that they found the Delphi exercise to be a good learning experience, and they believed the technique is an appropriate interim method for developing suitability index curves when available data are inadequate for more conventional statistical analyses. Documentation of good paddlefish spawning habitat was the data need most commonly identified by the panelists.

North American Journal of Fisheries Management↗

Working group on American Eel (WGAMEEL; outputs from 2024 meeting)

The Working Group on American Eel (WGAMEEL) met virtually three times in 2022-2024 to address the five Terms of Reference (ToRs) of its three-year term. The first two ToRs tasked WGAMEEL with listing and evaluating data on American eel landings, abundance indices, and spatial and habitat data and also to describe assessment methods used in Canada and the US. Canada-wide American eel trajectory was estimated using 12 fishery-independent datasets. Generally, longer datasets had more negative trends than shorter ones. Limiting data to the post-2000 years produced fewer negative trends that did not differ from zero, suggesting the observed declines occurred pre-2000. Spatial modelling for American eel requires knowledge and mapping that covers the breadth of habitat types occupied by the species, including freshwater, estuarine, and marine environments. In recent years there has been an expansion of online databases with data from the aquatic environment, particularly in freshwater, with estuarine and marine data less consistently documented. This report broadly compiles abiotic data series of relevance to American eel. A larger challenge for spatial modelling will be acquiring enough high quality, georeferenced biological data sets with suitable observations to assess occurrence, abundance, and trends over time in a spatial framework. The third ToR considered Indigenous Knowledge Systems for American eel. A survey reaching First Nations representatives from four Canadian provinces confirmed the cultural importance of eels in Indigenous communities, and that Indigenous knowledge possessed by the participant groups are place-based and contextual, especially regarding threats impacting eels. The final two ToRs focused on identifying stock assessment modelling approaches applicable to American and European eel, and assessing whether any of these approaches might be appropriate for American eel management moving forward. WGAMEEL evaluated the various approaches for assessing American eel or providing management advice. Two approaches that could be completed in the next few years because of their minimal data needs are index-based methods and catch-only method. A suite of approaches considered by WGAMEEL that would take more time and data were spatial or habitat models, management strategy evaluation, and spawner-per-recruit (SPR) models potentially paired with meta-population models.

ICES Scientific Reports↗

Unique characteristics of the trachea of the juvenile leatherback turtle facilitate feeding, diving and endothermy

The adult leatherback turtle Dermochelys coriacea overlaps in body size (300–500 kg) with many marine mammals, yet develops from a 50 g hatchling. Adults can dive deeper than 1200 m and have core body temperatures of 25 °C; hatchlings are near-surface dwellers. Juvenile leatherbacks have rarely been studied; here we present anatomical information for the upper respiratory tract of 3 turtles (66.7–83.0 cm straight carapace length; 33.2–53.4 kg body mass) incidentally captured by long-line fisheries. Combined with existing information from adults and hatchlings, our data show that there is an ontogenic shift in tracheal structure, with cartilaginous rings becoming broader and eventually fusing anteriorly. This ontogenic shift during independent existence is unique among extant deep-diving air breathing vertebrates. Tract wall thickness is graded, becoming progressively thinner from larynx to bronchi. In addition, cross-sectional shape becomes increasingly dorsoventrally flattened (more elliptical) from anterior to posterior. These characteristics ensure that the tract will collapse from posterior to anterior during dives. This study contains the first report of a double (= internally bifurcated) posterior section of the trachea; it is suggested that this allows continuous food movement along the esophagus without tracheal collapse. The whole upper respiratory tract (from larynx to lungs) has a vascular lining (thicker anteriorly than posteriorly) that appears to be a simple analog of the complex turbinates of birds and mammals. Our study confirmed that the leatherback tracheal structure represents a distinctive way of dealing with the challenges of diving in deep, cold sea water.

Journal of Experimental Marine Biology and Ecology↗

Distribution, migration behavior, habitat use, and species interactions of fall-released juvenile hatchery spring Chinook salmon in the Deschutes River, Oregon, 2003

In a review of National Fish Hatcheries (NFH), the U.S. Fish and Wildlife Service (USFWS) identified the need to assess the fate of hatchery-reared fish and their potential effect on the aquatic community (USFWS 1998). Additionally, the National Marine Fisheries Service (NMFS) recommended monitoring and evaluating ecological interactions between hatchery and wild fish (NMFS 1999; Columbia River Biological Opinion). In 2003, a study was designed to investigate the fate of hatchery-reared fish and to assess habitat use and fish interactions in the Deschutes River, Oregon.

Oregon↗

2011 Georgiana Slough non-physical barrier performance evaluation project report

The Sacramento River and its tributaries support populations of anadromous fish species including winter-run, spring-run, fall-run, and late fall–run Chinook salmon ( Oncorhynchus tshawytscha ); and steelhead ( O. mykiss ). Several of these species are listed as threatened or endangered under the California Endangered Species Act (CESA), federal Endangered Species Act (ESA), or both. These species spawn and rear in Sacramento River tributaries; adults use the mainstem Sacramento River for primarily upstream migration and juveniles use it for downstream migration. Juvenile Chinook salmon and steelhead migrate through the lower river during winter and spring. During their downstream migration, juvenile salmonids encounter alternative pathways, such as Sutter and Steamboat Sloughs, the Sacramento–San Joaquin Delta (Delta), Delta Cross Channel (DCC), and Georgiana Slough. Likewise, sturgeon juveniles migrate downstream in the Sacramento River basin to the Delta, utilizing the distributary channels to rear within and migrate through the system. Georgiana Slough is a natural channel that allows water and fish to move into the interior Delta. Previous studies have demonstrated that juvenile Chinook salmon experience greater mortality when migrating into Georgiana Slough than those juveniles that continue to migrate downstream in the Sacramento River (Perry 2010). Movement and/or diversion of these fish into the interior and south Delta increases the likelihood of losses through predation, entrainment into non-project Delta diversions, and mortality associated with the State Water Project (SWP) and Central Valley Project (CVP) pumping facilities in the south Delta (Perry 2010; NMFS 2009). Figure ES-1 shows the migration pathways in the lower Sacramento River and Delta for outmigrating anadromous salmonids, and the location of the DCC, and the SWP and CVP pumping facilities in the south Delta. Passage of juvenile salmonids from the Sacramento River into the interior Delta through the DCC can be reduced through seasonal closure of the radial gates (February through May); however, no similar protection is available to reduce the movement of juvenile salmonids from the Sacramento River into the interior Delta through Georgiana Slough. Flows into Georgiana Slough improve water quality and flushing in the interior Delta and free access encourages use by recreational boaters. Because of these benefits, alternatives to the installation of a physical barrier (i.e. radial gates), are being investigated. Under the ESA, the National Marine Fisheries Service (NMFS) issued the 2009 Biological and Conference Opinion for the Long‐Term Operations of the Central Valley Project and State Water Project (BO) for Chinook salmon and other listed anadromous fish species (NMFS 2009). Reasonable and Prudent Alternative (RPA) Action IV.1.3 of the BO requires the California Department of Water Resources (DWR) and the U.S. Bureau of Reclamation (Reclamation) to consider engineering solutions to reduce the diversion of juvenile salmonids from the Sacramento River into the interior and south Delta. DWR implemented the 2011 Georgiana Slough NonPhysical Barrier (GSNPB) Study to test the effectiveness of using a non-physical barrier, referred to as a behavioral Bio-Acoustic Fish Fence (BAFF), that combines three stimuli to deter juvenile Chinook salmon from entering Georgiana Slough: sound, high-intensity modulated light (previously known as stroboscopic light), and a bubble curtain. This report presents the results of the experimental tests conducted in 2011.

California↗

Genetic integrity, population status, and long-term viability of isolated populations of shoal bass in the upper Chattahoochee River basin, Georgia

This report characterizes the status of multiple isolated Shoal Bass ( Micropterus cataractae ) populations in the upper Chattahoochee River basin (UCRB), Georgia. The Shoal Bass, a sport fish endemic to the Apalachicola-Chattahoochee-Flint River (ACF) basin, is a fluvial-specialist species considered vulnerable to local extirpations and extinction due to habitat fragmentation and introgression with non-native congeners. Perhaps one of the most isolated populations of Shoal Bass exists in a 2-km reach of Big Creek, a tributary of the Chattahoochee River located near Roswell, Georgia. Big Creek is partially contained within the Chattahoochee River National Recreation Area, although the Big Creek watershed is riddled with urban land cover. Roswell Mill Dam limits the upstream extent of the Shoal Bass population at Big Creek, and the downstream extent is presumably limited to the confluence of Big Creek and the Chattahoochee River. This reach of the Chattahoochee River is thermally depressed because of coldwater releases from Lake Lanier, and is considered unsuitable for Shoal Bass. Herein, we examine the genetic integrity, population status, and long-term viability of the Shoal Bass population in Big Creek. We also examine two additional Shoal Bass populations that occur in the UCRB, specifically the Chestatee River and the upper Chattahoochee River, both of which are impounded at Lake Lanier. Together, the Shoal Bass inhabiting these three stream systems comprise a distinct genetic stock of Shoal Bass (Taylor 2017), underscoring the importance of conserving these populations towards maintaining the overall diversity and adaptive potential of the species. We assessed genetic diversity and estimated effective population sizes within these three rivers by genotyping fish with 16 microsatellite DNA markers. Results demonstrated that the Shoal Bass population in Big Creek has experienced high rates of introgression with non-native Smallmouth Bass (M. dolomieu), purportedly introduced into the Chattahoochee River in the past 10-15 years. Alarmingly, only 24% (15 of 62) of putative Shoal Bass collected from Big Creek were genetically pure Shoal Bass, whereas the majority of fish were first-filial (F1) generation hybrids and unidirectional backcrosses towards Shoal Bass. Fleeting opportunity may remain to conserve the native genome of the Shoal Bass population in Big Creek. High hybridization rates prevented genetic diversity analysis for the Big Creek population. Shoal Bass populations in the Chestatee and Chattahoochee rivers displayed levels of genetic diversity similar to populations that persist in other rivers in the ACF basin, namely the Flint and Chipola rivers. Effective population sizes of 93.8– 197.4 for the Chestatee and Chattahoochee rivers (combined) suggest that the conservation status of these populations is stable for the short-term, but may be at risk of losing genetic diversity and adaptive potential in the long-term. To estimate age and mortality of the three populations, we used fish scales and capture-markrecapture (CMR) as complementary, non-lethal methods for age estimation. Estimated ages of phenotypic Shoal Bass ranged from 1-12 years in all three populations, demonstrating increased longevity compared to populations elsewhere within the native range. Catch-curve estimates of annual mortality ranged from 18.4-23.7%, which are markedly lower than those observed in other Shoal Bass populations in the ACF basin. These differences in life-history characteristics underscore the need for the development of population-specific management and conservation strategies for Shoal Bass in the UCRB. The lowest recruitment variability (i.e., the variation in year-class strength) was observed in the Chestatee River, a forested watershed, whereas the highest variability was observed in Big Creek, an urbanized watershed. Recruitment strength in Big Creek was negatively influenced by discharge variability in the summer months, suggesting that flashy, sediment-laden flows hinder survival of recently hatched young. Other statistically significant models from Big Creek and the Chattahoochee River indicated that over-winter survival could be an important pinch-point for recruitment in UCRB populations. A multi-agency sampling effort was conducted from May 2013-May 2016 to estimate the population size of Shoal Bass occupying the 1-km of wadeable shoal habitats in Big Creek. Using CMR models, we estimated that approximately 219-348 Shoal Bass (≥ 70 mm total length) occupied the area throughout the duration of our study. These estimates largely reflect abundance of individuals aged 0-2 years, as only 9% (36 of 408) tagged fish were aged ≥ 7 years. Local abundance appeared similar to that reported for a population that inhabited Little Uchee Creek, a similar-sized tributary of the Chattahoochee River, prior to its recent functional extirpation. The low abundance of large, adult Shoal Bass further suggests the long-term viability of the Big Creek population may be in jeopardy. Perhaps most importantly, CMR estimates reflect abundance of phenotypic Shoal Bass – genetic analyses suggest the abundance of pure Shoal Bass could be an order of magnitude smaller. To evaluate the potential for adult Shoal Bass to emigrate from Big Creek into the mainstem Chattahoochee River, we tagged eight adults with acoustic telemetry tags and assessed their seasonal residency at two stationary receiver locations located in increasing proximity to the confluence with the Chattahoochee River. Fish took up residency near the confluence during the fall and winter months, during which time water temperatures in Big Creek were periodically colder than the Chattahoochee River. Although we were unable to document emigration, we conclude that the potential for emigration is highest during the winter months when the Chattahoochee River may be warmer than Big Creek. Two of the tagged fish were caught by anglers near the confluence, suggesting that angling pressure at Big Creek may be higher than previously suspected. Overall, this study observed unique life-history characteristics and characterized the population status of multiple Shoal Bass populations in the UCRB. Populations in the Chestatee and Chattahoochee rivers appear stable at present and likely represent the last remaining strongholds for pure Shoal Bass in the UCRB. Efforts to preserve forested watershed conditions, natural hydrology, and shoal habitats would contribute to the long-term persistence of Shoal Bass populations in these two rivers. Additionally, the detection of non-native Alabama Bass and their associated hybrids in both rivers is cause for concern. Diligent monitoring of hybridization dynamics between Alabama Bass and Shoal Bass is warranted, along with an assessment of Alabama Bass invasion extent upstream of Lake Lanier. The Shoal Bass population in Big Creek is threatened by elevated levels of introgression with nonnative Smallmouth Bass, recruitment variability, low abundance of adults, and isolation from other populations. Conservation intervention is urgently needed to restore and preserve this genetically distinct population, which would contribute to preservation of range wide genetic diversity and adaptability of the species. Additionally, an urban sport fishery for Shoal Bass at Big Creek has the potential to serve as a tool for increasing public awareness, engagement, and support of Shoal Bass conservation efforts in the UCRB. We suggest strategies for conservation of the remnant shoal habitats and Shoal Bass population in Big Creek, including potential development of a supplemental stocking program, selective removal of non-native congeners, and delivery of environmental education programs that could bolster awareness and appreciation.

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